Citrus Sinensis ID: 005140
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5Z1 | 712 | Eukaryotic translation in | yes | no | 0.985 | 0.985 | 0.803 | 0.0 | |
| P56821 | 719 | Eukaryotic translation in | N/A | no | 0.994 | 0.984 | 0.826 | 0.0 | |
| P55884 | 814 | Eukaryotic translation in | yes | no | 0.860 | 0.753 | 0.436 | 1e-156 | |
| Q4G061 | 797 | Eukaryotic translation in | yes | no | 0.860 | 0.769 | 0.432 | 1e-155 | |
| Q8JZQ9 | 803 | Eukaryotic translation in | yes | no | 0.860 | 0.763 | 0.432 | 1e-155 | |
| A7MB16 | 786 | Eukaryotic translation in | yes | no | 0.860 | 0.779 | 0.432 | 1e-155 | |
| Q569Z1 | 688 | Eukaryotic translation in | N/A | no | 0.893 | 0.924 | 0.424 | 1e-154 | |
| Q1HDZ5 | 695 | Eukaryotic translation in | N/A | no | 0.860 | 0.882 | 0.423 | 1e-142 | |
| Q0IEY3 | 688 | Eukaryotic translation in | N/A | no | 0.853 | 0.883 | 0.420 | 1e-141 | |
| B0W562 | 688 | Eukaryotic translation in | N/A | no | 0.853 | 0.883 | 0.406 | 1e-138 |
| >sp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1201 bits (3107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/704 (80%), Positives = 636/704 (90%), Gaps = 2/704 (0%)
Query: 9 EIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGNIIVVDNLP 68
+IDA A +LGID QV+ DSIQLPPGED GI SDDE VY+DD E ++GFGNIIVVD+LP
Sbjct: 5 DIDARAAKLGIDWSQVNFDSIQLPPGEDFGIESDDEAVYQDDQSEFDTGFGNIIVVDHLP 64
Query: 69 VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 128
VVPKEKFEKLEGV++KIY+Q+GVIKE+GLWMPVDP+T+ +LGYCFIE+NTPQEA+ AKEK
Sbjct: 65 VVPKEKFEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEK 124
Query: 129 TNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIR 188
++GYKLD++HIFAVNMFDDFD+ M V +EW PP+ +PY PGENLQKWLTDEKARDQ VIR
Sbjct: 125 SHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQARPYVPGENLQKWLTDEKARDQLVIR 184
Query: 189 SGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRL 248
SG DTEV WND R PEPV+KR YWTES+VQWSPLGTYL T+H+QGAAVWGGA+TF RL
Sbjct: 185 SGPDTEVFWNDTRQKAPEPVHKRPYWTESYVQWSPLGTYLVTLHKQGAAVWGGADTFTRL 244
Query: 249 MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEF 308
MRY H VKL+DFSPGEKYLVTY S EPSNPRDA++V I +FDVRTG++MRDFKGSADEF
Sbjct: 245 MRYQHSMVKLVDFSPGEKYLVTYHSQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEF 304
Query: 309 AVGGTGGVAGVSWPVFRWGGGKD-KYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFS 367
++GG GGVAG SWPVFRW GGKD KYFAKL KN ISVYETE+F+LIDKKS+KV+NV+D
Sbjct: 305 SIGGPGGVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDIC 364
Query: 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK 427
WSPTD I+SLFVPE GGGNQPA+V+LVQIPSK ELRQKNLFSVSDCKMYWQSSG+YLAVK
Sbjct: 365 WSPTDSILSLFVPEQGGGNQPAKVALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVK 424
Query: 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487
VDRYTKTKKSTY+GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD PR
Sbjct: 425 VDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPR 484
Query: 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547
PD+SFYSM+TAQ+ GRVSKL TLK KQANALFWSP+G++I+LAGLKGFNGQLEF+NVDEL
Sbjct: 485 PDVSFYSMKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDEL 544
Query: 548 ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLW 607
ETMATAEHFMATD+EWDPTGRYVATAVTSVHEMENGF IWSFNG +LYR LKDHFFQ W
Sbjct: 545 ETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAW 604
Query: 608 RPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEW 667
RPRPPSFLT EKEEEIAK LKKYSKKYEAEDQDVS+ LSEQ+REKR++LK EWEK + +W
Sbjct: 605 RPRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRKALKEEWEKWVMQW 664
Query: 668 KRLHEEEKMERQMLRDGEASD-EEEEYEAKEVEVEEVLDVTEEV 710
K LHEEEK+ RQ LRDGE SD EE+EYEAKEVE E+++DVTEE+
Sbjct: 665 KSLHEEEKLVRQNLRDGEVSDVEEDEYEAKEVEFEDLIDVTEEI 708
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Binds to the 40S ribosome and promotes the binding of methionyl-tRNAi and mRNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|P56821|EIF3B_TOBAC Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/713 (82%), Positives = 646/713 (90%), Gaps = 5/713 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV M EI A A R+G+DL Q+DLDSI LPPGED GI SDD+D+ E+D E ++GFGN
Sbjct: 1 MADVTSMGEITAIAARIGVDLSQIDLDSIHLPPGEDCGIPSDDDDLMEEDPLEFDAGFGN 60
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
I+VVDNLPVVPKEKFEKLEGV+RKIYSQ+GVIKEDGLWMPVDPET K+LGYCFIEYNTPQ
Sbjct: 61 ILVVDNLPVVPKEKFEKLEGVVRKIYSQLGVIKEDGLWMPVDPETHKTLGYCFIEYNTPQ 120
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAEL+KEKT+GYKLDR+HIFAVNMFDD ++F+KVPDEWAPPE KPY PGENLQ+WLTDEK
Sbjct: 121 EAELSKEKTHGYKLDRSHIFAVNMFDDIERFLKVPDEWAPPEIKPYVPGENLQQWLTDEK 180
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G DTEVLWNDAR LKPE VYKRS+WTESFVQWSPLGTYLATVHRQG A+WG
Sbjct: 181 ARDQFVIRAGNDTEVLWNDARQLKPELVYKRSFWTESFVQWSPLGTYLATVHRQGGAIWG 240
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA T NRLMRYAHPQVKLIDFS E+YLVTYSSHEPSNPRD++ VV+NI DVRTGKVMRD
Sbjct: 241 GATTSNRLMRYAHPQVKLIDFSLAERYLVTYSSHEPSNPRDSHAVVLNISDVRTGKVMRD 300
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLK 359
F+GSADEFAVGGTGGV GVSWPVFRW GGK DKYFA++GKN+ISVYETE+F+LIDKKS+K
Sbjct: 301 FQGSADEFAVGGTGGVTGVSWPVFRWSGGKQDKYFARIGKNVISVYETETFSLIDKKSIK 360
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VENVMDFSWSP DPI++LFVPE GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS
Sbjct: 361 VENVMDFSWSPADPILALFVPEC--GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 418
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN NDKI AF W P+G
Sbjct: 419 NGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNTNDKIPAFGWGPEGSPIC 478
Query: 480 VIHG-DSPRPDISFYSMRT-AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG 537
+PRPDI FYS+ A G VSKLTTLKGKQANAL+WSP GRF++L GLKGFNG
Sbjct: 479 CYPSVTTPRPDIRFYSVPVWALTPGLVSKLTTLKGKQANALYWSPGGRFLILTGLKGFNG 538
Query: 538 QLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 597
QLEF++VDELETMA+AEHFMATDVEWDPTGRYVAT+VTSVHEMENGFNIWSFNGKLLYR
Sbjct: 539 QLEFFDVDELETMASAEHFMATDVEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRI 598
Query: 598 LKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLK 657
LKDHFFQ+LWRPRPPSFL+ EKEEEIAKNLK+YSKKYEAEDQDVS+QLSEQ+REKR+ LK
Sbjct: 599 LKDHFFQYLWRPRPPSFLSKEKEEEIAKNLKRYSKKYEAEDQDVSLQLSEQDREKRKKLK 658
Query: 658 NEWEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
EWE I+EWKRLHEEEKMERQ LRDGEASDEEEEYEAKEVEVEE+++VTEE+
Sbjct: 659 EEWEAWINEWKRLHEEEKMERQKLRDGEASDEEEEYEAKEVEVEEIINVTEEI 711
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Binds to the 40S ribosome and promotes the binding of methionyl-tRNAi and mRNA. Nicotiana tabacum (taxid: 4097) |
| >sp|P55884|EIF3B_HUMAN Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3 | Back alignment and function description |
|---|
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 283/648 (43%), Positives = 420/648 (64%), Gaps = 35/648 (5%)
Query: 45 DVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE 104
DV +D QE + G ++IVVDN+P V ++ EKL+ VI KI+S+ G I D + P E
Sbjct: 171 DVLKDRPQEAD-GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND--FYP--EE 225
Query: 105 TQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHK 164
K+ GY F+EY +P A A + +GYKLD+ H F VN+F DFDK+M + DEW PE +
Sbjct: 226 DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQ 285
Query: 165 PYTPGENLQKWLTDEKARDQF--VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWS 222
P+ NL+ WL + + RDQ+ + SG T + WND + P + +R+ WTE++V+WS
Sbjct: 286 PFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK--DPVSIEERARWTETYVRWS 343
Query: 223 PLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDA 282
P GTYLAT H++G A+WGG F ++ R++H V+LIDFSP E+YLVT+S P
Sbjct: 344 PKGTYLATFHQRGIALWGG-EKFKQIQRFSHQGVQLIDFSPCERYLVTFS---PLMDTQD 399
Query: 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMI 342
+ I I+D+ TG R F + WP+F+W K+FA++ + +
Sbjct: 400 DPQAIIIWDILTGHKKRGFHCES------------SAHWPIFKWSH-DGKFFARMTLDTL 446
Query: 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402
S+YET S L+DKKSLK+ + DFSWSP II+ +VPE + PARV+L+Q+P+++E+
Sbjct: 447 SIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEI 504
Query: 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462
R +NLF+V DCK++WQ +GDYL VKVDR K + T FE+FR++E+ +P++V+E+
Sbjct: 505 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM--- 561
Query: 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP 522
+ IIAFAWEP G +FAV+HG++PR +SFY ++ + G++ + +QAN +FWSP
Sbjct: 562 KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK---NNGKIELIKMFDKQQANTIFWSP 618
Query: 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTS-VHEME 581
G+F+VLAGL+ NG L F + + M AEH+MA+DVEWDPTGRYV T+V+ H+++
Sbjct: 619 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 678
Query: 582 NGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDV 641
N + +W+F G+LL + KD F Q LWRPRPP+ L+ E+ ++I K+LKKYSK +E +D+
Sbjct: 679 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLS 738
Query: 642 SMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDE 689
+ S++ E+RR++ ++ K + L+ E+K ER LR G +DE
Sbjct: 739 QSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTDE 786
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Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. Homo sapiens (taxid: 9606) |
| >sp|Q4G061|EIF3B_RAT Eukaryotic translation initiation factor 3 subunit B OS=Rattus norvegicus GN=Eif3b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/648 (43%), Positives = 421/648 (64%), Gaps = 35/648 (5%)
Query: 45 DVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE 104
DV +D QE + G ++IVVDN+P V ++ EKL+ VI KI+S+ G I D + P E
Sbjct: 154 DVLKDRPQEAD-GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIIND--YYP--EE 208
Query: 105 TQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHK 164
K+ GY F+EY +P A A + +GYKLD+ H F VN+F DFDK+M + DEW PE +
Sbjct: 209 DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQ 268
Query: 165 PYTPGENLQKWLTDEKARDQF--VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWS 222
P+ NL+ WL + + RDQ+ + SG T + WND + P + +R+ WTE++V+WS
Sbjct: 269 PFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKD--PVSIEERARWTETYVRWS 326
Query: 223 PLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDA 282
P GTYLAT H++G A+WGG + F ++ R++H V+LIDFSP E+YLVT+S P
Sbjct: 327 PKGTYLATFHQRGIALWGG-DKFKQIQRFSHQGVQLIDFSPCERYLVTFS---PLMDTQD 382
Query: 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMI 342
+ I I+D+ TG R F + WP+F+W K+FA++ + +
Sbjct: 383 DPQAIIIWDILTGHKKRGFHCES------------SAHWPIFKWSH-DGKFFARMTLDTL 429
Query: 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402
S+YET S L+DKKSLK+ + DFSWSP II+ +VPE + PARV+L+Q+P+++E+
Sbjct: 430 SIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEI 487
Query: 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462
R +NLF+V DCK++WQ +GDYL VKVDR K + T FE+FR++E+ +P++V+E+
Sbjct: 488 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM--- 544
Query: 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP 522
+ IIAFAWEP G +FAV+HG++PR +SFY +++ G++ + +QAN +FWSP
Sbjct: 545 KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKS---NGKIELIKMFDKQQANTIFWSP 601
Query: 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT-SVHEME 581
G+F+VLAGL+ NG L F + + M AEH+MA+DVEWDPTGRYV T+V+ H+++
Sbjct: 602 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 661
Query: 582 NGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDV 641
N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++ ++I K+LKKYSK +E +D+
Sbjct: 662 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 721
Query: 642 SMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDE 689
+ S++ E+RR++ ++ + + L+ ++K ER LR G +DE
Sbjct: 722 QSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERLELRGGVDTDE 769
|
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. Rattus norvegicus (taxid: 10116) |
| >sp|Q8JZQ9|EIF3B_MOUSE Eukaryotic translation initiation factor 3 subunit B OS=Mus musculus GN=Eif3b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/648 (43%), Positives = 421/648 (64%), Gaps = 35/648 (5%)
Query: 45 DVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE 104
DV +D QE + G ++IVVDN+P V ++ EKL+ VI KI+S+ G I D + P E
Sbjct: 160 DVLKDRPQEAD-GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIIND--YYP--EE 214
Query: 105 TQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHK 164
K+ GY F+EY +P A A + +GYKLD+ H F VN+F DFDK+M + DEW PE +
Sbjct: 215 DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQ 274
Query: 165 PYTPGENLQKWLTDEKARDQF--VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWS 222
P+ NL+ WL + + RDQ+ + SG T + WND + P + +R+ WTE++V+WS
Sbjct: 275 PFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK--DPVSIEERARWTETYVRWS 332
Query: 223 PLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDA 282
P GTYLAT H++G A+WGG + F ++ R++H V+LIDFSP E+YLVT+S P
Sbjct: 333 PKGTYLATFHQRGIALWGG-DKFKQIQRFSHQGVQLIDFSPCERYLVTFS---PLMDTQD 388
Query: 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMI 342
+ I I+D+ TG R F + WP+F+W K+FA++ + +
Sbjct: 389 DPQAIIIWDILTGHKKRGFHCES------------SAHWPIFKWSH-DGKFFARMTLDTL 435
Query: 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402
S+YET S L+DKKSLK+ + DFSWSP II+ +VPE + PARV+L+Q+P+++E+
Sbjct: 436 SIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEI 493
Query: 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462
R +NLF+V DCK++WQ +GDYL VKVDR K + T FE+FR++E+ +P++V+E+
Sbjct: 494 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM--- 550
Query: 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP 522
+ IIAFAWEP G +FAV+HG++PR +SFY +++ G++ + +QAN +FWSP
Sbjct: 551 KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKS---NGKIELIKMFDKQQANTIFWSP 607
Query: 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT-SVHEME 581
G+F+VLAGL+ NG L F + + M AEH+MA+DVEWDPTGRYV T+V+ H+++
Sbjct: 608 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 667
Query: 582 NGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDV 641
N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++ ++I K+LKKYSK +E +D+
Sbjct: 668 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 727
Query: 642 SMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDE 689
+ S++ E+RR++ ++ + + L+ ++K ER LR G +DE
Sbjct: 728 QSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERLELRGGVDTDE 775
|
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. Mus musculus (taxid: 10090) |
| >sp|A7MB16|EIF3B_BOVIN Eukaryotic translation initiation factor 3 subunit B OS=Bos taurus GN=EIF3B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/648 (43%), Positives = 420/648 (64%), Gaps = 35/648 (5%)
Query: 45 DVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE 104
DV +D QE + G ++IVVDN+P V ++ EKL+ VI KI+S+ G I D + P E
Sbjct: 143 DVLKDRPQEAD-GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND--FYP--EE 197
Query: 105 TQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHK 164
++ GY F+EY +P A A + +GYKLD+ H F VN+F DFDK+M + DEW PE +
Sbjct: 198 DGRTKGYIFLEYASPAHALDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQ 257
Query: 165 PYTPGENLQKWLTDEKARDQF--VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWS 222
P+ NL+ WL + + RDQ+ + SG T + WND + P + +R+ WTE++V+WS
Sbjct: 258 PFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKD--PVSIEERARWTETYVRWS 315
Query: 223 PLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDA 282
P GTYLAT H++G A+WGG F ++ R++H V+LIDFSP E+YLVT+S P
Sbjct: 316 PKGTYLATFHQRGIALWGG-EKFKQIQRFSHQGVQLIDFSPCERYLVTFS---PLMDTQD 371
Query: 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMI 342
+ I I+D+ TG+ R F + WP+F+W K+FA++ + +
Sbjct: 372 DPQAIIIWDILTGQKKRGFHCES------------SAHWPIFKWSH-DGKFFARMTLDTL 418
Query: 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402
S+YET S L+DKKSLK+ + DFSWSP II+ +VPE + PARV+L+Q+P+++E+
Sbjct: 419 SIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEI 476
Query: 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462
R +NLF+V DCK++WQ +GDYL VKVDR K + T FE+FR++E+ +P++V+E+
Sbjct: 477 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM--- 533
Query: 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP 522
+ IIAFAWEP G +FAV+HG++PR +SFY ++ + G++ + +QAN +FWSP
Sbjct: 534 KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK---NNGKIELIKMFDKQQANTIFWSP 590
Query: 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT-SVHEME 581
G+F+VLAGL+ NG L F + + M AEH+MA+DVEWDPTGRYV T+V+ H+++
Sbjct: 591 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 650
Query: 582 NGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDV 641
N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++ ++I K+LKKYSK +E +D+
Sbjct: 651 NAYWLWTFQGRLLQKNSKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 710
Query: 642 SMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDE 689
+ S++ E+RR++ ++ K + L+ E+K R LR G +DE
Sbjct: 711 QSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNARLELRGGVDTDE 758
|
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. Bos taurus (taxid: 9913) |
| >sp|Q569Z1|EIF3B_XENLA Eukaryotic translation initiation factor 3 subunit B OS=Xenopus laevis GN=eif3b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/683 (42%), Positives = 433/683 (63%), Gaps = 47/683 (6%)
Query: 40 ISDDE---DVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDG 96
ISD+E D+ +D QE + G ++IVVDN+P V ++ EKL+ VI KI+S+ G + +
Sbjct: 39 ISDEELLGDILKDRPQEAD-GIDSVIVVDNVPQVGPDRLEKLKNVIVKIFSKFGKLTNEF 97
Query: 97 LWMPVDPETQKSL-GYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVP 155
P+ + S GY F+EY P +A+ A + +GYKLD+ H F VN+F DFDK+M +
Sbjct: 98 Y-----PQAEGSTKGYIFLEYALPAQAQDAVKNADGYKLDKQHTFRVNLFTDFDKYMVIG 152
Query: 156 DEWAPPEHKPYTPGENLQKWLTDEKARDQF--VIRSGTDTEVLWNDARHLKPEPVYKRSY 213
DEW PE +P+ NL+ WL D RDQF + SG T + W D + +P PV +R+
Sbjct: 153 DEWDVPEKQPFKDFGNLRSWLEDPDCRDQFSVIYESGDRTSIFWTDVK--EPVPVEERAR 210
Query: 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSS 273
WTE++V+WSP GTYLAT H++G A+WGG F ++ R++H V+LIDFSP E+YLVT+S
Sbjct: 211 WTETYVRWSPKGTYLATFHQRGIALWGGEK-FKQIQRFSHQGVQLIDFSPCERYLVTFS- 268
Query: 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333
P I I+D+ TG R F + WP+F+W K+
Sbjct: 269 --PLMDTKEEPQAIIIWDILTGHNKRGFHCES------------SAHWPIFKWSHD-GKF 313
Query: 334 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSL 393
FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VPE + PARV+L
Sbjct: 314 FARMTLDTLSIYETPSMGLLDKKSLKITGIKDFSWSPGGNIIAFWVPE--DKDIPARVTL 371
Query: 394 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453
+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T FE+FR++E+ +P
Sbjct: 372 MQMPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGMVTNFEIFRMREKQVP 431
Query: 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK 513
++V+E+ D IIAFAWEP G +FAV+HG+ PR +SFY ++ + G++ + +
Sbjct: 432 VDVVEM---KDGIIAFAWEPNGSKFAVLHGEVPRISVSFYHVK---NNGKIELIKMYDKQ 485
Query: 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATA 573
QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+ A+DVEWDPTGRYV T+
Sbjct: 486 QANTIFWSPQGQFLVLAGLRSMNGALAFVDTSDCTIMNIAEHYTASDVEWDPTGRYVITS 545
Query: 574 VT-SVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSK 632
V+ H+++N + +W+F G+LL + KD F Q LWRPRPPS L+ ++ ++I K+LKKYSK
Sbjct: 546 VSWWSHKVDNAYWMWTFQGRLLQKNNKDRFCQLLWRPRPPSLLSQDQIKQIKKDLKKYSK 605
Query: 633 KYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASD---- 688
+E +D+ + S++ E+RR++ E++ +L+ E+K R +R G +D
Sbjct: 606 IFEQKDRLSQTKASKELIERRRAMMEEYKTYREMATKLYMEQKTARLEIRGGVDTDLLDS 665
Query: 689 EEEEYEAKEVE---VEEVLDVTE 708
E++E + +E EE++ V E
Sbjct: 666 NVEDWEEETIEFFVTEEIIPVEE 688
|
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. Xenopus laevis (taxid: 8355) |
| >sp|Q1HDZ5|EIF3B_BOMMO Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori GN=eIF3-S9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 286/675 (42%), Positives = 412/675 (61%), Gaps = 62/675 (9%)
Query: 27 DSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIY 86
D +++P E L D+ E +E + G+ N++VVD P V E+ EKL+ VI KI+
Sbjct: 34 DFVEIPEEELLA------DILEQKPKESD-GYENVVVVDGCPQVGPERLEKLQSVINKIF 86
Query: 87 SQIGVIKEDGLWMPVDPETQKSL--GYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 144
S+ G I + P T+ L GY F+EY+ PQ A A + TN KLD+ H F VN+
Sbjct: 87 SKFGKIVNEYY-----PTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 141
Query: 145 FDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEV-LWNDARHL 203
F DF K+ +P EW PP +P+ +LQ +L D A DQF++ GT + +W +A
Sbjct: 142 FTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPDAYDQFLVGIGTGVALQVWQNAL-- 199
Query: 204 KPEPVY--KRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDF 261
PEP+ +R WTE++ WSPLGTYLAT H +G A+W G F++ ++ HP+ + I F
Sbjct: 200 -PEPLLLQERPNWTETYAVWSPLGTYLATFHWRGVALWAGPK-FSQFQKFFHPEARFISF 257
Query: 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321
SP E Y+VT+S PS R ++ I I D+RTG+ R F DE+ V+W
Sbjct: 258 SPCENYMVTFS---PSGDRGDDKKWI-IGDIRTGQEKRSFP-PPDEY----------VTW 302
Query: 322 PVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPE 381
P+FRW D++FA++G +++SVYET F L+DKKS+K+ + DFSWSP+D ++ +V E
Sbjct: 303 PIFRW-SKDDRFFARIGADVLSVYETPGFGLLDKKSIKIPGIRDFSWSPSDNTLAYWVAE 361
Query: 382 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK------ 435
+ PARV+L++IP++ E+R KNLFSV+DCK++WQ SGDYL VKVDRY+K K
Sbjct: 362 --DKDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKIDI 419
Query: 436 --KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493
Y FE+F ++E++IP++ +E+ + I AFAWEP G +F++IHGD ISFY
Sbjct: 420 KYSGMYYNFEIFHMREKEIPVDSVEI---KEPIQAFAWEPVGSKFSIIHGDPANISISFY 476
Query: 494 SMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA 553
+ T Q + K + K N LFWSPSG+FIVLA L G LEF + ++ M A
Sbjct: 477 QVNTGQAPTLLKK---FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVA 533
Query: 554 EHFMATDVEWDPTGRYVATAVTSVH-EMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPP 612
+H+ + +EWDPTGRYV T V+S+ +M+ G+ IWSF GK+L R +K+ F QF WRPRPP
Sbjct: 534 DHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRPP 593
Query: 613 SFLTPEKEEEIAKNLKKYSKKYEAEDQ----DVSMQLSEQEREKRRSLKNEWEKKISEWK 668
+ L+ ++++EI KNLKKY ++E++D+ S +L + E+ + E KI EW
Sbjct: 594 TLLSEKQQKEIKKNLKKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWN 653
Query: 669 RLHEEEKMERQMLRD 683
E+K R LRD
Sbjct: 654 ----EQKPRRLELRD 664
|
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. Bombyx mori (taxid: 7091) |
| >sp|Q0IEY3|EIF3B_AEDAE Eukaryotic translation initiation factor 3 subunit B OS=Aedes aegypti GN=eIF3-S9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 280/666 (42%), Positives = 412/666 (61%), Gaps = 58/666 (8%)
Query: 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEY 116
G N+IVVDN+PVV +F KL+GV+ K++ G I + P D E + + GY FIE+
Sbjct: 54 GVENVIVVDNIPVVGPARFHKLQGVLEKLFKTAGTIV--NIHYPKDDE-ENTRGYAFIEF 110
Query: 117 NTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWL 176
P+ AE A + N Y+LD++H VN+F DF K+ +P EW+PPE +PY +L ++
Sbjct: 111 KNPEMAEEAVKAFNNYRLDKSHTLLVNLFSDFQKYSDIPKEWSPPEPQPYKMQNDLYNFI 170
Query: 177 TDEKARDQF-VIRSGTDTEVLWNDARHLKPEPV--YKRSYWTESFVQWSPLGTYLATVHR 233
T+ A+DQF VI + V ++ +PEPV R +TE++V+WSPLGTY+ T H+
Sbjct: 171 TEPDAQDQFCVIAESSPGAVQVQFWQNTQPEPVELLTRDRFTETYVKWSPLGTYIVTFHK 230
Query: 234 QGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293
QG +WGG+N F ++ ++ H + +DFSP E+YLVTY N I I+D+R
Sbjct: 231 QGVVIWGGSN-FTKINKFPHSGTQYVDFSPCEQYLVTYG---------PNGQKIIIWDIR 280
Query: 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLI 353
TG R F GT ++ +FRW DKY A++G N I VYET +F L+
Sbjct: 281 TGTEKRSFISD-------GTSNMS-----MFRWSHD-DKYVARMGDNAIHVYETSTFYLL 327
Query: 354 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413
DKKS+KV+ + +FSWSPTD II+ ++ E PARV+L++IP K E+R KNLF+V+DC
Sbjct: 328 DKKSIKVQGIRNFSWSPTDNIIAYWMSE--DLEAPARVTLLEIPRKNEIRNKNLFNVADC 385
Query: 414 KMYWQSSGDYLAVKVDRYTKTKK----------STYTGFELFRIKERDIPIEVLELDNKN 463
K++WQ SGDYL VKVDRY+K+KK + FE+F ++E+DIP++ +E+
Sbjct: 386 KIHWQKSGDYLCVKVDRYSKSKKDKKDADVKFLGMFYNFEIFHMREKDIPVDSVEV---K 442
Query: 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523
+ I+AFAWEP G +FA+IHGD ++SFY + Q + L L+ K + LFWSP
Sbjct: 443 ETILAFAWEPVGSKFAIIHGDPASANVSFYEAKKGQEP---TMLKKLEKKICSHLFWSPR 499
Query: 524 GRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENG 583
G+FIVLA L+ G EF + ++ M + +HF A++VEWDPTGRYV T + + ++G
Sbjct: 500 GQFIVLANLQA--GSFEFVDTNDFTIMKSGDHFRASEVEWDPTGRYVVTGTSGKVKEDHG 557
Query: 584 FNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSM 643
++IWSF GK+L R +F FLWRPRPP+ L+ EK++EI KNLKKY ++E++D+
Sbjct: 558 YHIWSFQGKILKRVNLKNFILFLWRPRPPTLLSDEKQKEIRKNLKKYYAQFESKDRIRMT 617
Query: 644 QLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLRDGEASDE-EEEYEAKEV 698
+ S++ EKR L+ ++ K++SEW EE+K R LR+ +D + + + E
Sbjct: 618 RASKELLEKRAKLREQFVEYRTKRVSEW----EEQKYRRMQLRNNIDTDTLDADPDNVEE 673
Query: 699 EVEEVL 704
E+ E+L
Sbjct: 674 EIVEIL 679
|
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. Aedes aegypti (taxid: 7159) |
| >sp|B0W562|EIF3B_CULQU Eukaryotic translation initiation factor 3 subunit B OS=Culex quinquefasciatus GN=eIF3-S9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/666 (40%), Positives = 413/666 (62%), Gaps = 58/666 (8%)
Query: 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEY 116
G N+IVVDN+PVV +F KL+GV+ KI+ G I + P D E + + G+ FIE+
Sbjct: 54 GVENVIVVDNIPVVGPARFPKLQGVLEKIFKNAGTIV--NIHYPKDDE-ENTKGFAFIEF 110
Query: 117 NTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWL 176
P+ AE A + N Y+LD++H VN+F DF K+ +P +W+PPE +PY +L +L
Sbjct: 111 KNPEMAEEAVKAFNNYRLDKSHTLLVNLFSDFQKYSDIPKDWSPPESQPYKVQNDLYTFL 170
Query: 177 TDEKARDQF-VIRSGTDTEVLWNDARHLKPEPV--YKRSYWTESFVQWSPLGTYLATVHR 233
++ A+DQF V+ T V + +PEPV R +TE++V+WSPLGTY+ T H+
Sbjct: 171 SEPDAQDQFCVVAESTPGAVQVQFWHNTQPEPVELLTRERFTETYVKWSPLGTYIVTFHK 230
Query: 234 QGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293
QG +WGG+ +F ++ ++AH + +DFSP E+YLVTY N I I+D+R
Sbjct: 231 QGVVIWGGS-SFTKINKFAHSNTQYVDFSPCEQYLVTYG---------PNGQKIIIWDIR 280
Query: 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLI 353
TG R F + G + +S +FRW DKY A++G N I VYET +F L+
Sbjct: 281 TGTEKRSFV----------SDGSSNMS--MFRWSHD-DKYVARMGDNAIHVYETNTFYLL 327
Query: 354 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413
DKKS+KV+ + +FSWSPTD II+ ++ E + PARV+L++IP K E+R KNLF+V+DC
Sbjct: 328 DKKSIKVQGIRNFSWSPTDNIIAYWMSE--DIDAPARVTLLEIPKKIEVRNKNLFNVADC 385
Query: 414 KMYWQSSGDYLAVKVDRYTKTKK----------STYTGFELFRIKERDIPIEVLELDNKN 463
K++WQ SGDYL VKVDRY+K+KK + FE+F ++E+DIP++ +E+
Sbjct: 386 KIHWQKSGDYLCVKVDRYSKSKKDKKDADVKFLGMFYNFEIFHMREKDIPVDSVEV---K 442
Query: 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523
+ I+AFAWEP G +F++IHG+ ++SFY + Q + L ++ K + LFWSP
Sbjct: 443 ETILAFAWEPVGSKFSIIHGEPSNANVSFYEAKKGQEP---TMLRKMEKKVCSHLFWSPR 499
Query: 524 GRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENG 583
G+FIVLA L+ G EF + ++ M + +H+ A++VEWDPTGRYV T + + ++G
Sbjct: 500 GQFIVLANLQM--GSFEFVDTNDFTIMKSGDHYRASEVEWDPTGRYVVTGTSGKVKEDHG 557
Query: 584 FNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSM 643
+++WSF G++L R +F FLWRPRPP+ L E+++EI KNLKKY ++E++D+
Sbjct: 558 YHLWSFQGRILKRVNLKNFMLFLWRPRPPTLLPDERQKEIRKNLKKYYAQFESKDRVRMT 617
Query: 644 QLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLRDGEASDE-EEEYEAKEV 698
+ S++ EKR L+ ++ K++++W EE+K R LR+ +D E + + E
Sbjct: 618 RASKELLEKRAKLREQFVEYRAKRVNDW----EEQKYRRMQLRNNMDTDTLEADPDNVEE 673
Query: 699 EVEEVL 704
E+ E+L
Sbjct: 674 EIVEIL 679
|
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. Culex quinquefasciatus (taxid: 7176) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| 255548666 | 720 | Eukaryotic translation initiation factor | 0.997 | 0.986 | 0.866 | 0.0 | |
| 449496864 | 718 | PREDICTED: LOW QUALITY PROTEIN: eukaryot | 0.997 | 0.988 | 0.872 | 0.0 | |
| 356506676 | 718 | PREDICTED: eukaryotic translation initia | 0.995 | 0.987 | 0.863 | 0.0 | |
| 356520818 | 718 | PREDICTED: eukaryotic translation initia | 0.995 | 0.987 | 0.862 | 0.0 | |
| 225430549 | 718 | PREDICTED: eukaryotic translation initia | 0.995 | 0.987 | 0.876 | 0.0 | |
| 147766289 | 719 | hypothetical protein VITISV_017587 [Viti | 0.994 | 0.984 | 0.876 | 0.0 | |
| 449465352 | 718 | PREDICTED: eukaryotic translation initia | 0.997 | 0.988 | 0.873 | 0.0 | |
| 224089426 | 719 | predicted protein [Populus trichocarpa] | 0.995 | 0.986 | 0.862 | 0.0 | |
| 449443992 | 718 | PREDICTED: eukaryotic translation initia | 0.997 | 0.988 | 0.855 | 0.0 | |
| 357465911 | 731 | Eukaryotic translation initiation factor | 0.995 | 0.969 | 0.833 | 0.0 |
| >gi|255548666|ref|XP_002515389.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223545333|gb|EEF46838.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1278 bits (3306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/712 (86%), Positives = 674/712 (94%), Gaps = 2/712 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV++MN+ID A GIDL Q+DL SI L PGE+ GIISDDEDV++ + + E+GF N
Sbjct: 1 MADVMMMNDIDERAAAAGIDLSQLDLSSIHLSPGENFGIISDDEDVHQREQLDFEAGFNN 60
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQK+LGYCFIEYNTPQ
Sbjct: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKTLGYCFIEYNTPQ 120
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELAKEKTNGYKLDRAHIFAVNMF+DFD+FM+VPDEWAPPE +PY PGENLQ WLTDEK
Sbjct: 121 EAELAKEKTNGYKLDRAHIFAVNMFEDFDRFMRVPDEWAPPEFRPYVPGENLQHWLTDEK 180
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEV WNDAR LKP+PVYKR+YWTESFVQWSPLGTYLATVHRQGAAVWG
Sbjct: 181 ARDQFVIRAGSDTEVFWNDARQLKPDPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWG 240
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA+ FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNP DANR+VINIFDVRTGKVMRD
Sbjct: 241 GASAFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPHDANRIVINIFDVRTGKVMRD 300
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGSADEFA+GGTGGVAGVSWP+FRWGGGK DKYFA++GKNMISVYETE+F+LIDKKS+K
Sbjct: 301 FKGSADEFAIGGTGGVAGVSWPIFRWGGGKDDKYFARMGKNMISVYETETFSLIDKKSMK 360
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VEN+MDFSWSPTDPI++LFVPEL GGNQPARVSLVQIPSKEE+RQKNLFSV+DCKMYWQS
Sbjct: 361 VENIMDFSWSPTDPILALFVPELAGGNQPARVSLVQIPSKEEMRQKNLFSVNDCKMYWQS 420
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTK++++TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA
Sbjct: 421 NGDYLAVKVDRYTKSRRTTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 480
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGDSPRPD+SFYSMRTA + GRVSKLTTLKGKQANALFWSP+G +++LAGLKGFNGQL
Sbjct: 481 VIHGDSPRPDVSFYSMRTAHNTGRVSKLTTLKGKQANALFWSPAGHYLILAGLKGFNGQL 540
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSV-HEMENGFNIWSFNGKLLYRTL 598
EFYNVDELETMAT EHFMATD++WDPTGRYVAT+VTSV HEMENGFNIWSFNGKLLYR L
Sbjct: 541 EFYNVDELETMATTEHFMATDIDWDPTGRYVATSVTSVHHEMENGFNIWSFNGKLLYRIL 600
Query: 599 KDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKN 658
KDHFFQFLWRPRPPSFL+ EKEEEIA NLKKYSKKYEAEDQDVS+QLSEQ+REKRR LK+
Sbjct: 601 KDHFFQFLWRPRPPSFLSAEKEEEIANNLKKYSKKYEAEDQDVSLQLSEQDREKRRMLKD 660
Query: 659 EWEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
+WEK ++EWK HEEEK+ERQ LRDGEASDEEEEYEAKEVEVEE+LDV+EEV
Sbjct: 661 DWEKWVNEWKLQHEEEKLERQKLRDGEASDEEEEYEAKEVEVEELLDVSEEV 712
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449496864|ref|XP_004160247.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1278 bits (3306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/711 (87%), Positives = 673/711 (94%), Gaps = 1/711 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV++M EI+ TA RLGIDL QVD D+I+LPPGED GIISDDE+V +++ E +SGFGN
Sbjct: 1 MADVVLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGN 60
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVP EKF+KLEGV+RKI+ QIGVIK+DGLWMPVD TQK+LGYCFIEY TPQ
Sbjct: 61 IIVVDNLPVVPPEKFDKLEGVVRKIFGQIGVIKDDGLWMPVDRTTQKTLGYCFIEYGTPQ 120
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELAKEKT+GYKLDRAHIF VNMF+DFD+FMKVPDEWAPPE PYTPGENLQ+WLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVNPYTPGENLQQWLTDEK 180
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEV WNDARHLKPEPVYKR++WTESFVQWS LGTYLAT+HRQGAAVWG
Sbjct: 181 ARDQFVIRAGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWG 240
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA TFNRLMR+AH QVKLIDFSPGEKYLVTYSSHEPSNPRDANR+VINIFDVRTGK MRD
Sbjct: 241 GAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKGMRD 300
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGS D+FA+GGTGGVAGVSWPVFRWGGGKD KYFA++GKN+ISVYETE+F+LIDKKSLK
Sbjct: 301 FKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLK 360
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VENVMDF WSPTDPII+LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS
Sbjct: 361 VENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 420
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTK KKSTYTGFELFRIKERDIPIEVLEL+NKNDKIIAFAWEPKGHRFA
Sbjct: 421 NGDYLAVKVDRYTKXKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFA 480
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGD+PRPD+SFYSMR+ ++GRVSKL TLKGKQANALFWSP+GRFI+LAGLKGFNGQL
Sbjct: 481 VIHGDNPRPDVSFYSMRSTNNSGRVSKLATLKGKQANALFWSPAGRFIILAGLKGFNGQL 540
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK 599
EFYNVDELETMATAEHFMATD+EWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR LK
Sbjct: 541 EFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILK 600
Query: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNE 659
DHFFQF WRPRPPSFL+PEKEEEIAKNLKKYSKKYEAEDQDVSM LSEQERE+RR LK+E
Sbjct: 601 DHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQERERRRMLKDE 660
Query: 660 WEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
W+K ++EWKRLHEEEK+ RQ LRDGEASDEEEEYEAKEVEVEE+LDV+EEV
Sbjct: 661 WDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEV 711
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506676|ref|XP_003522102.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1267 bits (3278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/711 (86%), Positives = 678/711 (95%), Gaps = 2/711 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV+IM EI+ T+ RLG+DL +DLD+I+LP GED GI+SDDE+VY++++ E ESGFGN
Sbjct: 1 MADVMIMKEIEDTSLRLGVDLSTLDLDAIRLPTGEDCGIVSDDEEVYQEENLEFESGFGN 60
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVP+EKFEKLEGV+RKIYSQIGVIKEDGLWMPVDPET+K+LGYCFIEYNTPQ
Sbjct: 61 IIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETEKTLGYCFIEYNTPQ 120
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELAKEKT+GYKLDRAHIFAV+MFDDFD+FMKVP+EWAPPE KPY PGENLQ WLTD K
Sbjct: 121 EAELAKEKTHGYKLDRAHIFAVSMFDDFDRFMKVPNEWAPPETKPYAPGENLQHWLTDAK 180
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEVLWNDARHLKP+PVYKR++WTESFVQWSPLGTYLATVHRQGAAVWG
Sbjct: 181 ARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWG 240
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA +FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN+FDVRTGKVMRD
Sbjct: 241 GAGSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINLFDVRTGKVMRD 300
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGSAD+FAVGG GGV GVSWPVF+W GG+ DKYFA++GKN++SVYETE+F+L+DKKSLK
Sbjct: 301 FKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNILSVYETETFSLVDKKSLK 360
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VEN+MDF WSPTDPII+LFVPE+GGGNQPARVSL+QIPSK ELRQKNLFSVSDCKMYWQS
Sbjct: 361 VENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKVELRQKNLFSVSDCKMYWQS 420
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAV V+RYTKTKKSTYTGFELFRIKERDIPIEVLEL+NKNDKIIAFAWEPKGHRFA
Sbjct: 421 NGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFA 480
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGD+P+PD+S YSMRT Q++ RVSKLTTLKGKQANALFWSP+GR+IVLAGLKGFNGQL
Sbjct: 481 VIHGDNPKPDVSIYSMRTGQNS-RVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQL 539
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK 599
EFYNVDELETMATAEHFMATD+EWDPTGRYVATAVTSVHEMENGFNIWSFNGK LYR LK
Sbjct: 540 EFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILK 599
Query: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNE 659
DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVS+ LSEQEREKRR LK E
Sbjct: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEE 659
Query: 660 WEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
W+K ++EWKR+HEEE ++RQ LRDGEASDEEEEYEAK++EVEEV+D+TEEV
Sbjct: 660 WDKWVNEWKRIHEEESLQRQKLRDGEASDEEEEYEAKDIEVEEVIDLTEEV 710
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520818|ref|XP_003529057.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1265 bits (3274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/711 (86%), Positives = 677/711 (95%), Gaps = 2/711 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV++M EI+ TA RLG+DL +DLD+I+LPPGED GI+SDDE VY++++ E ESGFGN
Sbjct: 1 MADVMVMKEIEDTALRLGVDLSTLDLDAIRLPPGEDCGIVSDDEVVYQEENLEFESGFGN 60
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVP+EKFEKLEGV+RKIYSQIGVIKEDGLWMPVDPET+K+LGYCFIEYNTPQ
Sbjct: 61 IIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETEKTLGYCFIEYNTPQ 120
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELAKEKT+GYKLDRAHIFAV+MFDDFD+FMKVP+EWAPPE KPY PGENLQ WLTD K
Sbjct: 121 EAELAKEKTHGYKLDRAHIFAVSMFDDFDRFMKVPNEWAPPETKPYAPGENLQHWLTDAK 180
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEVLWNDARHLKP+PVYKR++WTESFVQWSPLGTYLATVHRQGAAVWG
Sbjct: 181 ARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWG 240
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA +FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD
Sbjct: 241 GAASFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGSAD+FAVGG GGV GVSWPVF+W GG+ DKYFA++GKN++SVYE E+F+L+DKKSLK
Sbjct: 301 FKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNILSVYEAETFSLVDKKSLK 360
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VEN+MDF WSPTDPII+LFVPE+GGGNQPARVSL+QIPSKEELRQKNLFSVSDCK+YWQS
Sbjct: 361 VENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKIYWQS 420
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAV V+RYTKTKKSTYTGFELFRIKERDIPIEVLEL+NKNDKIIAFAWEPKGHRFA
Sbjct: 421 NGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFA 480
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGD+P+PD+S YSMRT Q++ RVSKL TLKGKQANALFWSP+GR+IVLAGLKGFNGQL
Sbjct: 481 VIHGDNPKPDVSIYSMRTGQNS-RVSKLITLKGKQANALFWSPAGRYIVLAGLKGFNGQL 539
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK 599
EFYNVDELETMATAEHFMATD+EWDPTGRYVATAVTSVHEMENGFNIWSFNGK LYR LK
Sbjct: 540 EFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILK 599
Query: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNE 659
DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVS+ LSEQEREKRR LK E
Sbjct: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEE 659
Query: 660 WEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
W+K ++EWK++HEEE ++RQ LRDGEASDEEEEYEAK++EVEEV+DVT+EV
Sbjct: 660 WDKWVNEWKQIHEEESLQRQKLRDGEASDEEEEYEAKDIEVEEVIDVTKEV 710
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430549|ref|XP_002285591.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B [Vitis vinifera] gi|296082169|emb|CBI21174.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1258 bits (3256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/711 (87%), Positives = 676/711 (95%), Gaps = 2/711 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M +V+ M +I ATA+ LGID+ +D DSI+LPPGED GI SDD D++E+D E +SGFGN
Sbjct: 1 MAEVISMEDIRATASTLGIDVSNIDFDSIRLPPGEDFGITSDD-DLHEEDPLEYDSGFGN 59
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVP+EKFEKLEGV+RKIYSQIGVIKEDGLWMPVD +TQK+LGYCFIEYNTPQ
Sbjct: 60 IIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDSDTQKTLGYCFIEYNTPQ 119
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELA+EKTNGYKLDRAHIFAVNMFDDFD+FMKVPDEWAPPE KPYTPGENLQ WLTDEK
Sbjct: 120 EAELAREKTNGYKLDRAHIFAVNMFDDFDRFMKVPDEWAPPETKPYTPGENLQHWLTDEK 179
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEVLWNDARHLKPEPVYKR+YWTESFVQWSPLGTYLATVHRQGAAVWG
Sbjct: 180 ARDQFVIRAGSDTEVLWNDARHLKPEPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWG 239
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD +RVV+N+FDVRTGKVMRD
Sbjct: 240 GATAFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNVFDVRTGKVMRD 299
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGS DEF+VGG GGV+GVSWPVFRWGGGK DKYFA++GKN+ISVYETE+F+LIDKKSLK
Sbjct: 300 FKGSMDEFSVGGAGGVSGVSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLK 359
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VENVMD SWSP DPI++LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS
Sbjct: 360 VENVMDLSWSPADPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL+NKNDKIIAFAWEPKGHRFA
Sbjct: 420 NGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFA 479
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGDSPRPD+SFY+MR+ + GRVSKLTTLKGKQANALFWSP+GR+I+LAGLKGFNGQL
Sbjct: 480 VIHGDSPRPDVSFYTMRSGSNTGRVSKLTTLKGKQANALFWSPAGRYIILAGLKGFNGQL 539
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK 599
EFYNVDELETMATAEHFMATD+EWDPTGRYVAT+VTSVHEMENGFNIWSFNGKLLYR LK
Sbjct: 540 EFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILK 599
Query: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNE 659
DHFFQFLWRPRPPSFL+PEKEEEIAKNLKKYSKKYEAEDQDVSM LSEQ+REKR+ LK+E
Sbjct: 600 DHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDE 659
Query: 660 WEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
WE+ +++WKR HEEEK ERQ LRDGEASDEEEEYEAKEVEVEE+LDV+EEV
Sbjct: 660 WERWVNDWKRWHEEEKAERQRLRDGEASDEEEEYEAKEVEVEELLDVSEEV 710
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766289|emb|CAN76773.1| hypothetical protein VITISV_017587 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/710 (87%), Positives = 675/710 (95%), Gaps = 2/710 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M +V+ M +I ATA+ LGID+ +D DSI+LPPGED GI SDD D++E+D E +SGFGN
Sbjct: 1 MAEVISMEDIRATASTLGIDVSNIDFDSIRLPPGEDFGITSDD-DLHEEDPLEYDSGFGN 59
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVP+EKFEKLEGV+RKIYSQIGVIKEDGLWMPVD +TQK+LGYCFIEYNTPQ
Sbjct: 60 IIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDSDTQKTLGYCFIEYNTPQ 119
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELA+EKTNGYKLDRAHIFAVNMFDDFD+FMKVPDEWAPPE KPYTPGENLQ WLTDEK
Sbjct: 120 EAELAREKTNGYKLDRAHIFAVNMFDDFDRFMKVPDEWAPPETKPYTPGENLQHWLTDEK 179
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEVLWNDARHLKPEPVYKR+YWTESFVQWSPLGTYLATVHRQGAAVWG
Sbjct: 180 ARDQFVIRAGSDTEVLWNDARHLKPEPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWG 239
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD +RVV+N+FDVRTGKVMRD
Sbjct: 240 GATAFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNVFDVRTGKVMRD 299
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGS DEF+VGG GGV+GVSWPVFRWGGGK DKYFA++GKN+ISVYETE+F+LIDKKSLK
Sbjct: 300 FKGSMDEFSVGGAGGVSGVSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLK 359
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VENVMD SWSP DPI++LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS
Sbjct: 360 VENVMDLSWSPADPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL+NKNDKIIAFAWEPKGHRFA
Sbjct: 420 NGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFA 479
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGDSPRPD+SFY+MR+ + GRVSKLTTLKGKQANALFWSP+GR+I+LAGLKGFNGQL
Sbjct: 480 VIHGDSPRPDVSFYTMRSGSNTGRVSKLTTLKGKQANALFWSPAGRYIILAGLKGFNGQL 539
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK 599
EFYNVDELETMATAEHFMATD+EWDPTGRYVAT+VTSVHEMENGFNIWSFNGKLLYR LK
Sbjct: 540 EFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILK 599
Query: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNE 659
DHFFQFLWRPRPPSFL+PEKEEEIAKNLKKYSKKYEAEDQDVSM LSEQ+REKR+ LK+E
Sbjct: 600 DHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDE 659
Query: 660 WEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEE 709
WE+ +++WKR HEEEK ERQ LRDGEASDEEEEYEAKEVEVEE+LDV+EE
Sbjct: 660 WERWVNDWKRWHEEEKAERQRLRDGEASDEEEEYEAKEVEVEELLDVSEE 709
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465352|ref|XP_004150392.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/711 (87%), Positives = 672/711 (94%), Gaps = 1/711 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV++M EI+ TA RLGIDL QVD D+I+LPPGED GIISDDE+V +++ E +SGFGN
Sbjct: 1 MADVVLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGN 60
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVP EKFEKLEGV+RKI+ QIGVIK+DGLWMPVD TQK+LGYCFIEY TPQ
Sbjct: 61 IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDRTTQKTLGYCFIEYGTPQ 120
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELAKEKT+GYKLDRAHIF VNMF+DFD+FMKVPDEWAPPE PYTPGENLQ+WLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVNPYTPGENLQQWLTDEK 180
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEV WNDARHLKPEPVYKR++WTESFVQWS LGTYLAT+HRQGAAVWG
Sbjct: 181 ARDQFVIRAGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWG 240
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA TFNRLMR+AH QVKLIDFSPGEKYLVTYSSHEPSNPRDANR+VINIFDVRTGK MRD
Sbjct: 241 GAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKGMRD 300
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGS D+F GGTGGVAGVSWPVFRWGGGKD KYFA++GKN+ISVYETE+F+LIDKKSLK
Sbjct: 301 FKGSPDDFVTGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLK 360
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VENVMDF WSPTDPII+LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS
Sbjct: 361 VENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 420
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL+NKNDKIIAFAWEPKGHRFA
Sbjct: 421 NGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFA 480
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGD+PRPD+SFYSMR+ ++GRVSKL TLKGKQANALFWSP+GRFI+LAGLKGFNGQL
Sbjct: 481 VIHGDNPRPDVSFYSMRSTNNSGRVSKLATLKGKQANALFWSPAGRFIILAGLKGFNGQL 540
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK 599
EFYNVDELETMATAEHFMATD+EWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR LK
Sbjct: 541 EFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILK 600
Query: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNE 659
DHFFQF WRPRPPSFL+PEKEEEIAKNLKKYSKKYEAEDQDVSM LSEQERE+RR LK+E
Sbjct: 601 DHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQERERRRMLKDE 660
Query: 660 WEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
W+K ++EWKRLHEEEK+ RQ LRDGEASDEEEEYEAKEVEVEE+LDV+EEV
Sbjct: 661 WDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEV 711
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089426|ref|XP_002308719.1| predicted protein [Populus trichocarpa] gi|222854695|gb|EEE92242.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/712 (86%), Positives = 671/712 (94%), Gaps = 3/712 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
MG++ + E++ A GIDL +D+DSI+LPPG+D G+ISDDEDVY+++ + + G GN
Sbjct: 1 MGEI-SLTELEERAAAAGIDLSLIDIDSIKLPPGDDFGVISDDEDVYQEEQMDFDYGLGN 59
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IVVDNLPVVPKEKF+KLEGV+ KIYSQIGVIKEDGLWMPVDP TQK+LGYCFIEYNTPQ
Sbjct: 60 TIVVDNLPVVPKEKFDKLEGVVNKIYSQIGVIKEDGLWMPVDPGTQKTLGYCFIEYNTPQ 119
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELAKEKTNGYKLDRAHIFAVNM +DF++FMKVPDEWAPPE +PY PGENLQ WLTDEK
Sbjct: 120 EAELAKEKTNGYKLDRAHIFAVNMIEDFNRFMKVPDEWAPPEIRPYVPGENLQHWLTDEK 179
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIR+G+DTEV WNDARHLKP+PVYKR+YWTESFVQWSPLGTYLATVHRQGAAVWG
Sbjct: 180 ARDQFVIRTGSDTEVFWNDARHLKPDPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWG 239
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
G +TFNRLMRYAHPQVK IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD
Sbjct: 240 GDSTFNRLMRYAHPQVKFIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 299
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGSADEF++GG GGVAGVSWPVFRWGGGK DKYFAK+GKNMISVYETESF+L+DKKSLK
Sbjct: 300 FKGSADEFSIGGAGGVAGVSWPVFRWGGGKDDKYFAKIGKNMISVYETESFSLVDKKSLK 359
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
ENVMDF WSPTDPI +LFVPELGGGNQPARVSL+QIP KEELRQKNLFSVSDCKMYWQS
Sbjct: 360 AENVMDFIWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQS 419
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA
Sbjct: 420 NGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGDSPRPD+SFYSMRTA + GRVSKLTTLKGKQANALFWSPSGR+++LAGLKGFNGQL
Sbjct: 480 VIHGDSPRPDVSFYSMRTAHNTGRVSKLTTLKGKQANALFWSPSGRYLILAGLKGFNGQL 539
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSV-HEMENGFNIWSFNGKLLYRTL 598
EFYNVDELETMATAEHFMATD+EWDPTGRYVAT+VTSV H+MENGFNIWSFNGKLLYRTL
Sbjct: 540 EFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHHDMENGFNIWSFNGKLLYRTL 599
Query: 599 KDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKN 658
KDHFFQFLWRPRP S L+PEKEEEIAKNLKKYSKKYEAEDQDVS+QLSEQ+REKRR +K+
Sbjct: 600 KDHFFQFLWRPRPLSLLSPEKEEEIAKNLKKYSKKYEAEDQDVSLQLSEQDREKRRMMKD 659
Query: 659 EWEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
EW K ++EWK LHEEE+++RQ+LRDGEASDEEEEYEAKEVEVEE+LDV+EE+
Sbjct: 660 EWYKWVNEWKLLHEEERLQRQVLRDGEASDEEEEYEAKEVEVEELLDVSEEI 711
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443992|ref|XP_004139759.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/711 (85%), Positives = 670/711 (94%), Gaps = 1/711 (0%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV++M EI+ +A RLGIDL QVD D+I+LPPGE+ GIISDDE+V +++ E +SGFGN
Sbjct: 1 MADVMLMKEIEDSAGRLGIDLSQVDFDAIRLPPGENFGIISDDEEVLQEESLEFDSGFGN 60
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVP EKFEKLEGV+RKI+ QIGVIK+DGLWMPVDP T K+LGYCFIEY TPQ
Sbjct: 61 IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTTKTLGYCFIEYGTPQ 120
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEK 180
EAELAKEKT+GYKLDRAHIF VNMF++F++ +KVPDEWAPPE PYTPGENLQ+WLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEEFNRLVKVPDEWAPPEINPYTPGENLQQWLTDEK 180
Query: 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWG 240
ARDQFVIRSG+DTEV WNDARHLKPEPVYKR YWTESFVQWS LGTYLAT+HRQGAAVWG
Sbjct: 181 ARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPYWTESFVQWSSLGTYLATIHRQGAAVWG 240
Query: 241 GANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300
GA TFNRLMR+AH QVKLIDFSPGEKYLVTYSSHEP+NPRDANR+VINIFDVRTGKVMRD
Sbjct: 241 GAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPNNPRDANRIVINIFDVRTGKVMRD 300
Query: 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLGKNMISVYETESFTLIDKKSLK 359
FKGS D+FA GGTGGVAGVSWP+FRW GGKD KYFA++GKN+ISVYETE+F+L+DKKSLK
Sbjct: 301 FKGSPDDFATGGTGGVAGVSWPLFRWDGGKDDKYFARIGKNVISVYETETFSLVDKKSLK 360
Query: 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419
VENVMDF WSPTDPII+LFVPELGGGNQPARVSLVQIP+KEELRQKNLFSVSDCKMYWQS
Sbjct: 361 VENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPNKEELRQKNLFSVSDCKMYWQS 420
Query: 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479
+GDYLAVKVDRYTKTKKSTY+GFELFRIKERDIPIEVLEL+NKNDKIIAFAWEPKGHRFA
Sbjct: 421 NGDYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFA 480
Query: 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539
VIHGD+P+PDISFYSMR+ +GRVSKLTTLKGKQANALFWSP GRFI+LAGLKGFNGQL
Sbjct: 481 VIHGDNPKPDISFYSMRSTHSSGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQL 540
Query: 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK 599
EFYNVDELETMATAEHFMATD+EWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR LK
Sbjct: 541 EFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILK 600
Query: 600 DHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNE 659
DHFFQF WRPRPPSFL+PE+EEEIAKNLKKY+KKYEAEDQDVSM LSEQ+REKR+ LK++
Sbjct: 601 DHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYTKKYEAEDQDVSMLLSEQDREKRKMLKDD 660
Query: 660 WEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVLDVTEEV 710
W+K ++EW+RLHEEEK+ R+ LRDGEASDEEEEYEAKEVEVEE+LDV+EEV
Sbjct: 661 WDKWLNEWRRLHEEEKLLREKLRDGEASDEEEEYEAKEVEVEEILDVSEEV 711
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465911|ref|XP_003603240.1| Eukaryotic translation initiation factor 3 subunit B [Medicago truncatula] gi|355492288|gb|AES73491.1| Eukaryotic translation initiation factor 3 subunit B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/726 (83%), Positives = 662/726 (91%), Gaps = 17/726 (2%)
Query: 1 MGDVLIMNEIDATANRLGIDLLQVDLDSIQLPPGEDLGIISDDEDVYEDDDQEVESGFGN 60
M DV++M EI+ A LGIDL +DLDSI LPPG++ GI SDD DV ++++ E +SGFGN
Sbjct: 1 MADVMLMKEIEDKALLLGIDLSSIDLDSIHLPPGDNCGIPSDD-DVDQEENLEFDSGFGN 59
Query: 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
IIVVDNLPVVPKEKFEKL V+RKIYSQIG IKEDGLWMPVDP T+KSLGYCFIEYNTPQ
Sbjct: 60 IIVVDNLPVVPKEKFEKLVTVVRKIYSQIGAIKEDGLWMPVDPATEKSLGYCFIEYNTPQ 119
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPG----------- 169
EAELAKEKT GYKLDR+HIF+V+MFDDFD+FMKVPDEWAPP +K Y PG
Sbjct: 120 EAELAKEKTQGYKLDRSHIFSVSMFDDFDRFMKVPDEWAPPPNKEYAPGPSMFSDCLWSL 179
Query: 170 ----ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLG 225
ENLQ+WLTD KARDQFVIR+G+DTEVLWNDA+ LKP+PVYKR++WTESFVQWSPLG
Sbjct: 180 FLSKENLQQWLTDAKARDQFVIRAGSDTEVLWNDAKLLKPDPVYKRAFWTESFVQWSPLG 239
Query: 226 TYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285
TYLATVHRQGAAVWGGA TFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV
Sbjct: 240 TYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 299
Query: 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLGKNMISV 344
VINIFDVRTGKVMRDFKGSAD+FA+GGTGGV GVSWPVF+W GG+D KYFA++GKN++SV
Sbjct: 300 VINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSV 359
Query: 345 YETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404
YETE+F+L+DKKSLKVEN+MDFSWSPTDPIISLFVPE GGGNQPARVSLVQIPSKEELRQ
Sbjct: 360 YETETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPETGGGNQPARVSLVQIPSKEELRQ 419
Query: 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 464
K LF+VSDCKMYWQS+G+YLAV VDRYTKTKKST+TGFELFRIKERDIPIEVLEL+NKND
Sbjct: 420 KLLFNVSDCKMYWQSNGEYLAVNVDRYTKTKKSTFTGFELFRIKERDIPIEVLELENKND 479
Query: 465 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 524
KIIAFAWEPKGHRFAVIHGD+P+PDIS YSMRTAQ+ GRVSKLTTLKGKQANALFWSP+G
Sbjct: 480 KIIAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAG 539
Query: 525 RFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGF 584
RFIVLAGLKGFNG LEFYNVDELETMA EHF ATDVEWDPTGRYVATAVTSVHEMENGF
Sbjct: 540 RFIVLAGLKGFNGLLEFYNVDELETMANTEHFYATDVEWDPTGRYVATAVTSVHEMENGF 599
Query: 585 NIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQ 644
NIWSFNGK LYR LKDHFFQFLWRPRP SFLT EKEEEIAKNLKKYSKKYEAEDQDVS+
Sbjct: 600 NIWSFNGKHLYRILKDHFFQFLWRPRPASFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLL 659
Query: 645 LSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDEEEEYEAKEVEVEEVL 704
LSEQEREKRR LK +W+K +EWK LHEEEK+ER+ LRDGEASDEEEEYEAK++EVEEV+
Sbjct: 660 LSEQEREKRRVLKEDWDKWANEWKLLHEEEKLERENLRDGEASDEEEEYEAKDIEVEEVV 719
Query: 705 DVTEEV 710
DVT+E+
Sbjct: 720 DVTKEI 725
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| TAIR|locus:2143621 | 738 | TIF3B1 "translation initiation | 0.799 | 0.771 | 0.807 | 2e-301 | |
| TAIR|locus:2145289 | 714 | EIF3B-2 "eukaryotic translatio | 0.955 | 0.952 | 0.767 | 1e-297 | |
| ZFIN|ZDB-GENE-030131-2748 | 683 | eif3ba "eukaryotic translation | 0.504 | 0.525 | 0.462 | 4.2e-158 | |
| UNIPROTKB|P55884 | 814 | EIF3B "Eukaryotic translation | 0.504 | 0.441 | 0.455 | 1.1e-146 | |
| UNIPROTKB|F1P969 | 813 | EIF3B "Uncharacterized protein | 0.504 | 0.441 | 0.452 | 1.8e-146 | |
| UNIPROTKB|A7MB16 | 786 | EIF3B "Eukaryotic translation | 0.504 | 0.456 | 0.449 | 1.3e-145 | |
| MGI|MGI:106478 | 803 | Eif3b "eukaryotic translation | 0.504 | 0.447 | 0.447 | 1.6e-145 | |
| RGD|1309018 | 797 | Eif3b "eukaryotic translation | 0.504 | 0.450 | 0.447 | 1.6e-145 | |
| UNIPROTKB|Q4G061 | 797 | Eif3b "Eukaryotic translation | 0.504 | 0.450 | 0.447 | 1.6e-145 | |
| UNIPROTKB|Q569Z1 | 688 | eif3b "Eukaryotic translation | 0.504 | 0.521 | 0.449 | 6.1e-144 |
| TAIR|locus:2143621 TIF3B1 "translation initiation factor 3B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2515 (890.4 bits), Expect = 2.0e-301, Sum P(2) = 2.0e-301
Identities = 460/570 (80%), Positives = 507/570 (88%)
Query: 120 QEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDE 179
QEA+ AKEK++GYKLD++HIFAVNMFDDFD+ M V +EW PP+ +PY PGENLQKWLTDE
Sbjct: 142 QEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQARPYVPGENLQKWLTDE 201
Query: 180 KARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVW 239
KARDQ VIRSG DTEV WND R PEPV+KR YWTES+VQWSPLGTYL T+H+QGAAVW
Sbjct: 202 KARDQLVIRSGPDTEVFWNDTRQKAPEPVHKRPYWTESYVQWSPLGTYLVTLHKQGAAVW 261
Query: 240 GGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR 299
GGA+TF RLMRY H VKL+DFSPGEKYLVTY S EPSNPRDA++V I +FDVRTG++MR
Sbjct: 262 GGADTFTRLMRYQHSMVKLVDFSPGEKYLVTYHSQEPSNPRDASKVEIKVFDVRTGRMMR 321
Query: 300 DFKGSADEFXXXXXXXXXXXSWPVFRWGGGKD-KYFAKLGKNMISVYETESFTLIDKKSL 358
DFKGSADEF SWPVFRW GGKD KYFAKL KN ISVYETE+F+LIDKKS+
Sbjct: 322 DFKGSADEFSIGGPGGVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSM 381
Query: 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418
KV+NV+D WSPTD I+SLFVPE GGGNQPA+V+LVQIPSK ELRQKNLFSVSDCKMYWQ
Sbjct: 382 KVDNVVDICWSPTDSILSLFVPEQGGGNQPAKVALVQIPSKVELRQKNLFSVSDCKMYWQ 441
Query: 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF 478
SSG+YLAVKVDRYTKTKKSTY+GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF
Sbjct: 442 SSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF 501
Query: 479 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQ 538
AVIHGD PRPD+SFYSM+TAQ+ GRVSKL TLK KQANALFWSP+G++I+LAGLKGFNGQ
Sbjct: 502 AVIHGDQPRPDVSFYSMKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQ 561
Query: 539 LEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL 598
LEF+NVDELETMATAEHFMATD+EWDPTGRYVATAVTSVHEMENGF IWSFNG +LYR L
Sbjct: 562 LEFFNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRIL 621
Query: 599 KDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKN 658
KDHFFQ WRPRPPSFLT EKEEEIAK LKKYSKKYEAEDQDVS+ LSEQ+REKR++LK
Sbjct: 622 KDHFFQLAWRPRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRKALKE 681
Query: 659 EWEKKISEWKRLHEEEKMERQMLRDGEASD 688
EWEK + +WK LHEEEK+ RQ LRDGE SD
Sbjct: 682 EWEKWVMQWKSLHEEEKLVRQNLRDGEVSD 711
|
|
| TAIR|locus:2145289 EIF3B-2 "eukaryotic translation initiation factor 3B-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2858 (1011.1 bits), Expect = 1.0e-297, P = 1.0e-297
Identities = 523/681 (76%), Positives = 592/681 (86%)
Query: 9 EIDATANRLGIDLLQVDLDSIQLPPGEDLGIISXXXXXXXXXXXXXXSGFGNIIVVDNLP 68
+ID +LGI+ V+LDSIQLPPG D GI S +GFGNIIVVD+LP
Sbjct: 6 DIDVLTAQLGINWSDVNLDSIQLPPGNDFGIESDDESVYQDDQSEFDTGFGNIIVVDHLP 65
Query: 69 VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 128
VVPKEKFEKLEGV++KIY+Q+GVIKE+GL MPVDP+T+ +LGYCFIE+NTPQEA+ AKEK
Sbjct: 66 VVPKEKFEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEK 125
Query: 129 TNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIR 188
++GYKLD++HIFAVNMFDDFD+ M V +EW PP+ +PY PGENLQKWLTD+KARDQ VIR
Sbjct: 126 SHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQERPYVPGENLQKWLTDDKARDQLVIR 185
Query: 189 SGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRL 248
G DTEV WNDAR KPEPV+KRSYWTES+VQWSP+GTYL T+H+QGAAVWGGA+TF RL
Sbjct: 186 FGHDTEVYWNDARQKKPEPVHKRSYWTESYVQWSPIGTYLVTLHKQGAAVWGGADTFTRL 245
Query: 249 MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEF 308
MRY H VKL+DFSPGEKYLVTY S EPSNPRDA++V I +FDVRTG++MRDFKGSADEF
Sbjct: 246 MRYQHSMVKLVDFSPGEKYLVTYHSQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEF 305
Query: 309 XXXXXXXXXXXSWPVFRWGGGKD-KYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFS 367
SWPVFRW GGKD KYFAKL KN ISVYETE+F+LIDKKS+KV+NV+D
Sbjct: 306 SIGGPGGVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDIC 365
Query: 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK 427
WSPTD I+SLFVPE GGGNQPA+V+LVQIPSK ELRQKNLFSVSDCKMYWQSSG+YLAVK
Sbjct: 366 WSPTDSILSLFVPEQGGGNQPAKVALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVK 425
Query: 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487
VDRYTKTKKSTY+GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD PR
Sbjct: 426 VDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPR 485
Query: 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547
PD+SFYSM+TAQ+ GRVSKL TLK KQANALFWSP+G++I+LAGLKGFNGQLEF+NVDEL
Sbjct: 486 PDVSFYSMKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDEL 545
Query: 548 ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLW 607
ETMATAEHFMATD+EWDPTGRYVAT+VT+VHEMENGF IWSFNG ++YR LKDHFFQ W
Sbjct: 546 ETMATAEHFMATDIEWDPTGRYVATSVTTVHEMENGFTIWSFNGNMVYRILKDHFFQLAW 605
Query: 608 RPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEW 667
RPRP SFLT EKEEEIAKNL+ YSK+YEAEDQDVS+ LSEQ+REKRR+L EW+K + +W
Sbjct: 606 RPRPASFLTAEKEEEIAKNLRNYSKRYEAEDQDVSLLLSEQDREKRRALNEEWQKWVMQW 665
Query: 668 KRLHEEEKMERQMLRDGEASD 688
K LHEEEK+ RQ LRDGE SD
Sbjct: 666 KSLHEEEKLVRQNLRDGEVSD 686
|
|
| ZFIN|ZDB-GENE-030131-2748 eif3ba "eukaryotic translation initiation factor 3, subunit Ba" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 4.2e-158, Sum P(2) = 4.2e-158
Identities = 171/370 (46%), Positives = 256/370 (69%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ ++M+S+YET S L++KKSLK+ + DFSWSP D II+ +VP
Sbjct: 296 WPIFKWSPD-GKFFARMTQDMLSIYETPSMGLLEKKSLKINGIKDFSWSPGDNIIAFWVP 354
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q PS+ E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 355 E--DKDIPARVTLMQFPSRNEMRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVT 412
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ D IIAFAWEP G +FAV+HG+SPR + SFY +++
Sbjct: 413 NFEIFRMREKQVPVDVVEM---KDSIIAFAWEPNGSKFAVLHGESPRINSSFYHVKSN-- 467
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDELETMATAEHFMAT 559
G++ + +QAN++FWSP G+F+VLAGL+ NG L F + + M AEH+MA+
Sbjct: 468 -GKIDLIKMFDKQQANSIFWSPQGQFLVLAGLRSSMNGALAFVDTSDCTMMNIAEHYMAS 526
Query: 560 DVEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPE 618
DVEWDPTGR+V T+V+ H+++N F +W+F G+LL + K+ F Q LWRPRPPS LT E
Sbjct: 527 DVEWDPTGRFVVTSVSWWSHKVDNAFWLWTFQGRLLQKNNKERFCQLLWRPRPPSLLTQE 586
Query: 619 KEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMER 678
+ + I K+LKKYSK +E +D+ + S++ +KRR++ E+ K +++E++ R
Sbjct: 587 QIKLIKKDLKKYSKIFEQKDRLSQSKASKELVDKRRTMMEEYRKHRKRAMDMYQEQRPLR 646
Query: 679 QMLRDGEASD 688
LR G +D
Sbjct: 647 LELRGGVDTD 656
|
|
| UNIPROTKB|P55884 EIF3B "Eukaryotic translation initiation factor 3 subunit B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 1.1e-146, Sum P(2) = 1.1e-146
Identities = 168/369 (45%), Positives = 256/369 (69%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VP
Sbjct: 426 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVP 484
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 485 E--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVT 542
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ + IIAFAWEP G +FAV+HG++PR +SFY ++ +
Sbjct: 543 NFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK---N 596
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATD 560
G++ + +QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+MA+D
Sbjct: 597 NGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASD 656
Query: 561 VEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEK 619
VEWDPTGRYV T+V+ H+++N + +W+F G+LL + KD F Q LWRPRPP+ L+ E+
Sbjct: 657 VEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQ 716
Query: 620 EEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQ 679
++I K+LKKYSK +E +D+ + S++ E+RR++ ++ K + L+ E+K ER
Sbjct: 717 IKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNERL 776
Query: 680 MLRDGEASD 688
LR G +D
Sbjct: 777 ELRGGVDTD 785
|
|
| UNIPROTKB|F1P969 EIF3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
Identities = 167/369 (45%), Positives = 256/369 (69%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VP
Sbjct: 425 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVP 483
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 484 E--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVT 541
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ + IIAFAWEP G +FAV+HG++PR +SFY ++ +
Sbjct: 542 NFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK---N 595
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATD 560
G++ + +QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+MA+D
Sbjct: 596 NGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASD 655
Query: 561 VEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEK 619
VEWDPTGRYV T+V+ H+++N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++
Sbjct: 656 VEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQ 715
Query: 620 EEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQ 679
++I K+LKKYSK +E +D+ + S++ E+RR++ ++ K + L+ E+K ER
Sbjct: 716 IKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKSERL 775
Query: 680 MLRDGEASD 688
LR G +D
Sbjct: 776 ELRGGVDTD 784
|
|
| UNIPROTKB|A7MB16 EIF3B "Eukaryotic translation initiation factor 3 subunit B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
Identities = 166/369 (44%), Positives = 255/369 (69%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VP
Sbjct: 398 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVP 456
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 457 E--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVT 514
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ + IIAFAWEP G +FAV+HG++PR +SFY ++ +
Sbjct: 515 NFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK---N 568
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATD 560
G++ + +QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+MA+D
Sbjct: 569 NGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASD 628
Query: 561 VEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEK 619
VEWDPTGRYV T+V+ H+++N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++
Sbjct: 629 VEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNSKDRFCQLLWRPRPPTLLSQDQ 688
Query: 620 EEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQ 679
++I K+LKKYSK +E +D+ + S++ E+RR++ ++ K + L+ E+K R
Sbjct: 689 IKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNARL 748
Query: 680 MLRDGEASD 688
LR G +D
Sbjct: 749 ELRGGVDTD 757
|
|
| MGI|MGI:106478 Eif3b "eukaryotic translation initiation factor 3, subunit B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 1.6e-145, Sum P(2) = 1.6e-145
Identities = 165/369 (44%), Positives = 256/369 (69%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VP
Sbjct: 415 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVP 473
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 474 E--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVT 531
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ + IIAFAWEP G +FAV+HG++PR +SFY +++
Sbjct: 532 NFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKSN-- 586
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATD 560
G++ + +QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+MA+D
Sbjct: 587 -GKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASD 645
Query: 561 VEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEK 619
VEWDPTGRYV T+V+ H+++N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++
Sbjct: 646 VEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQ 705
Query: 620 EEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQ 679
++I K+LKKYSK +E +D+ + S++ E+RR++ ++ + + L+ ++K ER
Sbjct: 706 IKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERL 765
Query: 680 MLRDGEASD 688
LR G +D
Sbjct: 766 ELRGGVDTD 774
|
|
| RGD|1309018 Eif3b "eukaryotic translation initiation factor 3, subunit B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 1.6e-145, Sum P(2) = 1.6e-145
Identities = 165/369 (44%), Positives = 256/369 (69%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VP
Sbjct: 409 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVP 467
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 468 E--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVT 525
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ + IIAFAWEP G +FAV+HG++PR +SFY +++
Sbjct: 526 NFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKSN-- 580
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATD 560
G++ + +QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+MA+D
Sbjct: 581 -GKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASD 639
Query: 561 VEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEK 619
VEWDPTGRYV T+V+ H+++N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++
Sbjct: 640 VEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQ 699
Query: 620 EEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQ 679
++I K+LKKYSK +E +D+ + S++ E+RR++ ++ + + L+ ++K ER
Sbjct: 700 IKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERL 759
Query: 680 MLRDGEASD 688
LR G +D
Sbjct: 760 ELRGGVDTD 768
|
|
| UNIPROTKB|Q4G061 Eif3b "Eukaryotic translation initiation factor 3 subunit B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 1.6e-145, Sum P(2) = 1.6e-145
Identities = 165/369 (44%), Positives = 256/369 (69%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VP
Sbjct: 409 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVP 467
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 468 E--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVT 525
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ + IIAFAWEP G +FAV+HG++PR +SFY +++
Sbjct: 526 NFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKSN-- 580
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATD 560
G++ + +QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+MA+D
Sbjct: 581 -GKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASD 639
Query: 561 VEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEK 619
VEWDPTGRYV T+V+ H+++N + +W+F G+LL + KD F Q LWRPRPP+ L+ ++
Sbjct: 640 VEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQ 699
Query: 620 EEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQ 679
++I K+LKKYSK +E +D+ + S++ E+RR++ ++ + + L+ ++K ER
Sbjct: 700 IKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERL 759
Query: 680 MLRDGEASD 688
LR G +D
Sbjct: 760 ELRGGVDTD 768
|
|
| UNIPROTKB|Q569Z1 eif3b "Eukaryotic translation initiation factor 3 subunit B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 6.1e-144, Sum P(2) = 6.1e-144
Identities = 166/369 (44%), Positives = 253/369 (68%)
Query: 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380
WP+F+W K+FA++ + +S+YET S L+DKKSLK+ + DFSWSP II+ +VP
Sbjct: 302 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKITGIKDFSWSPGGNIIAFWVP 360
Query: 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440
E + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR K + T
Sbjct: 361 E--DKDIPARVTLMQMPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGMVT 418
Query: 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500
FE+FR++E+ +P++V+E+ D IIAFAWEP G +FAV+HG+ PR +SFY ++ +
Sbjct: 419 NFEIFRMREKQVPVDVVEM---KDGIIAFAWEPNGSKFAVLHGEVPRISVSFYHVK---N 472
Query: 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATD 560
G++ + +QAN +FWSP G+F+VLAGL+ NG L F + + M AEH+ A+D
Sbjct: 473 NGKIELIKMYDKQQANTIFWSPQGQFLVLAGLRSMNGALAFVDTSDCTIMNIAEHYTASD 532
Query: 561 VEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEK 619
VEWDPTGRYV T+V+ H+++N + +W+F G+LL + KD F Q LWRPRPPS L+ ++
Sbjct: 533 VEWDPTGRYVITSVSWWSHKVDNAYWMWTFQGRLLQKNNKDRFCQLLWRPRPPSLLSQDQ 592
Query: 620 EEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQ 679
++I K+LKKYSK +E +D+ + S++ E+RR++ E++ +L+ E+K R
Sbjct: 593 IKQIKKDLKKYSKIFEQKDRLSQTKASKELIERRRAMMEEYKTYREMATKLYMEQKTARL 652
Query: 680 MLRDGEASD 688
+R G +D
Sbjct: 653 EIRGGVDTD 661
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A2Q908 | EIF3B_ASPNC | No assigned EC number | 0.3746 | 0.9058 | 0.8716 | yes | no |
| Q0E940 | EIF3B_DROME | No assigned EC number | 0.4014 | 0.8890 | 0.9173 | yes | no |
| Q6C1H8 | EIF3B_YARLI | No assigned EC number | 0.3597 | 0.8834 | 0.8772 | yes | no |
| Q54QW1 | EIF3B_DICDI | No assigned EC number | 0.3699 | 0.8820 | 0.9373 | yes | no |
| Q758X9 | EIF3B_ASHGO | No assigned EC number | 0.3338 | 0.8356 | 0.8084 | yes | no |
| Q4WKL7 | EIF3B_ASPFU | No assigned EC number | 0.3713 | 0.875 | 0.8418 | yes | no |
| A3LY29 | EIF3B_PICST | No assigned EC number | 0.3579 | 0.8511 | 0.8511 | yes | no |
| Q9C5Z1 | EIF3B_ARATH | No assigned EC number | 0.8039 | 0.9859 | 0.9859 | yes | no |
| B5E081 | EIF3B_DROPS | No assigned EC number | 0.3985 | 0.8511 | 0.8782 | yes | no |
| P0CN44 | EIF3B_CRYNJ | No assigned EC number | 0.3508 | 0.9115 | 0.8618 | yes | no |
| P56821 | EIF3B_TOBAC | No assigned EC number | 0.8260 | 0.9943 | 0.9847 | N/A | no |
| Q10425 | EIF3B_SCHPO | No assigned EC number | 0.3737 | 0.8707 | 0.8551 | yes | no |
| Q2URB7 | EIF3B_ASPOR | No assigned EC number | 0.3824 | 0.875 | 0.8407 | yes | no |
| Q7PZY1 | EIF3B_ANOGA | No assigned EC number | 0.3961 | 0.8539 | 0.8901 | yes | no |
| Q5BGH1 | EIF3B_EMENI | No assigned EC number | 0.3819 | 0.8567 | 0.8265 | yes | no |
| Q6BLY5 | EIF3B_DEBHA | No assigned EC number | 0.3663 | 0.8286 | 0.8205 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 712 | |||
| pfam08662 | 194 | pfam08662, eIF2A, Eukaryotic translation initiatio | 2e-93 | |
| COG5354 | 561 | COG5354, COG5354, Uncharacterized protein, contain | 5e-88 | |
| cd12278 | 84 | cd12278, RRM_eIF3B, RNA recognition motif in eukar | 9e-36 | |
| smart00360 | 73 | smart00360, RRM, RNA recognition motif | 4e-09 | |
| cd12370 | 76 | cd12370, RRM1_PUF60, RNA recognition motif 1 in (U | 2e-08 | |
| pfam00076 | 70 | pfam00076, RRM_1, RNA recognition motif | 2e-07 | |
| cd12240 | 78 | cd12240, RRM_NCBP2, RNA recognition motif found in | 3e-07 | |
| cd12365 | 73 | cd12365, RRM_RNPS1, RNA recognition motif in RNA-b | 8e-07 | |
| cd12320 | 76 | cd12320, RRM6_RBM19_RRM5_MRD1, RNA recognition mot | 2e-06 | |
| cd12284 | 73 | cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 | 5e-06 | |
| cd00590 | 72 | cd00590, RRM_SF, RNA recognition motif (RRM) super | 6e-06 | |
| cd12371 | 77 | cd12371, RRM2_PUF60, RNA recognition motif 2 in (U | 7e-06 | |
| cd12390 | 92 | cd12390, RRM3_RAVER, RNA recognition motif 3 in ri | 2e-05 | |
| cd12398 | 75 | cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot | 2e-05 | |
| cd12368 | 75 | cd12368, RRM3_RBM45, RNA recognition motif 3 in RN | 3e-05 | |
| cd12277 | 86 | cd12277, RRM3_MEI2_EAR1_like, RNA recognition moti | 3e-05 | |
| cd12650 | 78 | cd12650, RRM1_Hu, RNA recognition motif 1 in the H | 3e-05 | |
| cd12378 | 80 | cd12378, RRM1_I_PABPs, RNA recognition motif 1 in | 3e-05 | |
| TIGR01645 | 612 | TIGR01645, half-pint, poly-U binding splicing fact | 5e-05 | |
| cd12355 | 80 | cd12355, RRM_RBM18, RNA recognition motif in eukar | 1e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-04 | |
| cd12408 | 77 | cd12408, RRM_eIF3G_like, RNA recognition motif in | 2e-04 | |
| cd12307 | 74 | cd12307, RRM_NIFK_like, RNA recognition motif in n | 4e-04 | |
| cd12362 | 73 | cd12362, RRM3_CELF1-6, RNA recognition motif 3 in | 4e-04 | |
| cd12313 | 84 | cd12313, RRM1_RRM2_RBM5_like, RNA recognition moti | 8e-04 | |
| cd12411 | 89 | cd12411, RRM_ist3_like, RNA recognition motif in i | 0.001 | |
| cd12375 | 77 | cd12375, RRM1_Hu_like, RNA recognition motif 1 in | 0.001 | |
| cd12382 | 80 | cd12382, RRM_RBMX_like, RNA recognition motif in h | 0.002 | |
| cd12311 | 73 | cd12311, RRM_SRSF2_SRSF8, RNA recognition motif in | 0.003 | |
| cd12344 | 81 | cd12344, RRM1_SECp43_like, RNA recognition motif 1 | 0.004 |
| >gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 2e-93
Identities = 83/203 (40%), Positives = 112/203 (55%), Gaps = 11/203 (5%)
Query: 405 KNLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463
K+ F KM W +G YL V V KT KS Y F L+ I E P EV+ELD +
Sbjct: 1 KSFFKADKVKMKWNKNGTYLLVLVSTDVDKTNKSYYGEFNLYLIGETGGPDEVVELDKEG 60
Query: 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523
I FAW P G FAVI+G P I+F+ ++ + + +L + N +FWSP
Sbjct: 61 P-IHDFAWSPNGKEFAVIYGYMPA-KITFFDLK-------GNVIHSLGEQPRNTIFWSPF 111
Query: 524 GRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTS-VHEMEN 582
GR ++LAG GQ+EF++V + +ATAE ATD EW P GRY TA TS ++N
Sbjct: 112 GRLVLLAGFGNLAGQIEFWDVKNKKKIATAEASNATDCEWSPDGRYFLTATTSPRLRVDN 171
Query: 583 GFNIWSFNGKLLYRTLKDHFFQF 605
GF IW ++GKL+Y+ D +Q
Sbjct: 172 GFKIWHYSGKLVYKYDFDELYQV 194
|
This is a family of eukaryotic translation initiation factors. Length = 194 |
| >gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 5e-88
Identities = 166/580 (28%), Positives = 261/580 (45%), Gaps = 72/580 (12%)
Query: 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGA 242
QF + V WN ++ ++ W ++V SPLGTYL + H G WGG
Sbjct: 3 SQFPLDYSAVISVFWN-SQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGP 61
Query: 243 NTFNRLMRYAHPQVKLIDFSPGEKYLVTYS-------SHEPSNPRDANRVVINIFDVRTG 295
+ +L+R+ HP VK +DFSP EKYLVT+S E S N V + +D+ +G
Sbjct: 62 S-KAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV--WDIASG 118
Query: 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYE-TESFTLID 354
++ F G + + + WPV ++ DKY A++ + + ++E T++
Sbjct: 119 MIVFSFNGISQPY----------LGWPVLKFSI-DDKYVARVVGSSLYIHEITDNIEEHP 167
Query: 355 KKSLKVENVMDFSWSP--TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412
K+L+ ++DFS SP ++ + PE N+PA V ++ IP L KNLF VS
Sbjct: 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKL--NKPAMVRILSIPKNSVLVTKNLFKVSG 225
Query: 413 CKMYWQSSGDYLAVKVDRYTKTKKSTY--TGFELFRIKERDIPIEVLELDNKNDKIIAFA 470
++ WQ G YL V V +TK+ KS + + L RI ER IP+E D + F
Sbjct: 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD----LKDPVHDFT 281
Query: 471 WEPKGHRFAVIHGDSP--------RPDISFYSMRTAQHA------GRVSKLTTLKGKQAN 516
WEP RFAVI G P R ++ FY ++ R Q N
Sbjct: 282 WEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGN 341
Query: 517 ALFWSPSGRFIVLAGLKGFNGQ-------LEFYNVD------------ELETMATAEHFM 557
+ P+GRF V G N +FY+ D +L + A+ F
Sbjct: 342 IEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFE 401
Query: 558 ATDVEWDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLT 616
T++ WDP+G+YV T+ + H++E+G+ I+ G L + F F WRP PPS LT
Sbjct: 402 LTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLT 461
Query: 617 PEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEK---KISEWKRLHEE 673
E ++ K + +E + + +++ L +W + + L +
Sbjct: 462 IESAKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRKKELVEQWPEYSDEDKIRSLLKKL 521
Query: 674 EKMERQMLRDGEASDEEEEYEAKEVE-VEEVLDVTEEVEE 712
+E R + +E E + ++E EEVL +E+ E
Sbjct: 522 RAIEALKERM-RSGEELEVIQVNKIETEEEVLSELKELVE 560
|
Length = 561 |
| >gnl|CDD|240724 cd12278, RRM_eIF3B, RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 9e-36
Identities = 49/85 (57%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNT 118
N++VVD LPVV +EK EKL+ V+RKI+S+ GV K G++MPVD ET K+ GY F+E+ T
Sbjct: 1 DNVVVVDGLPVVGEEKLEKLKKVLRKIFSKFGVGKIVGIYMPVD-ETGKTKGYAFVEFAT 59
Query: 119 PQEAELAKEKTNGYKLDRAHIFAVN 143
P+EA+ A + NGYKLD+ H FAVN
Sbjct: 60 PEEAKEAVKALNGYKLDKKHTFAVN 84
|
This subfamily corresponds to the RRM domain in eukaryotic translation initiation factor 3 (eIF-3), a large multisubunit complex that plays a central role in the initiation of translation by binding to the 40 S ribosomal subunit and promoting the binding of methionyl-tRNAi and mRNA. eIF-3B, also termed eIF-3 subunit 9, or Prt1 homolog, eIF-3-eta, eIF-3 p110, or eIF-3 p116, is the major scaffolding subunit of eIF-3. It interacts with eIF-3 subunits A, G, I, and J. eIF-3B contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is involved in the interaction with eIF-3J. The interaction between eIF-3B and eIF-3J is crucial for the eIF-3 recruitment to the 40 S ribosomal subunit. eIF-3B also binds directly to domain III of the internal ribosome-entry site (IRES) element of hepatitis-C virus (HCV) RNA through its N-terminal RRM, which may play a critical role in both cap-dependent and cap-independent translation. Additional research has shown that eIF-3B may function as an oncogene in glioma cells and can be served as a potential therapeutic target for anti-glioma therapy. This family also includes the yeast homolog of eIF-3 subunit B (eIF-3B, also termed PRT1 or eIF-3 p90) that interacts with the yeast homologs of eIF-3 subunits A(TIF32), G(TIF35), I(TIF34), J(HCR1), and E(Pci8). In yeast, eIF-3B (PRT1) contains an N-terminal RRM that is directly involved in the interaction with eIF-3A (TIF32) and eIF-3J (HCR1). In contrast to its human homolog, yeast eIF-3B (PRT1) may have potential to bind its total RNA through its RRM domain. . Length = 84 |
| >gnl|CDD|214636 smart00360, RRM, RNA recognition motif | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-09
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V NLP + E +R+++S+ G ++ + + D ET KS G+ F+E+ + ++
Sbjct: 2 LFVGNLP------PDTTEEELRELFSKFGKVES--VRLVRDKETGKSKGFAFVEFESEED 53
Query: 122 AELAKEKTNGYKLD 135
AE A E NG +LD
Sbjct: 54 AEKALEALNGKELD 67
|
Length = 73 |
| >gnl|CDD|240816 cd12370, RRM1_PUF60, RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
FE E IR+ +S G IK + M DP T K G+ F+EY P+ A+LA E+ NG L
Sbjct: 10 FELGEDTIRQAFSPFGPIKS--IDMSWDPVTMKHKGFAFVEYEVPEAAQLALEQMNGVML 67
|
This subfamily corresponds to the RRM1 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 76 |
| >gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V NLP + E ++ ++S+ G I+ + + D ET +S G+ F+E+ ++
Sbjct: 1 LFVGNLP------PDTTEEDLKDLFSKFGPIES--IRIVRD-ETGRSKGFAFVEFEDEED 51
Query: 122 AELAKEKTNGYKLD 135
AE A E NG +L
Sbjct: 52 AEKALEALNGKELG 65
|
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70 |
| >gnl|CDD|240686 cd12240, RRM_NCBP2, RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-07
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V NL E+ I +++S+ G IK + M +D T+ G+CF+EY T ++
Sbjct: 1 LYVGNLSFYTTEEQ------IYELFSRCGDIKR--IIMGLDRFTKTPCGFCFVEYYTRED 52
Query: 122 AELAKEKTNGYKLD 135
AE A + NG KLD
Sbjct: 53 AENAVKYLNGTKLD 66
|
This subfamily corresponds to the RRM of CBP20, also termed nuclear cap-binding protein subunit 2 (NCBP2), or cell proliferation-inducing gene 55 protein, or NCBP-interacting protein 1 (NIP1). CBP20 is the small subunit of the nuclear cap binding complex (CBC), which is a conserved eukaryotic heterodimeric protein complex binding to 5'-capped polymerase II transcripts and plays a central role in the maturation of pre-mRNA and uracil-rich small nuclear RNA (U snRNA). CBP20 is most likely responsible for the binding of capped RNA. It contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and interacts with the second and third domains of CBP80, the large subunit of CBC. . Length = 78 |
| >gnl|CDD|240811 cd12365, RRM_RNPS1, RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 8e-07
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135
+++I+S G +K+ + +P+D E GY ++E+ +P++AE A + +G ++D
Sbjct: 15 LKEIFSNYGTVKD--VDLPIDREVNLPRGYAYVEFESPEDAEKAIKHMDGGQID 66
|
This subfamily corresponds to the RRM of RNPS1 and its eukaryotic homologs. RNPS1, also termed RNA-binding protein prevalent during the S phase, or SR-related protein LDC2, was originally characterized as a general pre-mRNA splicing activator, which activates both constitutive and alternative splicing of pre-mRNA in vitro.It has been identified as a protein component of the splicing-dependent mRNP complex, or exon-exon junction complex (EJC), and is directly involved in mRNA surveillance. Furthermore, RNPS1 is a splicing regulator whose activator function is controlled in part by CK2 (casein kinase II) protein kinase phosphorylation. It can also function as a squamous-cell carcinoma antigen recognized by T cells-3 (SART3)-binding protein, and is involved in the regulation of mRNA splicing. RNPS1 contains an N-terminal serine-rich (S) domain, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and the C-terminal arginine/serine/proline-rich (RS/P) domain. . Length = 73 |
| >gnl|CDD|240766 cd12320, RRM6_RBM19_RRM5_MRD1, RNA recognition motif 6 in RNA-binding protein 19 (RBM19 or RBD-1) and RNA recognition motif 5 in multiple RNA-binding domain-containing protein 1 (MRD1) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP 119
++V N+P FE + +R+++S G +K + +P + G+ F+E+ T
Sbjct: 1 TKLIVRNVP------FEATKKELRELFSPFGQVK--SVRLPKKFD-GSHRGFAFVEFVTK 51
Query: 120 QEAELAKEK 128
QEA+ A E
Sbjct: 52 QEAQNAMEA 60
|
This subfamily corresponds to the RRM6 of RBM19 and RRM5 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well-conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 76 |
| >gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 79 EGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E +R I+ G I + + + DPET +S GY FI++ ++A+ A E+ NG++L
Sbjct: 12 EDDLRGIFEPFGEI--EFVQLQRDPETGRSKGYGFIQFADAEDAKKALEQLNGFEL 65
|
This subfamily corresponds to the RRM2 of RBM39 (also termed HCC1), a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73 |
| >gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V NLP + E +R+++S+ G I+ + + D KS G+ F+E+ +P++
Sbjct: 1 LFVGNLP------PDTTEEDLRELFSKFGEIES--VRIVRDK-DGKSKGFAFVEFESPED 51
Query: 122 AELAKEKTNGYKLD 135
AE A E NG +LD
Sbjct: 52 AEKALEALNGKELD 65
|
RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72 |
| >gnl|CDD|240817 cd12371, RRM2_PUF60, RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-06
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141
I+ ++ G IK L DPET K GY FIEY PQ A+ A I +
Sbjct: 17 IKSVFEAFGKIKSCSL--APDPETGKHKGYGFIEYENPQSAQDA-------------IAS 61
Query: 142 VNMFDDFDKFMKV 154
+N+FD + ++V
Sbjct: 62 MNLFDLGGQQLRV 74
|
This subfamily corresponds to the RRM2 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 77 |
| >gnl|CDD|240836 cd12390, RRM3_RAVER, RNA recognition motif 3 in ribonucleoprotein PTB-binding raver-1, raver-2 and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 64 VDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAE 123
VD LP K + ++RK++SQ+G L + P Q G+ F+EY T ++AE
Sbjct: 7 VDRLP-----KTFRDVSILRKLFSQVGKPTFCQLAI--APNGQ-PRGFAFVEYATAEDAE 58
Query: 124 LAKEKTNGYKLDRAHI 139
A++ NG+ L + I
Sbjct: 59 EAQQALNGHSLQGSPI 74
|
This subfamily corresponds to the RRM3 of raver-1 and raver-2. Raver-1 is a ubiquitously expressed heterogeneous nuclear ribonucleoprotein (hnRNP) that serves as a co-repressor of the nucleoplasmic splicing repressor polypyrimidine tract-binding protein (PTB)-directed splicing of select mRNAs. It shuttles between the cytoplasm and the nucleus and can accumulate in the perinucleolar compartment, a dynamic nuclear substructure that harbors PTB. Raver-1 also modulates focal adhesion assembly by binding to the cytoskeletal proteins, including alpha-actinin, vinculin, and metavinculin (an alternatively spliced isoform of vinculin) at adhesion complexes, particularly in differentiated muscle tissue. Raver-2 is a novel member of the heterogeneous nuclear ribonucleoprotein (hnRNP) family. It shows high sequence homology to raver-1. Raver-2 exerts a spatio-temporal expression pattern during embryogenesis and is mainly limited to differentiated neurons and glia cells. Although it displays nucleo-cytoplasmic shuttling in heterokaryons, raver2 localizes to the nucleus in glia cells and neurons. Raver-2 can interact with PTB and may participate in PTB-mediated RNA-processing. However, there is no evidence indicating that raver-2 can bind to cytoplasmic proteins. Both, raver-1 and raver-2, contain three N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two putative nuclear localization signals (NLS) at the N- and C-termini, a central leucine-rich region, and a C-terminal region harboring two [SG][IL]LGxxP motifs. They binds to RNA through the RRMs. In addition, the two [SG][IL]LGxxP motifs serve as the PTB-binding motifs in raver1. However, raver-2 interacts with PTB through the SLLGEPP motif only. . Length = 92 |
| >gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-05
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V N+P ++ E + +I+S++G + + D +T K GY F E+ +
Sbjct: 1 VFVGNIP------YDATEEQLIEIFSEVGPVV--SFRLVTDRDTGKPKGYGFCEFEDIET 52
Query: 122 AELAKEKTNGYKL 134
A A NGY+
Sbjct: 53 AASAIRNLNGYEF 65
|
This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75 |
| >gnl|CDD|240814 cd12368, RRM3_RBM45, RNA recognition motif 3 in RNA-binding protein 45 (RBM45) and similar proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 102 DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
DP T KS G+ ++ Y+ P A AKEK NG++
Sbjct: 34 DPYTGKSKGFAYVTYSNPASAIYAKEKLNGFEY 66
|
This subfamily corresponds to the RRM3 of RBM45, also termed developmentally-regulated RNA-binding protein 1 (DRB1), a new member of RNA recognition motif (RRM)-type neural RNA-binding proteins, which expresses under spatiotemporal control. It is encoded by gene drb1 that is expressed in neurons, not in glial cells. RBM45 predominantly localizes in cytoplasm of cultured cells and specifically binds to poly(C) RNA. It could play an important role during neurogenesis. RBM45 carries four RRMs, also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 75 |
| >gnl|CDD|240723 cd12277, RRM3_MEI2_EAR1_like, RNA recognition motif 3 in Mei2-like proteins and terminal EAR1-like proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 66 NLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELA 125
N+P K E L ++ + D L++P+D + + ++GY FI + P+ AE
Sbjct: 5 NIP--NKYTQEMLLQLLDEHGKGG---AYDFLYLPIDFKNKCNVGYAFINFVNPEYAEKF 59
Query: 126 KEKTNGYKLDRAH 138
+ NG K
Sbjct: 60 YKAFNGKKWKNFK 72
|
This subfamily corresponds to the RRM3 of Mei2-like proteins from plant and fungi, terminal EAR1-like proteins from plant, and other eukaryotic homologs. Mei2-like proteins represent an ancient eukaryotic RNA-binding proteins family whose corresponding Mei2-like genes appear to have arisen early in eukaryote evolution, been lost from some lineages such as Saccharomyces cerevisiae and metazoans, and diversified in the plant lineage. The plant Mei2-like genes may function in cell fate specification during development, rather than as stimulators of meiosis. In the fission yeast Schizosaccharomyces pombe, the Mei2 protein is an essential component of the switch from mitotic to meiotic growth. S. pombe Mei2 stimulates meiosis in the nucleus upon binding a specific non-coding RNA. The terminal EAR1-like protein 1 and 2 (TEL1 and TEL2) are mainly found in land plants. They may play a role in the regulation of leaf initiation. All members in this family are putative RNA-binding proteins carrying three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). In addition to the RRMs, the terminal EAR1-like proteins also contain TEL characteristic motifs that allow sequence and putative functional discrimination between them and Mei2-like proteins. . Length = 86 |
| >gnl|CDD|241094 cd12650, RRM1_Hu, RNA recognition motif 1 in the Hu proteins family | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
IR ++S IG I+ L D T +SLGY F+ Y P++AE A NG +L
Sbjct: 18 IRSLFSSIGEIESCKLIR--DKVTGQSLGYGFVNYVDPEDAEKAINTLNGLRL 68
|
This subfamily corresponds to the RRM1 of the Hu proteins family which represents a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is the ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. HuR has an anti-apoptotic function during early cell stress response. It binds to mRNAs and enhances the expression of several anti-apoptotic proteins, such as p21waf1, p53, and prothymosin alpha. HuR also has pro-apoptotic function by promoting apoptosis when cell death is unavoidable. Furthermore, HuR may be important in muscle differentiation, adipogenesis, suppression of inflammatory response and modulation of gene expression in response to chronic ethanol exposure and amino acid starvation. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 78 |
| >gnl|CDD|240824 cd12378, RRM1_I_PABPs, RNA recognition motif 1 in type I polyadenylate-binding proteins | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-05
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 16/59 (27%)
Query: 79 EGVIRKIYSQIGVIKEDGLWMPV-------DPETQKSLGYCFIEYNTPQEAELAKEKTN 130
E ++ +I+S G PV D T++SLGY ++ + P +AE A + N
Sbjct: 13 EAMLYEIFSPAG---------PVLSIRVCRDLITRRSLGYAYVNFQNPADAERALDTLN 62
|
This subfamily corresponds to the RRM1 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is a ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. Moreover, PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammals, such as ovary and testis. It may play an important role in germ cell development. Moreover, unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 80 |
| >gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG 131
FE E IR+ + G IK + M DP T K G+ F+EY P+ A+LA E+ NG
Sbjct: 117 FELREDTIRRAFDPFGPIKS--INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG 171
|
The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612 |
| >gnl|CDD|240801 cd12355, RRM_RBM18, RNA recognition motif in eukaryotic RNA-binding protein 18 and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 82 IRKIYSQIGVIKE-DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG 131
+ K++S+ G IK+ D L+ P + GYCF+ + T +EAE A + NG
Sbjct: 16 LLKLFSKYGKIKKFDFLFHKSGPLKGQPRGYCFVTFETKEEAEKALKSLNG 66
|
This subfamily corresponds to the RRM of RBM18, a putative RNA-binding protein containing a well-conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The biological role of RBM18 remains unclear. . Length = 80 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 60/329 (18%), Positives = 120/329 (36%), Gaps = 78/329 (23%)
Query: 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAG 318
+ FSP K L T S + + ++D+ TG+++R KG TG V
Sbjct: 15 VAFSPDGKLLATGS---------GDGTIK-VWDLETGELLRTLKG--------HTGPVRD 56
Query: 319 VSWPVFRWG-----GGKDKYFAKLGKNMISVYETESFTLIDKKSLK--VENVMDFSWSPT 371
V+ G G DK I +++ E+ + ++L V ++SP
Sbjct: 57 VAA--SADGTYLASGSSDK--------TIRLWDLETGECV--RTLTGHTSYVSSVAFSPD 104
Query: 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELR--QKNLFSVSDCKMYWQSSGDYLAV-KV 428
I+S + + + + + L + + V+ + G ++A
Sbjct: 105 GRILS------SSSRD-KTIKVWDVETGKCLTTLRGHTDWVNSVA--FSPDGTFVASSSQ 155
Query: 429 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488
D K L+ ++ + L + + A+ P G + D
Sbjct: 156 DGTIK----------LWDLRT-GKCVATLTGHTGE--VNSVAFSPDGEKLLSSSSDG--- 199
Query: 489 DISFYSMRTAQHAGRVSKLTTLKGKQA--NALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546
I + + T + L TL+G + N++ +SP G + +G + +++
Sbjct: 200 TIKLWDLSTGKC------LGTLRGHENGVNSVAFSPDGYLLASGS---EDGTIRVWDLRT 250
Query: 547 LETMAT-AEHFMA-TDVEWDPTGRYVATA 573
E + T + H + T + W P G+ +A+
Sbjct: 251 GECVQTLSGHTNSVTSLAWSPDGKRLASG 279
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 2e-04
Identities = 54/347 (15%), Positives = 109/347 (31%), Gaps = 66/347 (19%)
Query: 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315
V + FSP K L + SS + + I ++D+RTGK + G T
Sbjct: 158 VTSLAFSPDGKLLASGSSLDGT---------IKLWDLRTGKPLSTLAGH--------TDP 200
Query: 316 VAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372
V+ +++ D I +++ + L+ + + S+SP
Sbjct: 201 VSSLAFS-------PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG 253
Query: 373 PIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431
+++ G + R+ ++ S + SV + G LA
Sbjct: 254 SLLA-----SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA--FSPDGKLLA------ 300
Query: 432 TKTKKSTYTGFELFRIKERDI----PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487
+G ++ D+ + L L + + ++ P G D
Sbjct: 301 --------SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547
I + +RT + T ++ +SP GR + G + L
Sbjct: 353 --IRLWDLRTGK-----PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 548 ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594
+ T +++ P G+ +A+ + +W L
Sbjct: 406 RNLDGH-TSRVTSLDFSPDGKSLASGSSDNT-----IRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|240854 cd12408, RRM_eIF3G_like, RNA recognition motif in eukaryotic translation initiation factor 3 subunit G (eIF-3G) and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 100 PVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135
D ET +S G+ F+ ++T ++AE A EK NG+ D
Sbjct: 32 AKDKETGQSRGFAFVTFHTREDAERAIEKLNGFGYD 67
|
This subfamily corresponds to the RRM of eIF-3G and similar proteins. eIF-3G, also termed eIF-3 subunit 4, or eIF-3-delta, or eIF3-p42, or eIF3-p44, is the RNA-binding subunit of eIF3, a large multisubunit complex that plays a central role in the initiation of translation by binding to the 40 S ribosomal subunit and promoting the binding of methionyl-tRNAi and mRNA. eIF-3G binds 18 S rRNA and beta-globin mRNA, and therefore appears to be a nonspecific RNA-binding protein. eIF-3G is one of the cytosolic targets and interacts with mature apoptosis-inducing factor (AIF). eIF-3G contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). This family also includes yeast eIF3-p33, a homolog of vertebrate eIF-3G, plays an important role in the initiation phase of protein synthesis in yeast. It binds both, mRNA and rRNA, fragments due to an RRM near its C-terminus. . Length = 77 |
| >gnl|CDD|240753 cd12307, RRM_NIFK_like, RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 4e-04
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132
+RK +SQ G + L + +T KS GY F+E+ +P+ A++ E N Y
Sbjct: 16 LRKYFSQFGTVTR--LRLSRSKKTGKSKGYAFVEFESPEVAKIVAETMNNY 64
|
This subgroup corresponds to the RRM of NIFK and Nop15p. NIFK, also termed MKI67 FHA domain-interacting nucleolar phosphoprotein, or nucleolar phosphoprotein Nopp34, is a putative RNA-binding protein interacting with the forkhead associated (FHA) domain of pKi-67 antigen in a mitosis-specific and phosphorylation-dependent manner. It is nucleolar in interphase but associates with condensed mitotic chromosomes. This family also includes Saccharomyces cerevisiae YNL110C gene encoding ribosome biogenesis protein 15 (Nop15p), also termed nucleolar protein 15. Both, NIFK and Nop15p, contain an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 74 |
| >gnl|CDD|240808 cd12362, RRM3_CELF1-6, RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 101 VDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
VD T +S + F+ Y+ P+ A+ A + NG+++ +
Sbjct: 32 VDKNTGQSKCFGFVSYDNPESAQAAIKAMNGFQVGGKRL 70
|
This subgroup corresponds to the RRM3 of the CUGBP1 and ETR-3-like factors (CELF) or BRUNOL (Bruno-like) proteins, a family of structurally related RNA-binding proteins involved in the regulation of pre-mRNA splicing in the nucleus and in the control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also termed BRUNOL-2, or CUG-BP1, or NAPOR, or EDEN-BP), CELF-2 (also termed BRUNOL-3, or ETR-3, or CUG-BP2, or NAPOR-2), CELF-3 (also termed BRUNOL-1, or TNRC4, or ETR-1, or CAGH4, or ER DA4), CELF-4 (also termed BRUNOL-4), CELF-5 (also termed BRUNOL-5), CELF-6 (also termed BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. . Length = 73 |
| >gnl|CDD|240759 cd12313, RRM1_RRM2_RBM5_like, RNA recognition motif 1 and 2 in RNA-binding protein 5 (RBM5) and similar proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 8e-04
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 22/80 (27%)
Query: 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG--------VIKEDGLWMPVDPETQKSLGY 111
N +++ L + E I + S I +I+ D T S G+
Sbjct: 3 NTLILRGLDL------LTTEEDILQALSAIASVPIKDVRLIR--------DKLTGTSRGF 48
Query: 112 CFIEYNTPQEAELAKEKTNG 131
F+E+ + ++A + N
Sbjct: 49 AFVEFPSLEDATQWMDALNN 68
|
This subfamily includes the RRM1 and RRM2 of RNA-binding protein 5 (RBM5 or LUCA15 or H37) and RNA-binding protein 10 (RBM10 or S1-1), and the RRM2 of RNA-binding protein 6 (RBM6 or NY-LU-12 or g16 or DEF-3). These RBMs share high sequence homology and may play an important role in regulating apoptosis. RBM5 is a known modulator of apoptosis. It may also act as a tumor suppressor or an RNA splicing factor. RBM6 has been predicted to be a nuclear factor based on its nuclear localization signal. Both, RBM6 and RBM5, specifically bind poly(G) RNA. RBM10 is a paralog of RBM5. It may play an important role in mRNA generation, processing and degradation in several cell types. The rat homolog of human RBM10 is protein S1-1, a hypothetical RNA binding protein with poly(G) and poly(U) binding capabilities. All family members contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two C2H2-type zinc fingers, and a G-patch/D111 domain. . Length = 84 |
| >gnl|CDD|240857 cd12411, RRM_ist3_like, RNA recognition motif in ist3 family | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
I + LP +E EG I ++SQ G I + + D +T KS G+ F+ Y +
Sbjct: 12 IYIGGLP------YELTEGDILCVFSQYGEI--VDINLVRDKKTGKSKGFAFLAYEDQRS 63
Query: 122 AELAKEKTNGYKL 134
LA + NG KL
Sbjct: 64 TILAVDNLNGIKL 76
|
This subfamily corresponds to the RRM of the ist3 family that includes fungal U2 small nuclear ribonucleoprotein (snRNP) component increased sodium tolerance protein 3 (ist3), X-linked 2 RNA-binding motif proteins (RBMX2) found in Metazoa and plants, and similar proteins. Gene IST3 encoding ist3, also termed U2 snRNP protein SNU17 (Snu17p), is a novel yeast Saccharomyces cerevisiae protein required for the first catalytic step of splicing and for progression of spliceosome assembly. It binds specifically to the U2 snRNP and is an intrinsic component of prespliceosomes and spliceosomes. Yeast ist3 contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In the yeast pre-mRNA retention and splicing complex, the atypical RRM of ist3 functions as a scaffold that organizes the other two constituents, Bud13p (bud site selection 13) and Pml1p (pre-mRNA leakage 1). Fission yeast Schizosaccharomyces pombe gene cwf29 encoding ist3, also termed cell cycle control protein cwf29, is an RNA-binding protein complexed with cdc5 protein 29. It also contains one RRM. The biological function of RBMX2 remains unclear. It shows high sequence similarity to yeast ist3 protein and harbors one RRM as well. . Length = 89 |
| >gnl|CDD|240821 cd12375, RRM1_Hu_like, RNA recognition motif 1 in the Hu proteins family, Drosophila sex-lethal (SXL), and similar proteins | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 102 DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
D T +SLGY F++Y +A+ A NG+++ +
Sbjct: 35 DRITGQSLGYGFVDYVDENDAQKAINTLNGFEIRNKRL 72
|
This subfamily corresponds to the RRM1 of Hu proteins and SXL. The Hu proteins family represents a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. This family also includes the sex-lethal protein (SXL) from Drosophila melanogaster. SXL governs sexual differentiation and X chromosome dosage compensation in flies. It induces female-specific alternative splicing of the transformer (tra) pre-mRNA by binding to the tra uridine-rich polypyrimidine tract at the non-sex-specific 3' splice site during the sex-determination process. SXL binds to its own pre-mRNA and promotes female-specific alternative splicing. It contains an N-terminal Gly/Asn-rich domain that may be responsible for the protein-protein interaction, and tandem RRMs that show high preference to bind single-stranded, uridine-rich target RNA transcripts. . Length = 77 |
| >gnl|CDD|240828 cd12382, RRM_RBMX_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 79 EGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135
E + ++S+ G ++E L DPET +S G+ F+ + + ++A+ A NG +L+
Sbjct: 15 EKELEALFSKFGRVEEVLLMK--DPETGESRGFGFVTFESVEDADAAIRDLNGKELE 69
|
This subfamily corresponds to the RRM domain of hnRNP G, also termed glycoprotein p43 or RBMX, an RNA-binding motif protein located on the X chromosome. It is expressed ubiquitously and has been implicated in the splicing control of several pre-mRNAs. Moreover, hnRNP G may function as a regulator of transcription for SREBP-1c and GnRH1. Research has shown that hnRNP G may also act as a tumor-suppressor since it upregulates the Txnip gene and promotes the fidelity of DNA end-joining activity. In addition, hnRNP G appears to play a critical role in proper neural development of zebrafish and frog embryos. The family also includes several paralogs of hnRNP G, such as hRBMY and hnRNP G-T (also termed RNA-binding motif protein, X-linked-like-2). Both, hRBMY and hnRNP G-T, are exclusively expressed in testis and critical for male fertility. Like hnRNP G, hRBMY and hnRNP G-T interact with factors implicated in the regulation of pre-mRNA splicing, such as hTra2-beta1 and T-STAR. Although members in this family share a high conserved N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), they appear to recognize different RNA targets. For instance, hRBMY interacts specifically with a stem-loop structure in which the loop is formed by the sequence CA/UCAA. In contrast, hnRNP G associates with single stranded RNA sequences containing a CCA/C motif. In addition to the RRM, hnRNP G contains a nascent transcripts targeting domain (NTD) in the middle region and a novel auxiliary RNA-binding domain (RBD) in its C-terminal region. The C-terminal RBD exhibits distinct RNA binding specificity, and would play a critical role in the regulation of alternative splicing by hnRNP G. . Length = 80 |
| >gnl|CDD|240757 cd12311, RRM_SRSF2_SRSF8, RNA recognition motif in serine/arginine-rich splicing factor SRSF2, SRSF8 and similar proteins | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 64 VDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAE 123
VDNL + +R+++ + G + + +++P D T++S G+ F+ + ++AE
Sbjct: 3 VDNLT------YRTTPDDLRRVFEKYGEVGD--VYIPRDRYTRESRGFAFVRFYDKRDAE 54
Query: 124 LAKEKTNGYKLDRAHI 139
A + +G +LD +
Sbjct: 55 DAMDAMDGKELDGREL 70
|
This subfamily corresponds to the RRM of SRSF2 and SRSF8. SRSF2, also termed protein PR264, or splicing component, 35 kDa (splicing factor SC35 or SC-35), is a prototypical SR protein that plays important roles in the alternative splicing of pre-mRNA. It is also involved in transcription elongation by directly or indirectly mediating the recruitment of elongation factors to the C-terminal domain of polymerase II. SRSF2 is exclusively localized in the nucleus and is restricted to nuclear processes. It contains a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a C-terminal RS domain rich in serine-arginine dipeptides. The RRM is responsible for the specific recognition of 5'-SSNG-3' (S=C/G) RNA. In the regulation of alternative splicing events, it specifically binds to cis-regulatory elements on the pre-mRNA. The RS domain modulates SRSF2 activity through phosphorylation, directly contacts RNA, and promotes protein-protein interactions with the spliceosome. SRSF8, also termed SRP46 or SFRS2B, is a novel mammalian SR splicing factor encoded by a PR264/SC35 functional retropseudogene. SRSF8 is localized in the nucleus and does not display the same activity as PR264/SC35. It functions as an essential splicing factor in complementing a HeLa cell S100 extract deficient in SR proteins. Like SRSF2, SRSF8 contains a single N-terminal RRM and a C-terminal RS domain. . Length = 73 |
| >gnl|CDD|240790 cd12344, RRM1_SECp43_like, RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 102 DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL-DRAHIFAVN 143
+ +T KS GY F+E+ T + AE A + NG + + F +N
Sbjct: 34 NKQTGKSAGYGFVEFATHEAAEQALQSLNGKPIPNTQQRFRLN 76
|
This subfamily corresponds to the RRM1 in tRNA selenocysteine-associated protein 1 (SECp43), yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8, and similar proteins. SECp43 is an RNA-binding protein associated specifically with eukaryotic selenocysteine tRNA [tRNA(Sec)]. It may play an adaptor role in the mechanism of selenocysteine insertion. SECp43 is located primarily in the nucleus and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal polar/acidic region. Yeast proteins, NGR1 and NAM8, show high sequence similarity with SECp43. NGR1 is a putative glucose-repressible protein that binds both RNA and single-stranded DNA (ssDNA). It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains three RRMs, two of which are followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the C-terminus which also harbors a methionine-rich region. NAM8 is a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. NAM8 also contains three RRMs. . Length = 81 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 100.0 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.98 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.9 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.89 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.89 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.89 | |
| PTZ00420 | 568 | coronin; Provisional | 99.89 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.87 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.87 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.86 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.85 | |
| PTZ00421 | 493 | coronin; Provisional | 99.85 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.85 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.85 | |
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.85 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.81 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.8 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.79 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.79 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.78 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.78 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.76 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.76 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.75 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.75 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.75 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.74 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.73 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.72 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.69 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.69 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.69 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.68 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.68 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.67 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.67 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.66 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.66 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.65 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.65 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.63 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.62 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.61 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.6 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.6 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.58 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.56 | |
| PLN03134 | 144 | glycine-rich RNA-binding protein 4; Provisional | 99.55 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.53 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.52 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.48 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.48 | |
| KOG0121 | 153 | consensus Nuclear cap-binding protein complex, sub | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.46 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 99.46 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.46 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.45 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.45 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.45 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.45 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.44 | |
| KOG0122 | 270 | consensus Translation initiation factor 3, subunit | 99.44 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.43 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 99.43 | |
| KOG0126 | 219 | consensus Predicted RNA-binding protein (RRM super | 99.42 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.42 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.41 | |
| KOG0111 | 298 | consensus Cyclophilin-type peptidyl-prolyl cis-tra | 99.41 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.41 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.4 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.39 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.38 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.38 | |
| KOG0149 | 247 | consensus Predicted RNA-binding protein SEB4 (RRM | 99.38 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| PF00076 | 70 | RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.37 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.36 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.36 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.36 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.35 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.34 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.33 | |
| KOG4207 | 256 | consensus Predicted splicing factor, SR protein su | 99.33 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.3 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.3 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.29 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.28 | |
| KOG0113 | 335 | consensus U1 small nuclear ribonucleoprotein (RRM | 99.28 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.28 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| PF14259 | 70 | RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or | 99.26 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.26 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 99.26 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.25 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.24 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.23 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.23 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 99.23 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.22 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.22 | |
| KOG0125 | 376 | consensus Ataxin 2-binding protein (RRM superfamil | 99.21 | |
| PLN03120 | 260 | nucleic acid binding protein; Provisional | 99.21 | |
| KOG0114 | 124 | consensus Predicted RNA-binding protein (RRM super | 99.2 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.2 | |
| PLN03213 | 759 | repressor of silencing 3; Provisional | 99.18 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 99.18 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.17 | |
| smart00361 | 70 | RRM_1 RNA recognition motif. | 99.17 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 99.16 | |
| KOG0130 | 170 | consensus RNA-binding protein RBM8/Tsunagi (RRM su | 99.14 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.13 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.13 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.12 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.12 | |
| PLN03121 | 243 | nucleic acid binding protein; Provisional | 99.1 | |
| KOG4208 | 214 | consensus Nucleolar RNA-binding protein NIFK [Gene | 99.08 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 99.07 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 99.06 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.06 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 99.06 | |
| KOG0108 | 435 | consensus mRNA cleavage and polyadenylation factor | 99.05 | |
| smart00360 | 71 | RRM RNA recognition motif. | 99.04 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.03 | |
| smart00362 | 72 | RRM_2 RNA recognition motif. | 99.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.01 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 99.01 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.0 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 99.0 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.98 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 98.97 | |
| PF13893 | 56 | RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or | 98.96 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.95 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 98.94 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 98.93 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 98.93 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.92 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.91 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.89 | |
| cd00590 | 74 | RRM RRM (RNA recognition motif), also known as RBD | 98.89 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 98.86 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.86 | |
| COG0724 | 306 | RNA-binding proteins (RRM domain) [General functio | 98.85 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.85 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 98.85 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.84 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.84 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.83 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.82 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.81 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.76 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 98.73 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.67 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.67 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.66 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 98.65 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 98.65 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.63 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.62 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.61 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.61 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.6 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 98.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.57 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.56 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.56 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 98.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.53 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.51 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.5 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.48 | |
| KOG0415 | 479 | consensus Predicted peptidyl prolyl cis-trans isom | 98.47 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.45 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.45 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.44 | |
| PF04059 | 97 | RRM_2: RNA recognition motif 2; InterPro: IPR00720 | 98.42 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.42 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.41 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.38 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.36 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 98.36 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.35 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.34 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.32 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.32 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 98.32 | |
| KOG0533 | 243 | consensus RRM motif-containing protein [RNA proces | 98.31 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.31 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.29 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 98.28 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.27 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.26 | |
| KOG0226 | 290 | consensus RNA-binding proteins [General function p | 98.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.25 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.23 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.23 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.22 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.16 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.14 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.13 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.13 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.05 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.05 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.04 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.99 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.96 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.95 | |
| PF11608 | 90 | Limkain-b1: Limkain b1; InterPro: IPR024582 This e | 97.94 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.88 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.87 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.86 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.85 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 97.84 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.84 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.82 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 97.8 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 97.8 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.79 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.78 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.77 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.76 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.72 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.68 | |
| KOG4209 | 231 | consensus Splicing factor RNPS1, SR protein superf | 97.67 | |
| KOG4454 | 267 | consensus RNA binding protein (RRM superfamily) [G | 97.62 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.6 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.57 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.55 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 97.55 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.55 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.54 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.53 | |
| PRK10115 | 686 | protease 2; Provisional | 97.51 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 97.51 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.5 | |
| KOG0153 | 377 | consensus Predicted RNA-binding protein (RRM super | 97.5 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 97.49 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.49 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.47 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.46 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.46 | |
| KOG4660 | 549 | consensus Protein Mei2, essential for commitment t | 97.45 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.42 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.37 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.36 | |
| PRK10115 | 686 | protease 2; Provisional | 97.34 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 97.34 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.33 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 97.32 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.31 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.3 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 97.24 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.22 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.18 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.12 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.09 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.05 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.05 | |
| PF14605 | 53 | Nup35_RRM_2: Nup53/35/40-type RNA recognition moti | 96.93 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.91 | |
| KOG3152 | 278 | consensus TBP-binding protein, activator of basal | 96.85 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 96.81 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 96.79 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.79 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.79 | |
| KOG1995 | 351 | consensus Conserved Zn-finger protein [General fun | 96.76 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.74 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.72 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.63 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.63 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.6 | |
| PF08777 | 105 | RRM_3: RNA binding motif; InterPro: IPR014886 This | 96.48 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.39 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.34 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.34 | |
| KOG0151 | 877 | consensus Predicted splicing regulator, contains R | 96.32 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.27 | |
| KOG1855 | 484 | consensus Predicted RNA-binding protein [General f | 96.26 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.2 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.17 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.1 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.04 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.93 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 95.87 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 95.85 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.83 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 95.83 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.78 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 95.78 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 95.67 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.46 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.41 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 95.4 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.34 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.19 | |
| KOG4210 | 285 | consensus Nuclear localization sequence binding pr | 95.14 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 94.93 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 94.89 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 94.85 | |
| PF05172 | 100 | Nup35_RRM: Nup53/35/40-type RNA recognition motif; | 94.85 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.82 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.74 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.57 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 94.53 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.42 | |
| KOG1996 | 378 | consensus mRNA splicing factor [RNA processing and | 94.32 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 94.13 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.11 |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-103 Score=768.25 Aligned_cols=665 Identities=46% Similarity=0.846 Sum_probs=601.7
Q ss_pred CcccccCCCCCCCCCCCCCccccc---ccCcccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEec
Q 005140 25 DLDSIQLPPGEDLGIISDDEDVYE---DDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPV 101 (712)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 101 (712)
++++..+....++.+..+++++.. +..|..+.|++++|||+|+|+|+++|.++|+.+|.++|+++|+|+. +++|.
T Consensus 21 ~~~e~~f~Dp~~fvd~v~de~l~~Dll~k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn--~~~P~ 98 (698)
T KOG2314|consen 21 QMTEETFEDPKGFVDDVDDEDLVGDLLEKRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN--MYYPI 98 (698)
T ss_pred hcccccccCCcccccccchhhhhhHHHhhCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc--eeecc
Confidence 333333323334444444444432 6677777799999999999999999999999999999999999999 99999
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCC
Q 005140 102 DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKA 181 (712)
Q Consensus 102 d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 181 (712)
|+++| ++||.|++|++..+|+.|++.+||+.|+++|+|.|+.++++++|.+++++|.+|..++|++.++|++||+|+++
T Consensus 99 ~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~d~eky~s~~dew~~pe~q~fk~~~~L~~WL~d~~~ 177 (698)
T KOG2314|consen 99 DEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFKDFEKYESISDEWREPEKQTFKDSSDLRSWLMDDKC 177 (698)
T ss_pred CccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEeehhhhHHHhcCCccccCCcccccccchHHHHHHHhCccc
Confidence 99555 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEECCee--EEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEE
Q 005140 182 RDQFVIRSGTDT--EVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLI 259 (712)
Q Consensus 182 ~~~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i 259 (712)
||||++..+..+ .++||. ....+...-.+..|+.+.+.|||-|+||+|.+..||.+|++. ++.++.+|.|++|..+
T Consensus 178 RDQf~v~~d~~~~~svfwN~-~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~-~f~r~~RF~Hp~Vq~i 255 (698)
T KOG2314|consen 178 RDQFVVQDDVKTTVSVFWNS-KFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGE-SFDRIQRFYHPGVQFI 255 (698)
T ss_pred cceEEEEecCcceeEEEccc-cCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCc-cHHHHHhccCCCceee
Confidence 999999998777 789998 444666677889999999999999999999999999999999 9999999999999999
Q ss_pred EecCCCCEEEEEcCCCCCCC-cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNP-RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~-~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
.|||+.+||+|.+..+...+ .+.....++|||+.+|...+.|....... ..||.++||. |++|+|...
T Consensus 256 dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~----------~~WP~frWS~-DdKy~Arm~ 324 (698)
T KOG2314|consen 256 DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY----------LKWPIFRWSH-DDKYFARMT 324 (698)
T ss_pred ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc----------cccceEEecc-CCceeEEec
Confidence 99999999999998755433 23333689999999999999998754332 3499999999 999999999
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
.++|.||+.+++.++..+.++.++|..++|||.++.||+|+|+. .+.++++.++++|+++.++..+++++.+|+++|.
T Consensus 325 ~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~--~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ 402 (698)
T KOG2314|consen 325 GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET--NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ 402 (698)
T ss_pred cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc--cCCcceEEEEecCccceeeeccceeeeccEEEec
Confidence 99999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred cCCCEEEEEEccccccc-ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 419 SSGDYLAVKVDRYTKTK-KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
.+|.+||+.+++.++++ +..++++.||+++++.+|+..+.+ ...|..++|.|.|+.|++.++...+.++++|.+++
T Consensus 403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 99999999999999886 889999999999999999999999 89999999999999999999987777999999975
Q ss_pred ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeeeccccceeeEEECCCCCEEEEEEc
Q 005140 498 AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMATAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
.. .+..++..+....++.+.|||.|+++++++..+..|.+.++|.+ ..+.+....|...+.+.|+|.|+|++++++
T Consensus 480 ~~--~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 480 NI--KKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred CC--CchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 22 34567778877789999999999999999887678999999998 566777788899999999999999999998
Q ss_pred c-ceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHHH
Q 005140 576 S-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRR 654 (712)
Q Consensus 576 ~-~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (712)
. +|..|++++||++.|+++.....+++.++.|+|+++.++|....++||++||+|+++|+++|+.++..++++..++|+
T Consensus 558 ~wrhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElvekrR 637 (698)
T KOG2314|consen 558 SWRHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVEKRR 637 (698)
T ss_pred hhhhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHH
Confidence 8 888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-eEEEeEEEEeEEeeEEEeeC
Q 005140 655 SLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDEEEE-YEAKEVEVEEVLDVTEEVEE 712 (712)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ee~~~~~~e~~~ 712 (712)
+||++|.+||.+..+++.+++.++..++++.+.|+.++ .+..+|+++|.++++||+.+
T Consensus 638 qlm~~f~~yR~~~~~~~~eek~~r~~lr~~vdtd~~~~~~e~veEei~e~le~tee~~~ 696 (698)
T KOG2314|consen 638 QLMEQFTEYREKIIEEMAEEKSERIKLRGGVDTDALDDEFETVEEEIEEFLEVTEEKVP 696 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcceeeecCCCCchhhhcchhhHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999877666 56677777777877777653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=371.97 Aligned_cols=501 Identities=30% Similarity=0.553 Sum_probs=406.9
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEec
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFS 262 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~S 262 (712)
+||++.++..+.++|+. ........+....|++.+++|||.|+||++.+..+|.+|+.. .+..+.++.|+.|..+.||
T Consensus 3 sQF~~~~s~~i~~f~~~-~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~-~~~~l~~~~~~~V~~~~fS 80 (561)
T COG5354 3 SQFPLDYSAVISVFWNS-QSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGP-SKAKLVRFRHPDVKYLDFS 80 (561)
T ss_pred ceeeeeccceEEEeecC-ccccccccccccCcchhheeecCcchheehhhccceEEcccc-chhheeeeecCCceecccC
Confidence 79999999999999998 445555566778899999999999999999999999999999 7779999999999999999
Q ss_pred CCCCEEEEEcCCCCCCCc-----CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 263 PGEKYLVTYSSHEPSNPR-----DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~-----~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
|.|+||++.+..+...|. ......+.+||+.+|..+..|.+..... +-||.++||. +++|+|..
T Consensus 81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~----------~~Wp~~k~s~-~D~y~ARv 149 (561)
T COG5354 81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY----------LGWPVLKFSI-DDKYVARV 149 (561)
T ss_pred cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc----------cccceeeeee-cchhhhhh
Confidence 999999999987653321 1122369999999999999998876653 2399999999 99999999
Q ss_pred cCCeEEEEEc-CCceecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 338 GKNMISVYET-ESFTLIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 338 ~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
....+.|+++ .+........+...++..++|||. +..||+|+|+. .+.++.+.++.++....+.+++++.++.|+
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk--~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK--LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc--CCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 9999999995 333444445566778999999997 44589999999 899999999999999999999999999999
Q ss_pred EEECcCCCEEEEEEccccccccccc--ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTY--TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
+.|++.|++|++......++++++| +++.|+++.+..+++.. .+ .++|++++|+|.++.|+++++-.+. .+.+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~---~~pVhdf~W~p~S~~F~vi~g~~pa-~~s~ 302 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL---KDPVHDFTWEPLSSRFAVISGYMPA-SVSV 302 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cc---cccceeeeecccCCceeEEeccccc-ceee
Confidence 9999999999999999999999999 67888888877777643 44 8999999999999999999975443 7889
Q ss_pred EEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-eccccceeeEEECCCCCEEE
Q 005140 493 YSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRYVA 571 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~l~ 571 (712)
++++.. ....++...-+.+.|||.++++++++.++..|.+.+||..+.-.+. .......+.+.|||||+|+.
T Consensus 303 ~~lr~N-------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 303 FDLRGN-------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYD 375 (561)
T ss_pred cccccc-------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEE
Confidence 998542 5666777778999999999999999998889999999998665555 56667778889999999999
Q ss_pred EEEcc-ceeccccEEEEEecCceeeee----------------------------------------cccceeeeEEecC
Q 005140 572 TAVTS-VHEMENGFNIWSFNGKLLYRT----------------------------------------LKDHFFQFLWRPR 610 (712)
Q Consensus 572 t~s~~-~~~~d~~v~iw~~~g~~~~~~----------------------------------------~~~~i~~~~w~p~ 610 (712)
+...+ +.+.|+.+.||++.|..+... ..+....++|+|.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~ 455 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPE 455 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhhhhhhccccCCcccceeeccCCCCccccccccccccccccChhhhcccceeEEecC
Confidence 99887 678899999999988644300 0134556899999
Q ss_pred CCCCCChhhHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 005140 611 PPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDEE 690 (712)
Q Consensus 611 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (712)
...+++....+++++.++.+...+++.+.+......+...-+++++.++|.+++.+. +.+...+..|.-....+.....
T Consensus 456 ~p~~lt~~~~~K~~~~~~~~~~~~~k~~~~~~dsa~r~s~p~~ke~~~q~~e~s~e~-ki~sl~~~lRaIe~lker~~~~ 534 (561)
T COG5354 456 PPSKLTIESAKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRKKELVEQWPEYSDED-KIRSLLKKLRAIEALKERMRSG 534 (561)
T ss_pred CCccCChhhhhhcccchhhhccccccccccccccccccccchhhcccccccccCHHH-HHHHHHHHhhhhhcchhhcccc
Confidence 999999999999999999999999999988888888888889999999999888776 3333333333322222222233
Q ss_pred cceEEEe----EEEEeEEeeEEEee
Q 005140 691 EEYEAKE----VEVEEVLDVTEEVE 711 (712)
Q Consensus 691 ~~~~~~~----~~~ee~~~~~~e~~ 711 (712)
++.+..+ +.+||+++|.+|+.
T Consensus 535 eele~~qv~kietee~VlsElk~lv 559 (561)
T COG5354 535 EELEVIQVNKIETEEEVLSELKELV 559 (561)
T ss_pred cchhhhhhhhhhhHHHHHHHhhhcc
Confidence 3334444 55666666655543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=320.66 Aligned_cols=330 Identities=18% Similarity=0.298 Sum_probs=263.6
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
..+...+.+|..+|.|++|||+|++||+|+.|. +++||.. +..+..+. .|.. |.|++|||||+.||+|+.+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d----- 178 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD----- 178 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecCCccEEEEEEECCCcchhhccccC-----
Confidence 344556789999999999999999999999999 8899999 77777666 3555 9999999999999999999
Q ss_pred cCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 280 RDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
|+|++||..+|+. .+.+.+|...++ ++.|.-+-..| ...+||+++ ||.++|||+..+..+....
T Consensus 179 -----g~I~lwdpktg~~~g~~l~gH~K~It--------~Lawep~hl~p-~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 179 -----GSIRLWDPKTGQQIGRALRGHKKWIT--------ALAWEPLHLVP-PCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred -----CeEEEecCCCCCcccccccCccccee--------EEeecccccCC-CccceecccCCCCEEEEEccCceEEEEec
Confidence 9999999998875 578889987763 33333233345 678999999 9999999999988888888
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee--cceeE---------EECcCCC----
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV--SDCKM---------YWQSSGD---- 422 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~---------~~s~~g~---- 422 (712)
.|...|+|+.|--+| +|++ ++.|.++++|.-. .+..++....+.. +...+ +|.|.|.
T Consensus 245 gHT~~VTCvrwGG~g-liyS-----gS~DrtIkvw~a~--dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG-LIYS-----GSQDRTIKVWRAL--DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred cCccceEEEEEcCCc-eEEe-----cCCCceEEEEEcc--chhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 999999999997654 5555 7788887776543 2222221111111 11000 2334443
Q ss_pred ---------------------EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE
Q 005140 423 ---------------------YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 423 ---------------------~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
.|++++++.+ +.+|+-.....|+ ..+.+|..-|+.+.||||++++|++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~t---------lflW~p~~~kkpi--~rmtgHq~lVn~V~fSPd~r~IASa 385 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFT---------LFLWNPFKSKKPI--TRMTGHQALVNHVSFSPDGRYIASA 385 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCce---------EEEecccccccch--hhhhchhhheeeEEECCCccEEEEe
Confidence 4888888877 6777765544443 3567999999999999999999999
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccc
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM 557 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~ 557 (712)
+-|. .|++|+.++++ .+.++.+| .|..++||.|.++|++++. |.+|++|++++.++... +|...
T Consensus 386 SFDk---SVkLW~g~tGk------~lasfRGHv~~VYqvawsaDsRLlVS~Sk---DsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 386 SFDK---SVKLWDGRTGK------FLASFRGHVAAVYQVAWSADSRLLVSGSK---DSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred eccc---ceeeeeCCCcc------hhhhhhhccceeEEEEeccCccEEEEcCC---CceEEEEEeeeeeecccCCCCCce
Confidence 9999 99999999887 57777777 7899999999999999999 99999999998877664 67799
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
|.++.|+|||..+++++. |..+++|.
T Consensus 454 Vf~vDwspDG~rV~sggk-----dkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGK-----DKVLRLWR 479 (480)
T ss_pred EEEEEecCCCceeecCCC-----ceEEEeec
Confidence 999999999999999999 99999995
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=307.25 Aligned_cols=402 Identities=25% Similarity=0.455 Sum_probs=328.7
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCC--CcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEE
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRS--YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLID 260 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~ 260 (712)
.+|+++++.+.. +|+.+........+... ..+++..++|++|+++|.+..+.+.|++.. ....+.+.....+.++.
T Consensus 3 ~~~aVRsSe~~~-l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~-~~~~~lt~~~~~~~~L~ 80 (566)
T KOG2315|consen 3 LVYAVRSSEGFY-LFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQVVKVFEIA-TLKVVLCVELKKTYDLL 80 (566)
T ss_pred ceEEEEccceeE-EeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCCeEEEEEcc-CCcEEEEeccceeeeee
Confidence 468888877655 88885544444455442 445788999999999999999999999988 55444444434899999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCC
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN 340 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~ 340 (712)
|||.|.||.|.-.-....+.......+.+|++.++.....+...... + | +++||. |+.+.|....+
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~----------~--W-~~qfs~-dEsl~arlv~n 146 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN----------G--W-VPQFSI-DESLAARLVSN 146 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc----------C--c-cccccc-chhhhhhhhcc
Confidence 99999999988766555555555567999999996554444433322 1 8 599999 99999998999
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCC---ccceeeeeeeeecceeE
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPS---KEELRQKNLFSVSDCKM 415 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~ 415 (712)
.+.+|++.+.+.+.. .++..++..+.+||. -.++|+++|+. ++.+..+.+|..+. ...+..++++..+.+.+
T Consensus 147 ev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~--kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 147 EVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEK--KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred eEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCC--CCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 999999998665543 377889999999997 47899999988 77777777777763 34677889999999999
Q ss_pred EECcCCCEE-EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 416 YWQSSGDYL-AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 416 ~~s~~g~~l-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
.|++-|.-| +..+.+-.+++.+||++..||.+...+. ...+.+ ...++|+++.|+|+|+.|+++.+-.+. .+.|||
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPA-kvtifn 300 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPA-KVTIFN 300 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEEec-CCCCCceEEEECCCCCEEEEEEecccc-eEEEEc
Confidence 999999854 4566677788999999999998887632 334455 458999999999999999999987765 899999
Q ss_pred eecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEE
Q 005140 495 MRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s 574 (712)
++ +.++..+..++.+++.|+|.|++|++++.|+..|.+.|||..+.+++.+......+-+.|+|||+||+|++
T Consensus 301 lr-------~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 301 LR-------GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CC-------CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEe
Confidence 84 34899999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred cc-ceeccccEEEEEecCceeeeeccc-ceeeeEEecCCCC
Q 005140 575 TS-VHEMENGFNIWSFNGKLLYRTLKD-HFFQFLWRPRPPS 613 (712)
Q Consensus 575 ~~-~~~~d~~v~iw~~~g~~~~~~~~~-~i~~~~w~p~~~~ 613 (712)
.+ +++.||+++||++.|.+++..+.. .++++.|+|...-
T Consensus 374 TaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~~~~ 414 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPFNDK 414 (566)
T ss_pred ccccEEecCCeEEEEecCceeehhhhhHhHhheeeeecCCc
Confidence 98 899999999999999999988877 5999999986543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=304.31 Aligned_cols=312 Identities=17% Similarity=0.294 Sum_probs=262.3
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|.+ |.|++|||+|++||+|+.| .++++||+.+..++.+.++|..-+. +++||| ||
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD----------~TvR~WD~~TeTp~~t~KgH~~WVl-------------cvawsP-Dg 169 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGD----------TTVRLWDLDTETPLFTCKGHKNWVL-------------CVAWSP-DG 169 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCC----------ceEEeeccCCCCcceeecCCccEEE-------------EEEECC-Cc
Confidence 444 9999999999999999999 9999999999999999999998764 899999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecc-cccccccCeeeEEECCC-----CCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 332 KYFAKLG-KNMISVYETESFTLID-KKSLKVENVMDFSWSPT-----DPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~-----~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
+.||+++ ||+|++||..+++.+. .+..|...|++++|.|- .+.||+ ++.|+.++|| ++..+..+..
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las-----~skDg~vrIW--d~~~~~~~~~ 242 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS-----SSKDGSVRIW--DTKLGTCVRT 242 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceec-----ccCCCCEEEE--EccCceEEEE
Confidence 9999999 9999999999887654 35678888999999764 678888 7788887765 4555556666
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe-----------e
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-----------P 473 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-----------p 473 (712)
...+.....++.|.-+| +|++++.|.+ +++|+.... . ...++.+|...|+.++.| |
T Consensus 243 lsgHT~~VTCvrwGG~g-liySgS~Drt---------Ikvw~a~dG-~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEG-LIYSGSQDRT---------IKVWRALDG-K--LCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred eccCccceEEEEEcCCc-eEEecCCCce---------EEEEEccch-h--HHHhhcccchheeeeeccchhhhhcccccc
Confidence 66677777888887665 7888888887 899987652 2 224577899999998877 3
Q ss_pred CCC-------------------------EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCe
Q 005140 474 KGH-------------------------RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRF 526 (712)
Q Consensus 474 ~g~-------------------------~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~ 526 (712)
.++ ++++++.|. ++.+|+...... ++..+.+| -|+.+.||||+++
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~---tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF---TLFLWNPFKSKK-----PITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc---eEEEeccccccc-----chhhhhchhhheeeEEECCCccE
Confidence 343 499999998 999999754332 56666666 4899999999999
Q ss_pred EEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee---cccc
Q 005140 527 IVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDH 601 (712)
Q Consensus 527 l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---~~~~ 601 (712)
+++++. |..|++|+-.+|+.+.+ +|...|..++||.|.+.|++++. |.++++|++..+.+... |.+.
T Consensus 382 IASaSF---DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~Sk-----DsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 382 IASASF---DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSK-----DSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred EEEeec---ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCC-----CceEEEEEeeeeeecccCCCCCce
Confidence 999999 99999999999999987 67899999999999999999999 99999999997766644 6689
Q ss_pred eeeeEEecCCCCCCChhhHHHHH
Q 005140 602 FFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 602 i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
|+.+.|+|+|..+++++.|+.++
T Consensus 454 Vf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEEecCCCceeecCCCceEEE
Confidence 99999999999999999887654
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=289.08 Aligned_cols=275 Identities=17% Similarity=0.309 Sum_probs=243.0
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCcCCCcc
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~ 285 (712)
+...+++.+.||+|++.||||+-+| ++||+.. +...+.++ .|. .|.++.|+|. +..|||++.| |
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D----------g 241 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD----------G 241 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecC-CcceeEEEeccccceeeEEEccCCCccceeeeccC----------C
Confidence 4557889999999999999999999 7799999 77777766 354 5999999997 6799999999 9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCee
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
++++|++.+..++..+.+|...+. .++|.| +|+||++++ |.+-++||+.++..+-....|..+|.
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs-------------~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~ 307 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVS-------------RVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF 307 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhhe-------------eeeecC-CCceeeecccccchhhcccccchhhHhhcccccccc
Confidence 999999988899999999988764 699999 999999999 99999999999987777778999999
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
+++|.|||..+++ ||-|..++||.... |+.
T Consensus 308 ~iaf~~DGSL~~t-----GGlD~~~RvWDlRt------------------------gr~--------------------- 337 (459)
T KOG0272|consen 308 SIAFQPDGSLAAT-----GGLDSLGRVWDLRT------------------------GRC--------------------- 337 (459)
T ss_pred eeEecCCCceeec-----cCccchhheeeccc------------------------CcE---------------------
Confidence 9999999999999 88888888775432 111
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEcc
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP 522 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~sp 522 (712)
.+.+.+|...|.+++|+|+|..+|+++.|+ +++|||++... .+.+++.| -|+.+.|+|
T Consensus 338 -----------im~L~gH~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~------~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 338 -----------IMFLAGHIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRS------ELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred -----------EEEecccccceeeEeECCCceEEeecCCCC---cEEEeeecccc------cceecccccchhhheEecc
Confidence 134568999999999999999999999999 99999997654 57778777 489999999
Q ss_pred -CCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 523 -SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 523 -dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
.|.+|+++++ |++++||...++.++.+ +|.+.|.++.++|||.+|++++. |+++++|.
T Consensus 398 ~~g~fL~Tasy---D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~-----DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASY---DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF-----DRTIKLWR 458 (459)
T ss_pred cCCeEEEEccc---CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc-----Cceeeecc
Confidence 7899999999 99999999999999886 78899999999999999999999 99999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=281.58 Aligned_cols=392 Identities=15% Similarity=0.245 Sum_probs=294.0
Q ss_pred CCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee--ec--CCCeeEEEecCC
Q 005140 190 GTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR--YA--HPQVKLIDFSPG 264 (712)
Q Consensus 190 ~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~--~~--~~~v~~i~~Spd 264 (712)
....+++-++ ........|+.|...++-..|||.|-|+|+|...| |+|||.. ....+.+ ++ ...|..|+|++|
T Consensus 37 nGksv~ir~i-~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt-~~~hiLKnef~v~aG~I~Di~Wd~d 114 (603)
T KOG0318|consen 37 NGKSVIIRNI-DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTT-QKEHILKNEFQVLAGPIKDISWDFD 114 (603)
T ss_pred CCCEEEEEEC-CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEecc-CcceeeeeeeeecccccccceeCCC
Confidence 3344445565 34445668899999999999999999999999999 9999998 4333333 32 234999999999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMI 342 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i 342 (712)
+++|+..+.. .++.|.+.+|| +|..+-.+.+|...+. ++.|-| ..- .+++++ |++|
T Consensus 115 s~RI~avGEG------rerfg~~F~~D--SG~SvGei~GhSr~in-------------s~~~Kp-sRPfRi~T~sdDn~v 172 (603)
T KOG0318|consen 115 SKRIAAVGEG------RERFGHVFLWD--SGNSVGEITGHSRRIN-------------SVDFKP-SRPFRIATGSDDNTV 172 (603)
T ss_pred CcEEEEEecC------ccceeEEEEec--CCCccceeeccceeEe-------------eeeccC-CCceEEEeccCCCeE
Confidence 9999887765 22348889998 7888999999988764 677877 544 688888 9999
Q ss_pred EEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee---eeeecceeEEECc
Q 005140 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN---LFSVSDCKMYWQS 419 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~s~ 419 (712)
.+|+-+-++.-.....|..-|+++.|+|||.++++ .+.| .++++|+..+.+.+.... .+...+..+.|+|
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat-----~gsD--gki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT-----AGSD--GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCCCCeEEE-----ecCC--ccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 99999888776666677778999999999999999 4444 467788888877554443 6788889999999
Q ss_pred CCCEEEEEEccccccccccccc--E---------------EEEE------EecC--------CcceeEEEecCCCCceEE
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTG--F---------------ELFR------IKER--------DIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~--~---------------~l~~------l~~~--------~~~~~~~~l~~h~~~v~~ 468 (712)
|++.+++.+.+.+.+.|..... + .+|. +... ..+.....+.+|+..|++
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 9999999999987333322111 0 0110 0000 001112334589999999
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC--------cee--------------------E--------------
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG--------RVS--------------------K-------------- 506 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~--------~~~--------------------~-------------- 506 (712)
++.+|++++|++++.|| .|.-|+..++.... .+. .
T Consensus 326 Ltv~~d~~~i~SgsyDG---~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDG---HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred EEEcCCCCEEEeeccCc---eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee
Confidence 99999999999999999 88888876541100 000 0
Q ss_pred -------------------------EEEeC----------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee-
Q 005140 507 -------------------------LTTLK----------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM- 550 (712)
Q Consensus 507 -------------------------~~~~~----------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~- 550 (712)
+..+. +-...+++++|++..+++|+. ||.|+||.+....+.
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~---Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ---DGKVHVYSLSGDELKE 479 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc---cceEEEEEecCCcccc
Confidence 00000 001346889999999999998 999999999975543
Q ss_pred ---eeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee----ecccceeeeEEecCCCCCCChhhHHHH
Q 005140 551 ---ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR----TLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 551 ---~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~----~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
...|.+.++++++||||.|||++.. .+.+.+|+...+.... .|..+|.+++|+|+...++|++-|..|
T Consensus 480 e~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred eeeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 3367799999999999999999999 7999999998765542 388999999999999999999988765
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=278.50 Aligned_cols=394 Identities=16% Similarity=0.232 Sum_probs=281.3
Q ss_pred CCceEEEE-ECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec----CC
Q 005140 181 ARDQFVIR-SGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA----HP 254 (712)
Q Consensus 181 ~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~----~~ 254 (712)
.|...+++ +.|.++.++.. ...+....+..|..-|+|+.|||||.++||++.|| +.|||.. ++..+..+. |.
T Consensus 158 sRPfRi~T~sdDn~v~ffeG-PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEG-PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHK 235 (603)
T ss_pred CCceEEEeccCCCeEEEeeC-CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEecCCCCcc
Confidence 33334444 45566668777 57777788889999999999999999999999999 8899999 888888774 55
Q ss_pred C-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 Q-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
+ |..++||||++.++|++.| .+++|||+.++++++++......- ..+- .+-|.. ..
T Consensus 236 GsIfalsWsPDs~~~~T~SaD----------kt~KIWdVs~~slv~t~~~~~~v~-----dqqv-----G~lWqk---d~ 292 (603)
T KOG0318|consen 236 GSIFALSWSPDSTQFLTVSAD----------KTIKIWDVSTNSLVSTWPMGSTVE-----DQQV-----GCLWQK---DH 292 (603)
T ss_pred ccEEEEEECCCCceEEEecCC----------ceEEEEEeeccceEEEeecCCchh-----ceEE-----EEEEeC---Ce
Confidence 4 9999999999999999999 999999999999999987765411 0111 245533 46
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-eeeeec
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLFSVS 411 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 411 (712)
|++.+ +|.|.+++...+..+.....|...|+++..+|++++|.+ ++.|+ .|..|+..+...-+.. ..+...
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S-----gsyDG--~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS-----GSYDG--HINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe-----eccCc--eEEEEecCCccccccccccccce
Confidence 66666 999999999999888888899999999999999999998 55555 4556665544322111 112222
Q ss_pred ceeEEECcCCCEEEEEEccccccc---ccccccEE---------------------------EEEEecCCcceeEEEecC
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTK---KSTYTGFE---------------------------LFRIKERDIPIEVLELDN 461 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~---~~~~~~~~---------------------------l~~l~~~~~~~~~~~l~~ 461 (712)
+..+.-+..+.++.++.++..+.. ...++.-. +..++.... ...+.+
T Consensus 366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-~~~~~~-- 442 (603)
T KOG0318|consen 366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-VSSIPI-- 442 (603)
T ss_pred EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-ceeecc--
Confidence 333333333333333333221100 00000000 001110000 001111
Q ss_pred CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-EeCCCceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 462 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLKGKQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 462 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
.....+++++|+++.+|+++.|+ .|+||.+...... .... .-+..+++++++||||.||+++.. .+.+.
T Consensus 443 -~y~~s~vAv~~~~~~vaVGG~Dg---kvhvysl~g~~l~---ee~~~~~h~a~iT~vaySpd~~yla~~Da---~rkvv 512 (603)
T KOG0318|consen 443 -GYESSAVAVSPDGSEVAVGGQDG---KVHVYSLSGDELK---EEAKLLEHRAAITDVAYSPDGAYLAAGDA---SRKVV 512 (603)
T ss_pred -ccccceEEEcCCCCEEEEecccc---eEEEEEecCCccc---ceeeeecccCCceEEEECCCCcEEEEecc---CCcEE
Confidence 34567899999999999999999 9999999754421 1212 222457999999999999999988 99999
Q ss_pred EEECCcceeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--e--eeeecccceeeeEEecCCCC
Q 005140 541 FYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--L--LYRTLKDHFFQFLWRPRPPS 613 (712)
Q Consensus 541 iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~--~~~~~~~~i~~~~w~p~~~~ 613 (712)
+||..+.+.... .|...|.+++|||+...+|+|+. |..|.||++... . +...|...++.+.|--+ ..
T Consensus 513 ~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl-----Dt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~t 586 (603)
T KOG0318|consen 513 LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL-----DTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-ST 586 (603)
T ss_pred EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc-----cceEEEEEccChhhheEeccccccCceeEEEecC-ce
Confidence 999998777432 68899999999999999999999 999999998743 2 22337777999999855 56
Q ss_pred CCChhhHHHHHH
Q 005140 614 FLTPEKEEEIAK 625 (712)
Q Consensus 614 l~s~~~d~~i~~ 625 (712)
++|.++|..||.
T Consensus 587 vvSsG~Da~iK~ 598 (603)
T KOG0318|consen 587 VVSSGQDANIKV 598 (603)
T ss_pred EEeccCcceeEE
Confidence 888888888763
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=283.20 Aligned_cols=396 Identities=14% Similarity=0.236 Sum_probs=299.8
Q ss_pred CCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCc
Q 005140 166 YTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTF 245 (712)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~ 245 (712)
+....|+.....+|+|.-. ++.-..+...+-+.. ...+...-.-+..|.|+.|||||+++|.+..+-+.||...+..
T Consensus 52 ~e~~~NI~~ialSp~g~ll-lavdE~g~~~lvs~~--~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~ 128 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGTLL-LAVDERGRALLVSLL--SRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI 128 (893)
T ss_pred eecCCceEEEEeCCCceEE-EEEcCCCcEEEEecc--cceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcch
Confidence 4445667777777887733 233333344444441 2222222223468999999999999999999989999887333
Q ss_pred c-------eeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce--eeeccCCCcccccCCCC
Q 005140 246 N-------RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFKGSADEFAVGGTG 314 (712)
Q Consensus 246 ~-------~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~--~~~~~~~~~~~~~~~~~ 314 (712)
+ +..++ +...|.++.||.|.++|++|+.| .+++||.+...+- ...+.+|...+.
T Consensus 129 ~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD----------~s~rl~~v~~~k~~~~~~l~gHkd~Vv----- 193 (893)
T KOG0291|consen 129 KNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRD----------LSARLFGVDGNKNLFTYALNGHKDYVV----- 193 (893)
T ss_pred hcccCcceEeeeecCCccceeEEEeccCCceEEecccc----------ceEEEEEeccccccceEeccCCCcceE-----
Confidence 3 11222 23459999999999999999999 8999999876655 667888888773
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-----------------------cee-----cc----cccc--c
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-----------------------FTL-----ID----KKSL--K 359 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-----------------------~~~-----~~----~~~~--~ 359 (712)
.+.|.. +..-+.+.+ ||.+.+|.... ++. .. +.-+ .
T Consensus 194 --------acfF~~-~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 194 --------ACFFGA-NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred --------EEEecc-CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 567888 888888888 99999998761 000 00 0000 1
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
...|++.+|++..+.|++ +-..+...+|++|....+....+.......+.|+..|.+|++++.. .
T Consensus 265 ~~kvtaa~fH~~t~~lvv-------gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--------l 329 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVV-------GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--------L 329 (893)
T ss_pred ccceeeeeccCCceEEEE-------EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--------c
Confidence 135889999999999998 5555667799999999888888877778888999999999998775 2
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA 517 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~ 517 (712)
+.+.+|...... ..+...+|...++++++||||+++|+|+.|+ .|+|||..++- .+.++..| .++.
T Consensus 330 gQLlVweWqsEs---YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg---KVKvWn~~Sgf------C~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 330 GQLLVWEWQSES---YVLKQQGHSDRITSLAYSPDGQLIATGAEDG---KVKVWNTQSGF------CFVTFTEHTSGVTA 397 (893)
T ss_pred ceEEEEEeeccc---eeeeccccccceeeEEECCCCcEEEeccCCC---cEEEEeccCce------EEEEeccCCCceEE
Confidence 347888887543 3356679999999999999999999999999 99999997654 56666655 6889
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCc--------------------------------------------ceeee--
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDE--------------------------------------------LETMA-- 551 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~--------------------------------------------~~~~~-- 551 (712)
+.|+..|+.+++++. ||+|+.||+.. |+++.
T Consensus 398 v~f~~~g~~llssSL---DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 398 VQFTARGNVLLSSSL---DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred EEEEecCCEEEEeec---CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 999999999999988 99988888752 33332
Q ss_pred eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--eeeee-cccceeeeEEecCCCCCCChhhHHHH
Q 005140 552 TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LLYRT-LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 552 ~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~~~~~-~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
++|.++|.+++|+|+|..|++++. |.+|++|++-+. .+... ....+..++|+|+|+.|+.+.-|+.|
T Consensus 475 sGHEgPVs~l~f~~~~~~LaS~SW-----DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDGSLLASGSW-----DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred cCCCCcceeeEEccccCeEEeccc-----cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 378899999999999999999999 999999997644 33333 44679999999999999988877765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=257.08 Aligned_cols=279 Identities=19% Similarity=0.274 Sum_probs=236.9
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
+.+++|...|+++.|++|+++|++++.|| ++|||.- +...+..++.+ -|..++|||.|+++|.|+.|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd--------- 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD--------- 118 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCCCCeEEecCcC---------
Confidence 67899999999999999999999999999 8899998 66666666554 49999999999999999999
Q ss_pred ccEEEEEEccCC------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccc
Q 005140 284 RVVINIFDVRTG------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS 357 (712)
Q Consensus 284 ~~~I~iwd~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~ 357 (712)
....||++.+. ...+.+.+|..-.. ++.|.+ |+++|...+|.+..+||+++++.+....
T Consensus 119 -N~Csiy~ls~~d~~g~~~v~r~l~gHtgylS-------------cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 119 -NKCSIYPLSTRDAEGNVRVSRELAGHTGYLS-------------CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred -ceeEEEecccccccccceeeeeecCccceeE-------------EEEEcC-CCceEecCCCceEEEEEcccceEEEEec
Confidence 78899999755 35677889988764 788888 7776666669999999999999998888
Q ss_pred ccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 358 LKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 358 ~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
.|...|.+++++| +++.+++ |+.|...++|..
T Consensus 184 GH~gDV~slsl~p~~~ntFvS-----g~cD~~aklWD~------------------------------------------ 216 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVS-----GGCDKSAKLWDV------------------------------------------ 216 (343)
T ss_pred CCcccEEEEecCCCCCCeEEe-----cccccceeeeec------------------------------------------
Confidence 9999999999999 8888888 777777665543
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----C
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----G 512 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~ 512 (712)
+.. .....+.+|...|+++.|.|+|.-|++++.|+ +.++||++... .+..+. .
T Consensus 217 -----------R~~---~c~qtF~ghesDINsv~ffP~G~afatGSDD~---tcRlyDlRaD~------~~a~ys~~~~~ 273 (343)
T KOG0286|consen 217 -----------RSG---QCVQTFEGHESDINSVRFFPSGDAFATGSDDA---TCRLYDLRADQ------ELAVYSHDSII 273 (343)
T ss_pred -----------cCc---ceeEeecccccccceEEEccCCCeeeecCCCc---eeEEEeecCCc------EEeeeccCccc
Confidence 221 12255779999999999999999999999999 99999998765 333333 2
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
.++++++||-.|++|+.|.. |.++.+||.-.++.+.. +|...|+++..+|||.-|++++. |..++||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~---d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-----Ds~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYD---DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-----DSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeec---CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-----hHheeecC
Confidence 36899999999999999877 99999999887776653 88899999999999999999999 99999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=284.77 Aligned_cols=426 Identities=13% Similarity=0.159 Sum_probs=323.9
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEe
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDF 261 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~ 261 (712)
.++.++.|+++++||......+......|...|++++|++|+.-++++++|. +.|||.. ..+.+..++.. .+.++.+
T Consensus 163 lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~-~~~~l~~lp~ye~~E~vv~ 241 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV-QYKKLKTLPLYESLESVVR 241 (775)
T ss_pred heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh-hhhhhheechhhheeeEEE
Confidence 4466777899999999434445778899999999999999999999999999 5699998 78877777644 4778888
Q ss_pred cCC-----CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcc-cc----------------------cC--
Q 005140 262 SPG-----EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE-FA----------------------VG-- 311 (712)
Q Consensus 262 Spd-----g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~-~~----------------------~~-- 311 (712)
-++ |.+++|++.+ |.+++||..+++++.....+... .. +.
T Consensus 242 l~~~~~~~~~~~~TaG~~----------g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~ 311 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGS----------GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED 311 (775)
T ss_pred echhcCCcceEEEEecCC----------ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence 777 6799999999 89999998777654433222100 00 00
Q ss_pred ---CCCCcCC---CCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 312 ---GTGGVAG---VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 312 ---~~~~~~~---~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
......| ......-|.| ..+++|.++ ...+++|++++.... ....|.+.|.+++...+|-+|++ ++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~-e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat-----~s 384 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGP-EESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLAT-----GS 384 (775)
T ss_pred ccEEehhhcCCchhheeeeecCC-ccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEE-----ec
Confidence 0000000 0011234566 778888888 899999998876654 34578888999996667788998 99
Q ss_pred CCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCC-CEEEEEEcccccccccccccEEEEEEecCCcceeEE----
Q 005140 385 GNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSG-DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL---- 457 (712)
Q Consensus 385 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g-~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---- 457 (712)
.|.++++|.++....+ .+...+.+......+..+..| .+|++++.|.+ +++|.+.........+
T Consensus 385 KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t---------lK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT---------LKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce---------EEEecCCCcccccccceehh
Confidence 9999999999544332 444555566666666666655 47788888877 8999987621111112
Q ss_pred --EecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEecc
Q 005140 458 --ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLK 533 (712)
Q Consensus 458 --~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~ 533 (712)
....|...|++++.+|+.+.||+++.|. +.+||++... ....++.+| .+.++.|+|..+.+++++.
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk---taKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg- 525 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDK---TAKIWDLEQL------RLLGVLSGHTRGVWCVSFSKNDQLLATCSG- 525 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEeccccc---ceeeecccCc------eEEEEeeCCccceEEEEeccccceeEeccC-
Confidence 2347999999999999999999999999 9999999732 377888877 6899999999999999998
Q ss_pred CCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEe
Q 005140 534 GFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWR 608 (712)
Q Consensus 534 ~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~ 608 (712)
|++|+||.++++.++.+ +|...|..+.|-.+|+.|++++. ||-++||++.. .++... |.++||.++-+
T Consensus 526 --D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-----dGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 526 --DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-----DGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred --CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-----CCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 99999999999999987 67789999999999999999999 99999999984 444443 88999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 005140 609 PRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKN 658 (712)
Q Consensus 609 p~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (712)
|...+++|++.|+.|. ++++..++++.++.+++++..++.+++..
T Consensus 599 ~~~~~~~tgg~Dg~i~-----~wkD~Te~~~~ee~~K~~eaieq~QeL~n 643 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRII-----FWKDVTEEEQNEEQEKREEAIEQEQELEN 643 (775)
T ss_pred CccceeEecCCCeEEE-----EeecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 56666666666555555555555555443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=277.63 Aligned_cols=399 Identities=15% Similarity=0.223 Sum_probs=278.7
Q ss_pred CCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-e
Q 005140 180 KARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-V 256 (712)
Q Consensus 180 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v 256 (712)
+....++++|.||.+.+|+. ........+.+|...|+++.|+..|..||+|+.|+ |+|||+- ...-+.++ +|.. |
T Consensus 75 ~d~l~lAVGYaDGsVqif~~-~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV-~E~Gl~rL~GHkd~i 152 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSL-ESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV-GEEGLFRLRGHKDSI 152 (888)
T ss_pred CCcceEEEEecCceEEeecc-CCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec-cceeeEEeecchHHH
Confidence 34456799999999999999 44477788999999999999999999999999999 8899998 44445555 3554 8
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-----------cCCCC-----------
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-----------VGGTG----------- 314 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-----------~~~~~----------- 314 (712)
+..-|..+.++|++.+.| +.|++||+.+..+..+...|...+- .+..+
T Consensus 153 T~~~F~~~~~~lvS~sKD----------s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 153 TQALFLNGDSFLVSVSKD----------SMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred hHHhccCCCeEEEEeccC----------ceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 889999889999999999 8899999866554443333322220 00000
Q ss_pred --------------------------------------------------------------------------------
Q 005140 315 -------------------------------------------------------------------------------- 314 (712)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (712)
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence
Q ss_pred ------------------------------Cc---------CCCCc----------------------------CeEEec
Q 005140 315 ------------------------------GV---------AGVSW----------------------------PVFRWG 327 (712)
Q Consensus 315 ------------------------------~~---------~~~~~----------------------------~~~~~s 327 (712)
++ +.++| ..+++|
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 00 00000 022223
Q ss_pred CCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 328 GGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 328 ~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
. +...+++++.+++.||+..+++.+.+. ....+.+..|.|.++++++ +...+.+-+|++.+...+.....
T Consensus 383 ~-d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l~~~Fvpgd~~Iv~-------G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 383 S-DSILLASGAGESIKIWNRDTLKCIRTI--TCGYILASKFVPGDRYIVL-------GTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred c-CceeeeecCCCcEEEEEccCcceeEEe--ccccEEEEEecCCCceEEE-------eccCCceEEEEeehhhhhhhhhc
Confidence 2 233333333334444444433333211 1112333344444444444 22223333344433333333334
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec----CCcc--------eeEEEecCCCCceEEEEEeeCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE----RDIP--------IEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~--------~~~~~l~~h~~~v~~~~~sp~g 475 (712)
|......+..+||+..+++++.|.+ +.+|+... .+.. ..++++ ...|.|+.+||||
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDkt---------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel---~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKT---------VKFWDFKLVVSVPGTQKKVLSLKHTRTLEL---EDDVLCVSVSPDG 520 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcE---------EEEEeEEEEeccCcccceeeeeccceEEec---cccEEEEEEcCCC
Confidence 5556667778999999999999988 67776542 1111 123445 7889999999999
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT- 552 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~- 552 (712)
++||++--|. +|++|-+++-+ ..-++-+| ||.|+..|||++.+++|+. |.+|++|-++-|.+-.+
T Consensus 521 k~LaVsLLdn---TVkVyflDtlK------FflsLYGHkLPV~smDIS~DSklivTgSA---DKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 521 KLLAVSLLDN---TVKVYFLDTLK------FFLSLYGHKLPVLSMDISPDSKLIVTGSA---DKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred cEEEEEeccC---eEEEEEeccee------eeeeecccccceeEEeccCCcCeEEeccC---CCceEEeccccchhhhhh
Confidence 9999999998 99999997654 45566666 8999999999999999999 99999999998888776
Q ss_pred -ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceee--eecccceeeeEEecCCCCCCChhhHHHHHHHHH
Q 005140 553 -AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLY--RTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLK 628 (712)
Q Consensus 553 -~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~--~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~~ 628 (712)
.|...|.++.|-|....+.+++. |+.|+-||-.. ..+. ..|...+++++.+|+|.+++|++.|.+||.|-+
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gK-----D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGK-----DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred hcccCceeEEEEcccceeEEEecC-----cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 67799999999999999999999 99999998653 2222 337789999999999999999999999986654
Q ss_pred H
Q 005140 629 K 629 (712)
Q Consensus 629 ~ 629 (712)
.
T Consensus 664 t 664 (888)
T KOG0306|consen 664 T 664 (888)
T ss_pred c
Confidence 3
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=266.80 Aligned_cols=318 Identities=15% Similarity=0.320 Sum_probs=262.9
Q ss_pred CCCcccceEEEcCCCc-EEEEEecCc-eEEeeccc-C----cceeeee----------cCCCeeEEEecCCCCEEEEEcC
Q 005140 211 RSYWTESFVQWSPLGT-YLATVHRQG-AAVWGGAN-T----FNRLMRY----------AHPQVKLIDFSPGEKYLVTYSS 273 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~-~----~~~~~~~----------~~~~v~~i~~Spdg~~l~t~s~ 273 (712)
+|...|.+.+|+|--. .||+++.+. .++|++.. . .+...+. ...+|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4999999999999776 889998887 67998761 1 1111111 1235999999999999999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~ 352 (712)
+ |.++||+. +|.++.++..|++++. +++|+. +|.||++++ |+++.+||..++..
T Consensus 256 ~----------G~~riw~~-~G~l~~tl~~HkgPI~-------------slKWnk-~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 256 D----------GEARIWNK-DGNLISTLGQHKGPIF-------------SLKWNK-KGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred C----------cEEEEEec-CchhhhhhhccCCceE-------------EEEEcC-CCCEEEeccCCccEEEEeccCceE
Confidence 9 99999995 8999999999999874 799999 999999999 99999999999988
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.....+|..+..++.|-.+..+.. ++.++ .|.++.+....++.....|......+.|+|.|..|+++++|.+
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~t------s~td~--~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFAT------SSTDG--CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred EEeeeeccCCccceEEecCceEee------cCCCc--eEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 777777777767889987665544 33444 4555666666666666667888888999999999999999988
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC---------CEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG---------HRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g---------~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
++||.+...... ..+.+|...|..+.|+|.| ..+++++.|+ +|++||+..+.
T Consensus 383 ---------lkiWs~~~~~~~---~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds---tV~lwdv~~gv---- 443 (524)
T KOG0273|consen 383 ---------LKIWSMGQSNSV---HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS---TVKLWDVESGV---- 443 (524)
T ss_pred ---------eEeeecCCCcch---hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC---eEEEEEccCCc----
Confidence 899997654332 4577899999999999975 3788888898 99999998766
Q ss_pred eeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCCCCEEEEEEccceec
Q 005140 504 VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 504 ~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
+++.+..| +|.+++|||+|+|+++|+. ||.|.||+++++++++.. ..+.|..++|+.+|.+|..+..
T Consensus 444 --~i~~f~kH~~pVysvafS~~g~ylAsGs~---dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s----- 513 (524)
T KOG0273|consen 444 --PIHTLMKHQEPVYSVAFSPNGRYLASGSL---DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS----- 513 (524)
T ss_pred --eeEeeccCCCceEEEEecCCCcEEEecCC---CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec-----
Confidence 77777555 7999999999999999998 999999999999999874 4467899999999999999988
Q ss_pred cccEEEEEec
Q 005140 581 ENGFNIWSFN 590 (712)
Q Consensus 581 d~~v~iw~~~ 590 (712)
|+.+++-|+.
T Consensus 514 d~~vcvldlr 523 (524)
T KOG0273|consen 514 DGSVCVLDLR 523 (524)
T ss_pred CCCceEEEec
Confidence 8999988763
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=270.34 Aligned_cols=271 Identities=16% Similarity=0.249 Sum_probs=233.2
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--C
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--D 331 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g 331 (712)
..|..+.||+|++.||||+.+ |.++||+..++..+.+|.+|...+. ++.|+| . +
T Consensus 176 rPis~~~fS~ds~~laT~sws----------G~~kvW~~~~~~~~~~l~gH~~~v~-------------~~~fhP-~~~~ 231 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWS----------GLVKVWSVPQCNLLQTLRGHTSRVG-------------AAVFHP-VDSD 231 (459)
T ss_pred CcceeeEeecCCCeEEEeecC----------CceeEeecCCcceeEEEecccccee-------------eEEEcc-CCCc
Confidence 348899999999999999999 9999999999999999999998874 789999 5 5
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
..+|+++ ||++++|++.+-.++.....|...|..++|+|+|++|++ ++-|.+.++|....
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~T-----asfD~tWRlWD~~t-------------- 292 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGT-----ASFDSTWRLWDLET-------------- 292 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeee-----cccccchhhccccc--------------
Confidence 6899999 999999999988888888888888999999999999998 77777766554322
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
+. +.+...||...|.+++|.|||..+++|+.|. .-
T Consensus 293 ---------------------------------------k~---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~---~~ 327 (459)
T KOG0272|consen 293 ---------------------------------------KS---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDS---LG 327 (459)
T ss_pred ---------------------------------------ch---hhHhhcccccccceeEecCCCceeeccCccc---hh
Confidence 11 1122348999999999999999999999998 78
Q ss_pred EEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC-
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP- 565 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp- 565 (712)
+|||++++. .+..+.+| +|.+++|||+|..|++|+. |++++|||++....+.+ .|..-|+.+.|+|
T Consensus 328 RvWDlRtgr------~im~L~gH~k~I~~V~fsPNGy~lATgs~---Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 328 RVWDLRTGR------CIMFLAGHIKEILSVAFSPNGYHLATGSS---DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred heeecccCc------EEEEecccccceeeEeECCCceEEeecCC---CCcEEEeeecccccceecccccchhhheEeccc
Confidence 999999876 56666666 7999999999999999998 99999999998777766 6778899999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEecCCCCCCChhhHHHHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAKN 626 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~~ 626 (712)
.|.+|+|++. |++++||.-.+ .++... |.+.|.++..+|++..++|++-|.+||-|
T Consensus 399 ~g~fL~Tasy-----D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 399 EGYFLVTASY-----DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred CCeEEEEccc-----CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 7889999999 99999999764 444433 77999999999999999999999988743
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=266.91 Aligned_cols=358 Identities=16% Similarity=0.291 Sum_probs=286.3
Q ss_pred CCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC--ceEEeecccCcceeeee--cCCCe
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ--GAAVWGGANTFNRLMRY--AHPQV 256 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~--~i~iw~~~~~~~~~~~~--~~~~v 256 (712)
+-..+++.+..+...++.+ .....+..+.-....|..++|+..|.+||.|+.. .+.||++. +..-+... |...+
T Consensus 276 ~t~~lvvgFssG~f~Lyel-P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH~~~i 353 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYEL-PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGHSDRI 353 (893)
T ss_pred CceEEEEEecCCeeEEEec-CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeeccccccce
Confidence 3346677777777778888 4666666777777889999999999999999987 38899998 44444333 34569
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
.++++||||++||||+.| +.|+|||..+|-++.+|..|...++ .++|+. .|+.+.+
T Consensus 354 ~~l~YSpDgq~iaTG~eD----------gKVKvWn~~SgfC~vTFteHts~Vt-------------~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAED----------GKVKVWNTQSGFCFVTFTEHTSGVT-------------AVQFTA-RGNVLLS 409 (893)
T ss_pred eeEEECCCCcEEEeccCC----------CcEEEEeccCceEEEEeccCCCceE-------------EEEEEe-cCCEEEE
Confidence 999999999999999999 9999999999999999999988775 799999 9999999
Q ss_pred ec-CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
.+ ||+|+.||+.............+ ...+++..|.|..++. +.-....|++|+..+++.+.....|..+...
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A------G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA------GAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe------eccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 99 99999999987665544433332 3678999999988874 4556778999999999999999999999999
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
+.|+|.|..|++++.|.+ +++|++-.....++++.+ ...+.+++|+|+|+.+|++.-|| .|.|||
T Consensus 484 l~f~~~~~~LaS~SWDkT---------VRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~elaVaTldg---qItf~d 548 (893)
T KOG0291|consen 484 LSFSPDGSLLASGSWDKT---------VRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELAVATLDG---QITFFD 548 (893)
T ss_pred eEEccccCeEEeccccce---------EEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEEEEEecc---eEEEEE
Confidence 999999999999999988 899999887777777777 88999999999999999999999 999999
Q ss_pred eecccccCcee-------------EE---EEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-------
Q 005140 495 MRTAQHAGRVS-------------KL---TTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA------- 551 (712)
Q Consensus 495 ~~~~~~~~~~~-------------~~---~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~------- 551 (712)
+..+.....+. .+ ..-.+...+.+++|+||.+|++|+. ...|++|++.++-+++
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~---sn~iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE---SNSICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC---cccEEEEECchhheeeeEEeccc
Confidence 87543211110 01 1112345788999999999999998 8999999987521111
Q ss_pred -------------------------e--------------------------ccccceeeEEECCCCCEEEEEEccceec
Q 005140 552 -------------------------T--------------------------AEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 552 -------------------------~--------------------------~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
+ ...-.|+++.|||+|+-+|.++.
T Consensus 626 ~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatT----- 700 (893)
T KOG0291|consen 626 RSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATT----- 700 (893)
T ss_pred cchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecc-----
Confidence 0 00124678999999999999998
Q ss_pred cccEEEEEecCcee
Q 005140 581 ENGFNIWSFNGKLL 594 (712)
Q Consensus 581 d~~v~iw~~~g~~~ 594 (712)
-++.||.++...+
T Consensus 701 -EGl~IYsld~~~~ 713 (893)
T KOG0291|consen 701 -EGLLIYSLDTTIL 713 (893)
T ss_pred -cceEEEecCCceE
Confidence 5788888865443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=235.42 Aligned_cols=281 Identities=15% Similarity=0.237 Sum_probs=225.1
Q ss_pred ccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeeccc----Ccceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGAN----TFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~----~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
..+.+|..-|+.++..+. -..|++++.|. +++|++.. .+..+.++ .|.. |..+..|+||++.++++.|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD---- 84 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD---- 84 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc----
Confidence 467899999999999987 46788889998 77998752 23345555 3554 9999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+++++||+.+|+..+.|.+|...+. +++||+ |...|++++ |++|.+|++..........
T Consensus 85 ------~~lrlWDl~~g~~t~~f~GH~~dVl-------------sva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~ 144 (315)
T KOG0279|consen 85 ------GTLRLWDLATGESTRRFVGHTKDVL-------------SVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHE 144 (315)
T ss_pred ------ceEEEEEecCCcEEEEEEecCCceE-------------EEEecC-CCceeecCCCcceeeeeeecccEEEEEec
Confidence 9999999999999999999998875 799999 999999999 9999999988554332221
Q ss_pred c-cccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccc
Q 005140 358 L-KVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 434 (712)
Q Consensus 358 ~-~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 434 (712)
. +.+-|.++.|+|. ..+|+. ++.|+.+++|..+.
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs-----~s~DktvKvWnl~~-------------------------------------- 181 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVS-----ASWDKTVKVWNLRN-------------------------------------- 181 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEE-----ccCCceEEEEccCC--------------------------------------
Confidence 2 1445999999998 677777 77787777664321
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC-C
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-K 513 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~ 513 (712)
... ...+.+|.+.++.+++||||...++++.|+ .+.+||++.+. .+.++.. .
T Consensus 182 ---------------~~l---~~~~~gh~~~v~t~~vSpDGslcasGgkdg---~~~LwdL~~~k------~lysl~a~~ 234 (315)
T KOG0279|consen 182 ---------------CQL---RTTFIGHSGYVNTVTVSPDGSLCASGGKDG---EAMLWDLNEGK------NLYSLEAFD 234 (315)
T ss_pred ---------------cch---hhccccccccEEEEEECCCCCEEecCCCCc---eEEEEEccCCc------eeEeccCCC
Confidence 000 023458899999999999999999999999 99999998765 5667664 4
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee------cc-----ccceeeEEECCCCCEEEEEEccceeccc
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT------AE-----HFMATDVEWDPTGRYVATAVTSVHEMEN 582 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~------~~-----~~~v~~~~~spdg~~l~t~s~~~~~~d~ 582 (712)
.|++++|+|+--+|+.+. +..|+|||+.+..++.. +. ...+.+++||+||..|+.+-. |+
T Consensus 235 ~v~sl~fspnrywL~~at----~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-----d~ 305 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAAT----ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-----DN 305 (315)
T ss_pred eEeeEEecCCceeEeecc----CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec-----CC
Confidence 789999999987777665 56799999998776653 11 345678999999999999999 99
Q ss_pred cEEEEEec
Q 005140 583 GFNIWSFN 590 (712)
Q Consensus 583 ~v~iw~~~ 590 (712)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-30 Score=227.93 Aligned_cols=272 Identities=14% Similarity=0.290 Sum_probs=223.5
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eee
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMR 299 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~ 299 (712)
.-+||+++.|. |++|... ++.+..+++|+. |..+.++||+++||+++.. .|++||+.++. ++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~-tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-----------hvRlyD~~S~np~Pv~ 77 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQAL-TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-----------HVRLYDLNSNNPNPVA 77 (311)
T ss_pred ceEEEeccCcceeeeeehh-cCeEEEEEecCccceeeEEEcCCcchhhhccCC-----------eeEEEEccCCCCCcee
Confidence 35899999998 8899999 999999998885 9999999999999999877 79999998886 589
Q ss_pred eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEE
Q 005140 300 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLF 378 (712)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~ 378 (712)
+|.+|...++ ++.|.. +|+.+++++ ||+++|||+......... .+...|+++..+|+...|++
T Consensus 78 t~e~h~kNVt-------------aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis- 141 (311)
T KOG0315|consen 78 TFEGHTKNVT-------------AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELIS- 141 (311)
T ss_pred EEeccCCceE-------------EEEEee-cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEe-
Confidence 9999977764 789999 999999999 999999999974443333 34467999999999888887
Q ss_pred eecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005140 379 VPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 458 (712)
Q Consensus 379 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 458 (712)
+++.+.|++|++....... .-
T Consensus 142 ------~dqsg~irvWDl~~~~c~~-----------------------------------------------------~l 162 (311)
T KOG0315|consen 142 ------GDQSGNIRVWDLGENSCTH-----------------------------------------------------EL 162 (311)
T ss_pred ------ecCCCcEEEEEccCCcccc-----------------------------------------------------cc
Confidence 7777777777764321100 00
Q ss_pred ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCC
Q 005140 459 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFN 536 (712)
Q Consensus 459 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~d 536 (712)
++.-...|.+++..|||++++.+...| +.++|++-.......+.++..++.| .+..+.+|||+++|++++. |
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG---~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss---d 236 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKG---NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS---D 236 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCc---cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC---C
Confidence 111245788899999999999999888 9999999876665566777777755 5788999999999999998 9
Q ss_pred ceEEEEECCcc---eeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Ccee
Q 005140 537 GQLEFYNVDEL---ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLL 594 (712)
Q Consensus 537 g~v~iwd~~~~---~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~ 594 (712)
.+++||+.++. ++..++|..-+.+++||.||+||+|++. |+..++|++. |+.+
T Consensus 237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass-----d~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS-----DHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC-----CCceeecccccCcee
Confidence 99999999976 3334577789999999999999999999 9999999987 4433
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-30 Score=233.43 Aligned_cols=276 Identities=14% Similarity=0.210 Sum_probs=226.4
Q ss_pred eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 247 RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 247 ~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
++.+.|...|.++.|++|.++|++++.| |.+.|||..|....+.++.+..-+. .++|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqD----------GklIvWDs~TtnK~haipl~s~WVM-------------tCA~ 105 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQD----------GKLIVWDSFTTNKVHAIPLPSSWVM-------------TCAY 105 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccC----------CeEEEEEcccccceeEEecCceeEE-------------EEEE
Confidence 5555566679999999999999999999 9999999999998888888776553 5899
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCc--e----ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESF--T----LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~--~----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+| .|+++|+++ |+...||++.+. . .......|..-+.+..|-+|+. |++ +++|.+..+|.++ +.
T Consensus 106 sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT-----~SGD~TCalWDie--~g 176 (343)
T KOG0286|consen 106 SP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILT-----GSGDMTCALWDIE--TG 176 (343)
T ss_pred CC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc-eEe-----cCCCceEEEEEcc--cc
Confidence 99 999999999 999999999844 1 2222345667788888887554 445 6677666554332 21
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRF 478 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l 478 (712)
+ ....+.+|.+.|.+++++| +++.|
T Consensus 177 ~------------------------------------------------------~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 177 Q------------------------------------------------------QTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred e------------------------------------------------------EEEEecCCcccEEEEecCCCCCCeE
Confidence 1 1134568999999999999 99999
Q ss_pred EEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc--
Q 005140 479 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-- 554 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-- 554 (712)
++++.|+ ..++||++.+. ...++.+| .|++++|.|+|.-+++|+. |++.++||++..+.+....
T Consensus 203 vSg~cD~---~aklWD~R~~~------c~qtF~ghesDINsv~ffP~G~afatGSD---D~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 203 VSGGCDK---SAKLWDVRSGQ------CVQTFEGHESDINSVRFFPSGDAFATGSD---DATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred Eeccccc---ceeeeeccCcc------eeEeecccccccceEEEccCCCeeeecCC---CceeEEEeecCCcEEeeeccC
Confidence 9999999 89999998875 67788777 6999999999999999998 9999999999877766533
Q ss_pred --ccceeeEEECCCCCEEEEEEccceeccccEEEEEe-cCceeeee--cccceeeeEEecCCCCCCChhhHHHHHH
Q 005140 555 --HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF-NGKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAK 625 (712)
Q Consensus 555 --~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~-~g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~ 625 (712)
..+|++++||..|++|.+|.. |.++.+||. .++.+... |..+|.++..+|+|..+.|++-|..+|-
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~-----d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYD-----DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred cccCCceeEEEcccccEEEeeec-----CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 368899999999999999988 999999994 56655443 7899999999999999999999988774
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=229.55 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=210.1
Q ss_pred CCCCceEEEEECCeeEEEecCCC----CCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-c
Q 005140 179 EKARDQFVIRSGTDTEVLWNDAR----HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A 252 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~----~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~ 252 (712)
+++++.++....|.+++.|.+.. .+.+.+.|++|...|+.+..|+||++.++++.|+ +++||+. +++...+| .
T Consensus 25 ~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-~g~~t~~f~G 103 (315)
T KOG0279|consen 25 IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-TGESTRRFVG 103 (315)
T ss_pred cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec-CCcEEEEEEe
Confidence 44667777778889999998743 3456788999999999999999999999999999 7899999 66766666 3
Q ss_pred CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCC
Q 005140 253 HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 253 ~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
|. .|.+++||||.+.|++|+.| .+|++|++. |.+..++..+ ..-++ +++|+|
T Consensus 104 H~~dVlsva~s~dn~qivSGSrD----------kTiklwnt~-g~ck~t~~~~~~~~WVs-------------cvrfsP- 158 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRD----------KTIKLWNTL-GVCKYTIHEDSHREWVS-------------CVRFSP- 158 (315)
T ss_pred cCCceEEEEecCCCceeecCCCc----------ceeeeeeec-ccEEEEEecCCCcCcEE-------------EEEEcC-
Confidence 44 59999999999999999999 999999974 4444444433 33332 899999
Q ss_pred C--CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 330 K--DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 330 d--g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
+ .-+|++++ |+++++||+.+.++......|...++.+++||||..+++ |+.++.+.+ |++...+.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas-----Ggkdg~~~L--wdL~~~k~----- 226 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS-----GGKDGEAML--WDLNEGKN----- 226 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec-----CCCCceEEE--EEccCCce-----
Confidence 7 66899999 999999999999988888888899999999999999998 655555443 33322211
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
+ ..+ +|...|.+++|+|+--.|+.+...
T Consensus 227 -------------------------------------l------------ysl-~a~~~v~sl~fspnrywL~~at~~-- 254 (315)
T KOG0279|consen 227 -------------------------------------L------------YSL-EAFDIVNSLCFSPNRYWLCAATAT-- 254 (315)
T ss_pred -------------------------------------e------------Eec-cCCCeEeeEEecCCceeEeeccCC--
Confidence 1 112 568899999999998877777664
Q ss_pred CCeEEEEEeecccccCceeEEEE---eC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTT---LK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~---~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|+|||+.++.....+++-.. .. ...+.+++||+||..|+.+-. |+.|++|.+.
T Consensus 255 --sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t---d~~irv~qv~ 313 (315)
T KOG0279|consen 255 --SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT---DNVIRVWQVA 313 (315)
T ss_pred --ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec---CCcEEEEEee
Confidence 599999987653222211111 11 113577999999999999988 9999999764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=245.30 Aligned_cols=311 Identities=16% Similarity=0.271 Sum_probs=242.4
Q ss_pred CCCCCceEEEEECCeeEEEecCCC-CCC--Cccccc------C----CCcccceEEEcCCCcEEEEEecCc-eEEeeccc
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDAR-HLK--PEPVYK------R----SYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN 243 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~-~~~--~~~~~~------~----~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~ 243 (712)
+|-....|+.+.++.+..+|++.. ... ....|. + ....|++++|+.+|++||+|+.+| ++||+..
T Consensus 187 nP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~- 265 (524)
T KOG0273|consen 187 NPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD- 265 (524)
T ss_pred CchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-
Confidence 333333678888888999999853 111 111121 1 225689999999999999999999 7899998
Q ss_pred Ccceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 244 TFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 244 ~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
+.++.++ |...|.++.|+.+|.||++++.| +++.+||..+|.....|..|.....
T Consensus 266 -G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD----------~ttilwd~~~g~~~q~f~~~s~~~l------------ 322 (524)
T KOG0273|consen 266 -GNLISTLGQHKGPIFSLKWNKKGTYILSGGVD----------GTTILWDAHTGTVKQQFEFHSAPAL------------ 322 (524)
T ss_pred -chhhhhhhccCCceEEEEEcCCCCEEEeccCC----------ccEEEEeccCceEEEeeeeccCCcc------------
Confidence 3444444 44459999999999999999999 9999999999999998888876621
Q ss_pred CeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 322 PVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.+.|-. +..+..+..|+.|+||.+....++.++..|...|.++.|.|.|..|++ ++.|++.+||...- ...
T Consensus 323 -DVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS-----~SdD~TlkiWs~~~--~~~ 393 (524)
T KOG0273|consen 323 -DVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS-----CSDDGTLKIWSMGQ--SNS 393 (524)
T ss_pred -ceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE-----ecCCCeeEeeecCC--Ccc
Confidence 478876 655554445999999999887888777789999999999999999999 88999988876432 222
Q ss_pred eeeeeeeeecceeEEECcCCC---------EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 402 LRQKNLFSVSDCKMYWQSSGD---------YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~---------~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
......|...+..+.|+|.|. .++.++.+.+ +.+|++.. ......+..|..+|.+++||
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst---------V~lwdv~~---gv~i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST---------VKLWDVES---GVPIHTLMKHQEPVYSVAFS 461 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe---------EEEEEccC---CceeEeeccCCCceEEEEec
Confidence 222333455566778888764 5677777766 78898864 23345677899999999999
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|+|+++|+|+.|+ .|.||+.+++. .++...+. .|..++|+.+|.+|..+.. ++.+++.|++
T Consensus 462 ~~g~ylAsGs~dg---~V~iws~~~~~------l~~s~~~~~~Ifel~Wn~~G~kl~~~~s---d~~vcvldlr 523 (524)
T KOG0273|consen 462 PNGRYLASGSLDG---CVHIWSTKTGK------LVKSYQGTGGIFELCWNAAGDKLGACAS---DGSVCVLDLR 523 (524)
T ss_pred CCCcEEEecCCCC---eeEeccccchh------eeEeecCCCeEEEEEEcCCCCEEEEEec---CCCceEEEec
Confidence 9999999999999 99999998765 67776644 6899999999999988887 9999998875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=260.64 Aligned_cols=391 Identities=14% Similarity=0.145 Sum_probs=293.7
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcE--EEEEecCc-eEEeecccCcceeeee
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTY--LATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~--lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
+.++|-+ ..++.+..++.+.+|++ ........|++|.+.|.++.|.|+-.+ |++|..|+ +++||+......+..+
T Consensus 111 ma~~~~g-~LlAtggaD~~v~VWdi-~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~ 188 (775)
T KOG0319|consen 111 MAFDPTG-TLLATGGADGRVKVWDI-KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM 188 (775)
T ss_pred EEEcCCC-ceEEeccccceEEEEEe-eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH
Confidence 4556656 66677777899999999 677788899999999999999998765 88888898 8899998333323333
Q ss_pred --cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 --AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 --~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
|...|++++|++|+.-+++++.| ..+.|||+.+.+.+++++.....- .+.+-+
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~~RD----------kvi~vwd~~~~~~l~~lp~ye~~E--------------~vv~l~- 243 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSVGRD----------KVIIVWDLVQYKKLKTLPLYESLE--------------SVVRLR- 243 (775)
T ss_pred HhhhhheeeeeeccCCceEEEeccC----------cEEEEeehhhhhhhheechhhhee--------------eEEEec-
Confidence 45569999999999999999999 899999998877777765543322 344444
Q ss_pred C-----CCEEEEec-CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 330 K-----DKYFAKLG-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 330 d-----g~~la~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+ +.++.+.+ +|.+++|+..+++.+.+.... .+.+..+...+..+.++..+ .++ .+.+|+..+.+..
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt-----aeQ--nl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT-----AEQ--NLFLYDEDELTIV 316 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE-----ccc--eEEEEEccccEEe
Confidence 4 56888888 999999999998877554333 33355555545444444422 333 4566677776666
Q ss_pred eeeeeeeecceeE-EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE
Q 005140 403 RQKNLFSVSDCKM-YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 403 ~~~~~~~~~~~~~-~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
++.-.++..+..| .|.|..++|+++++... +++|.+...... -+++|...|.++....+|.+|+++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~---------lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPE---------LRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATG 383 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCc---------eEEEecCCCceE----EEeCchhheeeeeecccCcEEEEe
Confidence 6665566666666 57899999999998766 788866544332 467999999999966688999999
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC-CeEEEEeccCCCceEEEEECCc-------cee--
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDE-------LET-- 549 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~-------~~~-- 549 (712)
+.|. ++++|.++.+... ...+.... .+.+.+++++..| .++++++. |+++++|++.. ...
T Consensus 384 sKD~---svilWr~~~~~~~--~~~~a~~~gH~~svgava~~~~~asffvsvS~---D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 384 SKDK---SVILWRLNNNCSK--SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ---DCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred cCCc---eEEEEEecCCcch--hhhhhhhcccccccceeeecccCccEEEEecC---CceEEEecCCCcccccccceehh
Confidence 9999 9999999443321 11222233 3468889997765 47778887 99999999985 111
Q ss_pred --eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 550 --MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 550 --~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
....|...|++++.+|+.+.|||||. |.+.+||++. +.++... |...++++.|+|..+.++|+|.|++||
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-----DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQ-----DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEeccc-----ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 12368899999999999999999999 9999999997 3343333 778999999999999999999999886
Q ss_pred H
Q 005140 625 K 625 (712)
Q Consensus 625 ~ 625 (712)
-
T Consensus 531 I 531 (775)
T KOG0319|consen 531 I 531 (775)
T ss_pred E
Confidence 3
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=254.71 Aligned_cols=329 Identities=12% Similarity=0.220 Sum_probs=250.3
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCC--------cccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCc
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKP--------EPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTF 245 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~ 245 (712)
+|..++... .-++...+.++-++.++...++ ...+.+|+..|+++++|.+...+++++++.++||+.. +.
T Consensus 327 dv~~~~~~~-~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~-t~ 404 (888)
T KOG0306|consen 327 DVTPSGGTE-NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRD-TL 404 (888)
T ss_pred EEEecCCcc-eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEcc-Cc
Confidence 566666666 3333444555545544332221 1356899999999999999999999999999999999 99
Q ss_pred ceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 246 NRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 246 ~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
+.+.++....+.+..|-|.++++++|... |.+.+||+.+...+.+++.|.+.+ |+ ++
T Consensus 405 kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~----------Gel~vfdlaS~~l~Eti~AHdgaI------------Ws-i~ 461 (888)
T KOG0306|consen 405 KCIRTITCGYILASKFVPGDRYIVLGTKN----------GELQVFDLASASLVETIRAHDGAI------------WS-IS 461 (888)
T ss_pred ceeEEeccccEEEEEecCCCceEEEeccC----------CceEEEEeehhhhhhhhhccccce------------ee-ee
Confidence 99999998899999999999999999999 999999999999999999998887 86 99
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
.+| |++.+++++ |++|++|+..-....... . .+.|..- .... ++
T Consensus 462 ~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt---~-----------~k~lsl~------~~rt-----Le--------- 506 (888)
T KOG0306|consen 462 LSP-DNKGFVTGSADKTVKFWDFKLVVSVPGT---Q-----------KKVLSLK------HTRT-----LE--------- 506 (888)
T ss_pred ecC-CCCceEEecCCcEEEEEeEEEEeccCcc---c-----------ceeeeec------cceE-----Ee---------
Confidence 999 999999999 999999996521110000 0 0000000 0000 00
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
......++.+||||++||++.-+++ +.+|.++.-. -.+.+.||.-||.|+..|||++.+++++.|
T Consensus 507 ---l~ddvL~v~~Spdgk~LaVsLLdnT---------VkVyflDtlK---FflsLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 507 ---LEDDVLCVSVSPDGKLLAVSLLDNT---------VKVYFLDTLK---FFLSLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred ---ccccEEEEEEcCCCcEEEEEeccCe---------EEEEEeccee---eeeeecccccceeEEeccCCcCeEEeccCC
Confidence 1112223344555555555555554 4555554321 125677999999999999999999999999
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceee
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATD 560 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~ 560 (712)
. +|++|-++-|. ..+++..| .|.++.|-|+...+++++. |+.|+-||-...+.+.+ +|+..|.+
T Consensus 572 K---nVKiWGLdFGD------CHKS~fAHdDSvm~V~F~P~~~~FFt~gK---D~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 572 K---NVKIWGLDFGD------CHKSFFAHDDSVMSVQFLPKTHLFFTCGK---DGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred C---ceEEeccccch------hhhhhhcccCceeEEEEcccceeEEEecC---cceEEeechhhhhhheeeccchheeee
Confidence 9 99999997665 45566554 7899999999999999998 99999999998888776 78899999
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
++.+|+|.|+++++. |.+|++|.-....+
T Consensus 640 Lav~~~G~~vvs~sh-----D~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSH-----DKSIRLWERTDEIL 668 (888)
T ss_pred eEEcCCCCeEEeccC-----CceeEeeeccCcce
Confidence 999999999999999 99999999775443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=244.27 Aligned_cols=286 Identities=16% Similarity=0.260 Sum_probs=211.1
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccC--cceeeee--cCCCeeEEEecCCCCEEEEEcCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT--FNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~--~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
.+....++.|...|..++||++|+|||+++.+. ..||.+... .+...++ ++..|..+.||||.+||++++.+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~--- 290 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD--- 290 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch---
Confidence 345556789999999999999999999999999 558876522 2334443 45569999999999999999999
Q ss_pred CCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc
Q 005140 278 NPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
..+++||+.+|.+.+.+....+.. -.+++|.| ||..+++|+ |+++..|+++....-.-.
T Consensus 291 -------e~~~lwDv~tgd~~~~y~~~~~~S------------~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~ 350 (519)
T KOG0293|consen 291 -------EVLSLWDVDTGDLRHLYPSGLGFS------------VSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWE 350 (519)
T ss_pred -------HheeeccCCcchhhhhcccCcCCC------------cceeEEcc-CCceeEecCCCCcEEEecCCcchhhccc
Confidence 789999999999988876652211 11789999 999999999 999999999843221111
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
-...+.|.+++.++||++++.. ..|.. |.+|+......
T Consensus 351 gvr~~~v~dlait~Dgk~vl~v-----~~d~~--i~l~~~e~~~d----------------------------------- 388 (519)
T KOG0293|consen 351 GVRDPKVHDLAITYDGKYVLLV-----TVDKK--IRLYNREARVD----------------------------------- 388 (519)
T ss_pred ccccceeEEEEEcCCCcEEEEE-----ecccc--eeeechhhhhh-----------------------------------
Confidence 2344568899999999988872 22222 22222111000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc--
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 514 (712)
...++. ..+|++++.|.+|+++++.-.+. .+++||+.... .+..+.++.
T Consensus 389 -----------------r~lise---~~~its~~iS~d~k~~LvnL~~q---ei~LWDl~e~~------lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 389 -----------------RGLISE---EQPITSFSISKDGKLALVNLQDQ---EIHLWDLEENK------LVRKYFGHKQG 439 (519)
T ss_pred -----------------hccccc---cCceeEEEEcCCCcEEEEEcccC---eeEEeecchhh------HHHHhhccccc
Confidence 001122 67899999999999999988888 89999997432 344444442
Q ss_pred --eeEEEEc-cCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCC-EEEEEEccceeccccEEEEE
Q 005140 515 --ANALFWS-PSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 --v~~l~~s-pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~ 588 (712)
+-.-+|- -+..++++|+. |+.|+||+..+++++.. +|...|++++|+|... .+|+++. ||+|+||.
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSE---D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD-----DgtIRIWg 511 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSE---DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD-----DGTIRIWG 511 (519)
T ss_pred ceEEEeccCCCCcceEEecCC---CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC-----CCeEEEec
Confidence 2222232 35578999998 99999999999999875 8889999999999665 6788888 99999997
Q ss_pred ec
Q 005140 589 FN 590 (712)
Q Consensus 589 ~~ 590 (712)
..
T Consensus 512 ~~ 513 (519)
T KOG0293|consen 512 PS 513 (519)
T ss_pred CC
Confidence 65
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=220.38 Aligned_cols=283 Identities=18% Similarity=0.370 Sum_probs=222.4
Q ss_pred CcccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeeccc--Ccceeeee---cCCCeeEEEecCCCCEEEEEcCCCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGAN--TFNRLMRY---AHPQVKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~--~~~~~~~~---~~~~v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
.+..+++|...+..++|+|- |..||+++.+. |+||+... +......+ |...|++++|||.|+||++++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD--- 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD--- 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---
Confidence 34567899999999999998 99999999999 89999872 12222222 33459999999999999999999
Q ss_pred CCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc---e
Q 005140 278 NPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF---T 351 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~---~ 351 (712)
.++.||.-..+ +++.++.+|...+. +++||+ +|.|||+++ |++|-||.+... .
T Consensus 83 -------~t~~Iw~k~~~efecv~~lEGHEnEVK-------------~Vaws~-sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 83 -------ATVVIWKKEDGEFECVATLEGHENEVK-------------CVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred -------ceEEEeecCCCceeEEeeeecccccee-------------EEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 99999985444 57889999988874 899999 999999999 999999998743 3
Q ss_pred ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 352 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
.+..+..|...|..+.|+|....|++ ++.|+++++|.-. +++.+.++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S-----~SYDnTIk~~~~~-----------------------~dddW~c~----- 188 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFS-----CSYDNTIKVYRDE-----------------------DDDDWECV----- 188 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEE-----eccCCeEEEEeec-----------------------CCCCeeEE-----
Confidence 45555678888999999998888888 7788887766432 13333322
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
.++.+|...|.+++|+|.|.+|++++.|+ +|+||...+ .+..+.
T Consensus 189 -------------------------~tl~g~~~TVW~~~F~~~G~rl~s~sdD~---tv~Iw~~~~--------~~~~~~ 232 (312)
T KOG0645|consen 189 -------------------------QTLDGHENTVWSLAFDNIGSRLVSCSDDG---TVSIWRLYT--------DLSGMH 232 (312)
T ss_pred -------------------------EEecCccceEEEEEecCCCceEEEecCCc---ceEeeeecc--------Ccchhc
Confidence 34557888999999999999999999999 999998642 233344
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc------ceeee---eccccceeeEEECCC-CCEEEEEEccceecc
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE------LETMA---TAEHFMATDVEWDPT-GRYVATAVTSVHEME 581 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~------~~~~~---~~~~~~v~~~~~spd-g~~l~t~s~~~~~~d 581 (712)
..++..+.|. ...|++++. |+.|++|.-.. .+++. ..|...|++++|+|. ...|++++. |
T Consensus 233 sr~~Y~v~W~--~~~IaS~gg---D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D-----D 302 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGG---DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD-----D 302 (312)
T ss_pred ccceEeeeec--ccceEeccC---CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC-----C
Confidence 4578889998 447888887 99999997653 22222 256678999999996 567888888 9
Q ss_pred ccEEEEEec
Q 005140 582 NGFNIWSFN 590 (712)
Q Consensus 582 ~~v~iw~~~ 590 (712)
|.+++|.+.
T Consensus 303 G~v~~W~l~ 311 (312)
T KOG0645|consen 303 GIVNFWELE 311 (312)
T ss_pred ceEEEEEec
Confidence 999999874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=218.08 Aligned_cols=287 Identities=13% Similarity=0.172 Sum_probs=221.8
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcc-eeeeec-C-CCeeEEEe
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFN-RLMRYA-H-PQVKLIDF 261 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~-~~~~~~-~-~~v~~i~~ 261 (712)
++..+-|.++.+|.. ..+.+...++.....|+.+..+||+++||.++...|++||+.++.. ++.+|. | .+|..+.|
T Consensus 13 LvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 344445788889998 7899999999999999999999999999999999999999983333 567763 4 56999999
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CC
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN 340 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~ 340 (712)
.-+|+.++||+.| |+++|||++.-.+.+.|... ..+. ++...| +..-|+++. +|
T Consensus 92 ~~dgrWMyTgseD----------gt~kIWdlR~~~~qR~~~~~-spVn-------------~vvlhp-nQteLis~dqsg 146 (311)
T KOG0315|consen 92 QCDGRWMYTGSED----------GTVKIWDLRSLSCQRNYQHN-SPVN-------------TVVLHP-NQTELISGDQSG 146 (311)
T ss_pred eecCeEEEecCCC----------ceEEEEeccCcccchhccCC-CCcc-------------eEEecC-CcceEEeecCCC
Confidence 9999999999999 99999999987777766655 3332 688899 877888888 99
Q ss_pred eEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 341 MISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
.|++||+.......... -....|+++...|||..|+. .+..++.+.|++........
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a-------~nnkG~cyvW~l~~~~~~s~--------------- 204 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA-------ANNKGNCYVWRLLNHQTASE--------------- 204 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE-------ecCCccEEEEEccCCCcccc---------------
Confidence 99999998653322221 12235889999999999887 45555566665533110000
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+ .| ...++.|++.+....+||++++||+++.|. +++||+.++.
T Consensus 205 ------------------------l-------~P--~~k~~ah~~~il~C~lSPd~k~lat~ssdk---tv~iwn~~~~- 247 (311)
T KOG0315|consen 205 ------------------------L-------EP--VHKFQAHNGHILRCLLSPDVKYLATCSSDK---TVKIWNTDDF- 247 (311)
T ss_pred ------------------------c-------eE--hhheecccceEEEEEECCCCcEEEeecCCc---eEEEEecCCc-
Confidence 0 11 123567899999999999999999999999 9999999654
Q ss_pred ccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEE
Q 005140 500 HAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW 563 (712)
Q Consensus 500 ~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~ 563 (712)
++.-..+.+| .+...+||.||+||++|+. |+.+++|++..++.+.. +|+....+++.
T Consensus 248 ----~kle~~l~gh~rWvWdc~FS~dg~YlvTass---d~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 248 ----FKLELVLTGHQRWVWDCAFSADGEYLVTASS---DHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ----eeeEEEeecCCceEEeeeeccCccEEEecCC---CCceeecccccCceeeecCCcccccEEEEe
Confidence 2244555555 6899999999999999998 99999999999987664 66666666554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=230.25 Aligned_cols=316 Identities=14% Similarity=0.136 Sum_probs=239.6
Q ss_pred CCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCee
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVK 257 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~ 257 (712)
.....+.+++|....+|.. ..+.....+++|..+|+|+.||.||+|||||..+| +.||... ++.....+ ....+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-tg~~~~~~~~e~~die 152 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-TGGEQWKLDQEVEDIE 152 (399)
T ss_pred CCceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-cCceEEEeecccCceE
Confidence 3345677778899999999 56667778999999999999999999999999999 8899999 66655555 455699
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
-+.|+|-+..|+.|+.| |.|++|.+.++...+.+.+|....+ +=.|.| +|+.++++
T Consensus 153 Wl~WHp~a~illAG~~D----------GsvWmw~ip~~~~~kv~~Gh~~~ct-------------~G~f~p-dGKr~~tg 208 (399)
T KOG0296|consen 153 WLKWHPRAHILLAGSTD----------GSVWMWQIPSQALCKVMSGHNSPCT-------------CGEFIP-DGKRILTG 208 (399)
T ss_pred EEEecccccEEEeecCC----------CcEEEEECCCcceeeEecCCCCCcc-------------cccccC-CCceEEEE
Confidence 99999999999999999 9999999999888999999987764 568999 99999999
Q ss_pred c-CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeE
Q 005140 338 G-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 415 (712)
Q Consensus 338 ~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 415 (712)
. |++|++|+..++.++.+.... .....++.++..+..+.. ++.++.+.+ ....+.+.+...
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~-----g~~e~~~~~--~~~~sgKVv~~~---------- 271 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK-----GNSEGVACG--VNNGSGKVVNCN---------- 271 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe-----ccCCccEEE--EccccceEEEec----------
Confidence 9 999999999999877554321 123567777777777776 444444432 222111111000
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
++. .+............|.++.|+..-...|+++-|| +|.|||+
T Consensus 272 --n~~-------------------------------~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG---~i~iyD~ 315 (399)
T KOG0296|consen 272 --NGT-------------------------------VPELKPSQEELDESVESIPSSSKLPLAACGSVDG---TIAIYDL 315 (399)
T ss_pred --CCC-------------------------------Cccccccchhhhhhhhhcccccccchhhcccccc---eEEEEec
Confidence 000 0100001101123455556666677889999999 9999999
Q ss_pred ecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEE
Q 005140 496 RTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 496 ~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t 572 (712)
..... -+.+. ..+|..+.|-+ ..+|++++. +|.|+.||.++|+++.+ +|...|.+++.+|++++++|
T Consensus 316 a~~~~------R~~c~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 316 AASTL------RHICEHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred ccchh------heeccCCCceEEEEEcC-cchheeecc---CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEE
Confidence 65432 22222 33689999999 789999998 99999999999998875 78899999999999999999
Q ss_pred EEccceeccccEEEEEec
Q 005140 573 AVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~ 590 (712)
++. |+..+||...
T Consensus 386 ~s~-----D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSD-----DNTALVFEVP 398 (399)
T ss_pred ecC-----CCeEEEEecC
Confidence 999 9999998753
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=222.11 Aligned_cols=288 Identities=12% Similarity=0.163 Sum_probs=220.7
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee--eecCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM--RYAHPQVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~--~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
..++..+.+|...|+.+.|+|+|.+||||+.|. |.+|+..+..+-.. +.|...|..+.|.+|+..|++++.|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD----- 111 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTD----- 111 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCC-----
Confidence 346667899999999999999999999999998 88999764444333 3344459999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceeccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
.+|+.||+++|+.++.+++|...+. ++.-+. -| .++.+++ |+++++||+.+...+....
T Consensus 112 -----k~v~~wD~~tG~~~rk~k~h~~~vN-------------s~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 112 -----KTVRGWDAETGKRIRKHKGHTSFVN-------------SLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred -----ceEEEEecccceeeehhccccceee-------------ecCccc-cCCeEEEecCCCceEEEEeecccchhhccc
Confidence 9999999999999999999987653 232222 33 4556666 9999999999766554331
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
- .-.++++.|..++..+.+ |+-|+.+++|
T Consensus 173 ~-kyqltAv~f~d~s~qv~s-----ggIdn~ikvW--------------------------------------------- 201 (338)
T KOG0265|consen 173 N-KYQLTAVGFKDTSDQVIS-----GGIDNDIKVW--------------------------------------------- 201 (338)
T ss_pred c-ceeEEEEEecccccceee-----ccccCceeee---------------------------------------------
Confidence 1 223777778777766666 5555555543
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---- 513 (712)
+++.... ...+.+|.++|+.+..+|+|.++.+-+.|. ++++||++--....++..+..-..|
T Consensus 202 --------d~r~~d~---~~~lsGh~DtIt~lsls~~gs~llsnsMd~---tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 202 --------DLRKNDG---LYTLSGHADTITGLSLSRYGSFLLSNSMDN---TVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred --------ccccCcc---eEEeecccCceeeEEeccCCCccccccccc---eEEEEEecccCCCCceEEEeecchhhhhh
Confidence 3332211 134668999999999999999999999998 9999999764443343333332222
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
.....+|||+++++.+++. |..+++||......+.. +|.+.|++++|+|.-.+|.+++. |.++++=
T Consensus 268 nlL~cswsp~~~~i~ags~---dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s-----dk~i~lg 335 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSA---DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS-----DKTIYLG 335 (338)
T ss_pred hcceeeccCCCCccccccc---cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc-----CceeEee
Confidence 2356899999999999998 99999999998777765 78899999999999999999999 8888763
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=246.40 Aligned_cols=287 Identities=18% Similarity=0.295 Sum_probs=233.8
Q ss_pred CCCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.+.+..+.+|+..|+++.|.| .|.+|++++.|+ |+||++-....++.+|. |. .|.+++||++|..+++++.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD---- 279 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD---- 279 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc----
Confidence 455667899999999999999 999999999999 88999985677888873 44 49999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceecccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
+.|++||++||+++..|....... ++.|.| |+ +.|.+|+ |+.|+.||+.+++++...
T Consensus 280 ------~~lKlwDtETG~~~~~f~~~~~~~--------------cvkf~p-d~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 280 ------RFLKLWDTETGQVLSRFHLDKVPT--------------CVKFHP-DNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred ------eeeeeeccccceEEEEEecCCCce--------------eeecCC-CCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 999999999999999998776554 799999 88 5666666 999999999999999888
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..|.+.|..+.|-++|+.+++ .+.+..++||.|.++.......
T Consensus 339 d~hLg~i~~i~F~~~g~rFis-----sSDdks~riWe~~~~v~ik~i~-------------------------------- 381 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFIS-----SSDDKSVRIWENRIPVPIKNIA-------------------------------- 381 (503)
T ss_pred HhhhhheeeeEEccCCceEee-----eccCccEEEEEcCCCccchhhc--------------------------------
Confidence 889999999999999999998 7788999988887653210000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc--
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 514 (712)
. .+.-...++..+|++++++.-+.+. .|.+|.+... .+...-+.+.+|.
T Consensus 382 ---------------------~--~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~---~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 382 ---------------------D--PEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPP---FRLNKKKRFEGHSVA 432 (503)
T ss_pred ---------------------c--hhhccCcceecCCCCCeehhhccCc---eEEEEecccc---cccCHhhhhcceecc
Confidence 0 0012334677889999999888887 8888886432 1122333455553
Q ss_pred --eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCC-EEEEEEccceeccccEEEEE
Q 005140 515 --ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 --v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~ 588 (712)
...+.|||||++|++|.. +|.+.+||..+.+++.. .|...++.+.|.|-.. .+|+++. ||.|+||+
T Consensus 433 Gys~~v~fSpDG~~l~SGds---dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w-----~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDS---DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW-----DGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecC---CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc-----CceeEecC
Confidence 356899999999999998 99999999999888875 6678999999999654 6888888 99999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=239.76 Aligned_cols=274 Identities=18% Similarity=0.363 Sum_probs=219.3
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
...|..|.|.|+|+.|++|+..| +.+|++. ++. .+.+-|...|+++.||++|.++++|+.+ |.|++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g----------G~iKy 164 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGDKG----------GMIKY 164 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcCCC----------ceEEe
Confidence 35788999999999999999999 8899986 443 3333344459999999999999999999 99999
Q ss_pred EEccCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEE
Q 005140 290 FDVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFS 367 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 367 (712)
|+. +...++.+..|. ..+. +++||| ++..|++++ ||+|+|||....+....+..|.-.|.+++
T Consensus 165 Wqp-nmnnVk~~~ahh~eaIR-------------dlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 165 WQP-NMNNVKIIQAHHAEAIR-------------DLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred ccc-chhhhHHhhHhhhhhhh-------------eeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 996 566677777776 4432 799999 888888888 99999999887666555667777899999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
|+|....|++ +|.|+.+++ ||..+ |..|
T Consensus 230 WHP~kgLias-----gskDnlVKl--WDprS----------------------g~cl----------------------- 257 (464)
T KOG0284|consen 230 WHPTKGLIAS-----GSKDNLVKL--WDPRS----------------------GSCL----------------------- 257 (464)
T ss_pred cCCccceeEE-----ccCCceeEe--ecCCC----------------------cchh-----------------------
Confidence 9999999998 778775554 33222 2222
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGR 525 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~ 525 (712)
.++.+|+..|..+.|+|++++|++++.|. .+++||+++.+ .+..+.+| .++++.|+|-..
T Consensus 258 ---------~tlh~HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mk------El~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 258 ---------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMK------ELFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred ---------hhhhhccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhH------HHHHhhcchhhheeeccccccc
Confidence 23457889999999999999999999999 99999998544 45555555 689999999654
Q ss_pred -eEEEEeccCCCceEEEEECCcceeee---eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 526 -FIVLAGLKGFNGQLEFYNVDELETMA---TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 526 -~l~~~~~~~~dg~v~iwd~~~~~~~~---~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.|.+++. ||.|.+|.+...+.+. ..|...|++++|+|=|..|++|+. |.++++|.-.
T Consensus 320 ~lftsgg~---Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn-----d~t~rfw~r~ 380 (464)
T KOG0284|consen 320 SLFTSGGS---DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN-----DRTVRFWTRN 380 (464)
T ss_pred cceeeccC---CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC-----CcceeeeccC
Confidence 5666776 9999999988444433 378899999999999999999999 9999999754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=217.34 Aligned_cols=284 Identities=16% Similarity=0.273 Sum_probs=232.3
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee----cCCCeeEEEecCC-CCEEEEEcCCCCCCCc
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY----AHPQVKLIDFSPG-EKYLVTYSSHEPSNPR 280 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~----~~~~v~~i~~Spd-g~~l~t~s~d~~~~~~ 280 (712)
..+++|...|.+|+|+.+|+.||+++.++ +.+|+++ ........ ++..|-.++|+|. ...+++++.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d------ 86 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE-RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD------ 86 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEec-chhhhhhhcccCCCcchhhheeCCCCCcceEEecCC------
Confidence 45688999999999999999999999999 7899998 44433322 3445888999885 5688999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
.+|++||++.+++..........+ .+.|+| +|.+++.++ |..|.+.|..+.+........
T Consensus 87 ----k~ir~wd~r~~k~~~~i~~~~eni--------------~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 87 ----KTIRIWDIRSGKCTARIETKGENI--------------NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFK 147 (313)
T ss_pred ----ceEEEEEeccCcEEEEeeccCcce--------------EEEEcC-CCCEEEEecCcccEEEEEecccceeehhccc
Confidence 899999999999999888777766 689999 999999999 999999999877766544333
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
.. +..++|+-++..+.. .++.+.|-++..|+.+++...+.++..+.++.|+|+|+|+|+++.|..
T Consensus 148 ~e-~ne~~w~~~nd~Ffl-------t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl------- 212 (313)
T KOG1407|consen 148 FE-VNEISWNNSNDLFFL-------TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL------- 212 (313)
T ss_pred ce-eeeeeecCCCCEEEE-------ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-------
Confidence 33 788899977776666 556667778888999999999999999999999999999999999977
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANAL 518 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l 518 (712)
+.||++.+-- ....++.+..+|..++||.+|++||+++.|. .|-|-++++|. .+..++ ..+...+
T Consensus 213 --vSLWD~~ELi---C~R~isRldwpVRTlSFS~dg~~lASaSEDh---~IDIA~vetGd------~~~eI~~~~~t~tV 278 (313)
T KOG1407|consen 213 --VSLWDVDELI---CERCISRLDWPVRTLSFSHDGRMLASASEDH---FIDIAEVETGD------RVWEIPCEGPTFTV 278 (313)
T ss_pred --eeccChhHhh---hheeeccccCceEEEEeccCcceeeccCccc---eEEeEecccCC------eEEEeeccCCceeE
Confidence 7899887532 2344556699999999999999999999998 78888887776 566665 4578999
Q ss_pred EEccCCCeEEEEeccCCC------ceEEEEECC
Q 005140 519 FWSPSGRFIVLAGLKGFN------GQLEFYNVD 545 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~d------g~v~iwd~~ 545 (712)
+|+|...+||.++....+ |.|++|-+.
T Consensus 279 AWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 279 AWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999999998865433 677777654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=227.62 Aligned_cols=303 Identities=19% Similarity=0.256 Sum_probs=238.8
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEc
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s 272 (712)
.|-. .......+.+|..+|+.+-|+|+-..+|+++.++ |++||.. +++....+ |...|.+|+|+..|++||+++
T Consensus 93 ~wip--Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 93 LWIP--RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred hcCC--CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEecCccEEEecC
Confidence 4544 3334456778999999999999999999999998 8899999 77765544 444599999999999999999
Q ss_pred CCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 273 SHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
.| -.+++||..+ -++++.+.+|...+. ++.|-| .|.+|++++ |++|+.|++.++
T Consensus 170 sD----------l~~~LWd~~~~~~c~ks~~gh~h~vS-------------~V~f~P-~gd~ilS~srD~tik~We~~tg 225 (406)
T KOG0295|consen 170 SD----------LSAKLWDFDTFFRCIKSLIGHEHGVS-------------SVFFLP-LGDHILSCSRDNTIKAWECDTG 225 (406)
T ss_pred Cc----------cchhheeHHHHHHHHHHhcCccccee-------------eEEEEe-cCCeeeecccccceeEEecccc
Confidence 99 6799999876 467888888877664 789999 999999999 999999999999
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
-.+.....|.+-|..+..+.||.++|+ ++.++.+++|......-+ .++. +....-.++|.|...+-.+
T Consensus 226 ~cv~t~~~h~ewvr~v~v~~DGti~As-----~s~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i--- 294 (406)
T KOG0295|consen 226 YCVKTFPGHSEWVRMVRVNQDGTIIAS-----CSNDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSI--- 294 (406)
T ss_pred eeEEeccCchHhEEEEEecCCeeEEEe-----cCCCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcch---
Confidence 988888888888999999999999999 888888888776543221 1111 1112222344443321000
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
.. - +.+. ..++++.+++.|+ +|++||+.++. .+.+
T Consensus 295 ---------------~~------------a-t~~~--------~~~~~l~s~SrDk---tIk~wdv~tg~------cL~t 329 (406)
T KOG0295|consen 295 ---------------SE------------A-TGST--------NGGQVLGSGSRDK---TIKIWDVSTGM------CLFT 329 (406)
T ss_pred ---------------hh------------c-cCCC--------CCccEEEeecccc---eEEEEeccCCe------EEEE
Confidence 00 0 0000 0356888999999 99999998765 7777
Q ss_pred eCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEE
Q 005140 510 LKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFN 585 (712)
Q Consensus 510 ~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~ 585 (712)
+.+| .|..++|+|.|+||+++.. |++|++||+++++++.+ .|..-++++.|..+-.|+++|+- |..++
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV-----dqt~K 401 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV-----DQTVK 401 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEec---CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc-----cceee
Confidence 7766 6999999999999999998 99999999999999886 56688999999999999999999 99999
Q ss_pred EEEe
Q 005140 586 IWSF 589 (712)
Q Consensus 586 iw~~ 589 (712)
+|..
T Consensus 402 vwEc 405 (406)
T KOG0295|consen 402 VWEC 405 (406)
T ss_pred eeec
Confidence 9963
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=254.78 Aligned_cols=266 Identities=13% Similarity=0.261 Sum_probs=216.3
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
...++|..||+|++.||.|..+. |++|.+. .. .+..+.+.. +...+=+.+.| ..+.+.|
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~-p~-kl~~lk~~~--------~l~~~d~~sad----------~~~~~~D 437 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLT-PK-KLKKLKDAS--------DLSNIDTESAD----------VDVDMLD 437 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecc-hh-hhccccchh--------hhccccccccc----------hhhhhcc
Confidence 35688999999999999999888 8899987 32 333332221 01112233344 3355666
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECC
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP 370 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 370 (712)
-.++...+++.+|.+++. .++|+| +.++|++++ |+++++|.+.+...+-....|..+|.++.|+|
T Consensus 438 ~~~~~~~~~L~GH~GPVy-------------g~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVY-------------GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred ccCCceeEEeecCCCcee-------------eeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 666667778889988873 589999 999999999 99999999999988877789999999999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
-|-++|+ ++.|+++++|..+.... +
T Consensus 504 ~GyYFat-----as~D~tArLWs~d~~~P------------------------------------------l-------- 528 (707)
T KOG0263|consen 504 RGYYFAT-----ASHDQTARLWSTDHNKP------------------------------------------L-------- 528 (707)
T ss_pred CceEEEe-----cCCCceeeeeecccCCc------------------------------------------h--------
Confidence 9999999 88999998875442100 0
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 528 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~ 528 (712)
..+.+|...|.|+.|+|++.|+++|+.|. +|++||+.++. .++.+.+| +|.+++|||+|++|+
T Consensus 529 ------RifaghlsDV~cv~FHPNs~Y~aTGSsD~---tVRlWDv~~G~------~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 529 ------RIFAGHLSDVDCVSFHPNSNYVATGSSDR---TVRLWDVSTGN------SVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred ------hhhcccccccceEEECCcccccccCCCCc---eEEEEEcCCCc------EEEEecCCCCceEEEEEcCCCceEe
Confidence 11337899999999999999999999999 99999998876 45555555 899999999999999
Q ss_pred EEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 529 LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|+. ||.|.+||+.++.++.. .|.+.+.++.||.+|..||+++. |++|++||+.
T Consensus 594 Sg~e---d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~-----DnsV~lWD~~ 649 (707)
T KOG0263|consen 594 SGDE---DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA-----DNSVRLWDLT 649 (707)
T ss_pred eccc---CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC-----CCeEEEEEch
Confidence 9998 99999999999888775 67899999999999999999999 9999999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=225.84 Aligned_cols=307 Identities=15% Similarity=0.246 Sum_probs=245.7
Q ss_pred CCCCCCCCCCCCCCCCc---cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEE
Q 005140 154 VPDEWAPPEHKPYTPGE---NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLAT 230 (712)
Q Consensus 154 ~~~~~~~p~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat 230 (712)
.|..|.|++..++.... .+...+++|. ....++.+.+.++.+|+. ..++.+..+++|...+..++|+..|++||+
T Consensus 90 ~~~~wipRp~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 90 TPALWIPRPNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASGKYLAT 167 (406)
T ss_pred ChhhcCCCCCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCccEEEe
Confidence 56678887766654333 2334455553 234455556899999999 677778999999999999999999999999
Q ss_pred EecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcc
Q 005140 231 VHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE 307 (712)
Q Consensus 231 ~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~ 307 (712)
++.|- +.+||..+.+.++.... |. .|.++.|-|.|.+|++++.| .+|+.|++.+|-++.+|.+|..-
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD----------~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD----------NTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc----------cceeEEecccceeEEeccCchHh
Confidence 99998 88999984455554442 33 49999999999999999999 89999999999999999999886
Q ss_pred cccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 308 FAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
+. .++.+. ||.++|+++ |.+|++|-+.++........|.-.|.+++|.|...+=.+ .+
T Consensus 238 vr-------------~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i-------~~ 296 (406)
T KOG0295|consen 238 VR-------------MVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI-------SE 296 (406)
T ss_pred EE-------------EEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch-------hh
Confidence 53 688888 999999999 999999999988766666678888999999997542221 00
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
.... ...|.++.+++.|.+ +++|++... ...+++.+|...|
T Consensus 297 at~~---------------------------~~~~~~l~s~SrDkt---------Ik~wdv~tg---~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 297 ATGS---------------------------TNGGQVLGSGSRDKT---------IKIWDVSTG---MCLFTLVGHDNWV 337 (406)
T ss_pred ccCC---------------------------CCCccEEEeecccce---------EEEEeccCC---eEEEEEeccccee
Confidence 0000 124568888888887 889998754 4567888999999
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
..++|+|.|+||+++..|+ +|++||+++++ ..+++. .+-++++.|..+-.++++|+. |..+++|..
T Consensus 338 r~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~------cmk~~~ah~hfvt~lDfh~~~p~VvTGsV---dqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDK---TLRVWDLKNLQ------CMKTLEAHEHFVTSLDFHKTAPYVVTGSV---DQTVKVWEC 405 (406)
T ss_pred eeeEEcCCCeEEEEEecCC---cEEEEEeccce------eeeccCCCcceeEEEecCCCCceEEeccc---cceeeeeec
Confidence 9999999999999999999 99999997654 444444 556899999999999999998 999999964
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=235.59 Aligned_cols=279 Identities=20% Similarity=0.365 Sum_probs=221.9
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
..+++|...|++++|+|+|++|++++.++ +.+|+.. +......+ .| ..+..+.|+|++++|++++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------- 72 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAASADGTYLASGSSD--------- 72 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-CCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---------
Confidence 45678999999999999999999999888 8899998 55544444 23 348899999999999999998
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccC
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
+.|++|++.+++.+..+..+...+. ++.|++ +++++++++ ++.|.+|++.+++.......+...
T Consensus 73 -~~i~i~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 73 -KTIRLWDLETGECVRTLTGHTSYVS-------------SVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred -CeEEEEEcCcccceEEEeccCCcEE-------------EEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999998888888887765542 689999 999999999 999999999977766555556667
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.+++|+|++.++++ ++.++.+.+ |+....+
T Consensus 138 i~~~~~~~~~~~l~~-----~~~~~~i~i--~d~~~~~------------------------------------------ 168 (289)
T cd00200 138 VNSVAFSPDGTFVAS-----SSQDGTIKL--WDLRTGK------------------------------------------ 168 (289)
T ss_pred EEEEEEcCcCCEEEE-----EcCCCcEEE--EEccccc------------------------------------------
Confidence 999999999888876 333444443 3322110
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFW 520 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~ 520 (712)
. ...+..|...+.+++|+|+++.+++++.++ .|++|++..+. .+..+. ...+.++.|
T Consensus 169 ----------~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~------~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 169 ----------C--VATLTGHTGEVNSVAFSPDGEKLLSSSSDG---TIKLWDLSTGK------CLGTLRGHENGVNSVAF 227 (289)
T ss_pred ----------c--ceeEecCccccceEEECCCcCEEEEecCCC---cEEEEECCCCc------eecchhhcCCceEEEEE
Confidence 0 011224567899999999999999999888 89999997643 344442 337899999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+|++.++++++. +|.|++|++.+++.+.. .+...+.+++|+|++++|++++. |+.+++|+
T Consensus 228 ~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSE---DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA-----DGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcC---CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC-----CCeEEecC
Confidence 999999998886 89999999997766654 45578999999999999999999 99999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=233.08 Aligned_cols=272 Identities=17% Similarity=0.306 Sum_probs=221.1
Q ss_pred CCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecC-CC
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH-PQ 255 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~-~~ 255 (712)
.|.||-. ++++..|-.-+||. .....+..++.|...|+++.||++|.++++|+.+| |++|+..-+...+...+| ..
T Consensus 105 tPeGRRL-ltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ea 182 (464)
T KOG0284|consen 105 TPEGRRL-LTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEA 182 (464)
T ss_pred cCCCcee-EeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhh
Confidence 4567744 55555666669999 56777778899999999999999999999999999 889998723333334456 56
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
|++++|||+...+++++.| ++|+|||....+..+.+.+|.-.+. ++.|.| .-.+||
T Consensus 183 IRdlafSpnDskF~t~SdD----------g~ikiWdf~~~kee~vL~GHgwdVk-------------svdWHP-~kgLia 238 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDD----------GTIKIWDFRMPKEERVLRGHGWDVK-------------SVDWHP-TKGLIA 238 (464)
T ss_pred hheeccCCCCceeEEecCC----------CeEEEEeccCCchhheeccCCCCcc-------------eeccCC-ccceeE
Confidence 9999999999999999999 9999999998888888999887764 799999 989999
Q ss_pred Eec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 336 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
+++ |+.|++||..++..+.....|...|..+.|+|++++|++ +|.|..++++ |+...+.+.....+.....+
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt-----~skD~~~kv~--DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT-----GSKDQSCKVF--DIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE-----ccCCceEEEE--ehhHhHHHHHhhcchhhhee
Confidence 999 999999999999999888888889999999999999999 8888876654 55566666666666777778
Q ss_pred EEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 415 MYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 415 ~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
+.|+|-.. .|.++..++. +..|.+.. ..|+..+.. +|...|.+++|+|-|..||+++.|. ++++|
T Consensus 312 ~~WhP~~~~lftsgg~Dgs---------vvh~~v~~-~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~---t~rfw 377 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGS---------VVHWVVGL-EEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDR---TVRFW 377 (464)
T ss_pred eccccccccceeeccCCCc---------eEEEeccc-cccccCCCc-ccccceeeeeccccceeEeecCCCc---ceeee
Confidence 89999765 4555666665 66777652 123222333 8999999999999999999999999 99999
Q ss_pred Eee
Q 005140 494 SMR 496 (712)
Q Consensus 494 d~~ 496 (712)
.-.
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=222.65 Aligned_cols=323 Identities=13% Similarity=0.160 Sum_probs=233.1
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCce-EEeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQGA-AVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i-~iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....|..|..+|.+++.+|+.+++|||+.|.. .||+.. ++.....+ .|. .|.++.||.||.|||||..+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~-~ge~~~eltgHKDSVt~~~FshdgtlLATGdms------ 127 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS-TGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS------ 127 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc-CCcceeEecCCCCceEEEEEccCceEEEecCCC------
Confidence 345678999999999999999999999999985 599999 66665555 355 49999999999999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|+||...+|.....+...-. .+.| +.|.| .+.+|+.++ ||.+.+|.+++.........|
T Consensus 128 ----G~v~v~~~stg~~~~~~~~e~~-----------dieW--l~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 128 ----GKVLVFKVSTGGEQWKLDQEVE-----------DIEW--LKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred ----ccEEEEEcccCceEEEeecccC-----------ceEE--EEecc-cccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 9999999999998888763322 2346 79999 999999999 999999999987666666778
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
..++++=.|.|+|+.+++ +..++.+++| +..+.+++...+
T Consensus 190 ~~~ct~G~f~pdGKr~~t-----gy~dgti~~W--n~ktg~p~~~~~--------------------------------- 229 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILT-----GYDDGTIIVW--NPKTGQPLHKIT--------------------------------- 229 (399)
T ss_pred CCCcccccccCCCceEEE-----EecCceEEEE--ecCCCceeEEec---------------------------------
Confidence 888899999999999988 5566665544 333332221111
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC----ceeEEEEeCCCc-
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG----RVSKLTTLKGKQ- 514 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~----~~~~~~~~~~~~- 514 (712)
.. -.....++.++..+..+..++.++ .+++-+..+++... ....+..-..+.
T Consensus 230 ---------~~-----------e~~~~~~~~~~~~~~~~~~g~~e~---~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 230 ---------QA-----------EGLELPCISLNLAGSTLTKGNSEG---VACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred ---------cc-----------ccCcCCccccccccceeEeccCCc---cEEEEccccceEEEecCCCCccccccchhhh
Confidence 00 011222344444444444444444 33333332221000 000011111122
Q ss_pred --eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-
Q 005140 515 --ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN- 590 (712)
Q Consensus 515 --v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~- 590 (712)
+-.+.||..=...|+|+. ||+|.|||+...++... .|...|+.+.|-+ ..||++++. ++.|++||..
T Consensus 287 esve~~~~ss~lpL~A~G~v---dG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~-----~g~v~~wDaRt 357 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSV---DGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA-----NGKVRQWDART 357 (399)
T ss_pred hhhhhcccccccchhhcccc---cceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc-----CceEEeeeccc
Confidence 344555555667777777 99999999998777665 4557899999999 789999999 9999999975
Q ss_pred Cceeeee--cccceeeeEEecCCCCCCChhhHHHH
Q 005140 591 GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 591 g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
|+++... |...|..++.+|+.+.++|.|.|.+.
T Consensus 358 G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 358 GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred cceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 7776654 77899999999999999999988653
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=249.56 Aligned_cols=281 Identities=16% Similarity=0.307 Sum_probs=226.0
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
.|.+.+.|+.|||+|++|++++.++ +++|+.. ... .+..+ +...|.+++|||+|++|++++.| +
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~-~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D----------~ 225 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLE-GIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD----------K 225 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecc-cccchhhccccccccceeeeEECCCCcEEEEecCC----------c
Confidence 3478999999999999999999999 7799996 444 44443 44469999999999999999999 9
Q ss_pred EEEEEEc-cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCe
Q 005140 286 VINIFDV-RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 286 ~I~iwd~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
+|+|||+ ..+..++++.+|...+. +++|+| +|+++++++ |++|+||++.+++++.....|.++|
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~-------------~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVT-------------SVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceE-------------EEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 9999999 56689999999988874 799999 999999999 9999999999999998899999999
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|++++++|++ ++.|+.++||... +.... +.
T Consensus 292 s~~~f~~d~~~l~s-----~s~d~~i~vwd~~--~~~~~----------------------~~----------------- 325 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVS-----ASYDGTIRVWDLE--TGSKL----------------------CL----------------- 325 (456)
T ss_pred EEEEECCCCCEEEE-----cCCCccEEEEECC--CCcee----------------------ee-----------------
Confidence 99999999999998 6666666655432 21100 00
Q ss_pred EEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-----cee
Q 005140 444 LFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-----QAN 516 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~ 516 (712)
..+.++.. ++++++|+|++.++++++.|+ .+++|++..+. .+....++ .+.
T Consensus 326 -------------~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~---~~~~w~l~~~~------~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 326 -------------KLLSGAENSAPVTSVQFSPNGKYLLSASLDR---TLKLWDLRSGK------SVGTYTGHSNLVRCIF 383 (456)
T ss_pred -------------ecccCCCCCCceeEEEECCCCcEEEEecCCC---eEEEEEccCCc------ceeeecccCCcceeEe
Confidence 00111121 689999999999999999999 99999997654 23333322 233
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
....++.|+++++++. |+.|++|++.++..+.. .| ...+..+.|+|...++++++. ..|+.+++|...
T Consensus 384 ~~~~~~~~~~i~sg~~---d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~---~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSE---DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF---EGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeC---CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc---CCCceEEEecCC
Confidence 4555889999999998 99999999998776654 56 678889999999999999994 118999999865
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=260.10 Aligned_cols=285 Identities=9% Similarity=0.159 Sum_probs=212.0
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccC---cc----eeeee-cCCCeeEEEecCC-CCEEEEEcCCCCCC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT---FN----RLMRY-AHPQVKLIDFSPG-EKYLVTYSSHEPSN 278 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~---~~----~~~~~-~~~~v~~i~~Spd-g~~l~t~s~d~~~~ 278 (712)
+..|...|++++|+|+|++||+++.++ |+||+.... .. ....+ ++..+.+++|+|. +.+|++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D---- 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE---- 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC----
Confidence 456889999999999999999999999 889997511 11 12222 3445899999874 7899999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
++|+|||+.+++.+..+.+|...+. +++|+|.++.+|++++ |+.|++||+.++..+....
T Consensus 555 ------g~v~lWd~~~~~~~~~~~~H~~~V~-------------~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 555 ------GVVQVWDVARSQLVTEMKEHEKRVW-------------SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred ------CeEEEEECCCCeEEEEecCCCCCEE-------------EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999999999999999999987763 6999852678999999 9999999998776554332
Q ss_pred ccccCeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 358 LKVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 358 ~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
. ...+.++.|+ +++.+|++ |+.++.+
T Consensus 616 ~-~~~v~~v~~~~~~g~~lat-----gs~dg~I----------------------------------------------- 642 (793)
T PLN00181 616 T-KANICCVQFPSESGRSLAF-----GSADHKV----------------------------------------------- 642 (793)
T ss_pred c-CCCeEEEEEeCCCCCEEEE-----EeCCCeE-----------------------------------------------
Confidence 2 2346666663 34566665 4444433
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--c
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--Q 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~ 514 (712)
.+|+++....+. ..+.+|...|.+++|. ++.+|++++.|+ .|++||+..........++..+.+| .
T Consensus 643 ------~iwD~~~~~~~~--~~~~~h~~~V~~v~f~-~~~~lvs~s~D~---~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 643 ------YYYDLRNPKLPL--CTMIGHSKTVSYVRFV-DSSTLVSSSTDN---TLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred ------EEEECCCCCccc--eEecCCCCCEEEEEEe-CCCEEEEEECCC---EEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 333333221111 2344788999999997 788999999999 9999999753211122356666655 5
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee---------------eccccceeeEEECCCCCEEEEEEcccee
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---------------TAEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---------------~~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
++.++|+|+|.+|++++. |+.|++|+......+. ..+...|.+++|+|+|.+|++++.
T Consensus 711 i~~v~~s~~~~~lasgs~---D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~---- 783 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSE---TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS---- 783 (793)
T ss_pred eeEEEEcCCCCEEEEEeC---CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC----
Confidence 788999999999999998 9999999976443221 112346899999999999999999
Q ss_pred ccccEEEEEe
Q 005140 580 MENGFNIWSF 589 (712)
Q Consensus 580 ~d~~v~iw~~ 589 (712)
+|.|+||++
T Consensus 784 -dG~I~i~~~ 792 (793)
T PLN00181 784 -TGNIKILEM 792 (793)
T ss_pred -CCcEEEEec
Confidence 999999985
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=211.01 Aligned_cols=399 Identities=13% Similarity=0.198 Sum_probs=279.4
Q ss_pred hhccCCCCCce----E------EEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC---------
Q 005140 174 KWLTDEKARDQ----F------VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ--------- 234 (712)
Q Consensus 174 ~~~~~~~~~~~----~------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~--------- 234 (712)
.|++..+|++. | ++.+.-.+.+++|. .....+.+.+|...|.|++.+||--.+|+|-..
T Consensus 57 ewvygYRG~dcR~Nly~lptgE~vyfvA~V~Vl~n~--ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~p 134 (626)
T KOG2106|consen 57 EWVYGYRGVDCRNNLYLLPTGELVYFVAAVGVLYNW--EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQP 134 (626)
T ss_pred EEEEeecceeeeceeEEccCccEEEEeccEEEEEee--hhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCC
Confidence 57777776653 2 23444566777777 344556789999999999999999888876422
Q ss_pred ceEEeecccCcceeeee--cCCCeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 235 GAAVWGGANTFNRLMRY--AHPQVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~--~~~~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
.++|||.. +...+..+ .+.+|.+++||+- |.+|+..... +...+.|||-..+..+...+.....+.
T Consensus 135 hvriWdsv-~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s--------~~h~lSVWdWqk~~~~~~vk~sne~v~- 204 (626)
T KOG2106|consen 135 HVRIWDSV-TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS--------NPHMLSVWDWQKKAKLGPVKTSNEVVF- 204 (626)
T ss_pred eeeecccc-cceeeeeeccccccceeeeecccCCCceEEEecCC--------CccccchhhchhhhccCcceeccceEE-
Confidence 27899977 66655554 4667999999984 5666655433 226789999988877766665555442
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
...|.|.+.+++++++.+.+.+|+...+.+..+.-+ ...-|.+++|.++|..+. +|
T Consensus 205 ------------~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT--------gD 264 (626)
T KOG2106|consen 205 ------------LATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT--------GD 264 (626)
T ss_pred ------------EEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe--------ec
Confidence 578999555688888899999999887765543211 113499999999998765 56
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc-------------ccccEE--------EE
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS-------------TYTGFE--------LF 445 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~-------------~~~~~~--------l~ 445 (712)
..+.|.+|+....+..++...+......+.--.+|..|- +..|.....|. .++.++ ++
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 667777887766555555446666666666666776654 44333211111 011110 00
Q ss_pred -------EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEE
Q 005140 446 -------RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 518 (712)
Q Consensus 446 -------~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l 518 (712)
.+...-...-.+...+|......++.+|+...|++++.|+ .+++|+- .+. ....+-..++.++
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk---~v~lW~~--~k~-----~wt~~~~d~~~~~ 413 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK---HVRLWND--HKL-----EWTKIIEDPAECA 413 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc---eEEEccC--Cce-----eEEEEecCceeEe
Confidence 0000000011233447888899999999999999999999 9999992 111 2233335688999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec--Cceee
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN--GKLLY 595 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~--g~~~~ 595 (712)
.|+|.| .+++|.. .|...+.|.++..++.. ....+++.+.|+|+|.+||.++. |+.|+||.++ |+.+.
T Consensus 414 ~fhpsg-~va~Gt~---~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-----d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTA---TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-----DNHIYIYRVSANGRKYS 484 (626)
T ss_pred eccCcc-eEEEeec---cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC-----CCeEEEEEECCCCcEEE
Confidence 999999 8888888 99999999998665543 23688999999999999999999 9999999886 55444
Q ss_pred ee---cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 596 RT---LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 596 ~~---~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+. +...|+++.||+|+++|.+.+.|-+|-
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEIL 516 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEEE
Confidence 32 448899999999999999988776553
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=213.05 Aligned_cols=190 Identities=48% Similarity=0.899 Sum_probs=166.0
Q ss_pred eeeeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
+++.+..+.+.|+++|.+|++.+. +..++++++|+...||.++..+.+...+.+. +.++|.+++|+|+|+.||++.+.
T Consensus 2 ~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 2 NFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred CccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEcc
Confidence 567888899999999999999887 4567889999999999999998888888873 35679999999999999988775
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEEC
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWD 564 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~s 564 (712)
.+. .|.|||++ ...+..+....++.+.|||+|++|++++.++..|.|.|||.++.+.+.+.++..++.++||
T Consensus 81 ~~~-~v~lyd~~-------~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~Ws 152 (194)
T PF08662_consen 81 MPA-KVTLYDVK-------GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWS 152 (194)
T ss_pred CCc-ccEEEcCc-------ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEc
Confidence 444 89999995 2367788777899999999999999999877789999999999999999888889999999
Q ss_pred CCCCEEEEEEcc-ceeccccEEEEEecCceeeeecccceee
Q 005140 565 PTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQ 604 (712)
Q Consensus 565 pdg~~l~t~s~~-~~~~d~~v~iw~~~g~~~~~~~~~~i~~ 604 (712)
|||++|++++.. ++++|++++||++.|+++.+...+++++
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~ 193 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQ 193 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEecCeEeEecchhhhhC
Confidence 999999999987 7888999999999999998877666554
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=227.42 Aligned_cols=390 Identities=13% Similarity=0.167 Sum_probs=285.8
Q ss_pred hhccCCCCCc-eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee
Q 005140 174 KWLTDEKARD-QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
.-+.+|..+- ..++++..+...+||. +.++.+..|+++...|+++.=||-=..+|.|..+| |.|+++. ..+.+..|
T Consensus 163 tal~HP~TYLNKIvvGs~~G~lql~Nv-rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sF 240 (910)
T KOG1539|consen 163 TALLHPSTYLNKIVVGSSQGRLQLWNV-RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSF 240 (910)
T ss_pred eeEecchhheeeEEEeecCCcEEEEEe-ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEE
Confidence 3456666553 4567788888999999 78999999999999999999999999999999999 8899999 89999999
Q ss_pred cCC--CeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEec
Q 005140 252 AHP--QVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 252 ~~~--~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
.|+ .|++++|..||..+ |+++.. |.+.+||+...+.+..+. .|.+.+ . ...|-
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~----------G~m~~wDLe~kkl~~v~~nah~~sv--------~-----~~~fl 297 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSN----------GDMAFWDLEKKKLINVTRNAHYGSV--------T-----GATFL 297 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCC----------ceEEEEEcCCCeeeeeeeccccCCc--------c-----cceec
Confidence 886 39999999999865 455555 899999998777766665 443333 2 35667
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCce----ecccccccccCeeeEEEC-CCCCeEEEEeecCCCCCC--------------
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFT----LIDKKSLKVENVMDFSWS-PTDPIISLFVPELGGGNQ-------------- 387 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~-------------- 387 (712)
| ....+++.+ |+.+++|-.+++. ++.....|..+..++.|. .+|.++.. ++.|.
T Consensus 298 ~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils-----a~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 298 P-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS-----AKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred C-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe-----cccCcchhhhhhhHHHHhH
Confidence 7 777888877 8888887655332 333444555555555554 33444433 22222
Q ss_pred ---------------------------------------------------CeEEEEEecCCc-c-ceeee--eeeeecc
Q 005140 388 ---------------------------------------------------PARVSLVQIPSK-E-ELRQK--NLFSVSD 412 (712)
Q Consensus 388 ---------------------------------------------------~~~i~~~~~~~~-~-~~~~~--~~~~~~~ 412 (712)
.++.|.|...+. + .+... +......
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 122222221111 1 00000 0022334
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.+++.++.|++.+.+...+. +.+|++...-.....-.-+.|.++|+.++...-++.+++++.+| .+.+
T Consensus 452 ~av~vs~CGNF~~IG~S~G~---------Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G---ilkf 519 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGT---------IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG---ILKF 519 (910)
T ss_pred EEEEEeccCceEEEeccCCe---------EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc---eEEE
Confidence 45566788888888777766 78888765322111111257999999999988889999999999 9999
Q ss_pred EEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCE
Q 005140 493 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRY 569 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~ 569 (712)
|+..... ++..+. +..+.++..+.....++++.. +-.|.++|..+.+++.. +|...+++++|||||+|
T Consensus 520 w~f~~k~------l~~~l~l~~~~~~iv~hr~s~l~a~~~d---df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 520 WDFKKKV------LKKSLRLGSSITGIVYHRVSDLLAIALD---DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred EecCCcc------eeeeeccCCCcceeeeeehhhhhhhhcC---ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 9996543 555655 557888888888888888887 89999999998888765 78899999999999999
Q ss_pred EEEEEccceeccccEEEEEec-Cceeeeecc-cceeeeEEecCCCCCCChhhH
Q 005140 570 VATAVTSVHEMENGFNIWSFN-GKLLYRTLK-DHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~-~~i~~~~w~p~~~~l~s~~~d 620 (712)
|++++. |++|++||+- |.++...+. .....+.++|+|.+|+|...|
T Consensus 591 lisasm-----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 591 LISASM-----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred EEEeec-----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 999999 9999999986 666665544 678899999999999998766
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=219.80 Aligned_cols=274 Identities=16% Similarity=0.291 Sum_probs=209.4
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
|...|..+.||++|+|||+++.| .+..+|.+.... ..+++.+|...+. .+.|||
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD----------~Taiiw~v~~d~~~kl~~tlvgh~~~V~-------------yi~wSP 279 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKD----------STAIIWIVVYDVHFKLKKTLVGHSQPVS-------------YIMWSP 279 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCC----------ceEEEEEEecCcceeeeeeeecccCceE-------------EEEECC
Confidence 34459999999999999999999 899999875443 4778888888774 699999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
|++|+++++ +..+.+||+.+|........ +.-.+.+.+|.|||..+++ |+.|..+.
T Consensus 280 -DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-----Gs~dr~i~---------------- 337 (519)
T KOG0293|consen 280 -DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-----GSPDRTII---------------- 337 (519)
T ss_pred -CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-----cCCCCcEE----------------
Confidence 999999999 88899999999987654432 2345889999999999988 66664433
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
.|..||+.+- -|.-. ....|.+++.++||+++++...|.
T Consensus 338 ---------~wdlDgn~~~------------------~W~gv-------------r~~~v~dlait~Dgk~vl~v~~d~- 376 (519)
T KOG0293|consen 338 ---------MWDLDGNILG------------------NWEGV-------------RDPKVHDLAITYDGKYVLLVTVDK- 376 (519)
T ss_pred ---------EecCCcchhh------------------ccccc-------------ccceeEEEEEcCCCcEEEEEeccc-
Confidence 3455554421 11100 034688899999999999999988
Q ss_pred CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccc--cceeeEE
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEH--FMATDVE 562 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~--~~v~~~~ 562 (712)
.+++|+..+.... .+. -..+++++++.|.||+++++.-. +..+.+||+...+++.. +|. ..+..-+
T Consensus 377 --~i~l~~~e~~~dr----~li-se~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 377 --KIRLYNREARVDR----GLI-SEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred --ceeeechhhhhhh----ccc-cccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 8999998764321 111 12468999999999999998877 89999999997776654 332 2333445
Q ss_pred ECC-CCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCC-CCCCChhhHHHHHHH
Q 005140 563 WDP-TGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRP-PSFLTPEKEEEIAKN 626 (712)
Q Consensus 563 ~sp-dg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~-~~l~s~~~d~~i~~~ 626 (712)
|-- +..++++|+. |+.|+||+.. |.++... |...+++++|+|.. .+++|+++|++||-|
T Consensus 447 Fgg~~~~fiaSGSE-----D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 447 FGGGNDKFIASGSE-----DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred cCCCCcceEEecCC-----CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 544 4579999999 9999999965 7776655 77899999999965 588899999999854
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-24 Score=224.42 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=215.2
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-c
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A 252 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~ 252 (712)
.-++| .|.-.+++-..+++-+|+. .-+..+..|..|.++|+.++|+|++.++++|+.|- |+||+.. +.+++.++ .
T Consensus 15 lsFHP-~rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclftL~G 91 (1202)
T KOG0292|consen 15 LSFHP-KRPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLFTLLG 91 (1202)
T ss_pred eecCC-CCCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehhhhcc
Confidence 33444 3445566777888899999 66777889999999999999999999999999998 8899999 77777776 4
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|-+ |+.+.|++.-.+|+++|.| .+|+||+..+++++..+++|..-+. |-+|.| ..
T Consensus 92 HlDYVRt~~FHheyPWIlSASDD----------QTIrIWNwqsr~~iavltGHnHYVM-------------cAqFhp-tE 147 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDD----------QTIRIWNWQSRKCIAVLTGHNHYVM-------------CAQFHP-TE 147 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCC----------CeEEEEeccCCceEEEEecCceEEE-------------eeccCC-cc
Confidence 555 9999999999999999999 9999999999999999999998774 679999 99
Q ss_pred CEEEEec-CCeEEEEEcCCcee---------------------c--------ccccccccCeeeEEECCCCCeEEEEeec
Q 005140 332 KYFAKLG-KNMISVYETESFTL---------------------I--------DKKSLKVENVMDFSWSPTDPIISLFVPE 381 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~---------------------~--------~~~~~~~~~v~~~~~sp~~~~la~~~~~ 381 (712)
..+++++ |.+|+|||+...+. . .....|..+|+-++|+|.-..|++
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS---- 223 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS---- 223 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe----
Confidence 9999999 99999999863210 0 011235567999999999999999
Q ss_pred CCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005140 382 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 461 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 461 (712)
|+.|..+++|.|+-..--.+..-..+..+..++-|+|....+++.+.|++ +++|++.....- .++..
T Consensus 224 -G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks---------irVwDm~kRt~v---~tfrr 290 (1202)
T KOG0292|consen 224 -GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS---------IRVWDMTKRTSV---QTFRR 290 (1202)
T ss_pred -cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc---------EEEEecccccce---eeeec
Confidence 99999999999987654444443444455556678999999999999988 899998765332 22323
Q ss_pred CCCceEEEEEeeCCCEEEEEEcCC
Q 005140 462 KNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 462 h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
-++..+.++-+|..+.||+++..|
T Consensus 291 endRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCCc
Confidence 367888889999999888887655
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=199.41 Aligned_cols=282 Identities=16% Similarity=0.250 Sum_probs=225.7
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCcee-cccc---cccccCeeeEEECC
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTL-IDKK---SLKVENVMDFSWSP 370 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~-~~~~---~~~~~~v~~~~~sp 370 (712)
.++.+.+|.+.+ | .++|+| . |..||+++ |+.|++|+...+.. ..+. ..|...|.+++|+|
T Consensus 6 ~~~~~~gh~~r~------------W-~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 6 LEQKLSGHKDRV------------W-SVAWHP-GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred eEEeecCCCCcE------------E-EEEecc-CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC
Confidence 356677777765 7 599999 6 88999999 99999999884321 1111 13667799999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
.|++|++ ++-|.+..||.-.-...+.+.....+.....+++|+++|.+||+++.+.. +-+|.+.+.
T Consensus 72 ~g~~La~-----aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS---------VWiWe~ded 137 (312)
T KOG0645|consen 72 HGRYLAS-----ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS---------VWIWEIDED 137 (312)
T ss_pred CCcEEEE-----eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe---------EEEEEecCC
Confidence 9999999 88888888887666666777777777777778899999999999999987 788888865
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 528 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~ 528 (712)
+.-...--|.+|...|..+.|+|....|++++.|. +|++|.-.. ...+....++.++ .+.+++|+|.|..|+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCC---eEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 54444445789999999999999999999999999 999998753 2335677888776 689999999999999
Q ss_pred EEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-------eee---eec
Q 005140 529 LAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-------LLY---RTL 598 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-------~~~---~~~ 598 (712)
+++. |++++||-.. .-+...|...+..+.|. ...|++++. |+.|++|..... ++. ..|
T Consensus 212 s~sd---D~tv~Iw~~~--~~~~~~~sr~~Y~v~W~--~~~IaS~gg-----D~~i~lf~~s~~~d~p~~~l~~~~~~aH 279 (312)
T KOG0645|consen 212 SCSD---DGTVSIWRLY--TDLSGMHSRALYDVPWD--NGVIASGGG-----DDAIRLFKESDSPDEPSWNLLAKKEGAH 279 (312)
T ss_pred EecC---CcceEeeeec--cCcchhcccceEeeeec--ccceEeccC-----CCEEEEEEecCCCCCchHHHHHhhhccc
Confidence 9998 9999999755 22344566888999999 457999999 999999976531 222 236
Q ss_pred ccceeeeEEecC-CCCCCChhhHHHHH
Q 005140 599 KDHFFQFLWRPR-PPSFLTPEKEEEIA 624 (712)
Q Consensus 599 ~~~i~~~~w~p~-~~~l~s~~~d~~i~ 624 (712)
...|+++.|.|. +..|+++++|+.++
T Consensus 280 e~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 280 EVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred ccccceEEEcCCCCCceeecCCCceEE
Confidence 678999999995 67899999998875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=208.82 Aligned_cols=295 Identities=18% Similarity=0.278 Sum_probs=240.3
Q ss_pred eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 249 MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 249 ~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
...|..-|.|+++-|...++++|+.| ++|+|||+.+|++..++.+|...+. .+++|+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~D----------rtikIwDlatg~LkltltGhi~~vr-------------~vavS~ 203 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSAD----------RTIKIWDLATGQLKLTLTGHIETVR-------------GVAVSK 203 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCC----------ceeEEEEcccCeEEEeecchhheee-------------eeeecc
Confidence 33344459999999999999999999 9999999999999999999987763 589999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
-..|+.+++ |+.|+.||+...+.+.....|..+|.+++.+|.-..|++ ++.|..++||. +.++..+.....
T Consensus 204 -rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t-----~grDst~RvWD--iRtr~~V~~l~G 275 (460)
T KOG0285|consen 204 -RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVT-----GGRDSTIRVWD--IRTRASVHVLSG 275 (460)
T ss_pred -cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEe-----cCCcceEEEee--ecccceEEEecC
Confidence 889999999 999999999999999988899999999999999999999 77888777655 455555666666
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
+.....++.+.|-...+++++.|.+ +++|++..... ...+..|+..|.+++.+|.-..||+++.|.
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~t---------vrlWDl~agkt---~~tlt~hkksvral~lhP~e~~fASas~dn-- 341 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDST---------VRLWDLRAGKT---MITLTHHKKSVRALCLHPKENLFASASPDN-- 341 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCce---------EEEeeeccCce---eEeeecccceeeEEecCCchhhhhccCCcc--
Confidence 6777777888888888999999988 89999986543 356778999999999999999999988874
Q ss_pred CeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec----------cc
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----------EH 555 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----------~~ 555 (712)
++-|++..+. .+..+.++ .+++++.+.|| ++++|+. +|.+.+||..++-..+.. ..
T Consensus 342 --ik~w~~p~g~------f~~nlsgh~~iintl~~nsD~-v~~~G~d---ng~~~fwdwksg~nyQ~~~t~vqpGSl~sE 409 (460)
T KOG0285|consen 342 --IKQWKLPEGE------FLQNLSGHNAIINTLSVNSDG-VLVSGGD---NGSIMFWDWKSGHNYQRGQTIVQPGSLESE 409 (460)
T ss_pred --ceeccCCccc------hhhccccccceeeeeeeccCc-eEEEcCC---ceEEEEEecCcCcccccccccccCCccccc
Confidence 8999996655 34445544 57889998887 6667776 899999999876544321 22
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecC
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPR 610 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~ 610 (712)
..|.+.+|+..|..|++|.. |.+|++|.-+.......|. +.|.|.
T Consensus 410 agI~as~fDktg~rlit~ea-----dKtIk~~keDe~aT~EthP-----l~w~P~ 454 (460)
T KOG0285|consen 410 AGIFASCFDKTGSRLITGEA-----DKTIKMYKEDEHATEETHP-----LNWKPE 454 (460)
T ss_pred cceeEEeecccCceEEeccC-----CcceEEEecccccCcccCC-----cCCCCc
Confidence 56889999999999999999 9999999865433222221 677775
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=223.32 Aligned_cols=274 Identities=18% Similarity=0.331 Sum_probs=218.6
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcce--eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNR--LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~--~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+-+.|| ....||.+....|.+|+.. ++.. +..++...|+++.|+++|++|++|..+ |.|.|||.
T Consensus 179 Y~nlldWs-s~n~laValg~~vylW~~~-s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~----------g~v~iwD~ 246 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALGQSVYLWSAS-SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD----------GTVQIWDV 246 (484)
T ss_pred hhhHhhcc-cCCeEEEEecceEEEEecC-CCceEEeEecCCCceEEEEECCCCCEEEEeecC----------CeEEEEeh
Confidence 34568999 5568999999999999998 5553 344443459999999999999999999 99999999
Q ss_pred cCCceeeeccC-CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc-ccccccCeeeEEEC
Q 005140 293 RTGKVMRDFKG-SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVMDFSWS 369 (712)
Q Consensus 293 ~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s 369 (712)
.+.+.++.+.+ |...+. +++|.. ..+.+++ ++.|..+|+...+.... ...|...|..+.|+
T Consensus 247 ~~~k~~~~~~~~h~~rvg-------------~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 247 KEQKKTRTLRGSHASRVG-------------SLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred hhccccccccCCcCceeE-------------EEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 99999999998 655543 788964 6778888 99999999987664444 55677789999999
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+|+.++|. |+.|+.+.||... .
T Consensus 311 ~d~~~lAS-----GgnDN~~~Iwd~~--~--------------------------------------------------- 332 (484)
T KOG0305|consen 311 PDGNQLAS-----GGNDNVVFIWDGL--S--------------------------------------------------- 332 (484)
T ss_pred CCCCeecc-----CCCccceEeccCC--C---------------------------------------------------
Confidence 99999998 6667666655431 0
Q ss_pred CCcceeEEEecCCCCceEEEEEee-CCCEEEEEEc--CCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHG--DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR 525 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~--d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~ 525 (712)
+...+.+..|...|.+++|+| ....||+|++ |+ .|+||+..++. .+..+. +.+|..+.|++..+
T Consensus 333 ---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~---~i~fwn~~~g~------~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 333 ---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR---CIKFWNTNTGA------RIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred ---ccccEEEeccceeeeEeeeCCCccCceEEcCCCccc---EEEEEEcCCCc------EecccccCCceeeEEEcCCCC
Confidence 011144557899999999999 5667777766 55 99999998665 555555 55899999999998
Q ss_pred eEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 526 FIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
-|+++. |..++.|.||++.+.+.+.. +|...|.+++|||||.+|++++. |.++++|++-+.
T Consensus 401 Ei~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~-----DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA-----DETLRFWNLFDE 463 (484)
T ss_pred EEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc-----cCcEEeccccCC
Confidence 877764 44478999999998877764 78899999999999999999999 999999997653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-25 Score=196.14 Aligned_cols=282 Identities=16% Similarity=0.298 Sum_probs=207.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec--cCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
+...|.+++|+.+|.+|++++.+ +++.+|++..++.+..+ .+|...+. .++|+|.
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~d----------ktv~v~n~e~~r~~~~~~~~gh~~svd-------------ql~w~~~ 75 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFD----------KTVSVWNLERDRFRKELVYRGHTDSVD-------------QLCWDPK 75 (313)
T ss_pred hhhcceEEEEcccCceeeecccC----------CceEEEEecchhhhhhhcccCCCcchh-------------hheeCCC
Confidence 34459999999999999999999 99999999777554433 44554432 4677774
Q ss_pred CCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee
Q 005140 330 KDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 408 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (712)
....|++++ |.+|++||+..++.+.......+. ..+.|+|+|.++++ ++..-.|..++..+.+.+....+
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~-------~~kdD~it~id~r~~~~~~~~~~- 146 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAV-------GNKDDRITFIDARTYKIVNEEQF- 146 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEE-------ecCcccEEEEEecccceeehhcc-
Confidence 556777777 999999999998877655444443 45799999999998 44444566667666554443332
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
......+.|+.++..++.....+. +.|.....- . ....+.+|.....|+.|+|+|++||+|+.|.
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~---------v~ILsypsL-k--pv~si~AH~snCicI~f~p~GryfA~GsADA--- 211 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGC---------VEILSYPSL-K--PVQSIKAHPSNCICIEFDPDGRYFATGSADA--- 211 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCce---------EEEEecccc-c--cccccccCCcceEEEEECCCCceEeeccccc---
Confidence 222234578877776666555444 455544421 1 2345778999999999999999999999999
Q ss_pred eEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEEECC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDP 565 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~sp 565 (712)
.+.+||++..- .++.+. .-+|..++||.||++||+|+. |-.|-|-++.+|..+...+ .++...++|+|
T Consensus 212 lvSLWD~~ELi------C~R~isRldwpVRTlSFS~dg~~lASaSE---Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHP 282 (313)
T KOG1407|consen 212 LVSLWDVDELI------CERCISRLDWPVRTLSFSHDGRMLASASE---DHFIDIAEVETGDRVWEIPCEGPTFTVAWHP 282 (313)
T ss_pred eeeccChhHhh------hheeeccccCceEEEEeccCcceeeccCc---cceEEeEecccCCeEEEeeccCCceeEEecC
Confidence 89999996432 444444 338999999999999999998 9999999999999887744 47788999999
Q ss_pred CCCEEEEEEccc----eeccccEEEEEe
Q 005140 566 TGRYVATAVTSV----HEMENGFNIWSF 589 (712)
Q Consensus 566 dg~~l~t~s~~~----~~~d~~v~iw~~ 589 (712)
....||.+..+. .+-.++++||-+
T Consensus 283 k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 283 KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CCceeeEEecCCCCccccccceeEEecC
Confidence 999999998741 112256777654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=200.38 Aligned_cols=303 Identities=16% Similarity=0.181 Sum_probs=203.5
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee-eee-----cCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL-MRY-----AHPQVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~-~~~-----~~~~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
..+++|...|++++||.||++|||++.|+ |+||++. .+... .++ .-...+.+.|+||-+-++......
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g---- 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVR-DFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG---- 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecc-hhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC----
Confidence 46799999999999999999999999999 8899988 55421 111 222478899999987666554431
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
..+++|.+...+. ..+..|......-.-.....+..-.+-... +++||++++ |..|.+|++. |+++.....
T Consensus 155 -----~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 155 -----NKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred -----CEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 5799998632211 111111000000000000000000234445 788999999 9999999999 777655544
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
....-...+.||+|++|++ ++-.-.++||-. .|..+|.+-
T Consensus 227 nq~~n~~aavSP~GRFia~-----~gFTpDVkVwE~---------------------~f~kdG~fq-------------- 266 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAV-----SGFTPDVKVWEP---------------------IFTKDGTFQ-------------- 266 (420)
T ss_pred ccccccceeeCCCCcEEEE-----ecCCCCceEEEE---------------------EeccCcchh--------------
Confidence 4455677899999999998 555555555432 345555431
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc-CceeEEEEeC------
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA-GRVSKLTTLK------ 511 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~-~~~~~~~~~~------ 511 (712)
.....++|.+|...|..++|||++.++++.+.|| +++|||.+-.-.. ..-+.++..+
T Consensus 267 -------------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa 330 (420)
T KOG2096|consen 267 -------------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---KWRIWDTDVRYEAGQDPKILKEGSAPLHAA 330 (420)
T ss_pred -------------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---cEEEeeccceEecCCCchHhhcCCcchhhc
Confidence 0112256779999999999999999999999999 9999998521000 0011222221
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+..-.-+..||.|+.|+.+. ...|.+|..++++.... .|...|++++|+++|+|+++++. ..+++..
T Consensus 331 g~~p~RL~lsP~g~~lA~s~----gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd------r~vrv~~ 400 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSF----GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD------RYVRVIR 400 (420)
T ss_pred CCCceEEEeCCCCcEEEeec----CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc------eeeeeec
Confidence 11223699999999999876 57899999998776554 67899999999999999999986 5666654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=236.41 Aligned_cols=289 Identities=18% Similarity=0.301 Sum_probs=214.4
Q ss_pred CCCcccceEEEcCCCcEEEEEe--cCc-eEEeecccC-----------cceeeee-cCCC-eeEEEecCCCCEEEEEcCC
Q 005140 211 RSYWTESFVQWSPLGTYLATVH--RQG-AAVWGGANT-----------FNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~--~~~-i~iw~~~~~-----------~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d 274 (712)
++...|.+++.+|||..+|||+ .|+ ++||+.+.- .+.+++. .|.+ |.|+.|||||+|||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3445688999999999999999 666 779976510 1112222 2444 9999999999999999999
Q ss_pred CCCCCcCCCccEEEEEEccC------------------CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 275 EPSNPRDANRVVINIFDVRT------------------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
+.|.||.... .+.+..+.+|...+. .++|+| ++.+||+
T Consensus 91 ----------~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-------------Dv~Wsp-~~~~lvS 146 (942)
T KOG0973|consen 91 ----------RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-------------DVNWSP-DDSLLVS 146 (942)
T ss_pred ----------ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-------------eeccCC-CccEEEE
Confidence 8999998652 125667788877764 699999 9999999
Q ss_pred ec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeE
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 415 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 415 (712)
++ |++|.||+..++..+.....|..-|..+.|.|-|++||+ -+.|..++||...- .......+
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~AS-----qsdDrtikvwrt~d--w~i~k~It--------- 210 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFAS-----QSDDRTLKVWRTSD--WGIEKSIT--------- 210 (942)
T ss_pred ecccceEEEEccccceeeeeeecccccccceEECCccCeeee-----ecCCceEEEEEccc--ceeeEeec---------
Confidence 99 999999999999888888889999999999999999999 67888888776211 00000000
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEE
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYS 494 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d 494 (712)
.|.....+ ...+..+.|||||++|++... .++.+.+.|.+
T Consensus 211 ------------------------------------~pf~~~~~---~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 211 ------------------------------------KPFEESPL---TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ------------------------------------cchhhCCC---cceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 00000001 334566889999999998866 55566888877
Q ss_pred eecccccCceeEEEEeCCC--ceeEEEEccC--------C-------C--eEEEEeccCCCceEEEEECCcceeeeeccc
Q 005140 495 MRTAQHAGRVSKLTTLKGK--QANALFWSPS--------G-------R--FIVLAGLKGFNGQLEFYNVDELETMATAEH 555 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~--~v~~l~~spd--------g-------~--~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~ 555 (712)
..+-+ .-..+-+| ++.++.|+|. | . .+|+|+. |+.|.||.....+.+...|+
T Consensus 252 R~tWk------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq---DrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 252 RGTWK------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ---DRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred cCCce------eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC---CccEEEEecCCCCchhhhhh
Confidence 63322 23334344 7899999882 1 1 3445555 99999999987777766544
Q ss_pred ---cceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 556 ---FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 556 ---~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
..|.+++|||||..|+.+|. ||+|.+..+..+
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~-----DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSL-----DGTVALIHFEEK 357 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEec-----CCeEEEEEcchH
Confidence 78999999999999999999 999999998743
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=218.51 Aligned_cols=285 Identities=14% Similarity=0.265 Sum_probs=218.5
Q ss_pred CCCCCCccchhhccCCCCCc----------eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec
Q 005140 164 KPYTPGENLQKWLTDEKARD----------QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR 233 (712)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~ 233 (712)
.-|.|+.+.+.|-.+++|-. .++..+-|+.+.+|+.-....+++.|.+|..+|..++||++|+.+.+++-
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 44556677777777776543 34445557888899986678899999999999999999999999999999
Q ss_pred Cc-eEEeecccCcceeeeecCCC-eeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 234 QG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 234 ~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
|+ +++||.+ +++.+.+|+... +.|+.|+||+ +.+++|+.+ +.|+.||+++|+.++.+..|.+.+.
T Consensus 279 D~~lKlwDtE-TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd----------~ki~~wDiRs~kvvqeYd~hLg~i~- 346 (503)
T KOG0282|consen 279 DRFLKLWDTE-TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSD----------KKIRQWDIRSGKVVQEYDRHLGAIL- 346 (503)
T ss_pred ceeeeeeccc-cceEEEEEecCCCceeeecCCCCCcEEEEecCC----------CcEEEEeccchHHHHHHHhhhhhee-
Confidence 99 8899999 999999998776 8999999999 788889999 9999999999999999988877653
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
.+.|-+ +|+++++.+ +++++||+......+.... ...-...++..+|.+++++. -+.++
T Consensus 347 ------------~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a-----Qs~dN- 407 (503)
T KOG0282|consen 347 ------------DITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA-----QSMDN- 407 (503)
T ss_pred ------------eeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh-----hccCc-
Confidence 789999 999999999 9999999988665443221 12223567888999888886 22222
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC--CCce
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--NDKI 466 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--~~~v 466 (712)
+|.++.+.. .|.+..+ ..+.+| .+.-
T Consensus 408 -~i~ifs~~~---------------------------------------------~~r~nkk------K~feGh~vaGys 435 (503)
T KOG0282|consen 408 -YIAIFSTVP---------------------------------------------PFRLNKK------KRFEGHSVAGYS 435 (503)
T ss_pred -eEEEEeccc---------------------------------------------ccccCHh------hhhcceeccCce
Confidence 333332111 1111110 112233 3556
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC-CeEEEEeccCCCceEEEEE
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG-RFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd 543 (712)
..+.|||||.+|++|..+| .+.+||.++.. .+..+..| ++..+.|+|.. ..+|+++. +|.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG---~v~~wdwkt~k------l~~~lkah~~~ci~v~wHP~e~Skvat~~w---~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDG---KVNFWDWKTTK------LVSKLKAHDQPCIGVDWHPVEPSKVATCGW---DGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCc---cEEEeechhhh------hhhccccCCcceEEEEecCCCcceeEeccc---CceeEecC
Confidence 6789999999999999999 99999997644 55555544 78999999965 56788888 99999996
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=219.93 Aligned_cols=233 Identities=13% Similarity=0.207 Sum_probs=178.0
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc---CCCEEEEEEcccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS---SGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~~~~~~~~~~~~~~ 438 (712)
++.+++.||+|++||. +|..+.+.+|++.+.+.+.....+...+.++.++. ..+.||.++.+..
T Consensus 461 G~R~~~vSp~gqhLAs-------GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl------ 527 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLAS-------GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL------ 527 (1080)
T ss_pred ceEEEEECCCcceecc-------cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce------
Confidence 4889999999999998 77777777888877776666666777777776664 2356777776655
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC--CEEEEEEcCCCCCeEEEEEeecccccCce--eEEEEeCCCc
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIHGDSPRPDISFYSMRTAQHAGRV--SKLTTLKGKQ 514 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~~d~~~~~v~i~d~~~~~~~~~~--~~~~~~~~~~ 514 (712)
+.+|++...-.+ ..++.+|...|+++.|.-+| ..+++++.|. .| .|+........++ ....++....
T Consensus 528 ---IHV~Dv~rny~l--~qtld~HSssITsvKFa~~gln~~MiscGADk---si-mFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 528 ---IHVYDVKRNYDL--VQTLDGHSSSITSVKFACNGLNRKMISCGADK---SI-MFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred ---EEEEecccccch--hhhhcccccceeEEEEeecCCceEEEeccCch---hh-heehhccccCceeccccccccccce
Confidence 677777543222 24577899999999999887 6777777776 33 4444332221111 1122233346
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+..++..|..+++++++. |..|+||++.++++..+ .|.+....+..+|.|-|||++.. |.++.++|+
T Consensus 599 lYDm~Vdp~~k~v~t~cQ---Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-----dktl~~~Df 670 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQ---DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-----DKTLCFVDF 670 (1080)
T ss_pred EEEeeeCCCcceEEEEec---ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-----CCceEEEEe
Confidence 788999999999999998 99999999999998875 34477889999999999999999 999999998
Q ss_pred c-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 590 N-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 590 ~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
. |+++.+. |.+.|+.+.|.+|.+.|++.+.|+.|.
T Consensus 671 ~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 671 VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred ccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 6 6776654 778999999999999999999999875
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=207.27 Aligned_cols=274 Identities=16% Similarity=0.222 Sum_probs=217.4
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee----------cCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY----------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~----------~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
...+.|..|||||+||++|+-|| |-+|+.. +++....+ ....|.|+.||.|...||+|+.|
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD------- 284 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD------- 284 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC-------
Confidence 45577899999999999999999 6799987 55543322 23359999999999999999999
Q ss_pred CCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|+||.+.+|.+++.|. .|...++ +++||. |+..+.+++ |.+++|.-+.+|+.+.....|
T Consensus 285 ---GkIKvWri~tG~ClRrFdrAHtkGvt-------------~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 285 ---GKIKVWRIETGQCLRRFDRAHTKGVT-------------CLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred ---CcEEEEEEecchHHHHhhhhhccCee-------------EEEEcc-CcchhhcccccceEEEeccccchhHHHhcCc
Confidence 999999999999999997 5665553 899999 999999888 999999999999999988899
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
..-|+...|+++|+++++ ++.|++++||... +...+.. |.|-
T Consensus 348 sSyvn~a~ft~dG~~iis-----aSsDgtvkvW~~K--tteC~~T------------fk~~------------------- 389 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIIS-----ASSDGTVKVWHGK--TTECLST------------FKPL------------------- 389 (508)
T ss_pred cccccceEEcCCCCeEEE-----ecCCccEEEecCc--chhhhhh------------ccCC-------------------
Confidence 999999999999999999 8888888876432 1111111 1111
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-----CC
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-----GK 513 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~ 513 (712)
+...+|+++..-| +-..++++.... +|.|.++... .+.++. ++
T Consensus 390 ---------------------~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~qGQ-------vVrsfsSGkREgG 438 (508)
T KOG0275|consen 390 ---------------------GTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQGQ-------VVRSFSSGKREGG 438 (508)
T ss_pred ---------------------CCcccceeEEEcCCCCceEEEEcCCC---eEEEEeccce-------EEeeeccCCccCC
Confidence 1134555555555 345677776666 8889888432 455554 23
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..-+.+.||.|.++++.+. |+.++.|...+|++-.+ .|...+..++-+|....||+.+. |+.+++|.
T Consensus 439 dFi~~~lSpkGewiYcigE---D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE-----DgllKLWk 507 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGE---DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE-----DGLLKLWK 507 (508)
T ss_pred ceEEEEecCCCcEEEEEcc---CcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc-----cchhhhcC
Confidence 4567789999999999998 99999999998887665 56678889999999999999999 99999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=226.55 Aligned_cols=201 Identities=14% Similarity=0.258 Sum_probs=173.8
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.+-+|.++|..+.|||+.++|++++.|+ +++|.+. +...+..+. |. .|.++.|+|-|-|+||++.|
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D---------- 514 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD---------- 514 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecc-cceeEEEecCCCcceeeEEecCCceEEEecCCC----------
Confidence 3678999999999999999999999998 8999999 777666553 44 49999999999999999999
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCe
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
++.++|......++|.|.+|...+. |+.|.| +..|+|+++ |.++++||+.+|..+.....|...|
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~-------------cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVD-------------CVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred ceeeeeecccCCchhhhcccccccc-------------eEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 9999999999999999999988874 799999 999999999 9999999999999998889999999
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|||+|++|++ |+.++.+.|| +++....+
T Consensus 581 ~al~~Sp~Gr~LaS-----g~ed~~I~iW--Dl~~~~~v----------------------------------------- 612 (707)
T KOG0263|consen 581 TALAFSPCGRYLAS-----GDEDGLIKIW--DLANGSLV----------------------------------------- 612 (707)
T ss_pred EEEEEcCCCceEee-----cccCCcEEEE--EcCCCcch-----------------------------------------
Confidence 99999999999998 6566555544 33322111
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
..+.+|.+.|.++.||.+|..||+++.|. +|++||+..
T Consensus 613 -------------~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~ 650 (707)
T KOG0263|consen 613 -------------KQLKGHTGTIYSLSFSRDGNVLASGGADN---SVRLWDLTK 650 (707)
T ss_pred -------------hhhhcccCceeEEEEecCCCEEEecCCCC---eEEEEEchh
Confidence 23457888999999999999999999998 899999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=197.42 Aligned_cols=291 Identities=14% Similarity=0.163 Sum_probs=227.8
Q ss_pred CCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEe
Q 005140 161 PEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVW 239 (712)
Q Consensus 161 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw 239 (712)
|....+...+.+....++|+| ..|+.+..|..+++||.....+-...+++|...|..+.|++||..|++++.|. ++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 333444445677788888954 47788888899999997555556667889999999999999999999999999 8899
Q ss_pred ecccCcceeeeec-CCC-eeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCc
Q 005140 240 GGANTFNRLMRYA-HPQ-VKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGV 316 (712)
Q Consensus 240 ~~~~~~~~~~~~~-~~~-v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (712)
|.. +++++.++. |.. |.++.-+.-|..| .+++.| ++++|||+++...++++.......
T Consensus 118 D~~-tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyqlt-------- 178 (338)
T KOG0265|consen 118 DAE-TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQLT-------- 178 (338)
T ss_pred ecc-cceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhccccceeEE--------
Confidence 999 899888874 555 7888755556554 566666 999999999999988886665544
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
++.|.. .+..+.+++ |+.|++||+.....+.....|.+.|..++.+|+|.++.+ .+.+..+++|.+.
T Consensus 179 ------Av~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls-----nsMd~tvrvwd~r 246 (338)
T KOG0265|consen 179 ------AVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS-----NSMDNTVRVWDVR 246 (338)
T ss_pred ------EEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc-----ccccceEEEEEec
Confidence 789998 888888888 999999999988888888899999999999999999998 6677777777654
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
. |.|.-+.+.+.... . ..+ .......+|||++
T Consensus 247 p--------------------~~p~~R~v~if~g~------------------~-------hnf---eknlL~cswsp~~ 278 (338)
T KOG0265|consen 247 P--------------------FAPSQRCVKIFQGH------------------I-------HNF---EKNLLKCSWSPNG 278 (338)
T ss_pred c--------------------cCCCCceEEEeecc------------------h-------hhh---hhhcceeeccCCC
Confidence 2 44544433221110 0 001 2233457999999
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.++.+++.|. .+++||..... .+..+++| .|+++.|+|...+|.+++. |.+|++=.
T Consensus 279 ~~i~ags~dr---~vyvwd~~~r~------~lyklpGh~gsvn~~~Fhp~e~iils~~s---dk~i~lge 336 (338)
T KOG0265|consen 279 TKITAGSADR---FVYVWDTTSRR------ILYKLPGHYGSVNEVDFHPTEPIILSCSS---DKTIYLGE 336 (338)
T ss_pred Cccccccccc---eEEEeeccccc------EEEEcCCcceeEEEeeecCCCcEEEEecc---CceeEeec
Confidence 9999999999 99999985533 67788877 6999999999999999998 88887643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=189.93 Aligned_cols=268 Identities=13% Similarity=0.227 Sum_probs=216.6
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
+...|..+.|+-||+|.++++.| .+|++|+...|.+++++.+|...+. ..+.+. |+
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsd----------rtvrLWNp~rg~liktYsghG~EVl-------------D~~~s~-Dn 71 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSD----------RTVRLWNPLRGALIKTYSGHGHEVL-------------DAALSS-DN 71 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCC----------ceEEeecccccceeeeecCCCceee-------------eccccc-cc
Confidence 44559999999999999999999 9999999999999999999988773 466677 88
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
..|++++ |..+.+||+.+|+.+.+...|...|+.+.|+.+...+++ |+-|...++|.....+.+++....
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~S-----gsfD~s~r~wDCRS~s~ePiQild---- 142 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVAS-----GSFDSSVRLWDCRSRSFEPIQILD---- 142 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEe-----ccccceeEEEEcccCCCCccchhh----
Confidence 8888887 999999999999999999999999999999999999998 778888777765443333222111
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
...+.|.++.. .+..|+.++.|| ++
T Consensus 143 --------------------------------------------------ea~D~V~Si~v--~~heIvaGS~DG---tv 167 (307)
T KOG0316|consen 143 --------------------------------------------------EAKDGVSSIDV--AEHEIVAGSVDG---TV 167 (307)
T ss_pred --------------------------------------------------hhcCceeEEEe--cccEEEeeccCC---cE
Confidence 11455656555 467899999999 99
Q ss_pred EEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccc--eeeEEECCC
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM--ATDVEWDPT 566 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~--v~~~~~spd 566 (712)
+.||++.+. .....-+++|++++||+||+..+.++. +++|++.|-.+|+++.. +|... -.+++++..
T Consensus 168 RtydiR~G~------l~sDy~g~pit~vs~s~d~nc~La~~l---~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 168 RTYDIRKGT------LSSDYFGHPITSVSFSKDGNCSLASSL---DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred EEEEeecce------eehhhcCCcceeEEecCCCCEEEEeec---cceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 999998765 445556889999999999999999998 99999999999999876 44433 346778888
Q ss_pred CCEEEEEEccceeccccEEEEEec-Cceeeeec--cc-ceeeeEEecCCCCCCChhhHH
Q 005140 567 GRYVATAVTSVHEMENGFNIWSFN-GKLLYRTL--KD-HFFQFLWRPRPPSFLTPEKEE 621 (712)
Q Consensus 567 g~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~--~~-~i~~~~w~p~~~~l~s~~~d~ 621 (712)
...+++|+. ||.+++|++. +.++.+.. .. .+.++.++|.-..++++...+
T Consensus 239 dthV~sgSE-----DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 239 DTHVFSGSE-----DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred ceeEEeccC-----CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 889999999 9999999986 45555442 23 378999999988888776544
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=223.73 Aligned_cols=308 Identities=15% Similarity=0.205 Sum_probs=242.2
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
|......|..++|+|.-.++.++...| |.+||.. -+..+.+| .|.+ |+.++|+|++.++++|+.| .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDD----------y 73 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDD----------Y 73 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecCCCCeEEecCCc----------c
Confidence 344456788899999999999999999 7799998 77788888 4665 9999999999999999999 8
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCee
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
.|+||+..+.+++-++.+|.+-+. .+.|++ .=-.|.+++ |.+|+||+..+.+.+.....|..-|.
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVR-------------t~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVR-------------TVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEEEEecccceehhhhccccceeE-------------EeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 999999999999999999988774 578888 888999999 99999999999999999999999999
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
|..|+|....+++ +|-|++++||....-..+......+. - ...|..+ + ..+
T Consensus 140 cAqFhptEDlIVS-----aSLDQTVRVWDisGLRkk~~~pg~~e----~----~~~~~~~-----~-----------~dL 190 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVS-----ASLDQTVRVWDISGLRKKNKAPGSLE----D----QMRGQQG-----N-----------SDL 190 (1202)
T ss_pred eeccCCccceEEE-----ecccceEEEEeecchhccCCCCCCch----h----hhhcccc-----c-----------hhh
Confidence 9999999999998 88999999988765333221111000 0 0011110 0 001
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEcc
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP 522 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~sp 522 (712)
+- ..-.+-...+.||...|+-++|+|.-..|++|+.|. .|++|.+...+. -.+.+..+| .|+++.|+|
T Consensus 191 fg---~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR---qVKlWrmnetKa----WEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 191 FG---QTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKA----WEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred cC---CcCeeeeeeecccccccceEEecCCcceEEecCCcc---eeeEEEeccccc----eeehhhhcccCCcceEEecC
Confidence 10 001112244679999999999999999999999999 999999964332 134455555 799999999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeec--cccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATA--EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
....+++.+. |+.|++||+...+.+.+. .+...+.++-+|....+|.|.. +++.+|.+
T Consensus 261 ~q~lIlSnsE---DksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD------sGm~VFkl 320 (1202)
T KOG0292|consen 261 HQDLILSNSE---DKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD------SGMIVFKL 320 (1202)
T ss_pred ccceeEecCC---CccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC------CceEEEEE
Confidence 9999999998 999999999988777765 6678889999999988877764 45555544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=192.58 Aligned_cols=287 Identities=13% Similarity=0.189 Sum_probs=224.2
Q ss_pred cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|. .++.+.++.+|..|.+++.| .++.||-..+|+.+-++.+|.+.+ | ++...- +
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD----------~~~~vw~s~nGerlGty~GHtGav------------W-~~Did~-~ 63 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKD----------STPTVWYSLNGERLGTYDGHTGAV------------W-CCDIDW-D 63 (327)
T ss_pred cCccccceEEecCCCcEEEEecCC----------CCceEEEecCCceeeeecCCCceE------------E-EEEecC-C
Confidence 354 49999999999999999999 889999988999999999999987 8 577777 8
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-------ccce
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-------KEEL 402 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-------~~~~ 402 (712)
.+++++++ |.++++||+++|+.+...... ..|..+.|+++|+++++..... .+.+..|.+++++. ..++
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~--mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQ--MGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhh--cCcceEEEEEEccCChhhhcccCce
Confidence 89999999 999999999999988655332 3489999999999998866555 56677788888763 2334
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
..............|+|-+++|+++..++. +..|+++.....+... ..|...|++++++||..+|++++
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~---------is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGS---------ISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCc---------EEEEEcccCceeeech--hhhccccccccccCCcceEEecc
Confidence 444444555667789999999999999887 7888887643333222 34788999999999999999999
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEE------------EEECCccee
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLE------------FYNVDELET 549 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~------------iwd~~~~~~ 549 (712)
.|. +-++||+.+-. .++++. ..|+++.+++|-..+++.++..+ ...|. +|++-..+.
T Consensus 210 ~Dt---takl~D~~tl~------v~Kty~te~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 210 KDT---TAKLVDVRTLE------VLKTYTTERPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred cCc---cceeeecccee------eEEEeeecccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHH
Confidence 999 88999997643 566665 45899999999988888876421 11121 122111122
Q ss_pred ee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 550 MA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 550 ~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+. ++|-++|++++|+|+|+-.++|+. ||.|+|..+..
T Consensus 280 igrvkGHFGPINsvAfhPdGksYsSGGE-----DG~VR~h~Fd~ 318 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDGKSYSSGGE-----DGYVRLHHFDS 318 (327)
T ss_pred hccccccccCcceeEECCCCcccccCCC-----CceEEEEEecc
Confidence 22 367799999999999999999999 99999987764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=233.17 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=196.9
Q ss_pred cCCCCCceEEEEE--CCeeEEEecCCCC-----------CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc
Q 005140 177 TDEKARDQFVIRS--GTDTEVLWNDARH-----------LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA 242 (712)
Q Consensus 177 ~~~~~~~~~~~~~--~~~~~~~w~~~~~-----------~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~ 242 (712)
.+|+|. .|+.+. .|+.+++|+...- .+.......|..+|+|+.|||||+|||+|+.|+ |.||...
T Consensus 21 v~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 21 VHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred ecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 344443 344444 4666779986321 122234467999999999999999999999999 5699765
Q ss_pred c-----------------Ccceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC
Q 005140 243 N-----------------TFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG 303 (712)
Q Consensus 243 ~-----------------~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~ 303 (712)
. .++.+..+ .|. .|..++|||++.+||+++.| ++|.||+..+.+.++.+.+
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D----------nsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD----------NSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc----------ceEEEEccccceeeeeeec
Confidence 1 11122333 344 59999999999999999999 9999999999999999999
Q ss_pred CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc------CeeeEEECCCCCeEE
Q 005140 304 SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE------NVMDFSWSPTDPIIS 376 (712)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~------~v~~~~~sp~~~~la 376 (712)
|...+ . -+.|.| -|+|||+.+ |++|+||.+.+.........+.. -+.-++|||||.+|+
T Consensus 170 H~s~V--------K-----Gvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 170 HQSLV--------K-----GVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ccccc--------c-----ceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 98765 3 378999 999999999 99999999887655443322222 266778888888888
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
+. .+- + .+...+....++ -|.. .
T Consensus 236 s~-----nA~-------------------------------n-~~~~~~~IieR~------------tWk~--------~ 258 (942)
T KOG0973|consen 236 SP-----NAV-------------------------------N-GGKSTIAIIERG------------TWKV--------D 258 (942)
T ss_pred ch-----hhc-------------------------------c-CCcceeEEEecC------------Ccee--------e
Confidence 62 110 0 111111111111 1111 1
Q ss_pred EEecCCCCceEEEEEeeC-----CC------------EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEE
Q 005140 457 LELDNKNDKIIAFAWEPK-----GH------------RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALF 519 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~-----g~------------~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~ 519 (712)
..|-+|..++.++.|+|. .+ .+|+|+.|+ +|.||...... .+-.++.+.++.|..++
T Consensus 259 ~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr---SlSVW~T~~~R---Pl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 259 KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR---SLSVWNTALPR---PLFVIHNLFNKSIVDMS 332 (942)
T ss_pred eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc---cEEEEecCCCC---chhhhhhhhcCceeeee
Confidence 446689999999999872 11 466777788 99999974322 12233445577899999
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCc
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
|||||..|+.++. ||+|.++.++.
T Consensus 333 WspdG~~LfacS~---DGtV~~i~Fee 356 (942)
T KOG0973|consen 333 WSPDGFSLFACSL---DGTVALIHFEE 356 (942)
T ss_pred EcCCCCeEEEEec---CCeEEEEEcch
Confidence 9999999999999 99999999874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=214.29 Aligned_cols=270 Identities=19% Similarity=0.365 Sum_probs=211.2
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
...|.+++|+|++++|++++.+ +.|++|++.+++....+..|...+. .+.|++ +++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~----------g~i~i~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~~ 64 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGD----------GTIKVWDLETGELLRTLKGHTGPVR-------------DVAASA-DGT 64 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecC----------cEEEEEEeeCCCcEEEEecCCccee-------------EEEECC-CCC
Confidence 3459999999999999999998 9999999998888888877765542 589999 999
Q ss_pred EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 333 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
++++++ ++.|.+|++.+++.+.....+...+.++.|+|++.++++ ++.++. +.+|++.+.+
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~--i~~~~~~~~~----------- 126 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS-----SSRDKT--IKVWDVETGK----------- 126 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEE-----ecCCCe--EEEEECCCcE-----------
Confidence 999988 999999999987666555556667899999998877776 333443 3333332110
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
....+..|...+.+++|+|++.++++++.++ .|.
T Consensus 127 -------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~ 160 (289)
T cd00200 127 -------------------------------------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDG---TIK 160 (289)
T ss_pred -------------------------------------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCC---cEE
Confidence 0012225678899999999988888887678 899
Q ss_pred EEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCC
Q 005140 492 FYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTG 567 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg 567 (712)
+|+++++. .+..+. ...+.++.|+|+++.+++++. ++.|.+||+..++.+.. .+...+.++.|+|++
T Consensus 161 i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 161 LWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EEEccccc------cceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 99997544 233333 336899999999999999987 99999999998777665 455689999999999
Q ss_pred CEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 568 RYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 568 ~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.++++++. ++.+++|++. +..+... +...+.++.|+|++..|++++.++.++
T Consensus 232 ~~~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 232 YLLASGSE-----DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred cEEEEEcC-----CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 99999987 8999999987 4444333 556899999999999999998887653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=212.25 Aligned_cols=301 Identities=14% Similarity=0.205 Sum_probs=206.5
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc-e------eeeecCCCeeEEEecCCCCEEEEEcCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-R------LMRYAHPQVKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-~------~~~~~~~~v~~i~~Spdg~~l~t~s~d 274 (712)
...+..+++|+..|+.+++-|.|..|++|+-|. |++||.. ... . +.-.....|.+++|||.|..|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQ-GMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecc-cccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 445667899999999999999999999999998 8899987 332 1 111123349999999999988888877
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCC-CCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCc
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGT-GGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESF 350 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~ 350 (712)
.+.+|+| +.|..+..+. +.........+ +++..+. +.+|.| +.+ .|.+++ |++++||++.
T Consensus 236 ----------aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt--~g~whP-~~k~~FlT~s~DgtlRiWdv~-- 299 (641)
T KOG0772|consen 236 ----------AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELT--CGCWHP-DNKEEFLTCSYDGTLRIWDVN-- 299 (641)
T ss_pred ----------cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeee--cccccc-CcccceEEecCCCcEEEEecC--
Confidence 7899999 4665433321 11100000000 0011111 345555 332 333333 5555555554
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeee--eeeeecceeEEECcCCCEEEE
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQK--NLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~--~~~~~~~~~~~~s~~g~~l~~ 426 (712)
....+ .+..+ ....+....++|+++|+.||.
T Consensus 300 ---------------------------------------------~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 300 ---------------------------------------------NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred ---------------------------------------------CchhheeEEeeccCCCcccCceeeecCCCcchhhh
Confidence 22111 11111 112344555689999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+..++. +++|+............-.+|.. .|+|++||++|++|++-+.|. ++++||++..+.
T Consensus 335 gc~DGS---------IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---tLKvWDLrq~kk---- 398 (641)
T KOG0772|consen 335 GCLDGS---------IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---TLKVWDLRQFKK---- 398 (641)
T ss_pred cccCCc---------eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---ceeeeecccccc----
Confidence 999988 89999765443333333347777 899999999999999999999 999999987553
Q ss_pred eEEEEeC----CCceeEEEEccCCCeEEEEeccC---CCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 505 SKLTTLK----GKQANALFWSPSGRFIVLAGLKG---FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 505 ~~~~~~~----~~~v~~l~~spdg~~l~~~~~~~---~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
++.... ..+-+.++|||+.+.|++|.... ..|.|+|||..+...+.. .....|..+.|+|.=..|..++.
T Consensus 399 -pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 399 -PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred -chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 333322 22567899999999999986422 357899999999888876 34577889999999889999999
Q ss_pred cceeccccEEEE
Q 005140 576 SVHEMENGFNIW 587 (712)
Q Consensus 576 ~~~~~d~~v~iw 587 (712)
||+++||
T Consensus 478 -----dG~~~vy 484 (641)
T KOG0772|consen 478 -----DGTAHVY 484 (641)
T ss_pred -----CCceEEE
Confidence 8999886
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-23 Score=190.32 Aligned_cols=286 Identities=14% Similarity=0.255 Sum_probs=212.2
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.++...|..-...++++.||++|.+|++++.|. ++|||.. ++.++.++.+. ++..+.|......++.++..
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk----- 77 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK----- 77 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEeecccccccEEEEecCCceEEEccCC-----
Confidence 344455555667899999999999999988775 8899999 88988888765 69999998888877777762
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
.+.+|+..++.+.+.+|.|.||...+. .++.+| -+..+.+++ |++|++||++..+.... +
T Consensus 78 ---~d~tIryLsl~dNkylRYF~GH~~~V~-------------sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~--l 138 (311)
T KOG1446|consen 78 ---EDDTIRYLSLHDNKYLRYFPGHKKRVN-------------SLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGL--L 138 (311)
T ss_pred ---CCCceEEEEeecCceEEEcCCCCceEE-------------EEEecC-CCCeEEecccCCeEEeeEecCCCCceE--E
Confidence 016899999999999999999999875 789999 788888888 99999999985544322 2
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
+..+-...+|.|.|-++|+ +.+.. .|.+|++
T Consensus 139 ~~~~~pi~AfDp~GLifA~-----~~~~~--~IkLyD~------------------------------------------ 169 (311)
T KOG1446|consen 139 NLSGRPIAAFDPEGLIFAL-----ANGSE--LIKLYDL------------------------------------------ 169 (311)
T ss_pred ecCCCcceeECCCCcEEEE-----ecCCC--eEEEEEe------------------------------------------
Confidence 3333445677777777776 22222 4444443
Q ss_pred cccEEEEEEecC-CcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc--
Q 005140 439 YTGFELFRIKER-DIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 514 (712)
Q Consensus 439 ~~~~~l~~l~~~-~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 514 (712)
+.- ..|...+.+. +-....+.+.|||||++++.+...+ .+++.|.-+|. .+.++..++
T Consensus 170 ---------Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G~------~~~tfs~~~~~ 231 (311)
T KOG1446|consen 170 ---------RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDGT------VKSTFSGYPNA 231 (311)
T ss_pred ---------cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCCc------EeeeEeeccCC
Confidence 321 2233333332 2245678899999999999999888 78888875554 444444331
Q ss_pred ---eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--c-cccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 515 ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--A-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 ---v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
--..+|+|||+++++++. ||+|.+|+++++..+.. + +.+.++++.|+|.-..+++++. .+.+|-
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~---dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-------~l~fw~ 301 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSD---DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-------NLVFWL 301 (311)
T ss_pred CCcceeEEECCCCcEEEEecC---CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-------eEEEEe
Confidence 246889999999999998 99999999999988775 3 4578899999997666666655 677775
Q ss_pred ec
Q 005140 589 FN 590 (712)
Q Consensus 589 ~~ 590 (712)
..
T Consensus 302 p~ 303 (311)
T KOG1446|consen 302 PD 303 (311)
T ss_pred cc
Confidence 44
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=203.29 Aligned_cols=416 Identities=13% Similarity=0.174 Sum_probs=276.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEE
Q 005140 107 KSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFV 186 (712)
Q Consensus 107 ~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 186 (712)
..+|.+-|.|+........+.. .-...|.+.|..|..-.+...+...-.. +...-++|... .++
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~v----D~s~~h~lSVWdWqk~~~~~~vk~sne~-----------v~~a~FHPtd~-nli 216 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAV----DDSNPHMLSVWDWQKKAKLGPVKTSNEV-----------VFLATFHPTDP-NLI 216 (626)
T ss_pred ccccceeeeecccCCCceEEEe----cCCCccccchhhchhhhccCcceeccce-----------EEEEEeccCCC-cEE
Confidence 4567777777653222111110 1113477888888777776655433221 11222334333 568
Q ss_pred EEECCeeEEEecCCCCCC---Cccccc-CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEE
Q 005140 187 IRSGTDTEVLWNDARHLK---PEPVYK-RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLI 259 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~~~~---~~~~~~-~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i 259 (712)
+++|.+...+|... .+. ....|. +....|.|++|.++|. ++||..+| |.||+.. +.+...+. .|+ +|.++
T Consensus 217 it~Gk~H~~Fw~~~-~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L 293 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLR-GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSL 293 (626)
T ss_pred EEeCCceEEEEEcc-CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEEeEeeecCCceEEE
Confidence 99999999999763 322 222333 3447899999999997 56888888 7799987 44433332 455 49999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec------------cCCCcccccCCC--------------
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF------------KGSADEFAVGGT-------------- 313 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~------------~~~~~~~~~~~~-------------- 313 (712)
+.-.+|..| +|+.| ..|..|| ..-+.++.. ........+|.+
T Consensus 294 ~~lr~Gtll-SGgKD----------Rki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 294 CMLRDGTLL-SGGKD----------RKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred EEecCccEe-ecCcc----------ceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 999999855 59999 8999998 232222211 111111111100
Q ss_pred ----CCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 314 ----GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 314 ----~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
+... -.|. ++-.| +...+++++ |+.+++|+ ..+++..+ .-...+.++.|+|.| .+|+ +...
T Consensus 362 ~~v~gh~d-elwg-la~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~-------Gt~~ 427 (626)
T KOG2106|consen 362 LTVQGHGD-ELWG-LATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAV-------GTAT 427 (626)
T ss_pred EEEEeccc-ceee-EEcCC-ChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEE-------eecc
Confidence 0011 2364 77788 888888888 99999999 44555444 334568999999999 7777 5566
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEE
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 468 (712)
++..+++..+...+..+.- ......+.|+|+|.+||+++.++. +.+|.++..+........ .|..+|+.
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~---------iyiy~Vs~~g~~y~r~~k-~~gs~ith 496 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH---------IYIYRVSANGRKYSRVGK-CSGSPITH 496 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe---------EEEEEECCCCcEEEEeee-ecCceeEE
Confidence 6777888877655555544 555666789999999999999987 899999988776554443 34489999
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC----------ceeE-EEEeC---CCceeEEEEccCCCeEEEEeccC
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG----------RVSK-LTTLK---GKQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~----------~~~~-~~~~~---~~~v~~l~~spdg~~l~~~~~~~ 534 (712)
+.||+|+++|.+.+.|- .|-+|......... +|.. ...+. +..++.++-|.+.+.+++|..
T Consensus 497 LDwS~Ds~~~~~~S~d~---eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd-- 571 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNSGDY---EILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD-- 571 (626)
T ss_pred eeecCCCceEEeccCce---EEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc--
Confidence 99999999999999988 89999432211100 0110 01111 223566777888889999887
Q ss_pred CCceEEEEECCccee-----eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 535 FNGQLEFYNVDELET-----MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~-----~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.|.|++|...-.+. ....|.+.+++++|+-+...+++.+. |.++..|++
T Consensus 572 -~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~-----D~Si~qW~l 625 (626)
T KOG2106|consen 572 -FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGK-----DTSIMQWRL 625 (626)
T ss_pred -CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCC-----CceEEEEEe
Confidence 89999998763222 23477789999999998888888887 999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=225.01 Aligned_cols=276 Identities=17% Similarity=0.215 Sum_probs=217.4
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCC--CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
...+-+.++|+- ++....++.+.+|+. .... ....+.+|...|+.++|||+|++|++++.|+ ++||++...+..+
T Consensus 162 v~~~~fs~~g~~-l~~~~~~~~i~~~~~-~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 162 VTCVDFSPDGRA-LAAASSDGLIRIWKL-EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred eEEEEEcCCCCe-EEEccCCCcEEEeec-ccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 444667788886 677778999999998 3444 6667789999999999999999999999999 8899995255666
Q ss_pred eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 249 MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 249 ~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
..+ .|. .|++++|+|+|+.|++|+.| ++|+|||+.++++++.+.+|...++ .++|
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D----------~tvriWd~~~~~~~~~l~~hs~~is-------------~~~f 296 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDD----------GTVRIWDVRTGECVRKLKGHSDGIS-------------GLAF 296 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCC----------CcEEEEeccCCeEEEeeeccCCceE-------------EEEE
Confidence 655 455 49999999999999999999 9999999999999999999998774 7899
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCcee--ccccccccc--CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTL--IDKKSLKVE--NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
++ ++.+|++++ |+.|+|||+.++.. +.....+.. .+..+.|+|++.+|++ ++.++.+++|.+. ....
T Consensus 297 ~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~-----~~~d~~~~~w~l~--~~~~ 368 (456)
T KOG0266|consen 297 SP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS-----ASLDRTLKLWDLR--SGKS 368 (456)
T ss_pred CC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE-----ecCCCeEEEEEcc--CCcc
Confidence 99 999999999 99999999998883 232222222 5899999999999999 7777777766655 3332
Q ss_pred eeeeeeeee---cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCE
Q 005140 402 LRQKNLFSV---SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHR 477 (712)
Q Consensus 402 ~~~~~~~~~---~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~ 477 (712)
+.....+.. .......++.|.+++++..+.. +.+|++...... ..+.+| ...+..++|+|...+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~---------v~~~~~~s~~~~---~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS---------VYVWDSSSGGIL---QRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCce---------EEEEeCCccchh---hhhcCCCCCceeccccCCCcCe
Confidence 222222222 1222344789999999999887 889988763322 346678 889999999999999
Q ss_pred EEEEE--cCCCCCeEEEEEe
Q 005140 478 FAVIH--GDSPRPDISFYSM 495 (712)
Q Consensus 478 l~~~~--~d~~~~~v~i~d~ 495 (712)
+++.+ .|+ .+++|..
T Consensus 437 ~~s~s~~~d~---~~~~w~~ 453 (456)
T KOG0266|consen 437 IASSSFEGDG---LIRLWKY 453 (456)
T ss_pred eeecCcCCCc---eEEEecC
Confidence 99998 456 8999975
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=193.97 Aligned_cols=279 Identities=14% Similarity=0.244 Sum_probs=225.3
Q ss_pred cccccCCCcccceEEEcC---CCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCC
Q 005140 206 EPVYKRSYWTESFVQWSP---LGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Sp---dg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
-....+|..+|-.++||| +|-+|++++.|+ -.+-+.+ ++.-+.+| .|.+ |.+.++..+-...|+++.|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~-tgdwigtfeghkgavw~~~l~~na~~aasaaad----- 80 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD-TGDWIGTFEGHKGAVWSATLNKNATRAASAAAD----- 80 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC-CCCcEEeeeccCcceeeeecCchhhhhhhhccc-----
Confidence 345689999999999995 899999999999 4578888 88888888 3555 9999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-cccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-DKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-~~~~ 357 (712)
-+-+|||.-+|..+.+|....... .++|+. |.++|.+++ +.-++||+++.-+.- ....
T Consensus 81 -----ftakvw~a~tgdelhsf~hkhivk--------------~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 81 -----FTAKVWDAVTGDELHSFEHKHIVK--------------AVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred -----chhhhhhhhhhhhhhhhhhhheee--------------eEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc
Confidence 889999999999999997654433 689999 999999999 999999999865432 2344
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.|..+|..+.|...++.|++ +..++.+|+|.
T Consensus 141 ghtg~Ir~v~wc~eD~~iLS-----Sadd~tVRLWD-------------------------------------------- 171 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILS-----SADDKTVRLWD-------------------------------------------- 171 (334)
T ss_pred CCCCcceeEEEeccCceEEe-----eccCCceEEEE--------------------------------------------
Confidence 67778988888888777776 44555555443
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCcee
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 516 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 516 (712)
.+.. ..+..+.+ +.+|+++..+++|++|.++.+. .|.+||..+-. +++... ...|.
T Consensus 172 ---------~rTg-t~v~sL~~---~s~VtSlEvs~dG~ilTia~gs----sV~Fwdaksf~------~lKs~k~P~nV~ 228 (334)
T KOG0278|consen 172 ---------HRTG-TEVQSLEF---NSPVTSLEVSQDGRILTIAYGS----SVKFWDAKSFG------LLKSYKMPCNVE 228 (334)
T ss_pred ---------eccC-cEEEEEec---CCCCcceeeccCCCEEEEecCc----eeEEecccccc------ceeeccCccccc
Confidence 2221 12233445 7889999999999988877664 69999996533 666655 33688
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeee---eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+.+.+|+-..+++|+. |+.++.||..+++.+. ++|.++|.++.|||||...|+|+. ||+|+||...
T Consensus 229 SASL~P~k~~fVaGge---d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE-----DGTirlWQt~ 297 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGE---DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE-----DGTIRLWQTT 297 (334)
T ss_pred cccccCCCceEEecCc---ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC-----CceEEEEEec
Confidence 9999999999999888 9999999999887764 478899999999999999999999 9999999876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=205.36 Aligned_cols=277 Identities=14% Similarity=0.194 Sum_probs=221.3
Q ss_pred CCCcccceEEEcCCCcE-EEEEecCceEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 211 RSYWTESFVQWSPLGTY-LATVHRQGAAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~-lat~~~~~i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
....+|++++|||...+ +|+++.-++.||+.. +.....++. ...|.+++|-.||+.||.|... |.|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~s----------G~V 92 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDES----------GHV 92 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEeecCCeEEEccCCc----------CcE
Confidence 34468999999996554 888888899999998 666666553 3459999999999999999998 999
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeE
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
+|||..+...++.+..|..++. .+.|+|.+++.|++++ |+.+++||+.+.........|.+.|.+.
T Consensus 93 ~vfD~k~r~iLR~~~ah~apv~-------------~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 93 KVFDMKSRVILRQLYAHQAPVH-------------VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EEeccccHHHHHHHhhccCcee-------------EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 9999877778999999988763 6889995666778888 8889999999888755667788899999
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEE
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 446 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 446 (712)
+|+|...++++. ||.|+.+++|..
T Consensus 160 ~~~~~~~hivvt----GsYDg~vrl~Dt---------------------------------------------------- 183 (487)
T KOG0310|consen 160 DISPANDHIVVT----GSYDGKVRLWDT---------------------------------------------------- 183 (487)
T ss_pred ccccCCCeEEEe----cCCCceEEEEEe----------------------------------------------------
Confidence 999986655442 666666655443
Q ss_pred EecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC
Q 005140 447 IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG 524 (712)
Q Consensus 447 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg 524 (712)
+..+ ....++ .|..+|.++.+-|.|..||++++. .|++||+-++.. .+..+. ...|+|+++..++
T Consensus 184 -R~~~--~~v~el-nhg~pVe~vl~lpsgs~iasAgGn----~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 184 -RSLT--SRVVEL-NHGCPVESVLALPSGSLIASAGGN----SVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred -ccCC--ceeEEe-cCCCceeeEEEcCCCCEEEEcCCC----eEEEEEecCCce-----ehhhhhcccceEEEEEeecCC
Confidence 2221 112344 678999999999999999998874 699999976543 343333 3479999999999
Q ss_pred CeEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..|++++. |+.+++||+.+.+.+... -.++|.+++.||+++.++.|-. +|.+.+-+
T Consensus 251 ~rLlS~sL---D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms-----nGlv~~rr 307 (487)
T KOG0310|consen 251 TRLLSGSL---DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS-----NGLVSIRR 307 (487)
T ss_pred ceEeeccc---ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc-----cceeeeeh
Confidence 99999999 999999999999998874 4488999999999999999998 77766653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=208.41 Aligned_cols=388 Identities=12% Similarity=0.224 Sum_probs=257.1
Q ss_pred CeeEEEecCCCCCCCcccccCCCcccceEEEcCCCc---EEEEEecCc-eEEeecc-cCcceeeeecCCCeeEEEecCCC
Q 005140 191 TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGA-NTFNRLMRYAHPQVKLIDFSPGE 265 (712)
Q Consensus 191 ~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~-~~~~~~~~~~~~~v~~i~~Spdg 265 (712)
...+.+|+. .+......+.+|...|+|+.|-|+.+ ++++|+.|+ |++|.+. .....+..+++-.+.+++++..-
T Consensus 33 ~~~Iav~dp-~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~ 111 (764)
T KOG1063|consen 33 GPAIAVADP-EKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS 111 (764)
T ss_pred CceEEEeCc-ccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee
Confidence 344557776 33345567899999999999999988 899999999 8899887 23334444544345556655433
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCc-------------------------------------------------
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGK------------------------------------------------- 296 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------------------------------------------------- 296 (712)
......+.+ +++.+||.+..+
T Consensus 112 ~~~~~~~ad----------~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 112 SVMTCKAAD----------GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred eEEEeeccC----------ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 333222444 677777762222
Q ss_pred -eeeeccCCCcccccCCCCCcCCCCcCeEEecCC--CCCEEEEec-CCeEEEEEcCCcee--------------------
Q 005140 297 -VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG--KDKYFAKLG-KNMISVYETESFTL-------------------- 352 (712)
Q Consensus 297 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--dg~~la~~~-d~~i~iwd~~~~~~-------------------- 352 (712)
.+..+.+|.+-+ + .++|... +.-+||+++ |..|+||.+.-+..
T Consensus 182 ~~v~el~GH~DWI--------r-----sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~ 248 (764)
T KOG1063|consen 182 ARVAELEGHTDWI--------R-----SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFM 248 (764)
T ss_pred eEEEEeeccchhh--------h-----hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceee
Confidence 122223333322 2 3444431 345788888 99999998752220
Q ss_pred -ccc----------ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec-----ceeEE
Q 005140 353 -IDK----------KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-----DCKMY 416 (712)
Q Consensus 353 -~~~----------~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~ 416 (712)
+.. ...|.+-|.++.|+|.+..|++ ++.|.+..||.-+-.++--+....+.... -....
T Consensus 249 ~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS-----ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 249 ILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS-----ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred eeeeEEEEEehhhhhcCcccceEEEEEccchhhhee-----cccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 001 1134455999999999977777 88999988887776655433333332222 23447
Q ss_pred ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE---
Q 005140 417 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY--- 493 (712)
Q Consensus 417 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~--- 493 (712)
|+|++..++..+.. +.+++|...++..=.....+.||.+.|.+++|+|.|.+|.+++.|. +-++|
T Consensus 324 w~~n~~~ii~~g~~---------Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ---TTRlFa~w 391 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRT---------GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ---TTRLFARW 391 (764)
T ss_pred EcCCCCEEEEeccc---------CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccc---ceeeeccc
Confidence 99999887765544 3488888333222222233569999999999999999999998886 33332
Q ss_pred -----------------EeecccccC------------------------------------------------------
Q 005140 494 -----------------SMRTAQHAG------------------------------------------------------ 502 (712)
Q Consensus 494 -----------------d~~~~~~~~------------------------------------------------------ 502 (712)
|+..-...+
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence 221000000
Q ss_pred ------------c---ee---------------------------EEEEeCCC--ceeEEEEccCCCeEEEEeccC--CC
Q 005140 503 ------------R---VS---------------------------KLTTLKGK--QANALFWSPSGRFIVLAGLKG--FN 536 (712)
Q Consensus 503 ------------~---~~---------------------------~~~~~~~~--~v~~l~~spdg~~l~~~~~~~--~d 536 (712)
. +. .++.+-+| .+.+++.||+|+++|+++... ..
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh 551 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH 551 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc
Confidence 0 00 01111223 477899999999999998643 35
Q ss_pred ceEEEEECCcceeee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee-------eeecccceeeeEE
Q 005140 537 GQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL-------YRTLKDHFFQFLW 607 (712)
Q Consensus 537 g~v~iwd~~~~~~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~-------~~~~~~~i~~~~w 607 (712)
..|++|+..+..... ..|.-.|+.++|||||+||++.+. |.++.+|....... .+.|..-||+..|
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-----DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-----DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW 626 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-----CceEEeeeeecccchhhhhccccccceEEEEccc
Confidence 679999998766655 478899999999999999999999 99999998753322 2336677999999
Q ss_pred ecCCCCCCChhhHHHHH
Q 005140 608 RPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 608 ~p~~~~l~s~~~d~~i~ 624 (712)
+|++.+++|+|.|++++
T Consensus 627 ~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVK 643 (764)
T ss_pred CcccceeEEecCCceEE
Confidence 99999999999999875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=182.55 Aligned_cols=275 Identities=17% Similarity=0.252 Sum_probs=212.5
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
....+..|+..|+.+.|+-||+|.++++.+. +++|+.. .+..+.++. |.. |..++.+.|...+++++.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~-rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD------- 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL-RGALIKTYSGHGHEVLDAALSSDNSKFASCGGD------- 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccc-ccceeeeecCCCceeeeccccccccccccCCCC-------
Confidence 4456688999999999999999999999998 7899999 889999885 443 9999999999999999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce--ecccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT--LIDKKSL 358 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~--~~~~~~~ 358 (712)
..|.+||+.+|+.++.|.+|...+. .++|+. +...+++++ |.++++||..+.. ++....-
T Consensus 81 ---k~v~vwDV~TGkv~Rr~rgH~aqVN-------------tV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 81 ---KAVQVWDVNTGKVDRRFRGHLAQVN-------------TVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred ---ceEEEEEcccCeeeeecccccceee-------------EEEecC-cceEEEeccccceeEEEEcccCCCCccchhhh
Confidence 8999999999999999999998874 799999 999999999 9999999988544 3333323
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
...+|.++..+ +..|+. |+.|+..+.
T Consensus 144 a~D~V~Si~v~--~heIva-----GS~DGtvRt----------------------------------------------- 169 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVA-----GSVDGTVRT----------------------------------------------- 169 (307)
T ss_pred hcCceeEEEec--ccEEEe-----eccCCcEEE-----------------------------------------------
Confidence 34456665554 233444 445555443
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc----
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ---- 514 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~---- 514 (712)
|+++...... --+ ..+|++++|+++|+..++++.++ +|++.|-.++. ++..+.+|.
T Consensus 170 ------ydiR~G~l~s--Dy~---g~pit~vs~s~d~nc~La~~l~s---tlrLlDk~tGk------lL~sYkGhkn~ey 229 (307)
T KOG0316|consen 170 ------YDIRKGTLSS--DYF---GHPITSVSFSKDGNCSLASSLDS---TLRLLDKETGK------LLKSYKGHKNMEY 229 (307)
T ss_pred ------EEeecceeeh--hhc---CCcceeEEecCCCCEEEEeeccc---eeeecccchhH------HHHHhccccccee
Confidence 3333211100 012 67899999999999999999999 99999988766 566666553
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
-...+++.....+++++. ||.|++||+....++..... ..++++++.|.-..++++.. +.+..|
T Consensus 230 kldc~l~qsdthV~sgSE---DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~------~~~~~~ 296 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSE---DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG------HGDLFW 296 (307)
T ss_pred eeeeeecccceeEEeccC---CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC------Cceece
Confidence 245677777888999988 99999999998887765322 23789999998887887776 455555
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=203.55 Aligned_cols=380 Identities=14% Similarity=0.173 Sum_probs=247.9
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~ 260 (712)
-+++++.|..+.++|. .+...+..|..|...++|++.+|.-.|+.|++.|- |++|++++...+...|. |.. |.+++
T Consensus 69 Wiv~GsDD~~IrVfny-nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNY-NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred eEEEecCCceEEEEec-ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 3566777788889999 78889999999999999999999999999999998 88999997788888884 555 99999
Q ss_pred ecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec
Q 005140 261 FSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG 338 (712)
Q Consensus 261 ~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~ 338 (712)
|.|. .+.+|+++-| ++|+||.+.+..+..++.+|...+. ++.+-++ |..||++++
T Consensus 148 fnPkD~ntFaS~sLD----------rTVKVWslgs~~~nfTl~gHekGVN-------------~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 148 FNPKDPNTFASASLD----------RTVKVWSLGSPHPNFTLEGHEKGVN-------------CVDYYTGGDKPYLISGA 204 (794)
T ss_pred ecCCCccceeeeecc----------ccEEEEEcCCCCCceeeeccccCcc-------------eEEeccCCCcceEEecC
Confidence 9994 5789999999 9999999988889999999987664 6777762 234999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|.+|+|||..+...+.....|..+|..+.|+|.-.+|++ |+.|++++||.- .+.+.....++.-....++.-
T Consensus 205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis-----gsEDGTvriWhs--~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS-----GSEDGTVRIWNS--KTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE-----ecCCccEEEecC--cceehhhhhhcCCceEEEEee
Confidence 999999999999999999999999999999999999999 889999887743 333222233332233333444
Q ss_pred CcCCCEEEEEEccccccccc---------ccccEEEEEEecC---------C----------cceeEEEecCCCCceEEE
Q 005140 418 QSSGDYLAVKVDRYTKTKKS---------TYTGFELFRIKER---------D----------IPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~---------~~~~~~l~~l~~~---------~----------~~~~~~~l~~h~~~v~~~ 469 (712)
.+.+..++++.+.+....+. -..+-.+|..... + .|....++-.-.-....+
T Consensus 278 ~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L 357 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTL 357 (794)
T ss_pred cCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHh
Confidence 55566666666655421100 0001122221110 0 011111111111123346
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+-||+|++++++ +|| .-.||..-. .+.-.-+....+.|++|....++-.. ++.|.++ .+++.
T Consensus 358 ~hsPNGrfV~Vc-gdG---EyiIyTala---------~RnK~fG~~~eFvw~~dsne~avRes---~~~vki~--knfke 419 (794)
T KOG0276|consen 358 AHSPNGRFVVVC-GDG---EYIIYTALA---------LRNKAFGSGLEFVWAADSNEFAVRES---NGNVKIF--KNFKE 419 (794)
T ss_pred ccCCCCcEEEEe-cCc---cEEEEEeee---------hhhcccccceeEEEcCCCCeEEEEec---CCceEEE--eccee
Confidence 778888766654 456 566665411 11111234566778887666665544 6777777 44444
Q ss_pred eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-CceeeeecccceeeeEEecCCCCCCChhhHH
Q 005140 550 MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKDHFFQFLWRPRPPSFLTPEKEE 621 (712)
Q Consensus 550 ~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~ 621 (712)
..+...... +..--.|.+|...+ ++.+++||.. |.++.++. -...++.|+-+|..++.++.+.
T Consensus 420 ~ksi~~~~~--~e~i~gg~Llg~~s------s~~~~fydW~~~~lVrrI~-v~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 420 HKSIRPDMS--AEGIFGGPLLGVRS------SDFLCFYDWESGELVRRIE-VTSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred ccccccccc--eeeecCCceEEEEe------CCeEEEEEcccceEEEEEe-eccceeEEecCCCEEEEEecCc
Confidence 433222221 11111233333333 4778888855 45554443 2344667777777666555443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=198.45 Aligned_cols=279 Identities=14% Similarity=0.276 Sum_probs=208.3
Q ss_pred CcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 205 PEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.+..+.+|...|.|++=+|.. ..+|+|+.|| |+|||+. ...++.++. |.+ |..|+++. ..+++++.|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD------ 128 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDD------ 128 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecc--cceEEecCC------
Confidence 344668999999999999987 7899999999 8899999 777777773 665 99999987 678899999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
.+|+.|.+ .|.+++++.+..... | +.-+. .+..+|+++ ..|.|||.....++.......
T Consensus 129 ----KtvK~wk~-~~~p~~tilg~s~~~---------g-----Idh~~-~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 129 ----KTVKQWKI-DGPPLHTILGKSVYL---------G-----IDHHR-KNSVFATCG-EQIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred ----cceeeeec-cCCcceeeecccccc---------c-----ccccc-ccccccccC-ceeeecccccCCccceeecCC
Confidence 89999997 556677776554322 2 22222 445667665 458999998777776666777
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
+.|.++.|+|....|+.. ++.|+. |.+||
T Consensus 188 Dti~svkfNpvETsILas----~~sDrs--IvLyD--------------------------------------------- 216 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILAS----CASDRS--IVLYD--------------------------------------------- 216 (433)
T ss_pred CceeEEecCCCcchheee----eccCCc--eEEEe---------------------------------------------
Confidence 778888888876544421 223332 33333
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANAL 518 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l 518 (712)
++.. .|...+.+ ...-+.++|+|.+-.|++++.|. +++.||++.... ++....+| .+.++
T Consensus 217 ------~R~~-~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~---nlY~~DmR~l~~-----p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 217 ------LRQA-SPLKKVIL---TMRTNTICWNPEAFNFVAANEDH---NLYTYDMRNLSR-----PLNVHKDHVSAVMDV 278 (433)
T ss_pred ------cccC-Cccceeee---eccccceecCccccceeeccccc---cceehhhhhhcc-----cchhhcccceeEEEe
Confidence 3321 22223333 44556789999888888988898 899999976543 45555554 68999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.|||.|+-+++|++ |.+|+||..+.+......| ...|.++.||.|.+||++||. |+.|++|...
T Consensus 279 dfsptG~Efvsgsy---DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd-----d~nvRlWka~ 345 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSY---DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD-----DGNVRLWKAK 345 (433)
T ss_pred ccCCCcchhccccc---cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC-----Ccceeeeecc
Confidence 99999999999999 9999999998665544433 367899999999999999999 9999999865
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=207.95 Aligned_cols=356 Identities=14% Similarity=0.210 Sum_probs=262.7
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
.+.+..+...|.++.|+|...++.++..+| +.||+.+ +...+..++.. .|++..|-+--+++++|+.|
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnye-tqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD-------- 76 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYE-TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDD-------- 76 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecc-cceeeeeeeecccchhhheeeeccceEEEecCC--------
Confidence 345666888999999999999999999888 8899999 88888888754 48999999999999999999
Q ss_pred CccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc-eecccccccc
Q 005140 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSLKV 360 (712)
Q Consensus 283 ~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~-~~~~~~~~~~ 360 (712)
..|+||+..|++.++.|..|.+-+. +++.+| ..-|+.+++ |-+|++|+.+.. .+......|.
T Consensus 77 --~~IrVfnynt~ekV~~FeAH~DyIR-------------~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 77 --MQIRVFNYNTGEKVKTFEAHSDYIR-------------SIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred --ceEEEEecccceeeEEeecccccee-------------eeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 9999999999999999999998774 789999 999999999 899999998844 3444456677
Q ss_pred cCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee--ecceeEEECcCCCEEEEEEccccccccc
Q 005140 361 ENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS--VSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 361 ~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.-|.+++|.|. .+.+|+ ++-|.+++||.+..+... .+...+. ++.+...-.++-.||+++++|.+
T Consensus 141 HyVMqv~fnPkD~ntFaS-----~sLDrTVKVWslgs~~~n--fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t----- 208 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFAS-----ASLDRTVKVWSLGSPHPN--FTLEGHEKGVNCVDYYTGGDKPYLISGADDLT----- 208 (794)
T ss_pred eEEEEEEecCCCccceee-----eeccccEEEEEcCCCCCc--eeeeccccCcceEEeccCCCcceEEecCCCce-----
Confidence 78999999996 567787 788999998877654432 2222233 33333323345569999999988
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeE
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANA 517 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 517 (712)
+.+|+...+.+ ..++.+|...|..+.|+|.-..|++|+.|| +++||+..+-.. .....+....+.+
T Consensus 209 ----iKvWDyQtk~C---V~TLeGHt~Nvs~v~fhp~lpiiisgsEDG---TvriWhs~Ty~l----E~tLn~gleRvW~ 274 (794)
T KOG0276|consen 209 ----IKVWDYQTKSC---VQTLEGHTNNVSFVFFHPELPIIISGSEDG---TVRIWNSKTYKL----EKTLNYGLERVWC 274 (794)
T ss_pred ----EEEeecchHHH---HHHhhcccccceEEEecCCCcEEEEecCCc---cEEEecCcceeh----hhhhhcCCceEEE
Confidence 89999886543 356889999999999999999999999999 999999754321 1222233457888
Q ss_pred EEEccCCCeEEEEeccCCCceEE------------------EEECCc------------------ceeeee--cccc---
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLE------------------FYNVDE------------------LETMAT--AEHF--- 556 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~------------------iwd~~~------------------~~~~~~--~~~~--- 556 (712)
++-.+.++.+++|.. .|.+. ||...+ ++.+.. ..-+
T Consensus 275 I~~~k~~~~i~vG~D---eg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~e 351 (794)
T KOG0276|consen 275 IAAHKGDGKIAVGFD---EGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVE 351 (794)
T ss_pred EeecCCCCeEEEecc---CCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccc
Confidence 888887777777654 33332 222110 111100 0000
Q ss_pred -ceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHHHH
Q 005140 557 -MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 557 -~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
....++-||+|++++.++. |.+.||..-+ +.....+.-..+.|.+++...+.-...+.|
T Consensus 352 iyPq~L~hsPNGrfV~Vcgd------GEyiIyTala--~RnK~fG~~~eFvw~~dsne~avRes~~~v 411 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGD------GEYIIYTALA--LRNKAFGSGLEFVWAADSNEFAVRESNGNV 411 (794)
T ss_pred cchHHhccCCCCcEEEEecC------ccEEEEEeee--hhhcccccceeEEEcCCCCeEEEEecCCce
Confidence 1125788999999888875 8999997421 233455777889999997766655444444
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=195.87 Aligned_cols=295 Identities=16% Similarity=0.217 Sum_probs=236.9
Q ss_pred ecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcC
Q 005140 197 WNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSS 273 (712)
Q Consensus 197 w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~ 273 (712)
|.. .-+...++++|..=|.|+++-|-.++++||+.|+ +.|||+. +++...++. |- .|..+++|+--.||++++.
T Consensus 137 WHa--pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla-tg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 137 WHA--PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA-TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred ccC--cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc-cCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 544 3456678899999999999999999999999999 7799999 888887774 54 4999999999999999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~ 352 (712)
| +.|+.||+...+.+|.+.+|-..+. ++...| .-..|++++ |.+++|||+.+...
T Consensus 214 d----------k~VKCwDLe~nkvIR~YhGHlS~V~-------------~L~lhP-Tldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 214 D----------KQVKCWDLEYNKVIRHYHGHLSGVY-------------CLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred C----------CeeEEEechhhhhHHHhccccceeE-------------EEeccc-cceeEEecCCcceEEEeeecccce
Confidence 9 9999999999999999999988763 788999 899999999 99999999998888
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
+.....|...|..+.+.|.+..+++ ++.|.++++ |++..++......-++.....+..+|.-..+++++.+..
T Consensus 270 V~~l~GH~~~V~~V~~~~~dpqvit-----~S~D~tvrl--WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dni 342 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPTDPQVIT-----GSHDSTVRL--WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNI 342 (460)
T ss_pred EEEecCCCCcceeEEeecCCCceEE-----ecCCceEEE--eeeccCceeEeeecccceeeEEecCCchhhhhccCCccc
Confidence 8788889999999999999999998 777777665 555556655555556666777788998888888877754
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEE---EE
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKL---TT 509 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~---~~ 509 (712)
+-|.+.....- ..+.+|+..|++++.+.|| ++++|+..+ .+.+||.+++-.......+ .+
T Consensus 343 ----------k~w~~p~g~f~---~nlsgh~~iintl~~nsD~-v~~~G~dng---~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 343 ----------KQWKLPEGEFL---QNLSGHNAIINTLSVNSDG-VLVSGGDNG---SIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred ----------eeccCCccchh---hccccccceeeeeeeccCc-eEEEcCCce---EEEEEecCcCcccccccccccCCc
Confidence 66766654322 2367899999999998776 566777777 8999999876432111111 11
Q ss_pred eC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 510 LK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 510 ~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+. ...|.+.+|...|..|+++.. |.+|++|.-+
T Consensus 406 l~sEagI~as~fDktg~rlit~ea---dKtIk~~keD 439 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEA---DKTIKMYKED 439 (460)
T ss_pred cccccceeEEeecccCceEEeccC---CcceEEEecc
Confidence 11 225788999999999999988 9999999765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=235.94 Aligned_cols=287 Identities=12% Similarity=0.228 Sum_probs=207.3
Q ss_pred Cc-eEEeecccCcceeeee------cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--------e
Q 005140 234 QG-AAVWGGANTFNRLMRY------AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--------V 297 (712)
Q Consensus 234 ~~-i~iw~~~~~~~~~~~~------~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--------~ 297 (712)
+| .++|+.. .......+ .|.+ |.+++|+|+|++||+++.| +.|+||++.+.. .
T Consensus 457 ~gl~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D----------~~I~iwd~~~~~~~~~~~~~~ 525 (793)
T PLN00181 457 EGLCKYLSFS-KLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVN----------KKIKIFECESIIKDGRDIHYP 525 (793)
T ss_pred hhhhhhhccc-ceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCC----------CEEEEEECCcccccccccccc
Confidence 45 4577776 44433222 2444 9999999999999999999 999999975321 1
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECC-CCCeE
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP-TDPII 375 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l 375 (712)
+..+.++. .+ . .++|++.++.+|++++ |++|++||+.+++.+.....|...|.+++|+| ++.+|
T Consensus 526 ~~~~~~~~-~v--------~-----~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 526 VVELASRS-KL--------S-----GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eEEecccC-ce--------e-----eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 11122211 11 1 5888762467899888 99999999998887777777888899999997 67888
Q ss_pred EEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCccee
Q 005140 376 SLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIE 455 (712)
Q Consensus 376 a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 455 (712)
++ ++.|+.+++|.+. +.. .+
T Consensus 592 ~S-----gs~Dg~v~iWd~~--~~~----------------------~~------------------------------- 611 (793)
T PLN00181 592 AS-----GSDDGSVKLWSIN--QGV----------------------SI------------------------------- 611 (793)
T ss_pred EE-----EcCCCEEEEEECC--CCc----------------------EE-------------------------------
Confidence 88 7777776665432 111 00
Q ss_pred EEEecCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEec
Q 005140 456 VLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 456 ~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~ 532 (712)
..+. +...+.++.|+ ++|.+|++++.|+ .|++||+++... .+..+.+| .|.++.|+ ++.+|++++.
T Consensus 612 -~~~~-~~~~v~~v~~~~~~g~~latgs~dg---~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 612 -GTIK-TKANICCVQFPSESGRSLAFGSADH---KVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred -EEEe-cCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 0011 13467788885 5799999999999 999999975432 23334333 68999997 7889999988
Q ss_pred cCCCceEEEEECCcc------eeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eee--------
Q 005140 533 KGFNGQLEFYNVDEL------ETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLY-------- 595 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~------~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~-------- 595 (712)
|+.|++||+... ..+.+ +|...++.++|+|+|.+|++++. |+.++||+.... .+.
T Consensus 681 ---D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-----D~~v~iw~~~~~~~~~s~~~~~~~ 752 (793)
T PLN00181 681 ---DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-----TNEVFVYHKAFPMPVLSYKFKTID 752 (793)
T ss_pred ---CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCEEEEEECCCCCceEEEecccCC
Confidence 999999999742 33333 56677889999999999999999 999999996522 110
Q ss_pred -------eecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 596 -------RTLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 596 -------~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
..+...|.+++|+|++..|++++.++.|+
T Consensus 753 ~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 753 PVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred cccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 11224589999999999999999988775
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=185.23 Aligned_cols=289 Identities=16% Similarity=0.227 Sum_probs=217.4
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
..+++|..+++-+.++.+|.+|.+++.|. ..||-.. +++++.++ .|.+ |.|++.+-+.++|+||+.|
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~s~~liTGSAD--------- 73 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD--------- 73 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCCcceeeecccc---------
Confidence 35789999999999999999999999999 5599887 78888888 4665 9999999999999999999
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec------CCeEEEEEcCCc-------
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------KNMISVYETESF------- 350 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~------d~~i~iwd~~~~------- 350 (712)
.++++||+.+|+.+..++...... .+.|++ +|++++.+. .+.|.+++++..
T Consensus 74 -~t~kLWDv~tGk~la~~k~~~~Vk--------------~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 74 -QTAKLWDVETGKQLATWKTNSPVK--------------RVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred -ceeEEEEcCCCcEEEEeecCCeeE--------------EEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 899999999999999998765543 589999 999888776 367999998732
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
.++.+...+...++..-|+|-+.+|++ +...+.|..|+..++. .+.....+...+..+.++++..++++++.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~-------Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIA-------GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEE-------ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc
Confidence 223333344466899999999999998 4445566677777753 44455566667778889999999999999
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc------
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR------ 503 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~------ 503 (712)
|.+ ..+|++..-... .+... ..||++.+++|...+++.+++.... .|.-=+.+.++...+
T Consensus 211 Dtt---------akl~D~~tl~v~-Kty~t---e~PvN~aaisP~~d~VilgGGqeA~-dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 211 DTT---------AKLVDVRTLEVL-KTYTT---ERPVNTAAISPLLDHVILGGGQEAM-DVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred Ccc---------ceeeeccceeeE-EEeee---cccccceecccccceEEecCCceee-eeeeecccccchhhhHHHHHH
Confidence 877 577776643221 11222 6799999999988888887764311 222222222222111
Q ss_pred eeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 504 VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 504 ~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
...+..+.+| +|++++|+|+|+..++|+. ||.|++.-++
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGksYsSGGE---DG~VR~h~Fd 317 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGKSYSSGGE---DGYVRLHHFD 317 (327)
T ss_pred HHHhccccccccCcceeEECCCCcccccCCC---CceEEEEEec
Confidence 1234455555 8999999999999999998 9999987544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=197.62 Aligned_cols=276 Identities=17% Similarity=0.238 Sum_probs=213.3
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.+.|..|||||+||++|+.| |-|.+||..+|+..+.++......-.-...++. |+.||. |...+
T Consensus 215 h~EcA~FSPDgqyLvsgSvD----------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-----ci~FSR-DsEMl 278 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVD----------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-----CISFSR-DSEML 278 (508)
T ss_pred chhheeeCCCCceEeecccc----------ceeeeehhccchhhhhhhhhhhcceeecccceE-----EEeecc-cHHHh
Confidence 48999999999999999999 999999999998766654432211000111111 789999 99999
Q ss_pred EEec-CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 335 AKLG-KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|+++ ||.|++|.+.+|..+.... .|..+|+++.||.|+..+++ ++.|..++|.-+
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS-----~sfD~tvRiHGl------------------ 335 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS-----ASFDQTVRIHGL------------------ 335 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhc-----ccccceEEEecc------------------
Confidence 9999 9999999999999987764 68889999999999999988 777776664211
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
..|+. ..++.+|...|+...|+++|+++++++.|+ +|++
T Consensus 336 ------KSGK~--------------------------------LKEfrGHsSyvn~a~ft~dG~~iisaSsDg---tvkv 374 (508)
T KOG0275|consen 336 ------KSGKC--------------------------------LKEFRGHSSYVNEATFTDDGHHIISASSDG---TVKV 374 (508)
T ss_pred ------ccchh--------------------------------HHHhcCccccccceEEcCCCCeEEEecCCc---cEEE
Confidence 11111 134668999999999999999999999999 9999
Q ss_pred EEeecccccCceeEEEEeC----CCceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEE
Q 005140 493 YSMRTAQHAGRVSKLTTLK----GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVE 562 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~----~~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~ 562 (712)
|+.++.. .+.++. ..+|+++..-|.. ..++++.. .++|+|.++. |+++.+ ...+...+.+
T Consensus 375 W~~Ktte------C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---sntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 375 WHGKTTE------CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCcchh------hhhhccCCCCcccceeEEEcCCCCceEEEEcC---CCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 9997755 333333 2267887777754 46667766 7899999998 555544 2335667889
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHHH
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAK 625 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~ 625 (712)
.||.|.|+.+.+. |+.++.+.+. |.+-... |...+..++-+|..+.|++-++|+.++-
T Consensus 445 lSpkGewiYcigE-----D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 445 LSPKGEWIYCIGE-----DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred ecCCCcEEEEEcc-----CcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 9999999999999 9999999876 5554443 5567888999999999999999998763
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=210.50 Aligned_cols=266 Identities=17% Similarity=0.278 Sum_probs=210.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCC-eeEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQ-VKLI 259 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~-v~~i 259 (712)
.+++.. ...+.+|+. ..+.......-+...|+++.|+++|++||.|..+| |.|||.. ..+.+..+. |.. |.++
T Consensus 190 ~laVal-g~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred eEEEEe-cceEEEEec-CCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccccccCCcCceeEEE
Confidence 344444 345669998 34444444444478999999999999999999999 7799998 666665552 444 9999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
+|+ +..+.+|+.+ +.|..+|++..+.... +.+|...+. .++|++ |+.++|+++
T Consensus 267 aW~--~~~lssGsr~----------~~I~~~dvR~~~~~~~~~~~H~qeVC-------------gLkws~-d~~~lASGg 320 (484)
T KOG0305|consen 267 AWN--SSVLSSGSRD----------GKILNHDVRISQHVVSTLQGHRQEVC-------------GLKWSP-DGNQLASGG 320 (484)
T ss_pred ecc--CceEEEecCC----------CcEEEEEEecchhhhhhhhcccceee-------------eeEECC-CCCeeccCC
Confidence 998 6788999999 9999999988876554 777877763 589999 999999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMY 416 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (712)
|+.+.|||......+.....|...|..++|+|- ...||+ |++.....|.+|+..+...+.... ....++.+.
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs-----GGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~ 394 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT-----GGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLI 394 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE-----cCCCcccEEEEEEcCCCcEecccc-cCCceeeEE
Confidence 999999999766666666678889999999996 667887 777777888888887766555443 455778899
Q ss_pred ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 417 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 417 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
|++..+-|+++..... ..+.||...... ....+.+|...|..++|||||..+++++.|. +++||++-
T Consensus 395 Wsk~~kEi~sthG~s~-------n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE---Tlrfw~~f 461 (484)
T KOG0305|consen 395 WSKKYKELLSTHGYSE-------NQITLWKYPSMK---LVAELLGHTSRVLYLALSPDGETIVTGAADE---TLRFWNLF 461 (484)
T ss_pred EcCCCCEEEEecCCCC-------CcEEEEeccccc---eeeeecCCcceeEEEEECCCCCEEEEecccC---cEEecccc
Confidence 9999998888655432 247899886522 3356779999999999999999999999999 99999984
Q ss_pred c
Q 005140 497 T 497 (712)
Q Consensus 497 ~ 497 (712)
.
T Consensus 462 ~ 462 (484)
T KOG0305|consen 462 D 462 (484)
T ss_pred C
Confidence 3
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=199.65 Aligned_cols=284 Identities=14% Similarity=0.200 Sum_probs=208.8
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeec--CCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.....+..|.+.|..+.|-++...|++|+.|. |.+|+.. ..+ .+.++. ..+|+++.|.++++++++.+.|
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~-~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d---- 240 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVL-GEKSELISTLAGSLGNITSIDFDSDNKHVIAASND---- 240 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcc-cchhhhhhhhhccCCCcceeeecCCCceEEeecCC----
Confidence 34456788999999999999989999999999 7799987 333 333332 3359999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+.+++|++..++...++.+|.+.++ ++.|.- ....+++++ |.+|++||+.........
T Consensus 241 ------~~~r~Wnvd~~r~~~TLsGHtdkVt-------------~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~- 299 (459)
T KOG0288|consen 241 ------KNLRLWNVDSLRLRHTLSGHTDKVT-------------AAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTV- 299 (459)
T ss_pred ------Cceeeeeccchhhhhhhccccccee-------------eehhhc-cccceeeccccchhhhhhhhhhheeccc-
Confidence 8999999999999999999998874 567776 666688888 999999999875544222
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
+....+.++..+ ...+++ +..|+.
T Consensus 300 l~~S~cnDI~~~--~~~~~S-----gH~Dkk------------------------------------------------- 323 (459)
T KOG0288|consen 300 LPGSQCNDIVCS--ISDVIS-----GHFDKK------------------------------------------------- 323 (459)
T ss_pred cccccccceEec--ceeeee-----cccccc-------------------------------------------------
Confidence 233334444443 122222 223333
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeE
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANA 517 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 517 (712)
+++|+++.... ...+.+ .+.|+++..+++|..+.+++.|. ++.+.|+++......+.......++..+.
T Consensus 324 ----vRfwD~Rs~~~-~~sv~~---gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 324 ----VRFWDIRSADK-TRSVPL---GGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred ----eEEEeccCCce-eeEeec---CcceeeEeeccCCeEEeeecCCC---ceeeeecccccEEEEeeccccccccccce
Confidence 34455443221 112333 56999999999999999998888 89999997654221111111111335788
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeee---cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+.|||+|.|+++|+. ||.|+||++.++++... .+ +..|++++|+|.|.++++++. +..+.+|.
T Consensus 393 vvfSpd~~YvaAGS~---dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk-----~~~v~lW~ 459 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSA---DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK-----QKAVTLWT 459 (459)
T ss_pred eEECCCCceeeeccC---CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC-----CcceEecC
Confidence 999999999999998 99999999999888664 22 236999999999999999999 88999983
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-23 Score=212.65 Aligned_cols=246 Identities=17% Similarity=0.272 Sum_probs=178.5
Q ss_pred cc-CCCcccceEEEcCCCcEEEEEecCc-eEEeeccc------------------------------C-c---c------
Q 005140 209 YK-RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN------------------------------T-F---N------ 246 (712)
Q Consensus 209 ~~-~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~------------------------------~-~---~------ 246 (712)
++ .|.+.|.++.||+||+|||+|+.|+ |+||.+.. . . .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 35 8999999999999999999999999 67997652 0 0 0
Q ss_pred -------------------eeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC
Q 005140 247 -------------------RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA 305 (712)
Q Consensus 247 -------------------~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~ 305 (712)
+++.| +|. .|.+|.||.++ +|++++.| .+|++|++....+|+.|....
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMD----------KTVRLWh~~~~~CL~~F~Hnd 410 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMD----------KTVRLWHPGRKECLKVFSHND 410 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEecccc----------ccEEeecCCCcceeeEEecCC
Confidence 00011 133 48999999764 89999999 999999999999999997554
Q ss_pred cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 306 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
- ++ |++|+|.|++||++|+ |+.++||++...+++.-.-++ .-|++++|+|+|+..++ |+
T Consensus 411 f-VT-------------cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avI-----Gt 470 (712)
T KOG0283|consen 411 F-VT-------------CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVI-----GT 470 (712)
T ss_pred e-eE-------------EEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEE-----EE
Confidence 4 33 8999998889999999 999999999987766433333 45999999999999998 66
Q ss_pred CCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC
Q 005140 385 GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 464 (712)
Q Consensus 385 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~ 464 (712)
-++.++++ +....+ +.. -+.+...... .. .|.
T Consensus 471 ~~G~C~fY--~t~~lk-----------------------~~~-----------------~~~I~~~~~K----k~-~~~- 502 (712)
T KOG0283|consen 471 FNGYCRFY--DTEGLK-----------------------LVS-----------------DFHIRLHNKK----KK-QGK- 502 (712)
T ss_pred eccEEEEE--EccCCe-----------------------EEE-----------------eeeEeeccCc----cc-cCc-
Confidence 66655543 222111 100 0111110000 01 223
Q ss_pred ceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----ceeEEEEccCCCeEEEEeccCCCceE
Q 005140 465 KIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 465 ~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
.|+.+.|.| +...+++.++|. .|+|||.++.. ++..+.+. .-....|+.||++|++++. |..|
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDS---rIRI~d~~~~~------lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se---Ds~V 570 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDS---RIRIYDGRDKD------LVHKFKGFRNTSSQISASFSSDGKHIVSASE---DSWV 570 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCC---ceEEEeccchh------hhhhhcccccCCcceeeeEccCCCEEEEeec---CceE
Confidence 899999998 445688888998 99999996544 44444432 2356789999999999998 9999
Q ss_pred EEEECC
Q 005140 540 EFYNVD 545 (712)
Q Consensus 540 ~iwd~~ 545 (712)
++|+++
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999985
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=193.30 Aligned_cols=285 Identities=14% Similarity=0.209 Sum_probs=213.8
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCc-ceeeeecCC--CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF-NRLMRYAHP--QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~-~~~~~~~~~--~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I 287 (712)
...|++|+|+|.-.+|.+++.++ ++||.+++.. ..+..++.. .|.+.+|+|+|. .+++++.. ..+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr----------ky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR----------KYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc----------eEE
Confidence 46799999999999999999999 7899776332 344444433 499999999999 78888877 789
Q ss_pred EEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCee
Q 005140 288 NIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 288 ~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
..||+.+++.. ....++.... ...+..|+ ++++|+..+ .|.|.+....++.++....+ .+.|.
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~------------~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~ 348 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKS------------MERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVS 348 (514)
T ss_pred EEeeccccccccccCCCCcccch------------hheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeee-ccEEe
Confidence 99999888743 3333333211 11578899 999999999 99999999998888765422 23489
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
++.|+.+++.|+. + ++.+.||.|++.....+.. |.-+|.
T Consensus 349 ~~~fsSdsk~l~~-----~--~~~GeV~v~nl~~~~~~~r------------f~D~G~---------------------- 387 (514)
T KOG2055|consen 349 DFTFSSDSKELLA-----S--GGTGEVYVWNLRQNSCLHR------------FVDDGS---------------------- 387 (514)
T ss_pred eEEEecCCcEEEE-----E--cCCceEEEEecCCcceEEE------------EeecCc----------------------
Confidence 9999999998887 3 3344788888765432211 211111
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEcc
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSP 522 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~sp 522 (712)
-.-+++|.|++|.+||+|+..| -|.|||.++.-....-+++..+.+ ..|+++.|+|
T Consensus 388 -------------------v~gts~~~S~ng~ylA~GS~~G---iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 388 -------------------VHGTSLCISLNGSYLATGSDSG---IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred -------------------cceeeeeecCCCceEEeccCcc---eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 1224578889999999999999 999999765433333446666553 3689999999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
|++.|+.++... ...+++..+.+..+... ...+.++|++|||.|.|+|.|.. ++.+.+|.+.
T Consensus 446 d~qiLAiaS~~~-knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe-----~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVK-KNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE-----AGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhcc-ccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC-----CCceeeEeec
Confidence 999999998655 78899998887766653 23378999999999999999999 8999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=200.71 Aligned_cols=396 Identities=13% Similarity=0.192 Sum_probs=287.4
Q ss_pred EEECCeeEEEecCCCCCCC----cccccCCCcccceEEEcCCC--cEEEEEecCc-eEEeecccCcceeeeecCC--Cee
Q 005140 187 IRSGTDTEVLWNDARHLKP----EPVYKRSYWTESFVQWSPLG--TYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVK 257 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~~~~~----~~~~~~~~~~v~~v~~Spdg--~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~ 257 (712)
....++.+.+|+......+ ...++.....++++ ++|.- +-|+.|+.+| +.||++. +.+.+.++.+- .|+
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvr-t~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVR-TGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEec-cCcEEEEeccccccee
Confidence 3344566779987332111 11122222225544 45542 3467778887 9999999 99999998643 499
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
++.=+|-=..+|.|..+ |+|.|++++.++.+.+|+...+.++ .++|.. ||..+...
T Consensus 207 ~ieqsPaLDVVaiG~~~----------G~ViifNlK~dkil~sFk~d~g~Vt-------------slSFrt-DG~p~las 262 (910)
T KOG1539|consen 207 AIEQSPALDVVAIGLEN----------GTVIIFNLKFDKILMSFKQDWGRVT-------------SLSFRT-DGNPLLAS 262 (910)
T ss_pred EeccCCcceEEEEeccC----------ceEEEEEcccCcEEEEEEcccccee-------------EEEecc-CCCeeEEe
Confidence 99999999999999999 9999999999999999998766654 799999 99865544
Q ss_pred c--CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeeeeeeecc
Q 005140 338 G--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSD 412 (712)
Q Consensus 338 ~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~ 412 (712)
+ .|.+.+||++..+++.... .|.++|....|.|....+++ ++.|+..++|++|.+.+ +.++....|..+.
T Consensus 263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~t-----a~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVT-----AGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEee-----ccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 4 7999999999887766543 67788999999999999998 88999999999997665 4566666666666
Q ss_pred eeEEEC-cCCCEEEEEEcccccccccc-----------------------c-----------------------------
Q 005140 413 CKMYWQ-SSGDYLAVKVDRYTKTKKST-----------------------Y----------------------------- 439 (712)
Q Consensus 413 ~~~~~s-~~g~~l~~~~~~~~~~~~~~-----------------------~----------------------------- 439 (712)
..+.|. .+|.++..+..|.+-...+. .
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 666554 66777776665543110000 0
Q ss_pred ----ccEEEEEEecCCcceeEEE---ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC
Q 005140 440 ----TGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 512 (712)
Q Consensus 440 ----~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 512 (712)
.....|+++.+......+. +..-...+++++.+++|++.+.|+..| .|.+|+++++-....+. -...+.
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G---~Id~fNmQSGi~r~sf~-~~~ah~ 493 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG---TIDRFNMQSGIHRKSFG-DSPAHK 493 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC---eEEEEEcccCeeecccc-cCcccc
Confidence 0123344433222111111 111136788999999999999999888 99999998875321110 001224
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
.+|..++...-++.+++++. +|.+.+||+.+..++.+.. ...++.+..+.....+|.+.. |-.|+++|...
T Consensus 494 ~~V~gla~D~~n~~~vsa~~---~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d-----df~I~vvD~~t 565 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGA---DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD-----DFSIRVVDVVT 565 (910)
T ss_pred CceeEEEecCCCceEEEccC---cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC-----ceeEEEEEchh
Confidence 47899999888999999998 9999999999877666533 356788888888888999998 89999999886
Q ss_pred ceeeee---cccceeeeEEecCCCCCCChhhHHHHHH
Q 005140 592 KLLYRT---LKDHFFQFLWRPRPPSFLTPEKEEEIAK 625 (712)
Q Consensus 592 ~~~~~~---~~~~i~~~~w~p~~~~l~s~~~d~~i~~ 625 (712)
..+.+. |.++|+++.|||+|++|++++.|++||.
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 655433 7799999999999999999999998874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=192.15 Aligned_cols=277 Identities=13% Similarity=0.196 Sum_probs=209.8
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee----ee----------------ecCCCeeEEEecCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL----MR----------------YAHPQVKLIDFSPG 264 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~----~~----------------~~~~~v~~i~~Spd 264 (712)
...+..|+-++.|+++|||++++.+++.++ |.=|+.. +++.. .+ .|...+.+++.|||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~-tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVL-TGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehh-cCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 345678999999999999999999999999 6688776 33311 11 11223899999999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~ 343 (712)
|+|||+|+.+ ..|.||+..+++.++.|++|.+.+. +++|-. ...-+++++ |.+++
T Consensus 214 gkylatgg~d----------~~v~Iw~~~t~ehv~~~~ghr~~V~-------------~L~fr~-gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 214 GKYLATGGRD----------RHVQIWDCDTLEHVKVFKGHRGAVS-------------SLAFRK-GTSELYSASADRSVK 269 (479)
T ss_pred CcEEEecCCC----------ceEEEecCcccchhhccccccccee-------------eeeeec-CccceeeeecCCceE
Confidence 9999999999 8999999999999999999998874 678876 445555555 99999
Q ss_pred EEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE
Q 005140 344 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
+|+++....+...-.|...|.++.-..-.+.+.+ |+.|.+.++|.+ +. ...
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV-----GgrDrT~rlwKi--~e----------------------esq 320 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV-----GGRDRTVRLWKI--PE----------------------ESQ 320 (479)
T ss_pred EEehhHhHHHHHHhCCccceeeechhcccceEEe-----ccccceeEEEec--cc----------------------cce
Confidence 9999988888888789899999988877888777 777777776653 11 001
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
+.+.+|.+.+-|++|- +...|++|+.+| .|.+|++........
T Consensus 321 ---------------------------------lifrg~~~sidcv~~I-n~~HfvsGSdnG---~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 321 ---------------------------------LIFRGGEGSIDCVAFI-NDEHFVSGSDNG---SIALWSLLKKKPLFT 363 (479)
T ss_pred ---------------------------------eeeeCCCCCeeeEEEe-cccceeeccCCc---eEEEeeecccCceeE
Confidence 2223556777888886 567889999999 999999976542100
Q ss_pred eeEEEE-eCCC-------ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc----eeeeec-cccceeeEEECCCCCEE
Q 005140 504 VSKLTT-LKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL----ETMATA-EHFMATDVEWDPTGRYV 570 (712)
Q Consensus 504 ~~~~~~-~~~~-------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~----~~~~~~-~~~~v~~~~~spdg~~l 570 (712)
....+. .+.. .|++++..|...++++|+. +|.|++|-+..+ .++... -.+.|++++|+++|++|
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~---~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW---SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRI 440 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCC---CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEE
Confidence 000010 1111 5788999999999999998 999999998855 333332 34789999999999988
Q ss_pred EEEEcc
Q 005140 571 ATAVTS 576 (712)
Q Consensus 571 ~t~s~~ 576 (712)
++|...
T Consensus 441 vagiGk 446 (479)
T KOG0299|consen 441 VAGIGK 446 (479)
T ss_pred EEeccc
Confidence 888763
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-21 Score=189.80 Aligned_cols=315 Identities=16% Similarity=0.280 Sum_probs=219.1
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
-+.+.|||-|.||+|.... | |.+|--.+-..++.|..+... .+.||| +.+||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~----------G-I~lWGG~~f~r~~RF~Hp~Vq---------------~idfSP-~EkYLV 265 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ----------G-IALWGGESFDRIQRFYHPGVQ---------------FIDFSP-NEKYLV 265 (698)
T ss_pred eeeEEecCCceEEEEEecc----------c-eeeecCccHHHHHhccCCCce---------------eeecCC-ccceEE
Confidence 5789999999999999988 5 889987666677777655433 589999 999999
Q ss_pred Eec------C------CeEEEEEcCCceeccccccccc---CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 336 KLG------K------NMISVYETESFTLIDKKSLKVE---NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 336 ~~~------d------~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+-+ + ..+.|||+.+|.+......... .-.-+.||.|++++|..+. -.|.+|+.++..
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--------~sisIyEtpsf~ 337 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--------NSISIYETPSFM 337 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--------ceEEEEecCcee
Confidence 876 1 5799999999987765433112 2346799999999997422 347889999888
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.+..+.+.-..+..+.|+|.+..||+-+.... .....+.|..+.... .+....+ |+-.-..+.|-.+|.+||+
T Consensus 338 lld~Kslki~gIr~FswsP~~~llAYwtpe~~----~~parvtL~evPs~~-~iRt~nl--fnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 338 LLDKKSLKISGIRDFSWSPTSNLLAYWTPETN----NIPARVTLMEVPSKR-EIRTKNL--FNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred eecccccCCccccCcccCCCcceEEEEccccc----CCcceEEEEecCccc-eeeeccc--eeeeccEEEeccCCcEEEE
Confidence 77777776677778899999999998766433 111123333333221 1111111 1222334789999999998
Q ss_pred EEcCC-------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc----ce
Q 005140 481 IHGDS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE----LE 548 (712)
Q Consensus 481 ~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~----~~ 548 (712)
-.... ...++.||.++.... ++..+. ...+-.++|-|.|..+++.+......++.+|.+.+ .+
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdI-----pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDI-----PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCC-----CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 65432 223577787765543 444444 34688999999999887766444467899998872 33
Q ss_pred eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEecCCCCCCChhh
Q 005140 549 TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 549 ~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
++.......++.+.|||.|++++.+... +..+.+..+|.+- ...... .....+.+.|.|.|+++++++.
T Consensus 486 lVk~~dk~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSPKGRFVVVAALV--SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhhcccccceEEEcCCCcEEEEEEec--ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 4445666788899999999999988762 1267888898773 222222 2345778999999999998763
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-21 Score=176.96 Aligned_cols=263 Identities=16% Similarity=0.239 Sum_probs=202.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|.++.||++|.+|++++.| .+++|||..+|+.++++..++-.+. .++|.. ....+
T Consensus 16 ~i~sl~fs~~G~~litss~d----------Dsl~LYd~~~g~~~~ti~skkyG~~-------------~~~Fth-~~~~~ 71 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSED----------DSLRLYDSLSGKQVKTINSKKYGVD-------------LACFTH-HSNTV 71 (311)
T ss_pred ceeEEEecCCCCEEEEecCC----------CeEEEEEcCCCceeeEeeccccccc-------------EEEEec-CCceE
Confidence 49999999999999999888 7999999999999999988754432 577877 55544
Q ss_pred EEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 335 AKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 335 a~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
..++ |.+|+.-++.+.+.+.-...|...|..++.+|-+..+++ ++.|.++++|.+..+.
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS-----~S~D~tvrLWDlR~~~------------- 133 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLS-----SSLDKTVRLWDLRVKK------------- 133 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEe-----cccCCeEEeeEecCCC-------------
Confidence 4444 899999999999999888899999999999999888887 7777777766554321
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
.+.. +. ...-...||.|.|-.||++.+.. .|+
T Consensus 134 ----------------------------------------cqg~-l~----~~~~pi~AfDp~GLifA~~~~~~---~Ik 165 (311)
T KOG1446|consen 134 ----------------------------------------CQGL-LN----LSGRPIAAFDPEGLIFALANGSE---LIK 165 (311)
T ss_pred ----------------------------------------CceE-Ee----cCCCcceeECCCCcEEEEecCCC---eEE
Confidence 1100 01 11222468999999999998876 899
Q ss_pred EEEeecccccCceeEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc----c-ceeeE
Q 005140 492 FYSMRTAQHAGRVSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH----F-MATDV 561 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~----~-~v~~~ 561 (712)
+||++.-... +..++. ....+.+.|||||++++++.. .+.+++.|.-+|.++.+... . -..+.
T Consensus 166 LyD~Rs~dkg----PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 166 LYDLRSFDKG----PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred EEEecccCCC----CceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 9999875332 333332 225788999999999999987 89999999988887765221 1 22478
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEec-Cceeeee---cccceeeeEEecCCCCCCChhh
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT---LKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~---~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
+|+|||++|++++. |+.+.+|++. |..+... +...+.++.|.|.-..++|++.
T Consensus 239 ~ftPds~Fvl~gs~-----dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSD-----DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred EECCCCcEEEEecC-----CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 99999999999999 9999999987 5554433 4578888999999888888764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-23 Score=184.07 Aligned_cols=272 Identities=14% Similarity=0.213 Sum_probs=217.8
Q ss_pred cCCCeeEEEecC---CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 AHPQVKLIDFSP---GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 ~~~~v~~i~~Sp---dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
|...|..++||| +|-+|++++.| +.-.+=+-.+|.-+.+|.+|++.+ |. .....
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd----------~~pmlr~g~tgdwigtfeghkgav------------w~-~~l~~ 69 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKD----------GKPMLRNGDTGDWIGTFEGHKGAV------------WS-ATLNK 69 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccC----------CCchhccCCCCCcEEeeeccCcce------------ee-eecCc
Confidence 344589999985 89999999999 666666778999999999999887 75 55555
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
+-...|+++ |-+-+|||.-+|..+... .|..-|..++|+.|.++|++ |+.+.-.+|+
T Consensus 70 -na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~llt-----gg~ekllrvf--------------- 127 (334)
T KOG0278|consen 70 -NATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLT-----GGQEKLLRVF--------------- 127 (334)
T ss_pred -hhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhc-----cchHHHhhhh---------------
Confidence 666677777 999999999998877554 34445888899998888887 5554444433
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
++.....| ..++.+|.+.|..+.|....+.|++++.|+
T Consensus 128 --------------------------------------dln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~-- 165 (334)
T KOG0278|consen 128 --------------------------------------DLNRPKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDK-- 165 (334)
T ss_pred --------------------------------------hccCCCCC--chhhcCCCCcceeEEEeccCceEEeeccCC--
Confidence 33322222 245668999999999999889999988888
Q ss_pred CeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc-cceeeEEECC
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDP 565 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~sp 565 (712)
+|++||.+++. .+.++. .++++++.+|++|++|.++. .+.|.+||..+..++..... ..|.+.+.+|
T Consensus 166 -tVRLWD~rTgt------~v~sL~~~s~VtSlEvs~dG~ilTia~----gssV~Fwdaksf~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 166 -TVRLWDHRTGT------EVQSLEFNSPVTSLEVSQDGRILTIAY----GSSVKFWDAKSFGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred -ceEEEEeccCc------EEEEEecCCCCcceeeccCCCEEEEec----CceeEEeccccccceeeccCccccccccccC
Confidence 99999999876 556655 66899999999999998876 68999999999999887554 6789999999
Q ss_pred CCCEEEEEEccceeccccEEEEEec-Cceee---eecccceeeeEEecCCCCCCChhhHHHHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFN-GKLLY---RTLKDHFFQFLWRPRPPSFLTPEKEEEIAKN 626 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~---~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~ 626 (712)
+..++++|+. |..++.||+. |..+. +.|.++|.++.|+|+|...+++|+|++||-|
T Consensus 235 ~k~~fVaGge-----d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGE-----DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCc-----ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 9999999999 8999999987 44333 4477999999999999999999999999844
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=166.29 Aligned_cols=274 Identities=16% Similarity=0.299 Sum_probs=197.9
Q ss_pred eeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc------cCCc---------eeeeccCCCccccc
Q 005140 247 RLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV------RTGK---------VMRDFKGSADEFAV 310 (712)
Q Consensus 247 ~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~------~~g~---------~~~~~~~~~~~~~~ 310 (712)
.+..+.. +.|.+++|+|.|...+.|+.. .+++|--. +.+. ..+.-+.|.+.+
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsns----------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsi-- 92 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNS----------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSI-- 92 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCC----------ceEEEEccccccCcccccccccCCCeEEeeeccccCccE--
Confidence 3444433 359999999999999999887 67776532 1111 112233344443
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC--Cceecc---cccccccCeeeEEECCC----CCeEEEEee
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE--SFTLID---KKSLKVENVMDFSWSPT----DPIISLFVP 380 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~--~~~~~~---~~~~~~~~v~~~~~sp~----~~~la~~~~ 380 (712)
+ |.+||| +|.+||+++ |++|++.-.+ +.+... ....|.+.|.+++|-.+ +.+|++
T Consensus 93 ----------y-c~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s--- 157 (350)
T KOG0641|consen 93 ----------Y-CTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS--- 157 (350)
T ss_pred ----------E-EEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe---
Confidence 2 789999 999999999 9999986544 333322 23456677888888544 445553
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
++-+..+|++-+....+.+ ..+.
T Consensus 158 ---~gagdc~iy~tdc~~g~~~------------------------------------------------------~a~s 180 (350)
T KOG0641|consen 158 ---AGAGDCKIYITDCGRGQGF------------------------------------------------------HALS 180 (350)
T ss_pred ---cCCCcceEEEeecCCCCcc------------------------------------------------------eeec
Confidence 2444555555443322211 2344
Q ss_pred CCCCceEEE-EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------CCceeEEEEccCCCeEEEE
Q 005140 461 NKNDKIIAF-AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLA 530 (712)
Q Consensus 461 ~h~~~v~~~-~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~~~ 530 (712)
+|.+.|.++ .| +|-.|++++.|. +|++||++-.. .+.++. ...|.+++..|.|+.|+++
T Consensus 181 ghtghilalysw--n~~m~~sgsqdk---tirfwdlrv~~------~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 181 GHTGHILALYSW--NGAMFASGSQDK---TIRFWDLRVNS------CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCcccEEEEEEe--cCcEEEccCCCc---eEEEEeeeccc------eeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 777777765 45 688999999999 99999997533 233222 2357889999999999999
Q ss_pred eccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee-------eecccc
Q 005140 531 GLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY-------RTLKDH 601 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~-------~~~~~~ 601 (712)
-. |....+||++.++.+.. .|...|.++.|||...|+++++. |..|++-|++|.+.. ..|.+.
T Consensus 250 ~~---dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy-----d~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 250 HA---DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY-----DMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred cC---CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc-----cceEEEeecccchhhcCceEEEEeccCc
Confidence 88 99999999999998876 45588999999999999999999 999999999987543 347789
Q ss_pred eeeeEEecCCCCCCChhhHHHH
Q 005140 602 FFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 602 i~~~~w~p~~~~l~s~~~d~~i 623 (712)
+.++.|+|+.-.+++.+.|++.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred eEEEEecCccceeeeccCcceE
Confidence 9999999999888888887654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=176.02 Aligned_cols=272 Identities=15% Similarity=0.262 Sum_probs=196.6
Q ss_pred ceEEEcC--CCcE-EEEEe-----cCc-eEEeecccCcc---eeeeecC-CCeeEEEecCC-CCEEEEEcCCCCCCCcCC
Q 005140 217 SFVQWSP--LGTY-LATVH-----RQG-AAVWGGANTFN---RLMRYAH-PQVKLIDFSPG-EKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 217 ~~v~~Sp--dg~~-lat~~-----~~~-i~iw~~~~~~~---~~~~~~~-~~v~~i~~Spd-g~~l~t~s~d~~~~~~~~ 282 (712)
.+++||| .+++ +|++. +.| +.|-+.. ..+ ....+.. .++..++||++ ...+++++.|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD-------- 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD-------- 82 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCCCcceEEEEecC--------
Confidence 5689999 3443 22222 233 5676664 233 3334443 45999999996 5788899999
Q ss_pred CccEEEEEEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 283 NRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 283 ~~~~I~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
|+++|||+. ...+++.++.|...+. ++.|++.++..+++++ |++|++|+....+.+.....|.
T Consensus 83 --GSLrl~d~~~~s~Pi~~~kEH~~EV~-------------Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 83 --GSLRLFDLTMPSKPIHKFKEHKREVY-------------SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN 147 (311)
T ss_pred --ceEEEeccCCCCcchhHHHhhhhheE-------------EeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence 999999963 2357899999988873 5788773444566667 9999999998777776666777
Q ss_pred cCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 361 ENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 361 ~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
.-|....|||. .+.+++ +++|+..++|.+
T Consensus 148 ~~Iy~a~~sp~~~nlfas-----~Sgd~~l~lwdv--------------------------------------------- 177 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFAS-----ASGDGTLRLWDV--------------------------------------------- 177 (311)
T ss_pred cEEEEEecCCCCCCeEEE-----ccCCceEEEEEe---------------------------------------------
Confidence 77888888886 455565 566666555543
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--cee
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QAN 516 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~ 516 (712)
+..+.+ +.++.|...|.++.|+. +-..+++++.|+ .|+.||++.... ++..+.+| .|.
T Consensus 178 --------r~~gk~---~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~wDir~~r~-----pl~eL~gh~~AVR 238 (311)
T KOG0277|consen 178 --------RSPGKF---MSIEAHNSEILCCDWSKYNHNVLATGGVDN---LVRGWDIRNLRT-----PLFELNGHGLAVR 238 (311)
T ss_pred --------cCCCce---eEEEeccceeEeecccccCCcEEEecCCCc---eEEEEehhhccc-----cceeecCCceEEE
Confidence 333222 22456788999999998 455667777788 999999987553 56777666 689
Q ss_pred EEEEccCC-CeEEEEeccCCCceEEEEECCcceee-e--eccccceeeEEECC-CCCEEEEEEccceeccccEEEEEe
Q 005140 517 ALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETM-A--TAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 517 ~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~-~--~~~~~~v~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+.|||.. ..|+++++ |-+++|||.....-. . ..|..-+..+.||+ ++.++|+++- |..++||+.
T Consensus 239 kvk~Sph~~~lLaSasY---DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW-----De~l~Vw~p 308 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASY---DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW-----DELLYVWNP 308 (311)
T ss_pred EEecCcchhhHhhhccc---cceEEecccccchhhhhhhhccceEEeccccccccCceeeeccc-----ccceeeecc
Confidence 99999975 57788888 999999998843322 2 25557788899998 5679999999 999999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=186.78 Aligned_cols=300 Identities=15% Similarity=0.269 Sum_probs=220.3
Q ss_pred CcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 244 TFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 244 ~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
..+.+..+.|++ |.++... +++|++|+.| |.++|||. .|+....+.+|...+.
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYD----------g~~riWd~-~Gk~~~~~~Ght~~ik------------- 148 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYD----------GTSRIWDL-KGKSIKTIVGHTGPIK------------- 148 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecC----------CeeEEEec-CCceEEEEecCCccee-------------
Confidence 334455555666 8888887 7899999999 99999995 8999999999988762
Q ss_pred eEEecCCC--CCEEEEec-CCeEEEEEcCCceec----ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 323 VFRWGGGK--DKYFAKLG-KNMISVYETESFTLI----DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 323 ~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
.+.|--.+ ...|++++ |.++++|..+.+... .....|...|.+++..++|..+++ ++.|..+.||...
T Consensus 149 ~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~S-----gS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 149 SVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCS-----GSWDTMLKIWSVE 223 (423)
T ss_pred eeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEe-----ecccceeeecccC
Confidence 35553302 23578888 999999998866532 223478888999999999999999 8899999988732
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
......+...+. -+.++ .+ .....+.....+.+.+|..+|.++.|++ .
T Consensus 224 ~~~~~~~E~~s~----------~rrk~---------~~------------~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 224 TDEEDELESSSN----------RRRKK---------QK------------REKEGGTRTPLVTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred CCccccccccch----------hhhhh---------hh------------hhhcccccCceEEecccccceeeEEEcC-C
Confidence 211111110000 00000 00 0001112233467889999999999998 6
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc--eeee-
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ETMA- 551 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~--~~~~- 551 (712)
..+++++.|. +|+.||+.++.. +.++ .+...+++..+|..++|++|+. |..+++||.+++ ..+.
T Consensus 272 ~v~yS~SwDH---TIk~WDletg~~------~~~~~~~ksl~~i~~~~~~~Ll~~gss---dr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 272 TVIYSVSWDH---TIKVWDLETGGL------KSTLTTNKSLNCISYSPLSKLLASGSS---DRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred CceEeecccc---eEEEEEeecccc------eeeeecCcceeEeecccccceeeecCC---CCceeecCCCCCCCceeEE
Confidence 7788899999 999999988763 3333 3568899999999999999998 999999999853 3332
Q ss_pred --eccccceeeEEECCCCCE-EEEEEccceeccccEEEEEecC--ceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 552 --TAEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNIWSFNG--KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 552 --~~~~~~v~~~~~spdg~~-l~t~s~~~~~~d~~v~iw~~~g--~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+|..-|.++.|+|...| |++++. ||++++||+.. ..++.+ |.+.|.++.|.. +..++|++.|.+|+
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~-----D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSY-----DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEec-----CCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence 378889999999998876 566667 99999999873 256655 668999999985 56799999998876
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=188.70 Aligned_cols=266 Identities=12% Similarity=0.218 Sum_probs=209.2
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.+|.|+.+ |...+++|..| .+|+|||..+-.+++.+.+|.+.+. |+++ +.+.
T Consensus 198 kgVYClQY--DD~kiVSGlrD----------nTikiWD~n~~~c~~~L~GHtGSVL-------------CLqy---d~rv 249 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRD----------NTIKIWDKNSLECLKILTGHTGSVL-------------CLQY---DERV 249 (499)
T ss_pred CceEEEEe--cchhhhccccc----------CceEEeccccHHHHHhhhcCCCcEE-------------eeec---cceE
Confidence 35889888 56779999999 9999999989999999999999873 4544 7789
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee-eeeec
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN-LFSVS 411 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~ 411 (712)
|++++ |.+|+|||.++++.+.....|.+.|..+.|+. .++++ ++.|.++.||.+..|+...+...- .+...
T Consensus 250 iisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvt-----cSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 250 IVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVT-----CSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred EEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEE-----ecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 99998 99999999999999988888889999999974 67777 889999999999888744322211 11111
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
...+ .-+.+++++++.+.+ +++|++.... ...++.+|...|-|+.+ .|+++++|+.|. +|+
T Consensus 323 VNvV--dfd~kyIVsASgDRT---------ikvW~~st~e---fvRtl~gHkRGIAClQY--r~rlvVSGSSDn---tIR 383 (499)
T KOG0281|consen 323 VNVV--DFDDKYIVSASGDRT---------IKVWSTSTCE---FVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIR 383 (499)
T ss_pred eeee--ccccceEEEecCCce---------EEEEecccee---eehhhhcccccceehhc--cCeEEEecCCCc---eEE
Confidence 1112 345679999999988 7888876532 22457789999988876 688999999998 999
Q ss_pred EEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---------e--eccccce
Q 005140 492 FYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM---------A--TAEHFMA 558 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~---------~--~~~~~~v 558 (712)
+||+..|. .+..+.+| -|.++.| |.+.+++|++ ||+|++||+..+..- . ..|.+.|
T Consensus 384 lwdi~~G~------cLRvLeGHEeLvRciRF--d~krIVSGaY---DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRV 452 (499)
T KOG0281|consen 384 LWDIECGA------CLRVLEGHEELVRCIRF--DNKRIVSGAY---DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV 452 (499)
T ss_pred EEeccccH------HHHHHhchHHhhhheee--cCceeeeccc---cceEEEEecccccCCcccccchHHHhhhhcccee
Confidence 99998766 66677777 4788888 5689999999 999999999854321 1 1455788
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
..+.|+ ...|++++. |.+|.|||+..
T Consensus 453 FrLQFD--~fqIvsssH-----ddtILiWdFl~ 478 (499)
T KOG0281|consen 453 FRLQFD--EFQIISSSH-----DDTILIWDFLN 478 (499)
T ss_pred EEEeec--ceEEEeccC-----CCeEEEEEcCC
Confidence 888886 467888888 89999999863
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-20 Score=185.81 Aligned_cols=438 Identities=14% Similarity=0.149 Sum_probs=268.4
Q ss_pred EEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccce
Q 005140 139 IFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESF 218 (712)
Q Consensus 139 ~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~ 218 (712)
.+.+.+....-++-++...|-....-...+.+.+...+..+.+| ++....++.+.-|+. ...++...+.....++.+
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl-~~lk~~~~~d~~gg~IWs 115 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDL-HTLKQKYNIDSNGGAIWS 115 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEec-ccCceeEEecCCCcceeE
Confidence 34555544444444555455443333322323333222223333 344455777889999 577888888888899999
Q ss_pred EEEcCCCcEEEEEecCceE-EeecccCcceeeee----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 219 VQWSPLGTYLATVHRQGAA-VWGGANTFNRLMRY----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~i~-iw~~~~~~~~~~~~----~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
++.+|.++.++.|+.+|+. +.++. ........ ....|.+++|+|++..|++|+.| |.|++||+.
T Consensus 116 iai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D----------g~Iriwd~~ 184 (691)
T KOG2048|consen 116 IAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID----------GVIRIWDVK 184 (691)
T ss_pred EEeCCccceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccC----------ceEEEEEcC
Confidence 9999999999999999943 55555 33332222 23459999999999999999999 999999999
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
++..+.......+.. ..+-..+.|. +.+-. ++ .|+++. .|+|.+||...+.++.....|...|.+++.++++
T Consensus 185 ~~~t~~~~~~~~d~l----~k~~~~iVWS-v~~Lr-d~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRL----SKREPTIVWS-VLFLR-DS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred CCceEEEeeeccccc----ccCCceEEEE-EEEee-cC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 998877332221111 1112224464 55555 55 456666 9999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCcc--ce--eeeeeeeecceeEEECcC-----CC--EEEEEEccccc--------
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKE--EL--RQKNLFSVSDCKMYWQSS-----GD--YLAVKVDRYTK-------- 433 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~~~~~~~s~~-----g~--~l~~~~~~~~~-------- 433 (712)
..+.+ +|.|.. |..|.....+ .+ ....++..+..+++..++ |. .|++......+
T Consensus 258 d~vfs-----aGvd~~--ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~ 330 (691)
T KOG2048|consen 258 DRVFS-----AGVDPK--IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKN 330 (691)
T ss_pred CeEEE-----ccCCCc--eEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccc
Confidence 99988 555554 4444433221 11 111111111111111111 11 11111111100
Q ss_pred ----------ccc------cccccEEEEEEecCC-------cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 434 ----------TKK------STYTGFELFRIKERD-------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 434 ----------~~~------~~~~~~~l~~l~~~~-------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
... -....+.+|++...- .....+.+ .....|.+.+.||+|+.||++.-. .+
T Consensus 331 ~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~-k~~~nIs~~aiSPdg~~Ia~st~~----~~ 405 (691)
T KOG2048|consen 331 LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT-KEKENISCAAISPDGNLIAISTVS----RT 405 (691)
T ss_pred cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeec-CCccceeeeccCCCCCEEEEeecc----ce
Confidence 000 001224455554320 01112222 234578899999999999998763 58
Q ss_pred EEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc--eeee----eccccceeeEE
Q 005140 491 SFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ETMA----TAEHFMATDVE 562 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~--~~~~----~~~~~~v~~~~ 562 (712)
+||.++... ..+...+...+ ...+..+.|+-|+..++.++. ....+.++++.+. +.+. +.....|+.+.
T Consensus 406 ~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~--~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~ 482 (691)
T KOG2048|consen 406 KIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK--NIFSLEEFELETPSFKELKSIQSQAKCPSISRLV 482 (691)
T ss_pred EEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec--ccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence 899886432 11112222222 125678999999988888872 1788888887743 2222 23457889999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecCceeeee---cccceeeeEEecCC-CCCCCh
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFFQFLWRPRP-PSFLTP 617 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---~~~~i~~~~w~p~~-~~l~s~ 617 (712)
.||+|.|||+.+. .+.|.+|++.+...... ....++..+++|.. +.|+.+
T Consensus 483 ~SsdG~yiaa~~t-----~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 483 VSSDGNYIAAIST-----RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred EcCCCCEEEEEec-----cceEEEEEcccceeecchhccCcceeeeeccccccCcEEEE
Confidence 9999999999999 89999999987644433 23678888888543 344433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-20 Score=189.12 Aligned_cols=282 Identities=13% Similarity=0.173 Sum_probs=191.2
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+..+++++.++ +.+||.. +.+.+..+. +..+.+++|+|+|+++ ++++.+ +.|++||+.+++.++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~----------~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA-TLEVTRTFPVGQRPRGITLSKDGKLLYVCASDS----------DTIQVIDLATGEVIGTL 69 (300)
T ss_pred CcEEEEecCCCEEEEEECC-CCceEEEEECCCCCCceEECCCCCEEEEEECCC----------CeEEEEECCCCcEEEec
Confidence 35678888888 8899998 677766665 4458889999999987 455666 78999999999888777
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..+.... .+.|+| ++++++.+ . ++.|.+||+.+...+..... ...+.+++|+|+|..+++
T Consensus 70 ~~~~~~~--------------~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~-- 131 (300)
T TIGR03866 70 PSGPDPE--------------LFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVN-- 131 (300)
T ss_pred cCCCCcc--------------EEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEE--
Confidence 6544333 588999 99977554 4 89999999987765543321 123577889999888876
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
++.+.. .+..|+..+.. .+ .....
T Consensus 132 ---~~~~~~-~~~~~d~~~~~----------------------~~------------------------------~~~~~ 155 (300)
T TIGR03866 132 ---TSETTN-MAHFIDTKTYE----------------------IV------------------------------DNVLV 155 (300)
T ss_pred ---EecCCC-eEEEEeCCCCe----------------------EE------------------------------EEEEc
Confidence 322221 12222221110 00 00001
Q ss_pred cCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC--C-----C--ceeEEEEccCCCeEEE
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK--G-----K--QANALFWSPSGRFIVL 529 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~-----~--~v~~l~~spdg~~l~~ 529 (712)
...+.+++|+|+|++|++++. ++ .|.+||+.++.. +..+. . . ....++|+|+|+++++
T Consensus 156 ---~~~~~~~~~s~dg~~l~~~~~~~~---~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 156 ---DQRPRFAEFTADGKELWVSSEIGG---TVSVIDVATRKV------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ---CCCccEEEECCCCCEEEEEcCCCC---EEEEEEcCccee------eeeeeecccccccccCCccceEECCCCCEEEE
Confidence 233467899999998876654 66 899999976542 22211 0 1 2346889999998766
Q ss_pred EeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eeeeec-ccceeeeE
Q 005140 530 AGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRTL-KDHFFQFL 606 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~~-~~~i~~~~ 606 (712)
+..+ ++.+.+||..+++.+.. .+...+.+++|+|+|++|+++... ++.+.+||+.+. .+.... ....+.++
T Consensus 224 ~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~----~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 297 (300)
T TIGR03866 224 ALGP--ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV----SNDVSVIDVAALKVIKSIKVGRLPWGVV 297 (300)
T ss_pred EcCC--CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC----CCeEEEEECCCCcEEEEEEcccccceeE
Confidence 5421 56899999998887654 344578899999999999887532 799999999854 334332 24567777
Q ss_pred Eec
Q 005140 607 WRP 609 (712)
Q Consensus 607 w~p 609 (712)
++|
T Consensus 298 ~~~ 300 (300)
T TIGR03866 298 VRP 300 (300)
T ss_pred eCC
Confidence 765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-21 Score=192.55 Aligned_cols=386 Identities=17% Similarity=0.216 Sum_probs=245.6
Q ss_pred EEECCeeEEEecCC-CCCCCcccccCCCcccceEEEcCCCc---EEEEEecCc-eEEeecccCc----------------
Q 005140 187 IRSGTDTEVLWNDA-RHLKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGANTF---------------- 245 (712)
Q Consensus 187 ~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~~~~---------------- 245 (712)
++..+..+.++... .+......+.+|..-|.+++|+..|. +||+++.|. |+||.+.-..
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC
Confidence 33334444455442 23355667899999999999997655 899999998 8899653111
Q ss_pred ----cee--ee---------ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcc
Q 005140 246 ----NRL--MR---------YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADE 307 (712)
Q Consensus 246 ----~~~--~~---------~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~ 307 (712)
... .+ ..|.+ |.++.|+|.+..|++++.| .++.+|...+. --+......
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD----------ksmiiW~pd~~tGiWv~~vRlG--- 310 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD----------KSMIIWKPDENTGIWVDVVRLG--- 310 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccC----------cceEEEecCCccceEEEEEEee---
Confidence 001 01 13665 9999999999999999999 89999986433 222222111
Q ss_pred cccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC---ceecccccccccCeeeEEECCCCCeEEEEeecCC
Q 005140 308 FAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES---FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELG 383 (712)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~ 383 (712)
+.++..+--| ...|+| ++..+++-+ .|..++|.... .......+.|..+|.+++|+|.|.+|++ .
T Consensus 311 ----e~gg~a~GF~-g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLs-----v 379 (764)
T KOG1063|consen 311 ----EVGGSAGGFW-GGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLS-----V 379 (764)
T ss_pred ----ccccccccee-eEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEE-----e
Confidence 1111111114 478999 999888888 99999998332 1234455689999999999999999999 7
Q ss_pred CCCCCeEEEEEecC--CccceeeeeeeeecceeEEECcCCCEEEEEEcccc-----------------------------
Q 005140 384 GGNQPARVSLVQIP--SKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT----------------------------- 432 (712)
Q Consensus 384 ~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~----------------------------- 432 (712)
|.|++.|++---.. +..++.....+..+..++.+-+....++.+.+...
T Consensus 380 s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p 459 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP 459 (764)
T ss_pred ccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence 88888887542211 11223333333322222332221112222211110
Q ss_pred ---------cccccccc-----c---EEEEEEecCC-------cc-----------eeEEEecCCCCceEEEEEeeCCCE
Q 005140 433 ---------KTKKSTYT-----G---FELFRIKERD-------IP-----------IEVLELDNKNDKIIAFAWEPKGHR 477 (712)
Q Consensus 433 ---------~~~~~~~~-----~---~~l~~l~~~~-------~~-----------~~~~~l~~h~~~v~~~~~sp~g~~ 477 (712)
.+.+..+. + ..-+...... .| .+...+.||...|.+++.+|+|+.
T Consensus 460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl 539 (764)
T KOG1063|consen 460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL 539 (764)
T ss_pred cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE
Confidence 00111110 0 0001110000 00 011234589999999999999999
Q ss_pred EEEEEcCCC--CCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---
Q 005140 478 FAVIHGDSP--RPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM--- 550 (712)
Q Consensus 478 l~~~~~d~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~--- 550 (712)
+|++..... ...|++|+..+-. ....+.+| .|+.++|||||++|++++. |.++.+|........
T Consensus 540 iASaCKS~~~ehAvI~lw~t~~W~------~~~~L~~HsLTVT~l~FSpdg~~LLsvsR---DRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 540 IASACKSSLKEHAVIRLWNTANWL------QVQELEGHSLTVTRLAFSPDGRYLLSVSR---DRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EeehhhhCCccceEEEEEeccchh------hhheecccceEEEEEEECCCCcEEEEeec---CceEEeeeeecccchhhh
Confidence 999876432 2368899875432 44566666 5899999999999999998 999999987632221
Q ss_pred ---eeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc---eeee----ecccceeeeEEecC
Q 005140 551 ---ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK---LLYR----TLKDHFFQFLWRPR 610 (712)
Q Consensus 551 ---~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~---~~~~----~~~~~i~~~~w~p~ 610 (712)
.+.|..-|.++.|+|++++++|+|. |..|++|..... .+.. .....|+.++|.|-
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSR-----DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASR-----DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecC-----CceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence 2367788999999999999999999 999999998643 2222 13467888888874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=180.63 Aligned_cols=284 Identities=12% Similarity=0.194 Sum_probs=210.2
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCc------------------ceeeee-cC-CCeeEEEecCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF------------------NRLMRY-AH-PQVKLIDFSPGE 265 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~------------------~~~~~~-~~-~~v~~i~~Spdg 265 (712)
..++.|..++++.+|||||.++|||+.|. |+|.|++ .. ..+.++ .| ..|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildve-rmlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVE-RMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehh-hhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 35688999999999999999999999998 8899875 11 122333 23 359999999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEE
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 344 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~i 344 (712)
..|++++.| ++|++||...-...+.++.-.... .+. ++.|.| .|.+|+.+. -.++++
T Consensus 185 ~ILiS~srD----------~tvKlFDfsK~saKrA~K~~qd~~------~vr-----siSfHP-sGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 185 TILISGSRD----------NTVKLFDFSKTSAKRAFKVFQDTE------PVR-----SISFHP-SGEFLLVGTDHPTLRL 242 (430)
T ss_pred heEEeccCC----------CeEEEEecccHHHHHHHHHhhccc------eee-----eEeecC-CCceEEEecCCCceeE
Confidence 999999999 999999986544333333221111 111 689999 999999999 678999
Q ss_pred EEcCCceeccc---ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCC
Q 005140 345 YETESFTLIDK---KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG 421 (712)
Q Consensus 345 wd~~~~~~~~~---~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 421 (712)
||+++.+.... ...|.+.|+++.+|+.++..++ ++.|+.+++| +.-+.+.+...
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT-----aSkDG~Iklw--DGVS~rCv~t~---------------- 299 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT-----ASKDGAIKLW--DGVSNRCVRTI---------------- 299 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEE-----eccCCcEEee--ccccHHHHHHH----------------
Confidence 99998775432 2346677999999999998888 7777776654 32222211110
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 422 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
. .+| ...|.+..|..+|+|+++.+.|. .+++|.+.++.
T Consensus 300 ------------------------------------~-~AH~gsevcSa~Ftkn~kyiLsSG~DS---~vkLWEi~t~R- 338 (430)
T KOG0640|consen 300 ------------------------------------G-NAHGGSEVCSAVFTKNGKYILSSGKDS---TVKLWEISTGR- 338 (430)
T ss_pred ------------------------------------H-hhcCCceeeeEEEccCCeEEeecCCcc---eeeeeeecCCc-
Confidence 0 023 34688889999999999999999 99999997765
Q ss_pred cCceeEEEEeCCC-------ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee---eeeccccceeeEEECCCCCEE
Q 005140 501 AGRVSKLTTLKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 501 ~~~~~~~~~~~~~-------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~spdg~~l 570 (712)
.+..+.+. ..+...|+....|+++-.. ..+.+.-||.++... +..+|.+.+..+.-||.+.-+
T Consensus 339 -----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 339 -----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred -----eEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence 44444322 1355677877888877653 257899999987554 445889999999999999999
Q ss_pred EEEEccceeccccEEEEEe
Q 005140 571 ATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~ 589 (712)
++++. |...++|--
T Consensus 412 mTcsd-----D~raRFWyr 425 (430)
T KOG0640|consen 412 MTCSD-----DFRARFWYR 425 (430)
T ss_pred eeecc-----cceeeeeee
Confidence 99999 999999953
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=202.89 Aligned_cols=251 Identities=14% Similarity=0.199 Sum_probs=168.4
Q ss_pred eeEEEecCCCCCCCcccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecccCcc-------eeeee-cCC-CeeEEE
Q 005140 192 DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFN-------RLMRY-AHP-QVKLID 260 (712)
Q Consensus 192 ~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~-------~~~~~-~~~-~v~~i~ 260 (712)
+++.+|+.. ...+...+.+|...|.+++|+|+ +.+||+++.|+ |+||++..... .+..+ .|. .|.+++
T Consensus 54 gvI~L~~~~-r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 54 GAIRLENQM-RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eEEEeeecC-CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 456688874 34566778999999999999997 89999999999 88999872221 12222 244 599999
Q ss_pred ecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
|+|++.++ ++++.| ++|+|||+.+++.+..+..+ ..+. +++|+| +|.+|++++
T Consensus 133 f~P~g~~iLaSgS~D----------gtIrIWDl~tg~~~~~i~~~-~~V~-------------Slswsp-dG~lLat~s~ 187 (568)
T PTZ00420 133 WNPMNYYIMCSSGFD----------SFVNIWDIENEKRAFQINMP-KKLS-------------SLKWNI-KGNLLSGTCV 187 (568)
T ss_pred ECCCCCeEEEEEeCC----------CeEEEEECCCCcEEEEEecC-CcEE-------------EEEECC-CCCEEEEEec
Confidence 99999765 688999 99999999999877776533 2221 799999 999999888
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
|+.|+|||+.++..+.....|...+....+. . ..|+
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~-----------------------~---------------------~~fs 223 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIW-----------------------I---------------------DGLG 223 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEE-----------------------e---------------------eeEc
Confidence 9999999999887665444444332211100 0 0123
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+++.+|++++.+.. ....+.||+++..+.++....+..+.+.+..+..+++|.++++|.+|+ +|++|++..+
T Consensus 224 ~d~~~IlTtG~d~~-----~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~---tIr~~e~~~~ 295 (568)
T PTZ00420 224 GDDNYILSTGFSKN-----NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG---NCRYYQHSLG 295 (568)
T ss_pred CCCCEEEEEEcCCC-----CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC---eEEEEEccCC
Confidence 44444444333221 001256666665445554455544445444444456789999999999 9999999654
Q ss_pred cccCceeEEEEeC-CCceeEEEEccCC
Q 005140 499 QHAGRVSKLTTLK-GKQANALFWSPSG 524 (712)
Q Consensus 499 ~~~~~~~~~~~~~-~~~v~~l~~spdg 524 (712)
. +..+..+. ..+..+++|.|+-
T Consensus 296 ~----~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 296 S----IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred c----EEeecccccCCCccceEEcccc
Confidence 2 22344333 3367889999964
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=189.24 Aligned_cols=269 Identities=14% Similarity=0.206 Sum_probs=206.4
Q ss_pred CCCeeEEEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQVKLIDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|..|.+++|||...| +|+.+.- .+.||+..+...++++..-...+. ++.|.. ||
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~-----------rvqly~~~~~~~~k~~srFk~~v~-------------s~~fR~-DG 80 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV-----------RVQLYSSVTRSVRKTFSRFKDVVY-------------SVDFRS-DG 80 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc-----------EEEEEecchhhhhhhHHhhcccee-------------EEEeec-CC
Confidence 556999999997543 4444433 588999888777776665555442 688999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
+++|.|. .|.|+|||..+...+.....|..+|....|+|.++.+++. |+.+...++|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s----~sDd~v~k~~------------------ 138 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS----GSDDKVVKYW------------------ 138 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe----cCCCceEEEE------------------
Confidence 9999999 9999999977766676777788889999999987776653 4444444433
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCe
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPD 489 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~ 489 (712)
++...- .+.++.+|.+.|.+.+|+|- ++.+++|+.|| .
T Consensus 139 -----------------------------------d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg---~ 177 (487)
T KOG0310|consen 139 -----------------------------------DLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDG---K 177 (487)
T ss_pred -----------------------------------EcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCc---e
Confidence 332211 13567799999999999995 55788888899 9
Q ss_pred EEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-eee--ccccceeeEEECC
Q 005140 490 ISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT--AEHFMATDVEWDP 565 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~~~--~~~~~v~~~~~sp 565 (712)
|++||++.... .+.++. +++|..+.+-|.|..+++++ ...|++||+.+|.+ +.. .|+..|||+.+..
T Consensus 178 vrl~DtR~~~~-----~v~elnhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 178 VRLWDTRSLTS-----RVVELNHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred EEEEEeccCCc-----eeEEecCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 99999987542 566665 66999999999999999998 57999999995544 433 4889999999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCce-eeee-cccceeeeEEecCCCCCCChhhHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGKL-LYRT-LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~-~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
+++.|++++. |+.+++|++..-. ++.. -.++|.+++.+|++..++.+-.++.+
T Consensus 249 ~~~rLlS~sL-----D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 249 DSTRLLSGSL-----DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred CCceEeeccc-----ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccccee
Confidence 9999999999 9999999976433 3333 34899999999998877776655543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=179.95 Aligned_cols=273 Identities=15% Similarity=0.278 Sum_probs=204.2
Q ss_pred hhccCCCCCceEEE-EECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCc---EEEEEecCc-eEEeecccCcce-
Q 005140 174 KWLTDEKARDQFVI-RSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGANTFNR- 247 (712)
Q Consensus 174 ~~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~~~~~~- 247 (712)
+|+..-++...+++ ++-|++..+|+. .++....+.+|..++.+++|--... .+++++.|. +.+|..+ ....
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~-~~~~~ 182 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN-VGENK 182 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec-Cchhh
Confidence 67777776665554 445888999998 6888889999999999888854333 599999998 7799776 3332
Q ss_pred -----eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-------------------------CCce
Q 005140 248 -----LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-------------------------TGKV 297 (712)
Q Consensus 248 -----~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-------------------------~g~~ 297 (712)
.++.|...|.+++..++|..+++|+.| .+|.||+.. ++.+
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D----------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD----------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeeccc----------ceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 222233459999999999999999999 899999931 1224
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEE
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
+-++.+|...+. ++.|++ ...+.+++ |.+|+.||+.+++....+ .....+.+++.+|..+.|+
T Consensus 253 ~vtl~GHt~~Vs-------------~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 253 LVTLEGHTEPVS-------------SVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred eEEeccccccee-------------eEEEcC--CCceEeecccceEEEEEeecccceeee-ecCcceeEeecccccceee
Confidence 555667766653 688876 45566677 999999999998877554 2334588999999888888
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
+ |+.+...++|. -+..+..+..
T Consensus 317 ~-----gssdr~irl~D-----------------------------------------------------PR~~~gs~v~ 338 (423)
T KOG0313|consen 317 S-----GSSDRHIRLWD-----------------------------------------------------PRTGDGSVVS 338 (423)
T ss_pred e-----cCCCCceeecC-----------------------------------------------------CCCCCCceeE
Confidence 8 66666655433 2222222334
Q ss_pred EEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEecc
Q 005140 457 LELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLK 533 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~ 533 (712)
.++.+|+..|.++.|+|.. ..|++++.|+ ++++||+++... ++..+.+| .+.++.|+. |.+|++|+.
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~---t~klWDvRS~k~-----plydI~~h~DKvl~vdW~~-~~~IvSGGa- 408 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDVRSTKA-----PLYDIAGHNDKVLSVDWNE-GGLIVSGGA- 408 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCC---eEEEEEeccCCC-----cceeeccCCceEEEEeccC-CceEEeccC-
Confidence 5677999999999999954 5677888899 999999988665 67777766 688999974 668999998
Q ss_pred CCCceEEEEECC
Q 005140 534 GFNGQLEFYNVD 545 (712)
Q Consensus 534 ~~dg~v~iwd~~ 545 (712)
|.+|+|+...
T Consensus 409 --D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 --DNKLRIFKGS 418 (423)
T ss_pred --cceEEEeccc
Confidence 9999998654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=189.97 Aligned_cols=266 Identities=14% Similarity=0.203 Sum_probs=192.7
Q ss_pred eEEecCCCC-CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+++=.| .. ..+++++ ||.|+|||+.....+.....|.+-|.++++.. ..+++ +|.|.+++.|.++.+-..
T Consensus 71 ~lakhp-~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~t-----vgdDKtvK~wk~~~~p~~ 142 (433)
T KOG0268|consen 71 CLAKHP-NKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFT-----VGDDKTVKQWKIDGPPLH 142 (433)
T ss_pred hhhcCc-chhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEE-----ecCCcceeeeeccCCcce
Confidence 566666 44 5678888 99999999998888877778888899999987 44555 678999999999886322
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFA 479 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~ 479 (712)
.+...... ..+.-+..+..++++... +.||+.... .|+..++. ..+.|.++.|+|.- ..|+
T Consensus 143 tilg~s~~----~gIdh~~~~~~FaTcGe~-----------i~IWD~~R~-~Pv~smsw--G~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 143 TILGKSVY----LGIDHHRKNSVFATCGEQ-----------IDIWDEQRD-NPVSSMSW--GADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeccccc----cccccccccccccccCce-----------eeecccccC-Cccceeec--CCCceeEEecCCCcchhee
Confidence 22211110 011111222233333222 788987542 45444444 36789999999965 4566
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee---eeeccc
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEH 555 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~ 555 (712)
++..|+ .|.+||+++.. +++.+. ....+.|+|+|.+-.+++|+. |..++.||+..... +...|.
T Consensus 205 s~~sDr---sIvLyD~R~~~------Pl~KVi~~mRTN~IswnPeafnF~~a~E---D~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 205 SCASDR---SIVLYDLRQAS------PLKKVILTMRTNTICWNPEAFNFVAANE---DHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred eeccCC---ceEEEecccCC------ccceeeeeccccceecCccccceeeccc---cccceehhhhhhcccchhhcccc
Confidence 666788 89999998766 444433 345689999997767777776 99999999985543 334777
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCce----eeeecccceeeeEEecCCCCCCChhhHHHHHHHHHHhh
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL----LYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYS 631 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~----~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~~~~~ 631 (712)
..|.+++|||.|+-+++|+. |.+|+||..+... .++....+|.++.||.|.++++|+|+|+.||-|-...+
T Consensus 273 sAV~dVdfsptG~Efvsgsy-----DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSY-----DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eeEEEeccCCCcchhccccc-----cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 89999999999999999999 9999999987432 23446689999999999999999999999985544333
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=190.72 Aligned_cols=281 Identities=12% Similarity=0.272 Sum_probs=189.7
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-eeeecc---CCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFK---GSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|..+++.|.|-.|++|+.| ..|++||+.... ..+.|+ ...... ..+++||+ .
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~D----------y~v~~wDf~gMdas~~~fr~l~P~E~h~------------i~sl~ys~-T 225 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLD----------YTVKFWDFQGMDASMRSFRQLQPCETHQ------------INSLQYSV-T 225 (641)
T ss_pred EEEEeeecCCCceeeecccc----------ceEEEEecccccccchhhhccCcccccc------------cceeeecC-C
Confidence 39999999999999999999 899999985432 122222 111111 11689999 8
Q ss_pred CCEEEEec-CCeEEEEEcCCceecc------------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC
Q 005140 331 DKYFAKLG-KNMISVYETESFTLID------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP 397 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~ 397 (712)
|..|++.+ ....+|+|-....... ....|...+++-+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~------------------------------ 275 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC------------------------------ 275 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc------------------------------
Confidence 87666655 8888999876443321 1112333344444
Q ss_pred CccceeeeeeeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCceEEEEEee
Q 005140 398 SKEELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEP 473 (712)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp 473 (712)
|+|..+ .+++++.+++ +++|++.........+. ..+..-++++++|+|
T Consensus 276 -------------------whP~~k~~FlT~s~Dgt---------lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr 327 (641)
T KOG0772|consen 276 -------------------WHPDNKEEFLTCSYDGT---------LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR 327 (641)
T ss_pred -------------------cccCcccceEEecCCCc---------EEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence 555443 3444444444 56666655433322222 123355788999999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-e
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-M 550 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~ 550 (712)
+|+.||++..|| .|.+|+..+.... ....+...+ +..|+++.||+||++|++-+. |+++++||++..+. +
T Consensus 328 dg~~iAagc~DG---SIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 328 DGKLIAAGCLDG---SIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKKPL 400 (641)
T ss_pred CcchhhhcccCC---ceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccC---CCceeeeeccccccch
Confidence 999999999999 9999998543221 112233322 347999999999999999988 99999999996543 3
Q ss_pred ee----ccccceeeEEECCCCCEEEEEEcc-ceeccccEEEEEec-Cceeeeec--ccceeeeEEecCCCCCCChhhHHH
Q 005140 551 AT----AEHFMATDVEWDPTGRYVATAVTS-VHEMENGFNIWSFN-GKLLYRTL--KDHFFQFLWRPRPPSFLTPEKEEE 622 (712)
Q Consensus 551 ~~----~~~~~v~~~~~spdg~~l~t~s~~-~~~~d~~v~iw~~~-g~~~~~~~--~~~i~~~~w~p~~~~l~s~~~d~~ 622 (712)
.. .....-+.++|||+.+.|++|++. .-...+.+.+|+.. -..++++. ...|..+.|+|.-+.|+.++.++.
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 32 334667899999999999999875 22224678888854 34555553 367889999999998888887776
Q ss_pred H
Q 005140 623 I 623 (712)
Q Consensus 623 i 623 (712)
+
T Consensus 481 ~ 481 (641)
T KOG0772|consen 481 A 481 (641)
T ss_pred e
Confidence 5
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=200.79 Aligned_cols=238 Identities=16% Similarity=0.291 Sum_probs=170.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--------------------------------------
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-------------------------------------- 295 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-------------------------------------- 295 (712)
..|.++.||+||+|||+|+.| +.|+||.+...
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD----------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGED----------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred CcEEEEEeCCCCceeeecCCC----------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 349999999999999999999 99999987540
Q ss_pred ----------------------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee
Q 005140 296 ----------------------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 296 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~ 352 (712)
++++.|.+|...+. .+.||. + ++|.+++ |.+|++|++.....
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DIL-------------DlSWSK-n-~fLLSSSMDKTVRLWh~~~~~C 402 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADIL-------------DLSWSK-N-NFLLSSSMDKTVRLWHPGRKEC 402 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhhe-------------eccccc-C-CeeEeccccccEEeecCCCcce
Confidence 01122334443331 688987 4 5666666 99999999998777
Q ss_pred cccccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 353 IDKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
+... .|..-|+|++|+|- ++++++ |+-|+.++||- ++..+ ++
T Consensus 403 L~~F-~HndfVTcVaFnPvDDryFiS-----GSLD~KvRiWs--I~d~~-----------------------Vv------ 445 (712)
T KOG0283|consen 403 LKVF-SHNDFVTCVAFNPVDDRYFIS-----GSLDGKVRLWS--ISDKK-----------------------VV------ 445 (712)
T ss_pred eeEE-ecCCeeEEEEecccCCCcEee-----cccccceEEee--cCcCe-----------------------eE------
Confidence 7554 68888999999994 688888 77777766653 22211 11
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE---
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT--- 508 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~--- 508 (712)
.| ..+ ..-|++++++|||++.++|+-+| .++||+....+..... .+.
T Consensus 446 ------------~W-----------~Dl---~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~~~~-~I~~~~ 495 (712)
T KOG0283|consen 446 ------------DW-----------NDL---RDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLVSDF-HIRLHN 495 (712)
T ss_pred ------------ee-----------hhh---hhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEEEee-eEeecc
Confidence 11 012 46789999999999999999999 9999998653321000 011
Q ss_pred --EeCCCceeEEEEccCCC-eEEEEeccCCCceEEEEECCcceeeeecc----ccceeeEEECCCCCEEEEEEccceecc
Q 005140 509 --TLKGKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMATAE----HFMATDVEWDPTGRYVATAVTSVHEME 581 (712)
Q Consensus 509 --~~~~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~~~~~~~----~~~v~~~~~spdg~~l~t~s~~~~~~d 581 (712)
...++.|+.+.|.|... .+++.+. |..|+|||..+..++.... ...-....|+.||++|++++. |
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSn---DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se-----D 567 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSN---DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE-----D 567 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecC---CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec-----C
Confidence 11233699999998543 3555555 9999999997666655422 134457899999999999998 9
Q ss_pred ccEEEEEecC
Q 005140 582 NGFNIWSFNG 591 (712)
Q Consensus 582 ~~v~iw~~~g 591 (712)
..|+||++..
T Consensus 568 s~VYiW~~~~ 577 (712)
T KOG0283|consen 568 SWVYIWKNDS 577 (712)
T ss_pred ceEEEEeCCC
Confidence 9999999854
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=180.52 Aligned_cols=285 Identities=14% Similarity=0.247 Sum_probs=222.6
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
+.....+++.++...|....+++|+.| ..+.++|..+++.+..|+||...++ .+.++
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d----------~~av~~d~~s~q~l~~~~Gh~kki~-------------~v~~~ 270 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGED----------KTAVLFDKPSNQILATLKGHTKKIT-------------SVKFH 270 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCC----------CceEEEecchhhhhhhccCcceEEE-------------EEEec
Confidence 333445678999999988889999999 8899999999999999999988764 68899
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
+ +...+++++ |..|+||.............|...|+.+..+|.|.||+. ++.++... ..++.+...+....
T Consensus 271 ~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYlls-----As~d~~w~--Fsd~~~g~~lt~vs 342 (506)
T KOG0289|consen 271 K-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLS-----ASNDGTWA--FSDISSGSQLTVVS 342 (506)
T ss_pred c-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEE-----ecCCceEE--EEEccCCcEEEEEe
Confidence 9 988888888 999999999876655555567888999999999999998 55555443 34445555444333
Q ss_pred e--eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 407 L--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 407 ~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
. ..+...+..|+|||-.+.+++.++. +.+|++.... ..-.+++|.++|.+++|+-+|-+||++..|
T Consensus 343 ~~~s~v~~ts~~fHpDgLifgtgt~d~~---------vkiwdlks~~---~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDGLIFGTGTPDGV---------VKIWDLKSQT---NVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred eccccceeEEeeEcCCceEEeccCCCce---------EEEEEcCCcc---ccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 2 2344556689999999999999877 8999998754 335688999999999999999999999999
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeee--ccccceee
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMAT--AEHFMATD 560 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~--~~~~~v~~ 560 (712)
+ .|++||++.... ++.+..-....++++.|.+.|.+|++++. +=+|++++-. ....+.. .|.+..+.
T Consensus 411 ~---~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k~W~~~~~~~~~sg~st~ 481 (506)
T KOG0289|consen 411 G---SVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTKSWTEIKELADHSGLSTG 481 (506)
T ss_pred C---eEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeecc---eeEEEEEecccccceeeehhhhcccccce
Confidence 9 899999975442 12222222346999999999999999976 6666666633 4445544 34467889
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+.|...-+++++++. |..++++.+
T Consensus 482 v~Fg~~aq~l~s~sm-----d~~l~~~a~ 505 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSM-----DAILRLYAL 505 (506)
T ss_pred eeecccceEEeeccc-----hhheEEeec
Confidence 999999999999999 888888764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=180.01 Aligned_cols=272 Identities=14% Similarity=0.251 Sum_probs=194.9
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
..++.++...|+.||+.|.+||+|..+ |.|.|||+.|...-+.+.+|..++. +++||
T Consensus 18 ~~tld~~~a~~~~Fs~~G~~lAvGc~n----------G~vvI~D~~T~~iar~lsaH~~pi~-------------sl~WS 74 (405)
T KOG1273|consen 18 THTLDNPLAECCQFSRWGDYLAVGCAN----------GRVVIYDFDTFRIARMLSAHVRPIT-------------SLCWS 74 (405)
T ss_pred ceeccCCccceEEeccCcceeeeeccC----------CcEEEEEccccchhhhhhcccccee-------------EEEec
Confidence 344455568999999999999999999 9999999999998899999988764 89999
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
+ ||+.|.+++ |..|.+||+..|.++....+. ..|....|+|.....++.+. -+....+.
T Consensus 75 ~-dgr~LltsS~D~si~lwDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~----~~~sp~vi-------------- 134 (405)
T KOG1273|consen 75 R-DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATI----MEESPVVI-------------- 134 (405)
T ss_pred C-CCCEeeeecCCceeEEEeccCCCceeEEEcc-CccceeeeccccCCeEEEEE----ecCCcEEE--------------
Confidence 9 999999999 999999999999877554333 35899999997544333211 11111111
Q ss_pred eeeecceeEEECcCCCEEEEE-EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVK-VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.+++ +..-+.. .+++. + +....+..|.+.|+++++|...|
T Consensus 135 ---------~~s~-~~h~~Lp~d~d~d--------------------------l---n~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 135 ---------DFSD-PKHSVLPKDDDGD--------------------------L---NSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred ---------EecC-CceeeccCCCccc--------------------------c---ccccccccccCCCCEEEEecCcc
Confidence 1222 1111111 11100 0 11222236888999999999988
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--C-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcc-------eee--ee-
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--G-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL-------ETM--AT- 552 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~-------~~~--~~- 552 (712)
.+.+|+..+.. .+..+. . ..|.++.++..|++|++-+. |..|+.|++... ++- ..
T Consensus 176 ---kllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~~e~e~~~K~ 243 (405)
T KOG1273|consen 176 ---KLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRDGEVEPEHKL 243 (405)
T ss_pred ---eEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCccCCcChhHHH
Confidence 89999987653 333332 2 46888999999999999988 999999998731 111 11
Q ss_pred ---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeecc---cceeeeEEecCCCCCCCh
Q 005140 553 ---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLK---DHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 553 ---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~---~~i~~~~w~p~~~~l~s~ 617 (712)
.....-.+++||.+|.|++.++.. -..++||.-+ |.++...|. ....++.|+|-...+++.
T Consensus 244 qDvVNk~~Wk~ccfs~dgeYv~a~s~~----aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 244 QDVVNKLQWKKCCFSGDGEYVCAGSAR----AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred HHHHhhhhhhheeecCCccEEEecccc----ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 122344579999999999988864 6799999977 777666654 457889999999888876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=170.65 Aligned_cols=272 Identities=14% Similarity=0.172 Sum_probs=187.8
Q ss_pred CCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeee--ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 211 RSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMR--YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 211 ~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~--~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
....+|++++||| ...+|+.++-|+ |++|+++.++..+-+ ..|++ |.+++||.||..+++|+.| +
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D----------k 94 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD----------K 94 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC----------C
Confidence 3457899999999 555666888888 999999844443333 23554 9999999999999999999 9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--EEEEec-CCeEEEEEcCCceecccccccccC
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK--YFAKLG-KNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~--~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
.+++||+.+++ +..+..|...+. .+.|-+ ... .|++++ |++|+.||+.....+....+. +.
T Consensus 95 ~~k~wDL~S~Q-~~~v~~Hd~pvk-------------t~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR 158 (347)
T KOG0647|consen 95 QAKLWDLASGQ-VSQVAAHDAPVK-------------TCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER 158 (347)
T ss_pred ceEEEEccCCC-eeeeeeccccee-------------EEEEec-CCCcceeEecccccceeecccCCCCeeeeeecc-ce
Confidence 99999999995 566777777663 678877 555 789999 999999999866554332221 11
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.++..- ...+++ +.++..+
T Consensus 159 vYa~Dv~--~pm~vV-----ata~r~i----------------------------------------------------- 178 (347)
T KOG0647|consen 159 VYAADVL--YPMAVV-----ATAERHI----------------------------------------------------- 178 (347)
T ss_pred eeehhcc--CceeEE-----EecCCcE-----------------------------------------------------
Confidence 2222211 122222 2222222
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc--ccCceeEEEEe---CC--Cce
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ--HAGRVSKLTTL---KG--KQA 515 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~--~~~~~~~~~~~---~~--~~v 515 (712)
.+|.|.+.......++- .-+..+.+++..++.+.+|.|+-+| .+.|..++.+. .+..++..+.- .+ -.|
T Consensus 179 ~vynL~n~~te~k~~~S-pLk~Q~R~va~f~d~~~~alGsiEG---rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIES-PLKWQTRCVACFQDKDGFALGSIEG---RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred EEEEcCCCcchhhhhcC-cccceeeEEEEEecCCceEeeeecc---eEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 23333221111000100 1156788999999999999999999 88888887642 22223333321 11 157
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
++++|+|.-..|++++. ||++.+||-+....+.+ .+..+|++.+|+.+|.++|.+..
T Consensus 255 Nsi~FhP~hgtlvTaGs---DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGS---DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cceEeecccceEEEecC---CceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 89999999889999988 99999999987666655 56689999999999999998877
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=196.57 Aligned_cols=263 Identities=14% Similarity=0.295 Sum_probs=185.8
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
|..+-+.|+|.|+|.+|++++.+ +.|++|+...- ....++..+...+ ..... +
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsd----------g~ir~~~~~sd~e~P~ti~~~g~~v---------------~~ia~-~ 65 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSD----------GDIRKWKTNSDEEEPETIDISGELV---------------SSIAC-Y 65 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCC----------CceEEeecCCcccCCchhhccCcee---------------EEEee-c
Confidence 44569999999999999999999 99999997544 3333333222222 23344 6
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 409 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 409 (712)
+.+|++++ +++|.+|..+++..-....--.-++.+++++.+|+++|. ||.|-.+++
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaa-----gsdD~~vK~------------------ 122 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAA-----GSDDTAVKL------------------ 122 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEe-----ecCceeEEE------------------
Confidence 66888888 999999999877543222112224677777777777776 555544443
Q ss_pred ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCe
Q 005140 410 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 489 (712)
Q Consensus 410 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 489 (712)
..+...+ ....+.+|.++|.++.++|.+++||+.+.|| .
T Consensus 123 -----------------------------------~~~~D~s---~~~~lrgh~apVl~l~~~p~~~fLAvss~dG---~ 161 (933)
T KOG1274|consen 123 -----------------------------------LNLDDSS---QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG---K 161 (933)
T ss_pred -----------------------------------Eeccccc---hheeecccCCceeeeeEcCCCCEEEEEecCc---e
Confidence 2221111 1144568999999999999999999999999 9
Q ss_pred EEEEEeecccccCceeEEE---EeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----ccccceeeE
Q 005140 490 ISFYSMRTAQHAGRVSKLT---TLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----AEHFMATDV 561 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~---~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----~~~~~v~~~ 561 (712)
|+||++.++.....+..+. .+. ...++.++|+|+|..+++.+. ++.|.+|+..++..... .++..++++
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCceeheeecccccccceEEE
Confidence 9999998754321111111 111 234678999999777777776 99999999998776554 334558999
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCC
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPS 613 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~ 613 (712)
+|||+|+|||+++. +|.|.|||..... .......|.+++|.|+.+.
T Consensus 239 ~wsPnG~YiAAs~~-----~g~I~vWnv~t~~-~~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 239 QWSPNGKYIAASTL-----DGQILVWNVDTHE-RHEFKRAVCCEAWKPNANA 284 (933)
T ss_pred EEcCCCcEEeeecc-----CCcEEEEecccch-hccccceeEEEecCCCCCe
Confidence 99999999999999 9999999998621 1233468999999998753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=190.37 Aligned_cols=319 Identities=14% Similarity=0.218 Sum_probs=229.6
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCc--ccccCCCcccceEEEcC------------CCcEEEEEecCc-eEEe
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPE--PVYKRSYWTESFVQWSP------------LGTYLATVHRQG-AAVW 239 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~v~~v~~Sp------------dg~~lat~~~~~-i~iw 239 (712)
..+|+ .++.+.+.|+|..+.+|+.....+.- ..+-.|...|..+.--| -| .++|++.|+ |++|
T Consensus 330 ~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 330 CQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLW 407 (1080)
T ss_pred EEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEe
Confidence 44444 56677889999999999984333222 22344554444333222 23 467788887 8899
Q ss_pred eccc--Ccceeee---------------------------e---------cCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 240 GGAN--TFNRLMR---------------------------Y---------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 240 ~~~~--~~~~~~~---------------------------~---------~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
++.. ......+ + ...++++++.||+|++||+|...
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~------- 480 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG------- 480 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc-------
Confidence 9872 0111100 0 01248999999999999999998
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC--CCCEEEEec-CCeEEEEEcC-Cceeccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG--KDKYFAKLG-KNMISVYETE-SFTLIDKKS 357 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--dg~~la~~~-d~~i~iwd~~-~~~~~~~~~ 357 (712)
|+|+||++..-+....+..|...+. ++.+|.. ..++||+++ |.-|.|||+. ...++....
T Consensus 481 ---GnlrVy~Lq~l~~~~~~eAHesEil-------------cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 481 ---GNLRVYDLQELEYTCFMEAHESEIL-------------CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred ---CceEEEEehhhhhhhheecccceeE-------------EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 9999999998888888888988763 6777642 346899999 9999999987 344555666
Q ss_pred ccccCeeeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 358 LKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.|...|+++.|...| ..+++ +|.|..+......- +.+|..+.-..
T Consensus 545 ~HSssITsvKFa~~gln~~Mis-----cGADksimFr~~qk---------------------~~~g~~f~r~t------- 591 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMIS-----CGADKSIMFRVNQK---------------------ASSGRLFPRHT------- 591 (1080)
T ss_pred ccccceeEEEEeecCCceEEEe-----ccCchhhheehhcc---------------------ccCceeccccc-------
Confidence 778889999998776 55555 55665544221110 11121111000
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
.++ ....+.+++..|..++++++..|. +|+||++.+++ ..+.+++.
T Consensus 592 ---------------------~t~--~ktTlYDm~Vdp~~k~v~t~cQDr---nirif~i~sgK------q~k~FKgs~~ 639 (1080)
T KOG1408|consen 592 ---------------------QTL--SKTTLYDMAVDPTSKLVVTVCQDR---NIRIFDIESGK------QVKSFKGSRD 639 (1080)
T ss_pred ---------------------ccc--ccceEEEeeeCCCcceEEEEeccc---ceEEEeccccc------eeeeeccccc
Confidence 001 145677889999999999999999 99999998776 45555432
Q ss_pred ---ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 514 ---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 514 ---~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..-.+...|.|-||++.+. |.+|.|+|+.+++++.+ +|...|+.+.|++|.+.|++.+. |+.|+||.
T Consensus 640 ~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg-----DgCIFvW~ 711 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG-----DGCIFVWK 711 (1080)
T ss_pred CCCceEEEEECCCccEEEEeec---CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecC-----CceEEEEE
Confidence 3566889999999999998 99999999999999986 78899999999999999999999 99999999
Q ss_pred ecC
Q 005140 589 FNG 591 (712)
Q Consensus 589 ~~g 591 (712)
+.-
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=193.95 Aligned_cols=266 Identities=8% Similarity=0.157 Sum_probs=180.7
Q ss_pred cccceEEEcCCCcEEEEEecCce-EEeecccCc---------c-----eeeeecCCCeeEEEecC-CCCEEEEEcCCCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQGA-AVWGGANTF---------N-----RLMRYAHPQVKLIDFSP-GEKYLVTYSSHEPS 277 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i-~iw~~~~~~---------~-----~~~~~~~~~v~~i~~Sp-dg~~l~t~s~d~~~ 277 (712)
..|+....++|+..+++++.+.+ ..|+..+.. + .+...|...|.+++|+| ++++|++++.|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D--- 97 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED--- 97 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC---
Confidence 34455566666665666555553 356544211 1 11222333499999999 88999999999
Q ss_pred CCcCCCccEEEEEEccCCc-------eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcC
Q 005140 278 NPRDANRVVINIFDVRTGK-------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETE 348 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~ 348 (712)
++|+|||+.++. .+..+.+|...+. +++|+| ++ .+|++++ |++|+|||+.
T Consensus 98 -------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-------------~l~f~P-~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 98 -------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-------------IVSFHP-SAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred -------CEEEEEecCCCccccccCcceEEecCCCCcEE-------------EEEeCc-CCCCEEEEEeCCCEEEEEECC
Confidence 999999997652 4667778876653 799999 86 6888888 9999999999
Q ss_pred CceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec-ceeEEECcCCCEEEEE
Q 005140 349 SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-DCKMYWQSSGDYLAVK 427 (712)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~l~~~ 427 (712)
++..+.....|...|.+++|+|+|..|++ ++.|+.++| |+..+.+.+.....+... ...+.|.+++..+++.
T Consensus 157 tg~~~~~l~~h~~~V~sla~spdG~lLat-----gs~Dg~IrI--wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCT-----TSKDKKLNI--IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEECCCCEEEE-----ecCCCEEEE--EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 88877666667788999999999999998 777776665 555555544443333222 2356799988887765
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeE
Q 005140 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSK 506 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~ 506 (712)
..... ....+.+|+++....+.....+ .+...+....|+|++++|++++ +|+ .|++|++.++.. ..
T Consensus 230 G~s~s-----~Dr~VklWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg---~Iriwdl~~~~~----~~ 296 (493)
T PTZ00421 230 GCSKS-----QQRQIMLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEG---NIRCFELMNERL----TF 296 (493)
T ss_pred ecCCC-----CCCeEEEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCC---eEEEEEeeCCce----EE
Confidence 43211 1233899999876555443333 2334566678999999999887 588 999999976542 11
Q ss_pred EEEeC-CCceeEEEEccC
Q 005140 507 LTTLK-GKQANALFWSPS 523 (712)
Q Consensus 507 ~~~~~-~~~v~~l~~spd 523 (712)
...+. ..+...++|.|.
T Consensus 297 ~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 297 CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EeeccCCCCCcceEeccc
Confidence 11222 235677888885
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-19 Score=181.73 Aligned_cols=288 Identities=13% Similarity=0.201 Sum_probs=194.2
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEE-EEEecCc-eEEeecccCcceeeeec-CCCeeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYL-ATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~l-at~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~ 260 (712)
.|+....++.+.+|+. ..++....+..+. .+.+++|+|+|+++ ++++.++ +.+|+.. +++.+..+. +..+..++
T Consensus 3 ~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 3 AYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTLPSGPDPELFA 79 (300)
T ss_pred EEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEeccCCCCccEEE
Confidence 4666777888999998 4555666666554 36789999999977 4555566 8899998 666666554 34478899
Q ss_pred ecCCCCEEEEEc-CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYLVTYS-SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s-~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
|+|+|++|++++ .+ +.|++||+.+++.+..+..+.... .++|+| +|++++++.
T Consensus 80 ~~~~g~~l~~~~~~~----------~~l~~~d~~~~~~~~~~~~~~~~~--------------~~~~~~-dg~~l~~~~~ 134 (300)
T TIGR03866 80 LHPNGKILYIANEDD----------NLVTVIDIETRKVLAEIPVGVEPE--------------GMAVSP-DGKIVVNTSE 134 (300)
T ss_pred ECCCCCEEEEEcCCC----------CeEEEEECCCCeEEeEeeCCCCcc--------------eEEECC-CCCEEEEEec
Confidence 999999886654 45 789999999888877775433222 589999 999998887
Q ss_pred C-CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 K-NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
+ ..+.+|+..++..+.... .......++|+|+++.|++ + ......|.+|+..+.+.+.... +
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~-----~-~~~~~~v~i~d~~~~~~~~~~~----------~ 197 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWV-----S-SEIGGTVSVIDVATRKVIKKIT----------F 197 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEE-----E-cCCCCEEEEEEcCcceeeeeee----------e
Confidence 4 457778988776543321 2234577899999998865 2 2223345566654433221111 0
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~ 496 (712)
... +.. ........++|+|++++++++.. ++ .+.+||+.
T Consensus 198 ~~~------------------------------~~~-------~~~~~~~~i~~s~dg~~~~~~~~~~~---~i~v~d~~ 237 (300)
T TIGR03866 198 EIP------------------------------GVH-------PEAVQPVGIKLTKDGKTAFVALGPAN---RVAVVDAK 237 (300)
T ss_pred ccc------------------------------ccc-------cccCCccceEECCCCCEEEEEcCCCC---eEEEEECC
Confidence 000 000 00112345789999998766544 34 79999986
Q ss_pred cccccCceeEEEEe-CCCceeEEEEccCCCeEEEEe-ccCCCceEEEEECCcceeeeec-cccceeeEEECC
Q 005140 497 TAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAG-LKGFNGQLEFYNVDELETMATA-EHFMATDVEWDP 565 (712)
Q Consensus 497 ~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~-~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~sp 565 (712)
++. .+..+ .++.+.+++|+|+|++|++++ . +|.|.+||+.+++.+... .....+.++++|
T Consensus 238 ~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYE------VLDYLLVGQRVWQLAFTPDEKYLLTTNGV---SNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCc------EEEEEEeCCCcceEEECCCCCEEEEEcCC---CCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 543 22222 345788999999999998864 3 799999999998876653 235567777765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=177.53 Aligned_cols=343 Identities=15% Similarity=0.225 Sum_probs=230.0
Q ss_pred eEEEcCCCcEEEEEecCceEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 218 FVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
.++|||+|+|||+.+...+.|-|.. +.+...-|. ...|..+.|+.|..+++.+.... +.|.+|++..-+
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~-tlq~~qlf~cldki~yieW~ads~~ilC~~yk~---------~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSE-TLQLHQLFLCLDKIVYIEWKADSCHILCVAYKD---------PKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccc-hhhHHHHHHHHHHhhheeeeccceeeeeeeecc---------ceEEEEEeecce
Confidence 5799999999999999999899988 776655553 44588999999998877665431 689999997666
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
--..+....... + ..+||| ||+.|...+ +-.|.||.+.+.+..... ....++..++|+|||++
T Consensus 83 w~ckIdeg~agl-----------s--~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 83 WYCKIDEGQAGL-----------S--SISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQF 147 (447)
T ss_pred eEEEeccCCCcc-----------e--eeeECC-CcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCce
Confidence 555554443332 2 689999 997666655 899999999865533211 22335789999999999
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
.+..... |..-.+.+........++.......+...+.|+|||..|++-..--. ..+|.
T Consensus 148 ~ai~sRr----DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---------ykv~a-------- 206 (447)
T KOG4497|consen 148 CAILSRR----DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---------YKVYA-------- 206 (447)
T ss_pred eeeeecc----cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---------heeee--------
Confidence 9884322 21111111111122223333334455566799999999987543211 11111
Q ss_pred eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc---------------c--------------------
Q 005140 455 EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA---------------Q-------------------- 499 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~---------------~-------------------- 499 (712)
.+- .-.+..++|+|.+++|++|+.|+ .+++.+--+- .
T Consensus 207 --Ye~---~lG~k~v~wsP~~qflavGsyD~---~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 207 --YER---GLGLKFVEWSPCNQFLAVGSYDQ---MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred --eee---ccceeEEEeccccceEEeeccch---hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 111 34677899999999999999996 4444321110 0
Q ss_pred --------ccC-----c------eeEEEEeC------C--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 500 --------HAG-----R------VSKLTTLK------G--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 500 --------~~~-----~------~~~~~~~~------~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
... . ...+..+. + ..+.-++||+|..|+++-.. +..+.+.+||++..++...
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhh
Confidence 000 0 00011111 1 12456999999999998763 3478899999998777654
Q ss_pred -ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecc--cceeeeEEecCCCCCCChhhH
Q 005140 553 -AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK--DHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 553 -~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~--~~i~~~~w~p~~~~l~s~~~d 620 (712)
....+|..+.|+|....|+.+.. ...+++|...|......+. -.|..+.|.-.|..++-.+.|
T Consensus 358 LiQk~piraf~WdP~~prL~vctg-----~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 358 LIQKHPIRAFEWDPGRPRLVVCTG-----KSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred hhhccceeEEEeCCCCceEEEEcC-----CceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence 44578999999999888888887 6789999999866555443 468899999999887766655
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=178.97 Aligned_cols=275 Identities=15% Similarity=0.236 Sum_probs=208.6
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCc------------e------ecccccccccCeeeEEECCCCCeEEEEeecCC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESF------------T------LIDKKSLKVENVMDFSWSPTDPIISLFVPELG 383 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~------------~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~ 383 (712)
+-+||+ ||.++|+++ |..|+|.|++.+ . ++..+--|.+.|+++.|+|...+|++ +
T Consensus 117 ~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS-----~ 190 (430)
T KOG0640|consen 117 AAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS-----G 190 (430)
T ss_pred eeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe-----c
Confidence 679999 999999999 999999998721 1 12222236677999999999999999 8
Q ss_pred CCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 384 GGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 384 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
+.|+.++++.+.-++-+.-...-.......++.|+|.|.+|+++++..+ +++|++.....-+....-.+|.
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~---------~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT---------LRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc---------eeEEeccceeEeeecCcccccc
Confidence 8999998888776653311100001123345689999999999999877 7899987655443333445789
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe---C-CCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---K-GKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~-~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
+.|+++.+|+.|+..++++.|| .|+|||=-+.. .+.++ + +..|.+..|+.+|+|+++.+. |..+
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG---~IklwDGVS~r------Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~---DS~v 329 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDG---AIKLWDGVSNR------CVRTIGNAHGGSEVCSAVFTKNGKYILSSGK---DSTV 329 (430)
T ss_pred cceeEEEecCCccEEEEeccCC---cEEeeccccHH------HHHHHHhhcCCceeeeEEEccCCeEEeecCC---ccee
Confidence 9999999999999999999999 99999953322 33333 2 336899999999999999998 9999
Q ss_pred EEEECCcceeeeeccc-------cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cc---eeeeecccceeeeEEe
Q 005140 540 EFYNVDELETMATAEH-------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GK---LLYRTLKDHFFQFLWR 608 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~-------~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~---~~~~~~~~~i~~~~w~ 608 (712)
++|.+.+++.+..... ..-+...|+....|++.-... .+.+.-||.. +. ++..-|.+.+..+.-|
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----s~slcsWdaRtadr~~l~slgHn~a~R~i~HS 405 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----SNSLCSWDARTADRVALLSLGHNGAVRWIVHS 405 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----cCceeeccccchhhhhhcccCCCCCceEEEeC
Confidence 9999999988875322 223456788888888877664 6788889865 32 3334477889999999
Q ss_pred cCCCCCCChhhHHHHHHHHH
Q 005140 609 PRPPSFLTPEKEEEIAKNLK 628 (712)
Q Consensus 609 p~~~~l~s~~~d~~i~~~~~ 628 (712)
|.++-+++++.|-.+|-|++
T Consensus 406 P~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 406 PVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCCCceeeecccceeeeeee
Confidence 99999999999988886654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=183.03 Aligned_cols=277 Identities=13% Similarity=0.140 Sum_probs=209.8
Q ss_pred CCCcccceEEEcCCCcEEEEEecCceEEeecccCc--ceeeeec---CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTF--NRLMRYA---HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~--~~~~~~~---~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.|..-|..+..|...+++.||+..+|+|||+...+ ..+..+. .. -|+++.++|||+.|++|+.-
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---------- 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---------- 486 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc----------
Confidence 46677889999999999999999999999987332 2333332 12 39999999999999999998
Q ss_pred cEEEEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc
Q 005140 285 VVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 361 (712)
Q Consensus 285 ~~I~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~ 361 (712)
.++.|||+..-..- ..+...... +.+++.|| |.+.+.++. ||.|.|||+.+..++..+..|.+
T Consensus 487 stlsiWDLAapTprikaeltssapa-------------CyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPA-------------CYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchh-------------hhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 89999998654421 122221111 22588999 998665554 99999999999999999999999
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
++.||..+++|..|.+ |+-|+.++.| ++...+.+.++. |...+.++...|++.+|+++.....
T Consensus 553 GascIdis~dGtklWT-----GGlDntvRcW--Dlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~--------- 615 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWT-----GGLDNTVRCW--DLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSN--------- 615 (705)
T ss_pred CceeEEecCCCceeec-----CCCccceeeh--hhhhhhhhhhhh-hhhhheecccCCCccceeeecccCc---------
Confidence 9999999999999999 7788877755 555555444444 5566777788999999999988754
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
+|.+...+.. ...+.-|..-|.++.|++.|++|++.+.|. -+..|...-+.. .+..-...+|.++.+|
T Consensus 616 --vevlh~skp~--kyqlhlheScVLSlKFa~cGkwfvStGkDn---lLnawrtPyGas-----iFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 616 --VEVLHTSKPE--KYQLHLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGAS-----IFQSKESSSVLSCDIS 683 (705)
T ss_pred --EEEEecCCcc--ceeecccccEEEEEEecccCceeeecCchh---hhhhccCccccc-----eeeccccCcceeeeec
Confidence 4444433322 244556899999999999999999999998 788898765542 2333335589999999
Q ss_pred cCCCeEEEEeccCCCceEEEEE
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd 543 (712)
.|.++|++|+. |..-.+|.
T Consensus 684 ~ddkyIVTGSG---dkkATVYe 702 (705)
T KOG0639|consen 684 FDDKYIVTGSG---DKKATVYE 702 (705)
T ss_pred cCceEEEecCC---CcceEEEE
Confidence 99999999986 66666664
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=168.03 Aligned_cols=281 Identities=16% Similarity=0.231 Sum_probs=183.6
Q ss_pred cceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 216 ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..|+.||+.|.+||.|+.+| +.|||.. ++..-..+ |...|++++||+||+.|+|++.| ..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D----------~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD----------WSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-ccchhhhhhccccceeEEEecCCCCEeeeecCC----------ceeEEEec
Confidence 67999999999999999999 8899999 77644443 44569999999999999999999 89999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEecCCeEEEEEcCCc--eecccccccccCeeeEEEC
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESF--TLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s 369 (712)
..|.+++.+...... | ..+|.|.+ .+.+|+.-+..-.+.++... .++. -+
T Consensus 95 ~~gs~l~rirf~spv-------------~-~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp-------------~d 147 (405)
T KOG1273|consen 95 LKGSPLKRIRFDSPV-------------W-GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP-------------KD 147 (405)
T ss_pred cCCCceeEEEccCcc-------------c-eeeeccccCCeEEEEEecCCcEEEEecCCceeecc-------------CC
Confidence 999999888766443 4 47888842 23444443443444333321 1111 11
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+++..=.+ + . ...|.+.|+++++++..+. +.+|+...
T Consensus 148 ~d~dln~s-----a--------------------s---------~~~fdr~g~yIitGtsKGk---------llv~~a~t 184 (405)
T KOG1273|consen 148 DDGDLNSS-----A--------------------S---------HGVFDRRGKYIITGTSKGK---------LLVYDAET 184 (405)
T ss_pred Cccccccc-----c--------------------c---------cccccCCCCEEEEecCcce---------EEEEecch
Confidence 11100000 0 0 0023455555555554433 33333332
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc---CceeEEEEeC----CCceeEEEEcc
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA---GRVSKLTTLK----GKQANALFWSP 522 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~---~~~~~~~~~~----~~~v~~l~~sp 522 (712)
...- ....+. ....|..+.++-.|..|++-+.|. .|+.|+++.-... ....+.+.+. ..+-++++||.
T Consensus 185 ~e~v-as~rit-s~~~IK~I~~s~~g~~liiNtsDR---vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 185 LECV-ASFRIT-SVQAIKQIIVSRKGRFLIINTSDR---VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred heee-eeeeec-hheeeeEEEEeccCcEEEEecCCc---eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 1110 111110 035677888999999999999998 9999998632111 1111222221 11346789999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|.|++.++. ....++||....|.+++..|. ....++.|.|--..|++-.. |.++||...
T Consensus 260 dgeYv~a~s~--~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s------g~v~iw~~~ 322 (405)
T KOG1273|consen 260 DGEYVCAGSA--RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS------GVVYIWAVV 322 (405)
T ss_pred CccEEEeccc--cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC------CceEEEEee
Confidence 9999998874 367899999999988877554 34678999999888888754 899999854
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=153.68 Aligned_cols=283 Identities=14% Similarity=0.236 Sum_probs=195.1
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeeccc-----Ccc--------ee--eeecCCC-eeEEEecCCCCEEEEEcCCC
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-----TFN--------RL--MRYAHPQ-VKLIDFSPGEKYLVTYSSHE 275 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-----~~~--------~~--~~~~~~~-v~~i~~Spdg~~l~t~s~d~ 275 (712)
...|.+++|+|.|.+.|.|+... .+|..... ... .+ ..-+|.+ |.|.+|||+|..|++|+.|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd- 110 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND- 110 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC-
Confidence 45788999999999999999887 44542210 110 11 1124555 9999999999999999999
Q ss_pred CCCCcCCCccEEEEEEccCCce-----eeeccCCCcccccCCCCCcCCCCcCeEEecCC---CCCEEEEec--CCeEEEE
Q 005140 276 PSNPRDANRVVINIFDVRTGKV-----MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG---KDKYFAKLG--KNMISVY 345 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---dg~~la~~~--d~~i~iw 345 (712)
.+|++.-.....+ -..|..|.+.+. .++|-.. .+.+|++++ |..|.+-
T Consensus 111 ---------k~ik~l~fn~dt~~~~g~dle~nmhdgtir-------------dl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 111 ---------KTIKVLPFNADTCNATGHDLEFNMHDGTIR-------------DLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred ---------ceEEEEecccccccccCcceeeeecCCcee-------------eeEEecCCCcCceEEEecCCCcceEEEe
Confidence 8888875432211 123444444432 4666431 456888888 6666666
Q ss_pred EcCCceecccccccccCeeeE-EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEE
Q 005140 346 ETESFTLIDKKSLKVENVMDF-SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 424 (712)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~~-~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 424 (712)
|..+|+.+...+.|.+.|..+ .|+ |-.+++ |+.|.+++.|.+.++.--.
T Consensus 169 dc~~g~~~~a~sghtghilalyswn--~~m~~s-----gsqdktirfwdlrv~~~v~----------------------- 218 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILALYSWN--GAMFAS-----GSQDKTIRFWDLRVNSCVN----------------------- 218 (350)
T ss_pred ecCCCCcceeecCCcccEEEEEEec--CcEEEc-----cCCCceEEEEeeeccceee-----------------------
Confidence 777777776666777665543 443 556666 6677777766655432100
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 425 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+-+.. ....+ + ....|.+++..|.|+.|+++..|. ...+||++.+.
T Consensus 219 ---~l~~~--------------~~~~g-------l--essavaav~vdpsgrll~sg~~ds---sc~lydirg~r----- 264 (350)
T KOG0641|consen 219 ---TLDND--------------FHDGG-------L--ESSAVAAVAVDPSGRLLASGHADS---SCMLYDIRGGR----- 264 (350)
T ss_pred ---eccCc--------------ccCCC-------c--ccceeEEEEECCCcceeeeccCCC---ceEEEEeeCCc-----
Confidence 00000 00000 0 146788999999999999999998 89999998765
Q ss_pred eEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc-----eeee-eccccceeeEEECCCCCEEEEEEcc
Q 005140 505 SKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL-----ETMA-TAEHFMATDVEWDPTGRYVATAVTS 576 (712)
Q Consensus 505 ~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~-----~~~~-~~~~~~v~~~~~spdg~~l~t~s~~ 576 (712)
.+..+..| .|.++.|||...|++++++ |..|++-|++.- ..+. ..|...+..+.|.|..--+++.+.
T Consensus 265 -~iq~f~phsadir~vrfsp~a~yllt~sy---d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa- 339 (350)
T KOG0641|consen 265 -MIQRFHPHSADIRCVRFSPGAHYLLTCSY---DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA- 339 (350)
T ss_pred -eeeeeCCCccceeEEEeCCCceEEEEecc---cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC-
Confidence 67777655 5899999999999999999 999999999831 1122 245577788999999888888888
Q ss_pred ceeccccEEEEEecC
Q 005140 577 VHEMENGFNIWSFNG 591 (712)
Q Consensus 577 ~~~~d~~v~iw~~~g 591 (712)
|.+..+|.++|
T Consensus 340 ----dkt~tlwa~~~ 350 (350)
T KOG0641|consen 340 ----DKTATLWALNG 350 (350)
T ss_pred ----cceEEEeccCC
Confidence 99999998764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=184.76 Aligned_cols=271 Identities=17% Similarity=0.260 Sum_probs=204.1
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
...+|...+..+.|-++...|++++.| ..|.+|++..++ .+.++.+..+.+. .+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~D----------r~Ik~W~v~~~k~~~~~tLaGs~g~it-------------~~d 226 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSD----------RIIKLWNVLGEKSELISTLAGSLGNIT-------------SID 226 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchh----------hhhhhhhcccchhhhhhhhhccCCCcc-------------eee
Confidence 334455569999999998999999999 899999986655 4566666655543 688
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|.+ ++++++..+ |+.+++|++....+...+++|.+.|+++.|.-....++. ++.|.++++|.+. .....+
T Consensus 227 ~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs-----gs~DRtiK~WDl~--k~~C~k- 297 (459)
T KOG0288|consen 227 FDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS-----GSADRTIKLWDLQ--KAYCSK- 297 (459)
T ss_pred ecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee-----ccccchhhhhhhh--hhheec-
Confidence 988 888777777 999999999999999999999999999999877666666 6677666655432 111000
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
. + + ....+.+++.+ ...+++++.|
T Consensus 298 -t-----------------~----------------------------------l--~~S~cnDI~~~--~~~~~SgH~D 321 (459)
T KOG0288|consen 298 -T-----------------V----------------------------------L--PGSQCNDIVCS--ISDVISGHFD 321 (459)
T ss_pred -c-----------------c----------------------------------c--ccccccceEec--ceeeeecccc
Confidence 0 0 0 02233334433 4557777888
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec------cccc
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA------EHFM 557 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~------~~~~ 557 (712)
+ +|++||+++.. +....+ ++.|+++..+++|..|.+++. |.++.+.|+.+.++.... ....
T Consensus 322 k---kvRfwD~Rs~~------~~~sv~~gg~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 322 K---KVRFWDIRSAD------KTRSVPLGGRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred c---ceEEEeccCCc------eeeEeecCcceeeEeeccCCeEEeeecC---CCceeeeecccccEEEEeeccccccccc
Confidence 8 89999998765 455555 447999999999999999987 999999999987766542 1234
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee----cc-cceeeeEEecCCCCCCChhhHHHH
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT----LK-DHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~----~~-~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.+.+.|||+|.|+++|+. |+.|+||++.+..+... +. ..|++++|+|.|..|++++.++.+
T Consensus 390 wtrvvfSpd~~YvaAGS~-----dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSA-----DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred cceeEECCCCceeeeccC-----CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 788999999999999999 99999999885544433 22 269999999999999998876543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=169.35 Aligned_cols=279 Identities=14% Similarity=0.184 Sum_probs=193.7
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc----ccccCeeeEEECCCC
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS----LKVENVMDFSWSPTD 372 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~ 372 (712)
+..+++|...++ +++||. ||++||+++ |++|++|++..+....... ...+..+.+.|+||-
T Consensus 79 ~~~LKgH~~~vt-------------~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 79 VSVLKGHKKEVT-------------DVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhhhhccCCcee-------------eeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 456778888775 799999 999999999 9999999998765433221 233456889999998
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCcc-------cee---eeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKE-------ELR---QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~-------~~~---~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.+++++. .+...+++...-.+.. ... ....+.+....+-....+.+|++++.+.. +
T Consensus 145 ~s~vv~~~----~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~---------i 211 (420)
T KOG2096|consen 145 KSVVVSVK----RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK---------I 211 (420)
T ss_pred ceEEEEEc----cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc---------E
Confidence 88887643 3344444443322211 011 11223444455556678889999988877 8
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc-c-cCceeEEEEeCCC--ceeEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ-H-AGRVSKLTTLKGK--QANAL 518 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~-~-~~~~~~~~~~~~~--~v~~l 518 (712)
.||++... .... +......-+..+.||+|+++++++-.- .|++|.+--+. + -.....+..+.+| .|..+
T Consensus 212 ~lw~lkGq--~L~~--idtnq~~n~~aavSP~GRFia~~gFTp---DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 212 CLWDLKGQ--LLQS--IDTNQSSNYDAAVSPDGRFIAVSGFTP---DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred EEEecCCc--eeee--eccccccccceeeCCCCcEEEEecCCC---CceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 99998732 2111 111233455678999999999987755 79999974221 1 1223455667777 58999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCc-------ceeeeec------cccceeeEEECCCCCEEEEEEccceeccccEE
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDE-------LETMATA------EHFMATDVEWDPTGRYVATAVTSVHEMENGFN 585 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~-------~~~~~~~------~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~ 585 (712)
+|||+.+.+++.+. ||.++|||.+- .+++..+ ..+....++.||.|+.||.+.. ..++
T Consensus 285 aFsn~S~r~vtvSk---DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g------s~l~ 355 (420)
T KOG2096|consen 285 AFSNSSTRAVTVSK---DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG------SDLK 355 (420)
T ss_pred eeCCCcceeEEEec---CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC------CceE
Confidence 99999999999999 99999999872 2223222 1233448999999999998887 6788
Q ss_pred EEEec-Cce---eeeecccceeeeEEecCCCCCCChhh
Q 005140 586 IWSFN-GKL---LYRTLKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 586 iw~~~-g~~---~~~~~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
++... |+. +...|.+.|.+++|+|+|++++|+++
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 88765 443 33457889999999999999999875
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-19 Score=171.58 Aligned_cols=286 Identities=13% Similarity=0.153 Sum_probs=204.7
Q ss_pred EEEecCc--eEEeecccCcceeeeecCCC----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee-ec
Q 005140 229 ATVHRQG--AAVWGGANTFNRLMRYAHPQ----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR-DF 301 (712)
Q Consensus 229 at~~~~~--i~iw~~~~~~~~~~~~~~~~----v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~-~~ 301 (712)
.+++.+. +.+||+. ++....++.... -..-+. .+.|++++.... ..|.+|.+....... .+
T Consensus 11 sssS~d~~~~~~~dl~-TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~r---------p~l~vw~i~k~~~~~q~~ 78 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLR-TGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKR---------PLLHVWEILKKDQVVQYI 78 (476)
T ss_pred eccCCCCcceeEEecC-CCceeEEecCcccccchhhhhh--chhheeeecccC---------ccccccccCchhhhhhhc
Confidence 3344443 6799999 777777775331 111122 237888877662 368899985444333 11
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEee
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~ 380 (712)
..+ +.+. +++-+| +|.|++.++ .+.|++|.+.+|.++.....|...|+++.|+-||.+|++
T Consensus 79 v~P-g~v~-------------al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT--- 140 (476)
T KOG0646|consen 79 VLP-GPVH-------------ALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT--- 140 (476)
T ss_pred ccc-ccee-------------eeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe---
Confidence 111 1111 678899 999999997 999999999999999988899999999999999999999
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
+|.|+.+.+|..-. ..+++... .+.....+.
T Consensus 141 --gskDg~V~vW~l~~-------------------lv~a~~~~----------------------------~~~p~~~f~ 171 (476)
T KOG0646|consen 141 --GSKDGAVLVWLLTD-------------------LVSADNDH----------------------------SVKPLHIFS 171 (476)
T ss_pred --cCCCccEEEEEEEe-------------------ecccccCC----------------------------Cccceeeec
Confidence 88999888886531 01111111 111113345
Q ss_pred CCCCceEEEEEeeC--CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCc
Q 005140 461 NKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNG 537 (712)
Q Consensus 461 ~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg 537 (712)
.|.-+|+++...+. ..++++++.|. ++++||+..+. ++.++. ..++++++.+|-++.+++|+. +|
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~---t~k~wdlS~g~------LLlti~fp~si~av~lDpae~~~yiGt~---~G 239 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDR---TIKLWDLSLGV------LLLTITFPSSIKAVALDPAERVVYIGTE---EG 239 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCc---eEEEEEeccce------eeEEEecCCcceeEEEcccccEEEecCC---cc
Confidence 78888999887764 46899999999 99999998765 454443 557899999999999999998 99
Q ss_pred eEEEEECCcce----------------e--eeecccc--ceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee-
Q 005140 538 QLEFYNVDELE----------------T--MATAEHF--MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR- 596 (712)
Q Consensus 538 ~v~iwd~~~~~----------------~--~~~~~~~--~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~- 596 (712)
.|.+.++.+.. . ...+|.. .|++++.|-||..|++|+. ||.|.|||+...++.+
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-----dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-----DGKVCVWDIYSKQCIRT 314 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC-----CCCEEEEecchHHHHHH
Confidence 99998875321 1 1124555 8999999999999999999 9999999998654332
Q ss_pred e--cccceeeeEEecC
Q 005140 597 T--LKDHFFQFLWRPR 610 (712)
Q Consensus 597 ~--~~~~i~~~~w~p~ 610 (712)
. ..++|+.+.+.|-
T Consensus 315 l~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 315 LQTSKGPVTNLQINPL 330 (476)
T ss_pred HhhhccccceeEeecc
Confidence 2 2366666666543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=174.12 Aligned_cols=268 Identities=12% Similarity=0.223 Sum_probs=203.2
Q ss_pred eEEEEECC-eeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEE
Q 005140 184 QFVIRSGT-DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLID 260 (712)
Q Consensus 184 ~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~ 260 (712)
.++.+.|. ..+++++. ...+....|+||...|+.+.|+|+...+++++.+. |+||.............|. .|+.+.
T Consensus 232 ~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 34445554 48889888 57778889999999999999999999999999998 7899987444444444455 599999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K 339 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d 339 (712)
.+|.|.||++++.+ ++..+.|+++|..+.........+ .+.+.+|+| ||.+|+++. |
T Consensus 311 ~h~tgeYllsAs~d----------~~w~Fsd~~~g~~lt~vs~~~s~v-----------~~ts~~fHp-DgLifgtgt~d 368 (506)
T KOG0289|consen 311 LHPTGEYLLSASND----------GTWAFSDISSGSQLTVVSDETSDV-----------EYTSAAFHP-DGLIFGTGTPD 368 (506)
T ss_pred eccCCcEEEEecCC----------ceEEEEEccCCcEEEEEeeccccc-----------eeEEeeEcC-CceEEeccCCC
Confidence 99999999999999 999999999999887665542222 133789999 999999999 9
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
+.++|||+.+...+.++..|.+.|..++|+-+|-+|++ +..|+.+++ ||+...+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat-----~add~~V~l--wDLRKl~------------------- 422 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT-----AADDGSVKL--WDLRKLK------------------- 422 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE-----EecCCeEEE--EEehhhc-------------------
Confidence 99999999998888888889999999999999999998 555555443 3332211
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
....+.+.. ...+.++.|.+.|.+|++++. .|+||-.....
T Consensus 423 ---------------------------------n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 423 ---------------------------------NFKTIQLDE-KKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKT 463 (506)
T ss_pred ---------------------------------ccceeeccc-cccceeEEEcCCCCeEEeecc-----eeEEEEEeccc
Confidence 111122211 336889999999999999966 45555443222
Q ss_pred ccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 500 HAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 500 ~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
..+..+..+..+ ..+++.|..+.+++++++. |..++++.+
T Consensus 464 --k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm---d~~l~~~a~ 505 (506)
T KOG0289|consen 464 --KSWTEIKELADHSGLSTGVRFGEHAQYLASTSM---DAILRLYAL 505 (506)
T ss_pred --ccceeeehhhhcccccceeeecccceEEeeccc---hhheEEeec
Confidence 224456655544 5788999999999999998 888888754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=163.60 Aligned_cols=241 Identities=15% Similarity=0.166 Sum_probs=181.1
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCC--EEEEEcCCCCCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEK--YLVTYSSHEPSNP 279 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~--~l~t~s~d~~~~~ 279 (712)
+...++.|..++++++.| |.|+|+|+.|. |.|||.. +...+..+ .|.+ |+++.|.++-. .|++|+.|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~-k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD----- 106 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR-KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD----- 106 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEecc-chhhhcceeccccceEEEEecCCcchhheeeecCC-----
Confidence 355778999999999987 89999999988 8899999 66655554 5655 99999999875 89999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
|.|.+|++..-.++.++++|...++ .++..| .|++..+.+ |+.+++|++-+|+.-....+
T Consensus 107 -----G~i~iw~~~~W~~~~slK~H~~~Vt-------------~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 107 -----GHIIIWRVGSWELLKSLKAHKGQVT-------------DLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred -----CcEEEEEcCCeEEeeeecccccccc-------------eeEecC-CCceEEEEcCCceeeeehhhcCccceeecc
Confidence 9999999999999999999988764 689999 999888877 99999999988775443333
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
... ...+.|+|.|.++++.. ..+|-+|.+..-+.+...... .....+.| -++..|+++.++..
T Consensus 168 ~~~-at~v~w~~~Gd~F~v~~--------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~-l~~~~L~vG~d~~~------ 230 (362)
T KOG0294|consen 168 KNK-ATLVSWSPQGDHFVVSG--------RNKIDIYQLDNASVFREIENP-KRILCATF-LDGSELLVGGDNEW------ 230 (362)
T ss_pred CCc-ceeeEEcCCCCEEEEEe--------ccEEEEEecccHhHhhhhhcc-ccceeeee-cCCceEEEecCCce------
Confidence 222 34489999999888732 224666666554433322211 11222223 35678888888765
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEE--eeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAW--EPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~--sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+.+|+-+.. .+ ...+.+|...|.++.+ .|++.+|++++.|| .|++||++..
T Consensus 231 ---i~~~D~ds~-~~--~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ---ISLKDTDSD-TP--LTEFLAHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDIDME 283 (362)
T ss_pred ---EEEeccCCC-cc--ceeeecchhheeeeEEEecCCceEEEEeccCc---eEEEEEcccc
Confidence 667776542 22 2456689999999874 56789999999999 9999999754
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=178.16 Aligned_cols=271 Identities=13% Similarity=0.254 Sum_probs=200.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
.|.+|+++.|+|.-..|++++.| ++++||.+ +|+ .+..+.....++. +.+|.|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d----------~~lrifqv-DGk~N~~lqS~~l~~fPi~-------------~a~f~p 267 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLD----------GTLRIFQV-DGKVNPKLQSIHLEKFPIQ-------------KAEFAP 267 (514)
T ss_pred CcCCceEEEecCCCceEEEecCC----------CcEEEEEe-cCccChhheeeeeccCccc-------------eeeecC
Confidence 35679999999999999999999 99999987 443 3444443333331 578999
Q ss_pred CCCC-EEEEec-CCeEEEEEcCCceecccccc---cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 329 GKDK-YFAKLG-KNMISVYETESFTLIDKKSL---KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 329 ~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
+|+ .+++++ ...+..||+.+.+...-... ....+..+..||++++|++ .+..+.|.++...+++.+
T Consensus 268 -~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~-------~G~~G~I~lLhakT~eli- 338 (514)
T KOG2055|consen 268 -NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI-------AGNNGHIHLLHAKTKELI- 338 (514)
T ss_pred -CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEE-------cccCceEEeehhhhhhhh-
Confidence 998 777777 88899999998775532221 1235788999999999998 344444444332222111
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
..+.+ .+.|.+++|+.+|+.|+++++
T Consensus 339 ---------------------------------------------------~s~Ki---eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 339 ---------------------------------------------------TSFKI---EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ---------------------------------------------------heeee---ccEEeeEEEecCCcEEEEEcC
Confidence 11233 788999999999999999999
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeC-CC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc------eeeeec-
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL------ETMATA- 553 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~------~~~~~~- 553 (712)
+| .|++||++... .++.+. .+ .-++++.|++|.|||+|+. .|.|.|||.++. +.+.+.
T Consensus 365 ~G---eV~v~nl~~~~------~~~rf~D~G~v~gts~~~S~ng~ylA~GS~---~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 365 TG---EVYVWNLRQNS------CLHRFVDDGSVHGTSLCISLNGSYLATGSD---SGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred Cc---eEEEEecCCcc------eEEEEeecCccceeeeeecCCCceEEeccC---cceEEEeccchhhccCCCCchhhhh
Confidence 99 99999997653 444443 22 3478999999999999998 999999997632 223332
Q ss_pred -cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee------ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 554 -EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR------TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 554 -~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~------~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
-...|++++|+||++.||.+|. ..++.+++-.+....++. ...+.+++++|+|.+-+++.+.+.+.+.
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~---~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASR---VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhh---ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 2367899999999999999987 347899998876554442 2457899999999999999988877654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=188.20 Aligned_cols=229 Identities=14% Similarity=0.221 Sum_probs=164.0
Q ss_pred cccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCc------ceeeee-cCC-CeeEEEecCCC-CEEEEEcCCCC
Q 005140 208 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF------NRLMRY-AHP-QVKLIDFSPGE-KYLVTYSSHEP 276 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~------~~~~~~-~~~-~v~~i~~Spdg-~~l~t~s~d~~ 276 (712)
.+.+|...|++++|+| ++.+||+++.|+ |+||++.... ..+..+ .|. .|.+++|+|++ .+|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-- 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-- 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC--
Confidence 4789999999999999 899999999999 8899987221 123333 344 59999999986 699999999
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
++|+|||+.+++.+..+.+|...+. +++|+| +|.+|++++ |+.|+|||+.+++.+..
T Consensus 148 --------gtVrIWDl~tg~~~~~l~~h~~~V~-------------sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 148 --------MVVNVWDVERGKAVEVIKCHSDQIT-------------SLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred --------CEEEEEECCCCeEEEEEcCCCCceE-------------EEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 9999999999999999988877653 799999 999999999 99999999998887665
Q ss_pred ccccccC-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeee-ecceeEEECcCCCEEEEEEc-cc
Q 005140 356 KSLKVEN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFS-VSDCKMYWQSSGDYLAVKVD-RY 431 (712)
Q Consensus 356 ~~~~~~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~~~~~~s~~g~~l~~~~~-~~ 431 (712)
...|... +..+.|+|++..|++... +......|.+|++.... .+....... .......|++++..|++++. ++
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~---s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGC---SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEec---CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence 5555543 456789998877765210 11223345555654432 222222221 12233468999999988763 55
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
. +++|++.... ....... .+..++..++|.|.
T Consensus 283 ~---------Iriwdl~~~~-~~~~~~~-~s~~~~~g~~~~pk 314 (493)
T PTZ00421 283 N---------IRCFELMNER-LTFCSSY-SSVEPHKGLCMMPK 314 (493)
T ss_pred e---------EEEEEeeCCc-eEEEeec-cCCCCCcceEeccc
Confidence 5 8999998643 2222222 34566778888874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=160.94 Aligned_cols=269 Identities=13% Similarity=0.164 Sum_probs=188.9
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
...|+.+.|||.+..|+.++-|| +++|++. .......+.|.. +.+++|.+ ...+++|+.| |.|+.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~d----------g~vr~~ 80 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLD----------GQVRRY 80 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEecc-chhhhhheecCCceeeeeccC-CceEEEeccC----------ceEEEE
Confidence 46789999999999999999999 8999999 677777777765 99999987 5678999999 999999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEEC
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 369 (712)
|+.++.... +..|...+. ++..++ -...+++++ |++|++||.......... -....|.++
T Consensus 81 Dln~~~~~~-igth~~~i~-------------ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~--- 141 (323)
T KOG1036|consen 81 DLNTGNEDQ-IGTHDEGIR-------------CIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCM--- 141 (323)
T ss_pred EecCCccee-eccCCCceE-------------EEEeec-cCCeEEEcccCccEEEEecccccccccc-ccCceEEEE---
Confidence 998877544 334444432 788888 777788888 999999998842221110 000112222
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+-.|..|+++..+.. +.+|+++.
T Consensus 142 ------------------------------------------------~v~g~~LvVg~~~r~---------v~iyDLRn 164 (323)
T KOG1036|consen 142 ------------------------------------------------DVSGNRLVVGTSDRK---------VLIYDLRN 164 (323)
T ss_pred ------------------------------------------------eccCCEEEEeecCce---------EEEEEccc
Confidence 223444445444433 45666665
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee----cccccCceeEEEEeC-----CCceeEEEE
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR----TAQHAGRVSKLTTLK-----GKQANALFW 520 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~----~~~~~~~~~~~~~~~-----~~~v~~l~~ 520 (712)
...+.... -..-+..+.++++-|++.-+++++-+|.. .+..+|.. ..+.. ++...... ..+|++++|
T Consensus 165 ~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~~skkya--FkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 165 LDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEAQSKKYA--FKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred ccchhhhc-cccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHHhhhcee--EEeeecccCCceEEEEeceeEe
Confidence 44433111 11226788999999999999999999822 34445544 11111 12222211 127899999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--cceeeEEECCCCCEEEEEEcc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRYVATAVTS 576 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~~~~~spdg~~l~t~s~~ 576 (712)
+|--..+++|+. ||.|.+||+.+.+.+...+. ..|.+++|+.||..||+++..
T Consensus 241 hp~~~tfaTgGs---DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 241 HPIHGTFATGGS---DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ccccceEEecCC---CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 999999999998 99999999998888887665 468999999999999999874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=169.06 Aligned_cols=285 Identities=15% Similarity=0.198 Sum_probs=217.9
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....|.+|...|..++-......+.+++.|. ..||.++ ++.++.++ .|.+ |.+|.|++.+..+++++.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD------ 211 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHNSGLLLLTASGD------ 211 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeec-cccceeeecccccceeeEEeccccceEEEccCC------
Confidence 34556789999988888777777899999998 5699999 88988888 3555 9999999999999999999
Q ss_pred CCCccEEEEEEc------cC------------------------------C----ceeeeccCCCcccccCCCCCcCCCC
Q 005140 281 DANRVVINIFDV------RT------------------------------G----KVMRDFKGSADEFAVGGTGGVAGVS 320 (712)
Q Consensus 281 ~~~~~~I~iwd~------~~------------------------------g----~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (712)
++..||.. .. | .++..|.+|...+.
T Consensus 212 ----~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~----------- 276 (481)
T KOG0300|consen 212 ----ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS----------- 276 (481)
T ss_pred ----cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE-----------
Confidence 66677752 10 0 12334555554442
Q ss_pred cCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 321 WPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 321 ~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+..|-. .|+.+++++ |.+..+||++++.++..+..|....+..+-+|..+++++ ++.|.+.++|.|.
T Consensus 277 --a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvT-----sSrDtTFRLWDFR---- 344 (481)
T KOG0300|consen 277 --ACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVT-----SSRDTTFRLWDFR---- 344 (481)
T ss_pred --ehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEE-----eccCceeEeccch----
Confidence 567888 899999999 999999999999999888888887888888888777777 5566665555543
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
+. ++ ..--+.+|...|++..|.-+ ..++
T Consensus 345 -------------------------------------------------ea-I~-sV~VFQGHtdtVTS~vF~~d-d~vV 372 (481)
T KOG0300|consen 345 -------------------------------------------------EA-IQ-SVAVFQGHTDTVTSVVFNTD-DRVV 372 (481)
T ss_pred -------------------------------------------------hh-cc-eeeeecccccceeEEEEecC-Ccee
Confidence 11 11 01225689999999999854 5678
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee------e
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA------T 552 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~------~ 552 (712)
+++.|. +|++||+++... ++.++. ..+++-++.+..+..|++--. +..|++||+++..+.. .
T Consensus 373 SgSDDr---TvKvWdLrNMRs-----plATIRtdS~~NRvavs~g~~iIAiPhD---NRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 373 SGSDDR---TVKVWDLRNMRS-----PLATIRTDSPANRVAVSKGHPIIAIPHD---NRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred ecCCCc---eEEEeeeccccC-----cceeeecCCccceeEeecCCceEEeccC---CceEEEEecCCCccccCCccccc
Confidence 888888 999999987654 566665 457899999998888888776 8899999999654432 3
Q ss_pred ccccceeeEEECCCC--CEEEEEEccceeccccEEEEEec
Q 005140 553 AEHFMATDVEWDPTG--RYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 553 ~~~~~v~~~~~spdg--~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|..+|++++|..+- ..|++++. |..+.=|+++
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGF-----DR~v~gW~in 476 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGF-----DRMVAGWKIN 476 (481)
T ss_pred ccceeeeeeeccccCcccccccccc-----cceeeeeEec
Confidence 677899999998653 35778888 8999999876
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=175.20 Aligned_cols=273 Identities=15% Similarity=0.189 Sum_probs=205.6
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
....|+|+++. ...+++|..|. |+|||.. +...+..+ +|.+ |.|+.| |.+.|++|+.| .+|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n-~~~c~~~L~GHtGSVLCLqy--d~rviisGSSD----------sTvr 260 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKN-SLECLKILTGHTGSVLCLQY--DERVIVSGSSD----------STVR 260 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccc-cHHHHHhhhcCCCcEEeeec--cceEEEecCCC----------ceEE
Confidence 44678899884 55789999998 8899998 66655544 4555 999988 56799999999 8999
Q ss_pred EEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec---ccccccccCee
Q 005140 289 IFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI---DKKSLKVENVM 364 (712)
Q Consensus 289 iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~---~~~~~~~~~v~ 364 (712)
|||+.+|+++.++-+|...+. .+.|+. .++++++ |.++.+|++.+...+ .....|...|+
T Consensus 261 vWDv~tge~l~tlihHceaVL-------------hlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVL-------------HLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred EEeccCCchhhHHhhhcceeE-------------EEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 999999999999999988763 577755 7899999 999999998855432 22345777889
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
.+.|+. ++|++ +++|.++++| ++.+.+.++..+.+.-.+.++ .-.|+++++++.+.+ +++
T Consensus 325 vVdfd~--kyIVs-----ASgDRTikvW--~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDnt---------IRl 384 (499)
T KOG0281|consen 325 VVDFDD--KYIVS-----ASGDRTIKVW--STSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNT---------IRL 384 (499)
T ss_pred eecccc--ceEEE-----ecCCceEEEE--eccceeeehhhhcccccceeh--hccCeEEEecCCCce---------EEE
Confidence 888864 58888 7788877755 556666677776666666555 456889999999988 899
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc---eeEEEEeC--CCceeEEE
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR---VSKLTTLK--GKQANALF 519 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~---~~~~~~~~--~~~v~~l~ 519 (712)
|++..... ...+.+|..-|.++.| |.+.+++|+.|| +|++||+.++..... ...+.++. .+.|..+.
T Consensus 385 wdi~~G~c---LRvLeGHEeLvRciRF--d~krIVSGaYDG---kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 385 WDIECGAC---LRVLEGHEELVRCIRF--DNKRIVSGAYDG---KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred EeccccHH---HHHHhchHHhhhheee--cCceeeeccccc---eEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 99875432 2346789999999999 678999999999 999999976543200 00112222 22455666
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
| |...+++++. |.+|.|||+.++.
T Consensus 457 F--D~fqIvsssH---ddtILiWdFl~~~ 480 (499)
T KOG0281|consen 457 F--DEFQIISSSH---DDTILIWDFLNGP 480 (499)
T ss_pred e--cceEEEeccC---CCeEEEEEcCCCC
Confidence 6 5678888888 9999999987553
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=184.68 Aligned_cols=239 Identities=11% Similarity=0.121 Sum_probs=161.2
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCcee-c-------c
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTL-I-------D 354 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~-~-------~ 354 (712)
+.|++|+......+..+.+|...+. +++|+| + +.+||+++ |++|+||++.++.. . .
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~-------------~lafsP-~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSIL-------------DLQFNP-CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEE-------------EEEEcC-CCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 7899999877778888999987764 799999 7 78999999 99999999985431 1 1
Q ss_pred cccccccCeeeEEECCCCCeE-EEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 355 KKSLKVENVMDFSWSPTDPII-SLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~l-a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
....|...|.+++|+|++..+ ++ ++.|+.++||
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaS-----gS~DgtIrIW----------------------------------------- 153 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCS-----SGFDSFVNIW----------------------------------------- 153 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEE-----EeCCCeEEEE-----------------------------------------
Confidence 122344557777777766544 33 3445444433
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK 513 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 513 (712)
++..... ...+ .|...|.+++|+|+|.+|++++.|+ .|+|||++++. .+..+.+|
T Consensus 154 ------------Dl~tg~~---~~~i-~~~~~V~SlswspdG~lLat~s~D~---~IrIwD~Rsg~------~i~tl~gH 208 (568)
T PTZ00420 154 ------------DIENEKR---AFQI-NMPKKLSSLKWNIKGNLLSGTCVGK---HMHIIDPRKQE------IASSFHIH 208 (568)
T ss_pred ------------ECCCCcE---EEEE-ecCCcEEEEEECCCCCEEEEEecCC---EEEEEECCCCc------EEEEEecc
Confidence 3322111 0112 2356799999999999999999888 99999998754 44555544
Q ss_pred --ce-----eEEEEccCCCeEEEEeccC-CCceEEEEECCc-ceeeeec-cc---cceeeEEECCCCCEEEEEEccceec
Q 005140 514 --QA-----NALFWSPSGRFIVLAGLKG-FNGQLEFYNVDE-LETMATA-EH---FMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 514 --~v-----~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~-~~~~~~~-~~---~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
.+ ....|++++.+|++++... .+++|+|||+++ .+.+... +. +.+......++|.++++|+.
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG----- 283 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG----- 283 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC-----
Confidence 22 2234579999999988621 124899999985 4444331 11 22223333556889999999
Q ss_pred cccEEEEEecCceeeee----cccceeeeEEecCCCC
Q 005140 581 ENGFNIWSFNGKLLYRT----LKDHFFQFLWRPRPPS 613 (712)
Q Consensus 581 d~~v~iw~~~g~~~~~~----~~~~i~~~~w~p~~~~ 613 (712)
|+.|++|++....+... +..++..++|.|....
T Consensus 284 D~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 284 DGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQIC 320 (568)
T ss_pred CCeEEEEEccCCcEEeecccccCCCccceEEcccccc
Confidence 99999999975443332 3366788999997543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=189.11 Aligned_cols=274 Identities=14% Similarity=0.214 Sum_probs=212.6
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee-e-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR-Y-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~-~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+...+.|.+|. +.++++++.+. +.+|+.. .+..+.. + .|. +|.+++|..-+.+|++|+.| .+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D----------~t 272 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD----------KT 272 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEecCCCEEEEEecC----------Cc
Confidence 356778899998 56788888888 6699999 5555544 4 455 59999999888999999999 99
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeee
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMD 365 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~ 365 (712)
++|||+.+|.+...+.+|...+ .+.+- .+.++++++ |.+|++|+++++..+.....|...|.+
T Consensus 273 ~rvWd~~sg~C~~~l~gh~stv---------------~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGHTSSV---------------RCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC 336 (537)
T ss_pred EEeEecCCCcEEEEecCCCceE---------------EEEEc-cCceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence 9999999999999999998775 23344 557777777 999999999999888777668888999
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
+..+ +.++++ |+.++.++||.+. . ++
T Consensus 337 v~~~--~~~lvs-----gs~d~~v~VW~~~--~----------------------~~----------------------- 362 (537)
T KOG0274|consen 337 VQLD--EPLLVS-----GSYDGTVKVWDPR--T----------------------GK----------------------- 362 (537)
T ss_pred EEec--CCEEEE-----EecCceEEEEEhh--h----------------------ce-----------------------
Confidence 8887 677776 6666666655432 1 01
Q ss_pred EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCC
Q 005140 446 RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGR 525 (712)
Q Consensus 446 ~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 525 (712)
....+.+|...|.++.+.+. .+++.++.|+ .|++||+.+.. ..+.++.++.-..-.....++
T Consensus 363 ---------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~---~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~ 424 (537)
T KOG0274|consen 363 ---------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT---TIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDN 424 (537)
T ss_pred ---------eeeeecCCcceEEEEEecCc-ceEEeeeecc---ceEeecCCchh-----hhhhhhcCCcccccccccccc
Confidence 11345689999999987665 8999999998 99999998762 266777766433344555788
Q ss_pred eEEEEeccCCCceEEEEECCcceeeeec---cccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceee
Q 005140 526 FIVLAGLKGFNGQLEFYNVDELETMATA---EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLY 595 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~~~~~~~~---~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~ 595 (712)
+|++++. |++|++||..+++++.+. |...++.+++. -..+++++. |+.+.+||+. +....
T Consensus 425 ~Lvs~~a---D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~-----~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 425 FLVSSSA---DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD-----DGSVKLWDLRSGTLIR 488 (537)
T ss_pred eeEeccc---cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec-----CCeeEEEecccCchhh
Confidence 9999998 999999999998888763 44778888877 456778888 8999999987 44333
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=177.43 Aligned_cols=263 Identities=14% Similarity=0.227 Sum_probs=200.8
Q ss_pred ceEEEEECCeeEEEecCCCCC--CCcccc--cCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce--eeeecC--
Q 005140 183 DQFVIRSGTDTEVLWNDARHL--KPEPVY--KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR--LMRYAH-- 253 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~--~~~~~~-- 253 (712)
.+.+.+.|.+.+.+|++...+ .++..+ ......++++..+|||+.|++|+.-. +.|||+. .-.. ...+..
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA-apTprikaeltssa 509 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA-APTPRIKAELTSSA 509 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc-CCCcchhhhcCCcc
Confidence 456778889999999984332 233333 22346788999999999999999866 7799987 3322 223333
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
+....++.|||.+..+++..| |.|.|||+.+...++.|++|.+... |+..++ ||..
T Consensus 510 paCyALa~spDakvcFsccsd----------GnI~vwDLhnq~~VrqfqGhtDGas-------------cIdis~-dGtk 565 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSD----------GNIAVWDLHNQTLVRQFQGHTDGAS-------------CIDISK-DGTK 565 (705)
T ss_pred hhhhhhhcCCccceeeeeccC----------CcEEEEEcccceeeecccCCCCCce-------------eEEecC-CCce
Confidence 458889999999999999999 9999999999999999999988764 899999 9999
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|-+++ |++|+-||+..+..+....+. ..|.++..+|.+.+|++ +-....+++......+ -.+..++....
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlav-------GMens~vevlh~skp~-kyqlhlheScV 636 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAV-------GMENSNVEVLHTSKPE-KYQLHLHESCV 636 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhhhh-hhheecccCCCccceee-------ecccCcEEEEecCCcc-ceeecccccEE
Confidence 99999 999999999988776544333 34889999999999999 3444456665543322 22334456667
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.++.|.+.|++++....|+....|.+..+..||...+ ...|.+..+|-|.++|+++++|. ...+
T Consensus 637 LSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-------------~SsVlsCDIS~ddkyIVTGSGdk---kATV 700 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------SSSVLSCDISFDDKYIVTGSGDK---KATV 700 (705)
T ss_pred EEEEecccCceeeecCchhhhhhccCccccceeeccc-------------cCcceeeeeccCceEEEecCCCc---ceEE
Confidence 7889999999999988887755555444445554432 67899999999999999999998 6777
Q ss_pred EEe
Q 005140 493 YSM 495 (712)
Q Consensus 493 ~d~ 495 (712)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=173.36 Aligned_cols=270 Identities=14% Similarity=0.284 Sum_probs=186.5
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
.+++..+-|+|. |+++..++... +++. ..+.....+++|..+|+|++||.||+.+|+|+.|. |+||+.. .+-+.
T Consensus 14 ci~d~afkPDGs-qL~lAAg~rll-iyD~-ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k--lEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGT-QLILAAGSRLL-VYDT-SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK--LEGIL 88 (1081)
T ss_pred chheeEECCCCc-eEEEecCCEEE-EEeC-CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc--cccee
Confidence 456677778887 55666666554 6776 67888899999999999999999999999999999 7899987 55667
Q ss_pred eecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 250 RYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 250 ~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
++.|.+ |.|+.|+|....|++++-. ..-+|..... .+...+...... +++|..
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-----------dFglWS~~qK-~V~K~kss~R~~--------------~CsWtn 142 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-----------DFGLWSPEQK-SVSKHKSSSRII--------------CCSWTN 142 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-----------hccccChhhh-hHHhhhhheeEE--------------EeeecC
Confidence 777776 9999999999999999976 3558985332 222222222221 689999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCCC-----CeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 329 GKDKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPTD-----PIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
||+|++.+- +|+|.|-+...-. .+.......++|.+++|+|.. ..+++ .-.+++ +..+.+.. +
T Consensus 143 -DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV-----~DW~qT--LSFy~LsG-~ 213 (1081)
T KOG1538|consen 143 -DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV-----ADWGQT--LSFYQLSG-K 213 (1081)
T ss_pred -CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE-----Eeccce--eEEEEecc-e
Confidence 999999998 9999988644211 222233455679999999973 34444 112222 22232221 2
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.+..........+++.+-++|.|++++..++. +.+|.-. +... -++......|++++..|++++++.
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~---------L~~fTR~--GvrL--GTvg~~D~WIWtV~~~PNsQ~v~~ 280 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQ---------LSLFTRD--GVRL--GTVGEQDSWIWTVQAKPNSQYVVV 280 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEccCCCc---------eEEEeec--CeEE--eeccccceeEEEEEEccCCceEEE
Confidence 22211112344566788899999999988866 5555432 2211 122223678999999999999999
Q ss_pred EEcCCCCCeEEEEEee
Q 005140 481 IHGDSPRPDISFYSMR 496 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~ 496 (712)
|..|| +|--|++-
T Consensus 281 GCqDG---TiACyNl~ 293 (1081)
T KOG1538|consen 281 GCQDG---TIACYNLI 293 (1081)
T ss_pred EEccC---eeehhhhH
Confidence 99999 77777653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=162.46 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=205.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEEE
Q 005140 108 SLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVI 187 (712)
Q Consensus 108 ~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 187 (712)
..||+ |+|+--.+-..|+..-..+-|.|+-+|.+--..+-..+. ....|.-.+.|.+..-.+...+|.++
T Consensus 9 f~Gys-vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~---------e~~s~d~~D~LfdV~Wse~~e~~~~~ 78 (311)
T KOG0277|consen 9 FHGYS-VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ---------ECQSYDTEDGLFDVAWSENHENQVIA 78 (311)
T ss_pred cccce-eEecccccchhheeehhhcccccCceEEEEecCCCCCeE---------EEEeeecccceeEeeecCCCcceEEE
Confidence 34554 555544444555555455555554444444333222221 11233344556666777888899999
Q ss_pred EECCeeEEEecCCCCCCCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEEecC
Q 005140 188 RSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSP 263 (712)
Q Consensus 188 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~~Sp 263 (712)
..||+...+|+.+....|+..++.|...|.++.|++ ++..+++++-|+ |+||+.. ....+.+|. |.. |....|||
T Consensus 79 a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred EecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeecCCccEEEEEecCC
Confidence 999999999999888899999999999999999998 456677788888 8899998 777777774 554 99999999
Q ss_pred C-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCe
Q 005140 264 G-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM 341 (712)
Q Consensus 264 d-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~ 341 (712)
- ...+++++.| +++++||++.......+..|...+. ++.|+.-+...+++++ |+.
T Consensus 158 ~~~nlfas~Sgd----------~~l~lwdvr~~gk~~~i~ah~~Eil-------------~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 158 HIPNLFASASGD----------GTLRLWDVRSPGKFMSIEAHNSEIL-------------CCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred CCCCeEEEccCC----------ceEEEEEecCCCceeEEEeccceeE-------------eecccccCCcEEEecCCCce
Confidence 4 6889999999 9999999975443344888875553 6788874556788888 999
Q ss_pred EEEEEcCCce-ecccccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 342 ISVYETESFT-LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 342 i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
|++||+...+ .+.....|.-.|..+.|||.. ..|++ ++-|.+.+||.+..+..
T Consensus 215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS-----asYDmT~riw~~~~~ds-------------------- 269 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS-----ASYDMTVRIWDPERQDS-------------------- 269 (311)
T ss_pred EEEEehhhccccceeecCCceEEEEEecCcchhhHhhh-----ccccceEEecccccchh--------------------
Confidence 9999998655 333334455568899999974 45566 66777777765432110
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEe
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
.+ .+..-|..-+..+.||+ ++.++|.++-|. .++||+.
T Consensus 270 ---------------------------------~~--e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe---~l~Vw~p 308 (311)
T KOG0277|consen 270 ---------------------------------AI--ETVDHHTEFVCGLDWSLFDPGQVASTGWDE---LLYVWNP 308 (311)
T ss_pred ---------------------------------hh--hhhhccceEEeccccccccCceeeeccccc---ceeeecc
Confidence 00 01123566777888888 677888888898 8999974
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-19 Score=174.81 Aligned_cols=297 Identities=14% Similarity=0.200 Sum_probs=209.7
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCC--EEEEEcCCC--CCCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEK--YLVTYSSHE--PSNP 279 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~--~l~t~s~d~--~~~~ 279 (712)
...|.+|...|.|++..|.|.+||+|+.+| ++||.+. ++.++.++...+ |.||+|+|.+. .||++-... ..++
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 346789999999999999999999999999 8899999 999999998766 99999999875 344443331 0000
Q ss_pred --------------------cCCCccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 280 --------------------RDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 280 --------------------~~~~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.......+..|.-...+ -++....|...+ + .+.|+. .|.||+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i--------~-----~vtWHr-kGDYla 537 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI--------R-----QVTWHR-KGDYLA 537 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc--------c-----eeeeec-CCceEE
Confidence 01222344455422110 011111222222 1 689999 999999
Q ss_pred Eec----CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 336 KLG----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 336 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
+.. ...|.|+++........+....+.|.++.|+|...+|++.+ .. .|.+|++.....+.....+...
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT------q~--~vRiYdL~kqelvKkL~tg~kw 609 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT------QR--SVRIYDLSKQELVKKLLTGSKW 609 (733)
T ss_pred EeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe------cc--ceEEEehhHHHHHHHHhcCCee
Confidence 887 46799999986665544444555699999999999888732 22 3666777664433332223333
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
...|+.+|.|..|++++.++. +..|+++....|... +.-|...+++++|++.-..||+++.|+ ++.
T Consensus 610 iS~msihp~GDnli~gs~d~k---------~~WfDldlsskPyk~--lr~H~~avr~Va~H~ryPLfas~sdDg---tv~ 675 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGSYDKK---------MCWFDLDLSSKPYKT--LRLHEKAVRSVAFHKRYPLFASGSDDG---TVI 675 (733)
T ss_pred eeeeeecCCCCeEEEecCCCe---------eEEEEcccCcchhHH--hhhhhhhhhhhhhccccceeeeecCCC---cEE
Confidence 445677999999999998877 788899887777644 445889999999999999999999999 677
Q ss_pred EEEee---cccccCceeEEEEeCCCc------eeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 492 FYSMR---TAQHAGRVSKLTTLKGKQ------ANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 492 i~d~~---~~~~~~~~~~~~~~~~~~------v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
+|--. ....+.-+.+++.+.+|. |....|+|...+|++++. ||+|++|
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA---d~tirlf 732 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA---DGTIRLF 732 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC---CceEEee
Confidence 66421 111223356778888774 456779999999999998 9999998
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=159.51 Aligned_cols=246 Identities=14% Similarity=0.267 Sum_probs=186.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC---ceeeeccCCCcccccCCCCCcCCCCcCeEEecC-CC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG-GK 330 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~d 330 (712)
-|.++...-.|++|||++.| ++|+|+.++.+ +++.++.+|.+++ |. +.|.. .-
T Consensus 13 ~IHda~lDyygkrlATcsSD----------~tVkIf~v~~n~~s~ll~~L~Gh~GPV------------wq-v~wahPk~ 69 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSD----------GTVKIFEVRNNGQSKLLAELTGHSGPV------------WK-VAWAHPKF 69 (299)
T ss_pred hhhHhhhhhhcceeeeecCC----------ccEEEEEEcCCCCceeeeEecCCCCCe------------eE-Eeeccccc
Confidence 37888888889999999999 99999999754 4688999999988 64 77753 36
Q ss_pred CCEEEEec-CCeEEEEEcCCceec--ccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCc-cceee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLI--DKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSK-EELRQ 404 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 404 (712)
|.+||+++ ||.|.||.-.+++-. .....|...|++++|.|. |-.|++ ++.|+.+.|..++.... ...+.
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-----asSDG~vsvl~~~~~g~w~t~ki 144 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-----ASSDGKVSVLTYDSSGGWTTSKI 144 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEE-----eeCCCcEEEEEEcCCCCccchhh
Confidence 88999999 999999998877432 233457778999999998 456666 77899998888877622 12222
Q ss_pred eeeeeecceeEEECcC---C-----------CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 405 KNLFSVSDCKMYWQSS---G-----------DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~---g-----------~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
...+......+.|.|. | +.|+++..|+. +.+|......-. ....|.+|.+.|+.++
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~---------VkiW~~~~~~w~-~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL---------VKIWKFDSDSWK-LERTLEGHKDWVRDVA 214 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccc---------eeeeecCCcchh-hhhhhhhcchhhhhhh
Confidence 3345556667788886 5 45777777766 788888764222 2234779999999999
Q ss_pred EeeCC----CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 471 WEPKG----HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 471 ~sp~g----~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|.|.- .+||+++.|+ +|.||..+......+.+++..+ ...+..++||+.|..|++++. |+.|.+|.-+
T Consensus 215 waP~~gl~~s~iAS~SqDg---~viIwt~~~e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~G---dNkvtlwke~ 286 (299)
T KOG1332|consen 215 WAPSVGLPKSTIASCSQDG---TVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGG---DNKVTLWKEN 286 (299)
T ss_pred hccccCCCceeeEEecCCC---cEEEEEecCccCcccccccccC-CcceEEEEEeccccEEEEecC---CcEEEEEEeC
Confidence 99964 5899999999 9999998643333333445554 346899999999999999987 9999999654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-17 Score=166.86 Aligned_cols=383 Identities=12% Similarity=0.123 Sum_probs=253.4
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCC-cccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
+.+..+..+.+ |++++..++.+-+||....--.+..+.++. ..+.+++|++.| .|.+.+.+| |.-||+. +.+++.
T Consensus 28 I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~-~lk~~~ 104 (691)
T KOG2048|consen 28 IVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLH-TLKQKY 104 (691)
T ss_pred eEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecc-cCceeE
Confidence 33444444333 678888999999999955444555666654 678999999655 566666677 8899999 888888
Q ss_pred eecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 250 RYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 250 ~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.+...+ |.+++.+|.+..++.|+.+ |.+..+++..++.. +.|...+..+. ++.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~Igcdd----------Gvl~~~s~~p~~I~~~r~l~rq~sRvL-------------sls 161 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDD----------GVLYDFSIGPDKITYKRSLMRQKSRVL-------------SLS 161 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCC----------ceEEEEecCCceEEEEeecccccceEE-------------EEE
Confidence 776443 9999999999999999999 98888887766643 33333333332 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc--------CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE--------NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
|+| ++..|++|+ ||.|++||+.++..+........ -|.++.+-.++. |++ +|..+.|..|+.
T Consensus 162 w~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~s-------gDS~G~V~FWd~ 232 (691)
T KOG2048|consen 162 WNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IAS-------GDSAGTVTFWDS 232 (691)
T ss_pred ecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEE-------ecCCceEEEEcc
Confidence 999 999999998 99999999998876542211111 156666665554 444 788888999998
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc-ceeEEEecCCCCceEEEEEeeCC
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI-PIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
.....+.....+.....+++-++++.++.+++.+.. +-.|....... -+.......|...|.+++..++
T Consensus 233 ~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~---------ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK---------IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred cCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc---------eEEEEecCCccceeeeccccCCcccceeeeeecc-
Confidence 888888888888889999999999998888877765 22333322211 1111223467888999999877
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCce-eEEEEccCCCeEEEEeccCCCceEEEEECCcc------
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQA-NALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL------ 547 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v-~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~------ 547 (712)
.+++++.|. .+.+-........ -+..+ ..+. .-+..+|..+.++.-. ...+.+|.+.+.
T Consensus 303 -~l~sgG~d~---~l~i~~s~~~~~~-----~h~~~~~~p~~~~v~~a~~~~L~~~w~----~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 303 -ALISGGRDF---TLAICSSREFKNM-----DHRQKNLFPASDRVSVAPENRLLVLWK----AHGVDLWRLGSVILQGEY 369 (691)
T ss_pred -eEEecceee---EEEEccccccCch-----hhhccccccccceeecCccceEEEEec----cccccceeccCccccccc
Confidence 677777777 6766554321110 00011 0111 1233344443433332 456667766533
Q ss_pred -----eeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eeeeec-------ccceeeeEEecCCCCC
Q 005140 548 -----ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRTL-------KDHFFQFLWRPRPPSF 614 (712)
Q Consensus 548 -----~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~~-------~~~i~~~~w~p~~~~l 614 (712)
-.+.+.....|++.+.||+|.+|+.++- ..++||.++-. .+.... .-....+.|+-++..+
T Consensus 370 ~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~------~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAAISPDGNLIAISTV------SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKL 443 (691)
T ss_pred ChhhheeeecCCccceeeeccCCCCCEEEEeec------cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceE
Confidence 1122355678999999999999999987 57788887632 222111 1245667777777665
Q ss_pred CChh
Q 005140 615 LTPE 618 (712)
Q Consensus 615 ~s~~ 618 (712)
+..+
T Consensus 444 ~~~s 447 (691)
T KOG2048|consen 444 FLVS 447 (691)
T ss_pred EEEe
Confidence 5544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=173.19 Aligned_cols=155 Identities=15% Similarity=0.373 Sum_probs=119.5
Q ss_pred CCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCc---eeEEEEeCCCceeEEEEccC-CCeEEEEeccCCCc
Q 005140 463 NDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGR---VSKLTTLKGKQANALFWSPS-GRFIVLAGLKGFNG 537 (712)
Q Consensus 463 ~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~---~~~~~~~~~~~v~~l~~spd-g~~l~~~~~~~~dg 537 (712)
...|++++|.| |...||++..|+ .|++|.+..+..... -..+.+.++..|+++.|+|- ...|+++++ |.
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg---~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---d~ 700 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG---QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---DS 700 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc---eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---cc
Confidence 45689999999 889999999999 999999976543211 12334444557999999994 467888888 99
Q ss_pred eEEEEECCcceeee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--eeeeec---ccceeeeEEecC
Q 005140 538 QLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LLYRTL---KDHFFQFLWRPR 610 (712)
Q Consensus 538 ~v~iwd~~~~~~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~~~~~~---~~~i~~~~w~p~ 610 (712)
+|++||+.+++... .+|...|.+++|||||+.+|+.+. |+.+++|+-... .++... ..+-..+.|.-+
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK-----Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK-----DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec-----CceEEEeCCCCCCCccccCCCCccCcceeEEEEec
Confidence 99999999876654 488899999999999999999999 999999996532 233221 145567899999
Q ss_pred CCCCCChhhHHHHHHHHH
Q 005140 611 PPSFLTPEKEEEIAKNLK 628 (712)
Q Consensus 611 ~~~l~s~~~d~~i~~~~~ 628 (712)
|++++..+-|+.-.+.+.
T Consensus 776 gr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred CcEEEEecccccchhhhh
Confidence 999988777665554443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=179.84 Aligned_cols=269 Identities=17% Similarity=0.264 Sum_probs=192.3
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
.|...-+.++|.|+|.+|.+++.+| |++|+.......-..+. +. .|.+++- ++.+|++++.+ ++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~----------~tv 78 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQ----------NTV 78 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeecc----------ceE
Confidence 4556667899999999999999999 88998762212111222 22 2555544 56699999999 999
Q ss_pred EEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCe
Q 005140 288 NIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 288 ~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
.+|...++. .+..|..+.. +++++. +|+++|.++ |-.|++-++.+.........|...|
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r----------------~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIR----------------DLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred EEeeCCCCCccceeeeeeccce----------------EEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 999987775 4555554432 579999 999999999 8899999998887777777888899
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.++.|+|.+++||+ .+.++.++|| ++..+........ . .++..
T Consensus 142 l~l~~~p~~~fLAv-----ss~dG~v~iw--~~~~~~~~~tl~~--v-------~k~n~--------------------- 184 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAV-----SSCDGKVQIW--DLQDGILSKTLTG--V-------DKDNE--------------------- 184 (933)
T ss_pred eeeeEcCCCCEEEE-----EecCceEEEE--Ecccchhhhhccc--C-------Ccccc---------------------
Confidence 99999999999999 5566655554 4433322111110 0 00000
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----CCceeEEE
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANALF 519 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~l~ 519 (712)
... ...+..++|+|+|..|++...++ .|++|+..+.. ....+. ...++++.
T Consensus 185 -------------~~~---s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r~~we------~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 185 -------------FIL---SRICTRLAWHPKGGTLAVPPVDN---TVKVYSRKGWE------LQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred -------------ccc---cceeeeeeecCCCCeEEeeccCC---eEEEEccCCce------eheeecccccccceEEEE
Confidence 001 34566789999988888888888 89999986544 333332 22378999
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEc
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
|||+|+|||+++. +|.|.|||.++... ......|.+++|-|++.-|-.-..
T Consensus 240 wsPnG~YiAAs~~---~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 240 WSPNGKYIAASTL---DGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred EcCCCcEEeeecc---CCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEee
Confidence 9999999999998 99999999997332 233468999999999876544443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=177.22 Aligned_cols=305 Identities=13% Similarity=0.213 Sum_probs=203.3
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.+|+..|.|.+|++|+.| |+|+||.+.||.+++++....... +++|+| .+
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdD----------GtvriWEi~TgRcvr~~~~d~~I~--------------~vaw~P-~~ 453 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDD----------GTVRIWEIATGRCVRTVQFDSEIR--------------SVAWNP-LS 453 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCC----------CcEEEEEeecceEEEEEeecceeE--------------EEEecC-CC
Confidence 34449999999999999999999 999999999999999988765443 799999 77
Q ss_pred C--EEEEecCCeEEEEEcCCceecccc----cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 332 K--YFAKLGKNMISVYETESFTLIDKK----SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 332 ~--~la~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
. .||.+....+.|-+..-|..+... .+..... .-.|+. .++.|.... .+.. ...+...
T Consensus 454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~---~~~p~~-~~~~W~~~~--~~e~----------~~~v~~~ 517 (733)
T KOG0650|consen 454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPN---ESEPDA-AVVTWSRAS--LDEL----------EKGVCIV 517 (733)
T ss_pred CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCC---ccCCcc-cceeechhh--hhhh----------ccceEEE
Confidence 6 444444555666654433211100 0000000 000111 122221110 0000 0001111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
--+.....++.|+..|.||++...++. ...+.|+.+.....+ ..+.-..+.|.++.|+|...+|++++..
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~------~~~VliHQLSK~~sQ---~PF~kskG~vq~v~FHPs~p~lfVaTq~- 587 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSG------NKSVLIHQLSKRKSQ---SPFRKSKGLVQRVKFHPSKPYLFVATQR- 587 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCC------cceEEEEeccccccc---CchhhcCCceeEEEecCCCceEEEEecc-
Confidence 112334456789999999999777644 223677777754333 2232347889999999999999988874
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc-eeee--eccccceee
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL-ETMA--TAEHFMATD 560 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~-~~~~--~~~~~~v~~ 560 (712)
.|+|||+..+. +++.+. ...+..++.+|.|..|++++. ++.+..||++-. +... ..|...+++
T Consensus 588 ---~vRiYdL~kqe------lvKkL~tg~kwiS~msihp~GDnli~gs~---d~k~~WfDldlsskPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 588 ---SVRIYDLSKQE------LVKKLLTGSKWISSMSIHPNGDNLILGSY---DKKMCWFDLDLSSKPYKTLRLHEKAVRS 655 (733)
T ss_pred ---ceEEEehhHHH------HHHHHhcCCeeeeeeeecCCCCeEEEecC---CCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence 59999996533 333333 236899999999999999999 999999999843 2333 256688999
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEe--cCce-----ee---ee--cc----cceeeeEEecCCCCCCChhhHHHHH
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSF--NGKL-----LY---RT--LK----DHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~--~g~~-----~~---~~--~~----~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
++|++.=..+++|+. |+.+.|+.- -..+ +. .. |. -.|.++.|+|...+|+|++.|++||
T Consensus 656 Va~H~ryPLfas~sd-----Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSD-----DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhccccceeeeecC-----CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 999999889999999 999998742 1222 21 11 22 3588889999999999999999886
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-18 Score=161.85 Aligned_cols=311 Identities=16% Similarity=0.234 Sum_probs=195.2
Q ss_pred cccceEEEcCCCc-EEEEEecCc-eEEeeccc----Cc--c--ee--eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 214 WTESFVQWSPLGT-YLATVHRQG-AAVWGGAN----TF--N--RL--MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 214 ~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~----~~--~--~~--~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
.++..+.|.+++. .|||++.|. |+||.... ++ . -+ ...|+..|+++.|+|+|..||+|+.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~------- 86 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG------- 86 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-------
Confidence 5678888988776 999999998 99996541 11 1 11 12244569999999999999999999
Q ss_pred CCccEEEEEEcc--------C--------CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEE
Q 005140 282 ANRVVINIFDVR--------T--------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 344 (712)
Q Consensus 282 ~~~~~I~iwd~~--------~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~i 344 (712)
+.|.+|... + ....+.+.+|...+. .++|+| ++.++++++ |+.+.+
T Consensus 87 ---g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy-------------dL~Ws~-d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 87 ---GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY-------------DLAWSP-DSNFLVSGSVDNSVRL 149 (434)
T ss_pred ---ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchh-------------hhhccC-CCceeeeeeccceEEE
Confidence 999999864 2 112345556665552 589999 999999999 999999
Q ss_pred EEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc----------------ceeeeeee
Q 005140 345 YETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE----------------ELRQKNLF 408 (712)
Q Consensus 345 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~ 408 (712)
||+..|.++.....|...|+.++|.|-++++++ -+.+...++........- .-....++
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s-----~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf 224 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS-----KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF 224 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhh-----hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence 999999998888778888999999999999987 445553333322221110 00111112
Q ss_pred eec-----ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 409 SVS-----DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 409 ~~~-----~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
... -.++.|+|+|..|++.................+|.-.....|+ ..+++-..++..+.++|
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~--~~lp~~~k~~lavr~~p---------- 292 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA--ARLPSPKKPALAVRFSP---------- 292 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce--eecCCCCcceEEEEeee----------
Confidence 111 1245789999988875543221111001111222221111111 11111111222222221
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee---eccccceee
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---TAEHFMATD 560 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---~~~~~~v~~ 560 (712)
..|.++.-. .. .. +.--|-+-.+++++ ...|+|||.++...+. ..|...+++
T Consensus 293 -------Vy~elrp~~---------~~---~~--~~~lpyrlvfaiAt----~~svyvydtq~~~P~~~v~nihy~~iTD 347 (434)
T KOG1009|consen 293 -------VYYELRPLS---------SE---KF--LFVLPYRLVFAIAT----KNSVYVYDTQTLEPLAVVDNIHYSAITD 347 (434)
T ss_pred -------eEEEecccc---------cc---cc--ccccccceEEEEee----cceEEEeccccccceEEEeeeeeeeecc
Confidence 123332110 00 00 22234445566666 5789999999766554 478899999
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
++||+||.+|+.++. ||-..+-.+.+..+.
T Consensus 348 iaws~dg~~l~vSS~-----DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 348 IAWSDDGSVLLVSST-----DGFCSLVTFEPWELG 377 (434)
T ss_pred eeecCCCcEEEEecc-----CCceEEEEEcchhcc
Confidence 999999999999999 999988888766554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=153.48 Aligned_cols=295 Identities=16% Similarity=0.184 Sum_probs=207.2
Q ss_pred cCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcc---------eee--eecCC-----CeeEEEecC-CCCEEEE
Q 005140 210 KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFN---------RLM--RYAHP-----QVKLIDFSP-GEKYLVT 270 (712)
Q Consensus 210 ~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~---------~~~--~~~~~-----~v~~i~~Sp-dg~~l~t 270 (712)
..|.+.|++++.-| .|+|+++|+.|| +.|||+++... .++ ..+|+ .|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46778999999987 699999999999 77999873221 111 22233 388999999 4456777
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC---CEEEEec-CCeEEEEE
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD---KYFAKLG-KNMISVYE 346 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg---~~la~~~-d~~i~iwd 346 (712)
++.| .+++|||..|-+..-.|+...... .-+||| -. -++|++. +-.|++-|
T Consensus 120 sSFD----------htlKVWDtnTlQ~a~~F~me~~VY--------------shamSp-~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 120 SSFD----------HTLKVWDTNTLQEAVDFKMEGKVY--------------SHAMSP-MAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred cccc----------ceEEEeecccceeeEEeecCceee--------------hhhcCh-hhhcceEEEEecCCCcEEEEe
Confidence 8888 899999999988888887665443 345665 32 3666666 88999999
Q ss_pred cCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 347 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
+.+|..-..++.|.++|..+.|||...++++. |+.|+.+++|.+.-.+ |.+.
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLat----gsaDg~irlWDiRras----------------------gcf~-- 226 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLAT----GSADGAIRLWDIRRAS----------------------GCFR-- 226 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEe----cCCCceEEEEEeeccc----------------------ceeE--
Confidence 99999988889999999999999998877653 7788887777654321 1111
Q ss_pred EEcccccccccccccEEEEEEec-CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKE-RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+.+... +..|+.. .-++|.+.+..++|+.+|.++++++.|. .+++|+..++... ..
T Consensus 227 -----------------~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~---r~r~wn~~~G~nt--l~ 283 (397)
T KOG4283|consen 227 -----------------VLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDD---RIRVWNMESGRNT--LR 283 (397)
T ss_pred -----------------EeecccCccCcccc-ccccccceeeeeeecccchhhhhccCcc---ceEEeecccCccc--cc
Confidence 111111 1112111 2457899999999999999999999988 8999999876542 11
Q ss_pred EEEEeC----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEcccee
Q 005140 506 KLTTLK----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 506 ~~~~~~----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
....+. .+....+. +-+...++.--. ++.+.++++-.+..+.. .|...+.+..+.|+=+...++..
T Consensus 284 ~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~---~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~---- 355 (397)
T KOG4283|consen 284 EFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPN---DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM---- 355 (397)
T ss_pred ccccccccccccceEEEe-ecccceEEEEec---CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc----
Confidence 111111 11111122 333333333333 78899998887777654 66788899999999888888888
Q ss_pred ccccEEEEEe
Q 005140 580 MENGFNIWSF 589 (712)
Q Consensus 580 ~d~~v~iw~~ 589 (712)
|+.+..|..
T Consensus 356 -d~ni~~w~p 364 (397)
T KOG4283|consen 356 -NGNIYMWSP 364 (397)
T ss_pred -CCccccccc
Confidence 899988875
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=159.08 Aligned_cols=269 Identities=14% Similarity=0.254 Sum_probs=195.9
Q ss_pred CCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEee------ccc----------
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG------GAN---------- 243 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~------~~~---------- 243 (712)
++..+...+.|.+..+|.+ ..+.+...|++|.++|+|+.|+|.|.+++++++|+ ..||. ...
T Consensus 159 tqpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred CCcceeecccccceeEEee-ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 4444455667889999999 78999999999999999999999999999999999 45885 110
Q ss_pred -------------------Cc----ceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 244 -------------------TF----NRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 244 -------------------~~----~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
.+ .++.++ .|.. |.+..|-..|+.+++++.| .+..+||+++|..+
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD----------RTAnlwDVEtge~v 307 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD----------RTANLWDVETGEVV 307 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc----------ccceeeeeccCcee
Confidence 00 012222 2444 7888999999999999999 89999999999999
Q ss_pred eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-ceecccccccccCeeeEEECCCCCeEE
Q 005140 299 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
..+.+|....+ .++-.| ..+++++.+ |.+.++||... -..+..+..|.+.|++..|.-+.+.+.
T Consensus 308 ~~LtGHd~ELt-------------HcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVS 373 (481)
T KOG0300|consen 308 NILTGHDSELT-------------HCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVS 373 (481)
T ss_pred ccccCcchhcc-------------ccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceee
Confidence 99999988763 456677 888888888 99999999872 223334456777788877776655443
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
++.|.+++ +|++++...|+..
T Consensus 374 ------gSDDrTvK-----------------------------------------------------vWdLrNMRsplAT 394 (481)
T KOG0300|consen 374 ------GSDDRTVK-----------------------------------------------------VWDLRNMRSPLAT 394 (481)
T ss_pred ------cCCCceEE-----------------------------------------------------EeeeccccCccee
Confidence 45555544 4444444455555
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE--EeCCC--ceeEEEEccCC--CeEEEE
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT--TLKGK--QANALFWSPSG--RFIVLA 530 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~--~~~~~--~v~~l~~spdg--~~l~~~ 530 (712)
+.. ..+++.++.+..+..|+.-..+. .|++||+..... ..+. .-.+| .+.|.+|+.+- .-|+++
T Consensus 395 IRt---dS~~NRvavs~g~~iIAiPhDNR---qvRlfDlnG~Rl----aRlPrtsRqgHrRMV~c~AW~eehp~cnLftc 464 (481)
T KOG0300|consen 395 IRT---DSPANRVAVSKGHPIIAIPHDNR---QVRLFDLNGNRL----ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTC 464 (481)
T ss_pred eec---CCccceeEeecCCceEEeccCCc---eEEEEecCCCcc----ccCCcccccccceeeeeeeccccCcccccccc
Confidence 555 77888888887777777776666 999999964321 1111 11233 58999997543 457778
Q ss_pred eccCCCceEEEEECCc
Q 005140 531 GLKGFNGQLEFYNVDE 546 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~ 546 (712)
+. |..+.=|++..
T Consensus 465 GF---DR~v~gW~in~ 477 (481)
T KOG0300|consen 465 GF---DRMVAGWKINT 477 (481)
T ss_pred cc---cceeeeeEecc
Confidence 87 99999998763
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=165.01 Aligned_cols=275 Identities=14% Similarity=0.200 Sum_probs=201.6
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC-------CCcccccCCCCCcCCCCcCeE
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG-------SADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 324 (712)
|+-.+.+++++|+++++++++.+ ++|.-|++.+|+..+.+-. |..........++.-+ . ++
T Consensus 141 H~~s~~~vals~d~~~~fsask~----------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~kei-l-~~ 208 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKD----------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEI-L-TL 208 (479)
T ss_pred ccCcceEEEeeccccceeecCCC----------cceeeeehhcCcccccccccchhhhhccCCCCccccccccee-E-EE
Confidence 44569999999999999999999 9999999999885532211 1111100000111111 1 68
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
+.|+ ||+|||+++ |..|.||+..+++.+.....|.+.|.+++|-.....|.+ ++.|..+++|..+-.
T Consensus 209 avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys-----~s~Drsvkvw~~~~~------ 276 (479)
T KOG0299|consen 209 AVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS-----ASADRSVKVWSIDQL------ 276 (479)
T ss_pred EEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceee-----eecCCceEEEehhHh------
Confidence 9999 999999999 999999999999988877788888999998877666666 667777666544311
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.. .-++.+|.+.|.++.-..-++.+.+++.
T Consensus 277 -----------------------------------------------s~---vetlyGHqd~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 277 -----------------------------------------------SY---VETLYGHQDGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred -----------------------------------------------HH---HHHHhCCccceeeechhcccceEEeccc
Confidence 00 0234578888888877777777777778
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccc-----
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEH----- 555 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~----- 555 (712)
|. ++++|.+.... +++..-....+.|++|-.+. .+++|+. +|.|.+|++...+.+.+ .|+
T Consensus 307 Dr---T~rlwKi~ees-----qlifrg~~~sidcv~~In~~-HfvsGSd---nG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 307 DR---TVRLWKIPEES-----QLIFRGGEGSIDCVAFINDE-HFVSGSD---NGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred cc---eeEEEeccccc-----eeeeeCCCCCeeeEEEeccc-ceeeccC---CceEEEeeecccCceeEeeccccccCCc
Confidence 88 99999994332 24555445578888887654 6678887 99999999987776654 121
Q ss_pred ------cceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-----eeeee-cccceeeeEEecCCCCCCCh
Q 005140 556 ------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-----LLYRT-LKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 556 ------~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-----~~~~~-~~~~i~~~~w~p~~~~l~s~ 617 (712)
..|++++..|....+|+|+. +|.+++|.+... +++.. ..+-|+.++|+++|..++.+
T Consensus 375 ~~~~~~~Witsla~i~~sdL~asGS~-----~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLASGSW-----SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccccceeeeEecccCceEEecCC-----CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 26889999999999999999 999999998743 33333 33789999999999977655
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=153.18 Aligned_cols=276 Identities=16% Similarity=0.141 Sum_probs=189.5
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCc-ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPE-PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR 247 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~ 247 (712)
+.+....++|.....++.++-|+++.+|.....+..+ .....|..+|.+++||.||+.+++|+.|+ +++||+. +++.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-SGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-CCCe
Confidence 5566677778666566788889999999985533322 34567889999999999999999999999 8899999 6665
Q ss_pred eeeecCCC-eeEEEecCCCC--EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 248 LMRYAHPQ-VKLIDFSPGEK--YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 248 ~~~~~~~~-v~~i~~Spdg~--~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
.....|.+ |..+.|-+... .|+||+.| .+|+.||.+...++.++..+.... ++
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD----------KTlKfWD~R~~~pv~t~~LPeRvY--------------a~ 162 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWD----------KTLKFWDTRSSNPVATLQLPERVY--------------AA 162 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccc----------cceeecccCCCCeeeeeeccceee--------------eh
Confidence 55445554 99999988765 89999999 999999999999988887776543 12
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.. --..++.+. ++.|.+|++..+....+... -.-.+.+++..++....++ |+-.+.+.|..++.+..+
T Consensus 163 Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al-----GsiEGrv~iq~id~~~~~- 233 (347)
T KOG0647|consen 163 DV---LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL-----GSIEGRVAIQYIDDPNPK- 233 (347)
T ss_pred hc---cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe-----eeecceEEEEecCCCCcc-
Confidence 11 122444444 99999999976543322211 1113788888888776677 555554444433322110
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
..+.+...+.. .. ..+.-..|++++|+|.-..|+++
T Consensus 234 --------------------~nFtFkCHR~~----------------~~--------~~~~VYaVNsi~FhP~hgtlvTa 269 (347)
T KOG0647|consen 234 --------------------DNFTFKCHRST----------------NS--------VNDDVYAVNSIAFHPVHGTLVTA 269 (347)
T ss_pred --------------------CceeEEEeccC----------------CC--------CCCceEEecceEeecccceEEEe
Confidence 00111001100 00 00002467889999999999999
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
++|| ++.+||-+... .+++.+ ..+|++.+|+.+|.+++.+..
T Consensus 270 GsDG---tf~FWDkdar~------kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 270 GSDG---TFSFWDKDART------KLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cCCc---eEEEecchhhh------hhhccCcCCCccceeEecCCCCEEEEEee
Confidence 9999 99999976543 334433 458999999999999988753
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-18 Score=155.56 Aligned_cols=231 Identities=19% Similarity=0.318 Sum_probs=174.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-- 332 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-- 332 (712)
.+++++. +|.|+|+|+.| -+|+|||+.+...+..+..|.+.++ ++.|.+ +-.
T Consensus 45 sitavAV--s~~~~aSGssD----------etI~IYDm~k~~qlg~ll~Hagsit-------------aL~F~~-~~S~s 98 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSD----------ETIHIYDMRKRKQLGILLSHAGSIT-------------ALKFYP-PLSKS 98 (362)
T ss_pred ceeEEEe--cceeEeccCCC----------CcEEEEeccchhhhcceeccccceE-------------EEEecC-Ccchh
Confidence 3889988 58999999999 8999999999999999988887764 789988 664
Q ss_pred EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 333 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
.|.+++ ||.|.+|+.....++.....|...|+.++.+|.+++-++ .++|+..+.|. +-.++
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALs-----Vg~D~~lr~WN--LV~Gr----------- 160 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALS-----VGGDQVLRTWN--LVRGR----------- 160 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEE-----EcCCceeeeeh--hhcCc-----------
Confidence 666666 999999999999988888888888999999999987776 55666665443 21111
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
. .....+ ....+.+.|+|.|.+|+++..++ |-
T Consensus 161 -----------~------------------------------a~v~~L---~~~at~v~w~~~Gd~F~v~~~~~----i~ 192 (362)
T KOG0294|consen 161 -----------V------------------------------AFVLNL---KNKATLVSWSPQGDHFVVSGRNK----ID 192 (362)
T ss_pred -----------c------------------------------ceeecc---CCcceeeEEcCCCCEEEEEeccE----EE
Confidence 0 000112 22334489999999999988764 88
Q ss_pred EEEeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee--eccccceeeEE--ECCC
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVE--WDPT 566 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~--~~~~~~v~~~~--~spd 566 (712)
+|.+.+.. .+..+.. ..+.++.|- ++..|++|+. ++.|.+||.+....+. ..|...|-++. -.|+
T Consensus 193 i~q~d~A~------v~~~i~~~~r~l~~~~l-~~~~L~vG~d---~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 193 IYQLDNAS------VFREIENPKRILCATFL-DGSELLVGGD---NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPE 262 (362)
T ss_pred EEecccHh------Hhhhhhccccceeeeec-CCceEEEecC---CceEEEeccCCCccceeeecchhheeeeEEEecCC
Confidence 99886543 2223322 234455554 5668888887 9999999999766554 37778888876 3678
Q ss_pred CCEEEEEEccceeccccEEEEEecCc
Q 005140 567 GRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 567 g~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+.||+++++ ||.|+||++.-.
T Consensus 263 ~~~lvTaSS-----DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASS-----DGFIKVWDIDME 283 (362)
T ss_pred ceEEEEecc-----CceEEEEEcccc
Confidence 899999999 999999998743
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=159.80 Aligned_cols=287 Identities=13% Similarity=0.185 Sum_probs=193.8
Q ss_pred eeEEEecCCCCCCCcccccCCC-cc-cceEEEcCCCcEEEEEecCc--eEEeecccCcceee-eecCCC-eeEEEecCCC
Q 005140 192 DTEVLWNDARHLKPEPVYKRSY-WT-ESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLM-RYAHPQ-VKLIDFSPGE 265 (712)
Q Consensus 192 ~~~~~w~~~~~~~~~~~~~~~~-~~-v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~-~~~~~~-v~~i~~Spdg 265 (712)
...++|+. ..+.....|++.. .. -.+-+. .+.|++++.... +.+|.+. ...+.. .+-.++ |.+++-+|+|
T Consensus 18 ~~~~~~dl-~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~-k~~~~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 18 INCIVWDL-RTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEIL-KKDQVVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred cceeEEec-CCCceeEEecCcccccchhhhhh--chhheeeecccCccccccccC-chhhhhhhcccccceeeeecCCCc
Confidence 34668887 4555444554431 10 011112 236777776554 7799987 444443 333455 9999999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEE
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 344 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~i 344 (712)
.||+.|... +.|++|.+.+|.++..+..|-..++ ++.|+. ||.+|++++ ||.|.+
T Consensus 94 ~~l~ag~i~----------g~lYlWelssG~LL~v~~aHYQ~IT-------------cL~fs~-dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 94 YFLLAGTIS----------GNLYLWELSSGILLNVLSAHYQSIT-------------CLKFSD-DGSHIITGSKDGAVLV 149 (476)
T ss_pred eEEEeeccc----------CcEEEEEeccccHHHHHHhhcccee-------------EEEEeC-CCcEEEecCCCccEEE
Confidence 999998777 8999999999999999999988875 899999 999999999 999999
Q ss_pred EEcCCce---------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeE
Q 005140 345 YETESFT---------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 415 (712)
Q Consensus 345 wd~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 415 (712)
|.+.+.- .+.....|.-.|+++...+
T Consensus 150 W~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~--------------------------------------------- 184 (476)
T KOG0646|consen 150 WLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS--------------------------------------------- 184 (476)
T ss_pred EEEEeecccccCCCccceeeeccCcceeEEEEecC---------------------------------------------
Confidence 9875211 1111111222233332222
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
.+...+|++.+.|.+ +++|++... .-...+.+ ...+.+++.+|-...+++|+.+| .|.+.++
T Consensus 185 --Gg~~~rl~TaS~D~t---------~k~wdlS~g-~LLlti~f---p~si~av~lDpae~~~yiGt~~G---~I~~~~~ 246 (476)
T KOG0646|consen 185 --GGTNARLYTASEDRT---------IKLWDLSLG-VLLLTITF---PSSIKAVALDPAERVVYIGTEEG---KIFQNLL 246 (476)
T ss_pred --CCccceEEEecCCce---------EEEEEeccc-eeeEEEec---CCcceeEEEcccccEEEecCCcc---eEEeeeh
Confidence 222335556666655 566666543 22223444 77899999999999999999999 7777776
Q ss_pred ecccccC----------ceeEEEEeCCC----ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc--cccee
Q 005140 496 RTAQHAG----------RVSKLTTLKGK----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE--HFMAT 559 (712)
Q Consensus 496 ~~~~~~~----------~~~~~~~~~~~----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~--~~~v~ 559 (712)
....+.. ....+..+.+| +|+|+++|-||..|++|+. ||.|+|||+.+.+++++.. .++|+
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~---dg~VcvWdi~S~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE---DGKVCVWDIYSKQCIRTLQTSKGPVT 323 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC---CCCEEEEecchHHHHHHHhhhccccc
Confidence 4322110 01123333333 6999999999999999998 9999999999999888743 58899
Q ss_pred eEEECCCCCEEEE
Q 005140 560 DVEWDPTGRYVAT 572 (712)
Q Consensus 560 ~~~~spdg~~l~t 572 (712)
.+.+.|=-+-++.
T Consensus 324 nL~i~~~~~~~~l 336 (476)
T KOG0646|consen 324 NLQINPLERGIIL 336 (476)
T ss_pred eeEeeccccceec
Confidence 9999665443333
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-18 Score=150.71 Aligned_cols=248 Identities=17% Similarity=0.153 Sum_probs=183.0
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee-cCCC-eeEEEecC--CCCEEEEEcCCCCCCCcC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHPQ-VKLIDFSP--GEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~~-v~~i~~Sp--dg~~l~t~s~d~~~~~~~ 281 (712)
-+.|...|..++..--|+.|||++.|+ |+|+...++.+ .+..+ .|.+ |..++|.. -|.+||+++.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD------- 79 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD------- 79 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC-------
Confidence 367888888888888899999999999 88999875543 44444 3555 99999976 79999999999
Q ss_pred CCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec-CCeEEEEEcCCc-eeccc-
Q 005140 282 ANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESF-TLIDK- 355 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~-d~~i~iwd~~~~-~~~~~- 355 (712)
+.|.||.-.+|+ ....+..|...+. +++|.|+ -|-.|++++ ||.|.|.+..+. .-...
T Consensus 80 ---gkVIiWke~~g~w~k~~e~~~h~~SVN-------------sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 80 ---GKVIIWKEENGRWTKAYEHAAHSASVN-------------SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred ---ceEEEEecCCCchhhhhhhhhhcccce-------------eecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 999999977774 2445556665543 6788773 345777777 999999987743 22211
Q ss_pred -ccccccCeeeEEECCC---C-----------CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 356 -KSLKVENVMDFSWSPT---D-----------PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 356 -~~~~~~~v~~~~~sp~---~-----------~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
...|.-+|++++|.|. | +.|++ |+.|..++||.++..+-..-+....+..-...++|.|.
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS-----gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS-----GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeec-----cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 2347778999999997 4 45777 88999999999987654333333334444556688886
Q ss_pred C----CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 421 G----DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 421 g----~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
- .+|++++.+++ +.||..+....+-...-+......+..+.||+.|+.|+++++|. .|.+|.-.
T Consensus 219 ~gl~~s~iAS~SqDg~---------viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN---kvtlwke~ 286 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGT---------VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN---KVTLWKEN 286 (299)
T ss_pred cCCCceeeEEecCCCc---------EEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc---EEEEEEeC
Confidence 5 47888888877 78888775433332222333477899999999999999999998 99999753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-18 Score=170.80 Aligned_cols=273 Identities=18% Similarity=0.289 Sum_probs=198.7
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|..++|-|||..|+.+..+ .+.+||...|..+.++++|++.+. +++||. ||+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-----------rlliyD~ndG~llqtLKgHKDtVy-------------cVAys~-dGkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-----------RLLVYDTSDGTLLQPLKGHKDTVY-------------CVAYAK-DGKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecCC-----------EEEEEeCCCcccccccccccceEE-------------EEEEcc-CCcee
Confidence 58999999999999888777 689999999999999999999874 799999 99999
Q ss_pred EEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 335 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
|+++ |+.|.+|+..--..+ +-.|.+.|.|++|+|-..+|++ ++-.. .-+|....+.....+. ....+
T Consensus 69 ASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~Las-----CsLsd---FglWS~~qK~V~K~ks--s~R~~ 136 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLAS-----CSLSD---FGLWSPEQKSVSKHKS--SSRII 136 (1081)
T ss_pred ccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhh-----cchhh---ccccChhhhhHHhhhh--heeEE
Confidence 9999 999999986532222 1246778999999999999987 32221 2234433333332222 33455
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceEEEEEeeCC-----CEEEEEEcCCCC
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKG-----HRFAVIHGDSPR 487 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g-----~~l~~~~~d~~~ 487 (712)
..+|+.||++++.+..+++ +.+-. ..+.+.-.+.- .+.+.+|.+++|+|.. ..+++.....
T Consensus 137 ~CsWtnDGqylalG~~nGT---------IsiRN--k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q-- 203 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGT---------ISIRN--KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ-- 203 (1081)
T ss_pred EeeecCCCcEEEEeccCce---------EEeec--CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc--
Confidence 6789999999999999887 22221 11222222222 2457899999999963 4667776666
Q ss_pred CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-c-cccceeeEEECC
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-A-EHFMATDVEWDP 565 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~-~~~~v~~~~~sp 565 (712)
++.+|.+..... ..-+.+ +-...|+++-|+|.|+++|+. ++.+.+|.-+ |-.+.+ + ....|..++..|
T Consensus 204 -TLSFy~LsG~~I----gk~r~L-~FdP~CisYf~NGEy~LiGGs---dk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 204 -TLSFYQLSGKQI----GKDRAL-NFDPCCISYFTNGEYILLGGS---DKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred -eeEEEEecceee----cccccC-CCCchhheeccCCcEEEEccC---CCceEEEeec-CeEEeeccccceeEEEEEEcc
Confidence 889998854221 011122 223478999999999999998 9999999776 334433 2 346789999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCc
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+|++++.|.. ||++.-|++...
T Consensus 274 NsQ~v~~GCq-----DGTiACyNl~fS 295 (1081)
T KOG1538|consen 274 NSQYVVVGCQ-----DGTIACYNLIFS 295 (1081)
T ss_pred CCceEEEEEc-----cCeeehhhhHHh
Confidence 9999999999 999999987543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=166.09 Aligned_cols=323 Identities=14% Similarity=0.203 Sum_probs=213.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCccc---ccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc--C---cceeeeecCC
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPV---YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN--T---FNRLMRYAHP 254 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~--~---~~~~~~~~~~ 254 (712)
+|.....+....+|+.+...+.... -..|...++|.++||+++++|++..+| |.+|.--+ . ...+...||.
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 3444444555667887543322111 145777789999999999999999999 99996442 1 1134445788
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.|.+++||++|.||++|+.. +.+.+|.+.+++ +.|-.. ...+. .+.||| |+.+
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E----------~VLv~Wq~~T~~--kqfLPRLgs~I~-------------~i~vS~-ds~~ 306 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGRE----------GVLVLWQLETGK--KQFLPRLGSPIL-------------HIVVSP-DSDL 306 (792)
T ss_pred ccceeEEecCCceEeecccc----------eEEEEEeecCCC--cccccccCCeeE-------------EEEEcC-CCCe
Confidence 89999999999999999999 999999999988 344332 22221 689999 9998
Q ss_pred EEEec-CCeEEEEEcCCceecccccc-----------cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSL-----------KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.+... |+.|.+....++......+. ...-.+.++++|.-+.+++ ...++.|..|++-+.+.
T Consensus 307 ~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-------n~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 307 YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-------NGHPGHVQFYDLYTDST 379 (792)
T ss_pred EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee-------cCCCceEEEEeccccce
Confidence 77766 99999998876543322111 1112567889997777777 55666777777766543
Q ss_pred eeeee-----------eeeecceeEEECcCCCEEEEEEccccccccc-ccccEEEEEEecCCcce--eEEEecCCCCceE
Q 005140 402 LRQKN-----------LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS-TYTGFELFRIKERDIPI--EVLELDNKNDKII 467 (712)
Q Consensus 402 ~~~~~-----------~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~--~~~~l~~h~~~v~ 467 (712)
+.... .........+.+..|.++++.-....+.... ....+++|......... .+.-..+|...+.
T Consensus 380 i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 380 IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 32211 1122334445566688888765443211111 12246677665543221 1122236776666
Q ss_pred EEEEee-C-CCEEEEEEcCCCCCeEEEEEeec------ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 468 AFAWEP-K-GHRFAVIHGDSPRPDISFYSMRT------AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 468 ~~~~sp-~-g~~l~~~~~d~~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
..++.+ . ...+++++.++ .++||-+.. ......|..+..++..++++++||.||..|+++. ++.|
T Consensus 460 at~~~~~~rs~~~vta~~dg---~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~----~~~I 532 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDG---DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF----DDTI 532 (792)
T ss_pred EEEEecCcccceeEEeccCC---eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec----CCEE
Confidence 665554 2 33788888888 899999833 3333456677777777899999999997777765 8999
Q ss_pred EEEECCc
Q 005140 540 EFYNVDE 546 (712)
Q Consensus 540 ~iwd~~~ 546 (712)
.+||..+
T Consensus 533 tiwd~~~ 539 (792)
T KOG1963|consen 533 TIWDYDT 539 (792)
T ss_pred EEecCCC
Confidence 9999987
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=164.93 Aligned_cols=252 Identities=15% Similarity=0.305 Sum_probs=167.8
Q ss_pred eeeeecCCC-eeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCce----------eeeccCCCcccccCCCC
Q 005140 247 RLMRYAHPQ-VKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKV----------MRDFKGSADEFAVGGTG 314 (712)
Q Consensus 247 ~~~~~~~~~-v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~----------~~~~~~~~~~~~~~~~~ 314 (712)
...++.|++ |..+..-|....| |+.+.. +.|.|||..+-.. -.++.+|...-
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~----------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg------ 180 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSS----------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG------ 180 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCC----------CCEEEEEeccCCCcccccccCCCceEEEeecccc------
Confidence 344555665 9999999977555 455555 7899999743321 12455665521
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-------ccccccccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-------DKKSLKVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
. .++|++...-++++++ |++|++||+...... .....|...|.+++|+|-...+... ++.+
T Consensus 181 --~-----glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s----v~dd 249 (422)
T KOG0264|consen 181 --Y-----GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS----VGDD 249 (422)
T ss_pred --c-----ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee----ecCC
Confidence 2 3677773334666666 999999999854331 1123345557777777764443321 2233
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
+. +.||+++.. .........+|.+.|
T Consensus 250 ~~-----------------------------------------------------L~iwD~R~~-~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 250 GK-----------------------------------------------------LMIWDTRSN-TSKPSHSVKAHSAEV 275 (422)
T ss_pred Ce-----------------------------------------------------EEEEEcCCC-CCCCcccccccCCce
Confidence 32 344444431 111123345889999
Q ss_pred EEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCC-eEEEEeccCCCceEEEE
Q 005140 467 IAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGR-FIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 467 ~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~-~l~~~~~~~~dg~v~iw 542 (712)
+|++|+| ++..||+++.|+ +|.+||+++... ++.++.+| .|.++.|||+.. .|++++. |+.+.+|
T Consensus 276 n~~~fnp~~~~ilAT~S~D~---tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~---D~rl~vW 344 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADK---TVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGT---DRRLNVW 344 (422)
T ss_pred eEEEeCCCCCceEEeccCCC---cEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEeccc---CCcEEEE
Confidence 9999999 566778888899 999999987654 67777766 689999999765 5556665 9999999
Q ss_pred ECCcc--------------ee--eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 543 NVDEL--------------ET--MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 543 d~~~~--------------~~--~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
|+... ++ +..+|...|+++.|+|+-.+++++... ||.+.||.....+.
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae----DN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE----DNILQIWQMAENIY 408 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC----CceEEEeecccccc
Confidence 99731 11 223777899999999998876655543 99999999875443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=152.56 Aligned_cols=265 Identities=16% Similarity=0.260 Sum_probs=182.2
Q ss_pred EEEcCCCcEEEEEecCc-eEEeecccC-------------cceeeeecCCC-eeEEEec-------CCCCEEEEEcCCCC
Q 005140 219 VQWSPLGTYLATVHRQG-AAVWGGANT-------------FNRLMRYAHPQ-VKLIDFS-------PGEKYLVTYSSHEP 276 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~-i~iw~~~~~-------------~~~~~~~~~~~-v~~i~~S-------pdg~~l~t~s~d~~ 276 (712)
+.|||||+.|.+-+.+. +.+|++... .....++..+. |...+|- |+..++|+.+.+
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~-- 132 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD-- 132 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc--
Confidence 78999999999988877 779987511 01122222333 6777774 777889998888
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC-Cceec
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLI 353 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~-~~~~~ 353 (712)
.-|.+||.-+|+...++.+-. ..+ .+. . +++||| ||.+|..+-+..|+++|+. .|...
T Consensus 133 --------~PIh~wdaftG~lraSy~~ydh~de~--------taA-h-sL~Fs~-DGeqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 133 --------QPIHLWDAFTGKLRASYRAYDHQDEY--------TAA-H-SLQFSP-DGEQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred --------CceeeeeccccccccchhhhhhHHhh--------hhh-e-eEEecC-CCCeEeecccceEEEeeccCCCCCC
Confidence 679999999999877776532 222 111 1 699999 9999999999999999984 44322
Q ss_pred ccc-------cccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEE
Q 005140 354 DKK-------SLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 354 ~~~-------~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 425 (712)
... ....+-+.+++|+|... .+++ ++-.+..-|+.++ +
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~-----gsY~q~~giy~~~-------------------------~---- 239 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV-----GSYGQRVGIYNDD-------------------------G---- 239 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceee-----ecccceeeeEecC-------------------------C----
Confidence 111 11233478889999765 5555 4433333322111 0
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
..|. ..+.+|.+.|+.+.|.++|+.|.+++.... .|..||++....
T Consensus 240 -------------------------~~pl--~llggh~gGvThL~~~edGn~lfsGaRk~d--kIl~WDiR~~~~----- 285 (406)
T KOG2919|consen 240 -------------------------RRPL--QLLGGHGGGVTHLQWCEDGNKLFSGARKDD--KILCWDIRYSRD----- 285 (406)
T ss_pred -------------------------CCce--eeecccCCCeeeEEeccCcCeecccccCCC--eEEEEeehhccc-----
Confidence 0111 224488999999999999999999987432 799999975432
Q ss_pred EEEEeCCC-----ceeEEEEccCCCeEEEEeccCCCceEEEEECCc-ceeee--eccccceeeEEECCCCCEEEEEEc
Q 005140 506 KLTTLKGK-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMA--TAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 506 ~~~~~~~~-----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~-~~~~~--~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
++..+..+ +.--+...|+|++|++|+. +|.|.+||+++ +..+. ..+...++.++++|-=..+|+++.
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t---dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDT---DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCC---CccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 44444333 2334667899999999987 99999999996 44232 255678899999999777777776
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=174.90 Aligned_cols=269 Identities=12% Similarity=0.189 Sum_probs=189.5
Q ss_pred cceEEEcCCCcEEEEEecCceEEeeccc-Ccc--eeeeec-----CCCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGAN-TFN--RLMRYA-----HPQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~-~~~--~~~~~~-----~~~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+.|+..++-..|+.++..-+.|+.+.. .+. ...++. +-.+..+.|+. +.++|||++.. |.
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n----------G~ 111 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN----------GV 111 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC----------Cc
Confidence 3456777888888888887777776551 111 112221 11266788875 46899999999 99
Q ss_pred EEEEEccC---CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccC
Q 005140 287 INIFDVRT---GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 287 I~iwd~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
|.+||+.. .+.+..|..|...+. .+.|++-...+|++++ ||+|++||+...+-........+.
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~-------------~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSAN-------------KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred EEEEecCccccchhhhHhhhhcccee-------------eeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 99999966 566778888887763 6888872335777888 999999999876655444455667
Q ss_pred eeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 363 VMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 363 v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
|.++.|+|.. .++++ +.+.+.
T Consensus 179 iRDV~fsp~~~~~F~s-------------------------------------------------~~dsG~--------- 200 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFAS-------------------------------------------------IHDSGY--------- 200 (839)
T ss_pred hhceeeccCCCceEEE-------------------------------------------------ecCCce---------
Confidence 8888888853 33333 222222
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEE
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFW 520 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~ 520 (712)
+++|+++...... ..+.+|.++|.++.|+|++.+||+|+.|+ .|+||++.+... .++.++. ..++..+.|
T Consensus 201 lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr~~lATGGRDK---~vkiWd~t~~~~----~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 201 LQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNREWLATGGRDK---MVKIWDMTDSRA----KPKHTINTIAPVGRVKW 271 (839)
T ss_pred EEEeeccCchhHH--HHhhcccCceEEEeecCCCceeeecCCCc---cEEEEeccCCCc----cceeEEeecceeeeeee
Confidence 5667766544332 45678999999999999999999999999 999999965432 2555555 448999999
Q ss_pred ccCCCe-EEEEeccCCCceEEEEECCccee---eeeccccceeeEEECC-CCCEEEEEEc
Q 005140 521 SPSGRF-IVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDP-TGRYVATAVT 575 (712)
Q Consensus 521 spdg~~-l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~sp-dg~~l~t~s~ 575 (712)
-|.-++ |++++... |-.|+|||+...-+ ...-|...++.++|.. |-..+.+++.
T Consensus 272 RP~~~~hLAtcsmv~-dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 272 RPARSYHLATCSMVV-DTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred ccCccchhhhhhccc-cceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 998765 55655555 88999999984322 2235678888999987 3345667766
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=172.34 Aligned_cols=242 Identities=14% Similarity=0.228 Sum_probs=179.6
Q ss_pred EEEec-CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 258 LIDFS-PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 258 ~i~~S-pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.+..+ |.++||+||+.| |.|++|++.... .+.++..|.+-+. .+.... +
T Consensus 29 ~Lq~da~~~ryLfTgGRD----------g~i~~W~~~~d~~~~s~~~~asme~HsDWVN-------------DiiL~~-~ 84 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRD----------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-------------DIILCG-N 84 (735)
T ss_pred hccccCCCCceEEecCCC----------ceEEEeccccccCCcccchhhhhhhhHhHHh-------------hHHhhc-C
Confidence 34444 467889999999 999999975332 2556666655432 344556 7
Q ss_pred CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEE-CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 331 DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSW-SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~-sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
++.|++++ |-+|++|+...+. .......|.+.|.+++. .++...+|+ ||-|..+.+|.++....+.+...+
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS-----gGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS-----GGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEe-----cCCCccEEEEEccCcchhhhhhcc
Confidence 88888888 9999999998664 33344567788999999 777777777 667776666655432211111100
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
. .+ ...+. ++..+|.+++-++.|..|+.|+..+
T Consensus 160 ~--------------------------------------------~t--~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 160 N--------------------------------------------VT--VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred c--------------------------------------------cc--cccCCCCCccceeeeecCCcceEEEecCccc
Confidence 0 00 01111 6688999999999998888888888
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeE
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDV 561 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~ 561 (712)
.|++||.++.. .+..+.+| .|..+..++||+.+++++. ||+|++||+...+++.+ .|...+.++
T Consensus 194 ---~lr~wDprt~~------kimkLrGHTdNVr~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 194 ---DLRLWDPRTCK------KIMKLRGHTDNVRVLLVNDDGTRLLSASS---DGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred ---ceEEecccccc------ceeeeeccccceEEEEEcCCCCeEeecCC---CceEEeeeccccceeeeEEeccCceEEE
Confidence 89999998765 56666666 6899999999999999998 99999999998888876 566789999
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
..+|+=.++.+|+. |+.|..=++..
T Consensus 262 ~~~~sf~~vYsG~r-----d~~i~~Tdl~n 286 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGR-----DGNIYRTDLRN 286 (735)
T ss_pred eeCCCcceEEecCC-----CCcEEecccCC
Confidence 99999999999999 88888777654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-17 Score=164.39 Aligned_cols=274 Identities=13% Similarity=0.174 Sum_probs=204.8
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee--eeec-CCC-eeE-EEecC-CCCEEEEEcCCCC
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL--MRYA-HPQ-VKL-IDFSP-GEKYLVTYSSHEP 276 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~--~~~~-~~~-v~~-i~~Sp-dg~~l~t~s~d~~ 276 (712)
+....+.+|...|..++..+.+ .++++++++ +++|.-. ..+.+ ..+. +.+ |.+ +++-+ ++-.|++|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D-- 80 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD-- 80 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeeccc--
Confidence 3455678999999888876554 889999998 8899976 33322 2332 334 444 77775 44469999999
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
.+|.+|.+.+..++..+.+|...++ ++.-.. ++. +++++ |.++++|..... ...
T Consensus 81 --------~~i~v~~~~~~~P~~~LkgH~snVC-------------~ls~~~-~~~-~iSgSWD~TakvW~~~~l--~~~ 135 (745)
T KOG0301|consen 81 --------TTIIVFKLSQAEPLYTLKGHKSNVC-------------SLSIGE-DGT-LISGSWDSTAKVWRIGEL--VYS 135 (745)
T ss_pred --------ceEEEEecCCCCchhhhhcccccee-------------eeecCC-cCc-eEecccccceEEecchhh--hcc
Confidence 8999999999999999999998872 343333 444 78888 999999986633 333
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
...|...|..+..-|.+ .+++ |++|..+++|.= |+.
T Consensus 136 l~gH~asVWAv~~l~e~-~~vT-----gsaDKtIklWk~--------------------------~~~------------ 171 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVT-----GSADKTIKLWKG--------------------------GTL------------ 171 (745)
T ss_pred cCCcchheeeeeecCCC-cEEe-----ccCcceeeeccC--------------------------Cch------------
Confidence 55788889999888888 4455 778887776521 110
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
..++.+|.+.|+.+++-|++ .|+++++|| .|++|++. +. .+..+.+|
T Consensus 172 --------------------l~tf~gHtD~VRgL~vl~~~-~flScsNDg---~Ir~w~~~-ge------~l~~~~ghtn 220 (745)
T KOG0301|consen 172 --------------------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDG---SIRLWDLD-GE------VLLEMHGHTN 220 (745)
T ss_pred --------------------hhhhccchhheeeeEEecCC-CeEeecCCc---eEEEEecc-Cc------eeeeeeccce
Confidence 13456899999999998765 477889999 99999993 22 56666666
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
-+.++...+++..+++++. |++++||+.....+..+...-.+.++.+-++|. |++|++ ||.|+||...
T Consensus 221 ~vYsis~~~~~~~Ivs~gE---DrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S-----DG~VrVfT~~ 288 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGE---DRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGS-----DGRVRVFTVD 288 (745)
T ss_pred EEEEEEecCCCCeEEEecC---CceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEecc-----CceEEEEEec
Confidence 4788888888889999998 999999999855444455556888898888887 566777 8999999876
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-17 Score=171.74 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=201.1
Q ss_pred ceEEEEECCeeEEEecCCCCCCCccc-ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeE
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPV-YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKL 258 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~ 258 (712)
+.++.+..+.++.+|+. ..+..+.. +.+|...|.++++..-+.+|++|+.|. ++|||.. ++.++..+. |.. |.+
T Consensus 219 ~~~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQGHTSSVRC 296 (537)
T ss_pred CeEEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecCCCceEEE
Confidence 34556667778889999 45555555 999999999999998888999999998 8899988 999988885 655 777
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
+.. .+.++++|+.| .+|++|++.++..++.+.+|...+. ++. - ++.++++++
T Consensus 297 ~~~--~~~~~~sgs~D----------~tVkVW~v~n~~~l~l~~~h~~~V~-------------~v~--~-~~~~lvsgs 348 (537)
T KOG0274|consen 297 LTI--DPFLLVSGSRD----------NTVKVWDVTNGACLNLLRGHTGPVN-------------CVQ--L-DEPLLVSGS 348 (537)
T ss_pred EEc--cCceEeeccCC----------ceEEEEeccCcceEEEeccccccEE-------------EEE--e-cCCEEEEEe
Confidence 766 45678888999 8999999999999999999887763 344 4 678999998
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|++|.+|++.+++.+.....|...|.++.+.+. ..++. |+.|..+++|.+.... +
T Consensus 349 ~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S-----gs~D~~IkvWdl~~~~-~----------------- 404 (537)
T KOG0274|consen 349 YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS-----GSLDTTIKVWDLRTKR-K----------------- 404 (537)
T ss_pred cCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEe-----eeeccceEeecCCchh-h-----------------
Confidence 999999999999999998899999999987765 56665 6666555554433211 0
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
....+.+|..-+..+.+ .+++|++++.|+ +|++||..+
T Consensus 405 -------------------------------------c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~---~Ik~WD~~~ 442 (537)
T KOG0274|consen 405 -------------------------------------CIHTLQGHTSLVSSLLL--RDNFLVSSSADG---TIKLWDAEE 442 (537)
T ss_pred -------------------------------------hhhhhcCCccccccccc--ccceeEeccccc---cEEEeeccc
Confidence 11234455666644443 678999999999 999999977
Q ss_pred ccccCceeEEEEeCC---CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 498 AQHAGRVSKLTTLKG---KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+. .+..+.+ ..+..+++. -..+++++. +|.+++||+++++....
T Consensus 443 ~~------~~~~~~~~~~~~v~~l~~~--~~~il~s~~---~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 443 GE------CLRTLEGRHVGGVSALALG--KEEILCSSD---DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred Cc------eeeeeccCCcccEEEeecC--cceEEEEec---CCeeEEEecccCchhhh
Confidence 65 5555554 245666655 356666666 99999999998877664
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=171.88 Aligned_cols=233 Identities=16% Similarity=0.321 Sum_probs=174.5
Q ss_pred cccceEEEcC-CCcEEEEEecCc-eEEeecccC---cceeeee-cCCC-eeEEEecCCC-CEEEEEcCCCCCCCcCCCcc
Q 005140 214 WTESFVQWSP-LGTYLATVHRQG-AAVWGGANT---FNRLMRY-AHPQ-VKLIDFSPGE-KYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 214 ~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~---~~~~~~~-~~~~-v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~ 285 (712)
.++..|.|+. +.++|||++.+| |.+||+. . .+.+..| .|.. +.+++|++.. .+|++|+.| |
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln-k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD----------g 156 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLN-KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD----------G 156 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecC-ccccchhhhHhhhhccceeeeeeccCCccEEEecCCC----------c
Confidence 4566788885 568999999999 6799998 4 2333334 3554 9999999976 678899999 9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCe
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENV 363 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v 363 (712)
+|++||++..+...++.+....+. .++|+|+.+.+|+++. .|.+++||+..-. ...++..|.+.|
T Consensus 157 ~vK~~DlR~~~S~~t~~~nSESiR-------------DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 157 TVKCWDLRSKKSKSTFRSNSESIR-------------DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred eEEEEeeecccccccccccchhhh-------------ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 999999999988888888665553 6899997777888888 8999999998443 444566799999
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEE-EEEEcccccccccccccE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL-AVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~~~~~~~~~~~~~~~~~ 442 (712)
.++.|+|++.+||+ ||.|+.++||.+..+....+...+ ......++.|-|.-.+. ++++.-. ...+
T Consensus 224 ~c~nwhPnr~~lAT-----GGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~-------dtsV 290 (839)
T KOG0269|consen 224 LCLNWHPNREWLAT-----GGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVV-------DTSV 290 (839)
T ss_pred EEEeecCCCceeee-----cCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccc-------cceE
Confidence 99999999999999 999999999988865554433322 12233467899988754 3333211 1348
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCC
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDS 485 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~ 485 (712)
.+|+++..-+|. ..+..|...++.++|.. |-..|.+++.|+
T Consensus 291 ~VWDvrRPYIP~--~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 291 HVWDVRRPYIPY--ATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred EEEeeccccccc--eeeeccCccccceeccCCCceeeEeecCcc
Confidence 999999877776 44557899999999965 344555566666
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=152.54 Aligned_cols=323 Identities=15% Similarity=0.245 Sum_probs=203.3
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc--eEEeecccCcceeeeecCCCeeEEEe
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQVKLIDF 261 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~v~~i~~ 261 (712)
++.+.+.++.+..|+. .+..-.-.+......+.+++|||||+.|...+.=. |.||.+.++..........++..++|
T Consensus 63 ilC~~yk~~~vqvwsl-~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f 141 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSL-VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAF 141 (447)
T ss_pred eeeeeeccceEEEEEe-ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEE
Confidence 5556778888889998 34444445566678889999999997766665443 77999983333334444456999999
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--- 338 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--- 338 (712)
+|||++.+.++..+.. .-+.|.....-..++.|.......+ .+.||| ||..||...
T Consensus 142 ~~dg~f~ai~sRrDCk-------dyv~i~~c~~W~ll~~f~~dT~Dlt-------------gieWsP-dg~~laVwd~~L 200 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCK-------DYVQISSCKAWILLKEFKLDTIDLT-------------GIEWSP-DGNWLAVWDNVL 200 (447)
T ss_pred CCCCceeeeeecccHH-------HHHHHHhhHHHHHHHhcCCCccccc-------------CceECC-CCcEEEEecchh
Confidence 9999999988765111 1233333333445666766655432 589999 999888655
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
+-.|..|.-. -++..++|+|.+++|++ |+.|+..+|... +.|.
T Consensus 201 eykv~aYe~~------------lG~k~v~wsP~~qflav-----GsyD~~lrvlnh--------------------~tWk 243 (447)
T KOG4497|consen 201 EYKVYAYERG------------LGLKFVEWSPCNQFLAV-----GSYDQMLRVLNH--------------------FTWK 243 (447)
T ss_pred hheeeeeeec------------cceeEEEeccccceEEe-----eccchhhhhhce--------------------eeee
Confidence 3444444322 35888999999999999 888887765321 1222
Q ss_pred cCCCEEEEEEcccccc-------------------cccccccEEEEEEecC-----CcceeEEE------ecCCCCceEE
Q 005140 419 SSGDYLAVKVDRYTKT-------------------KKSTYTGFELFRIKER-----DIPIEVLE------LDNKNDKIIA 468 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~-------------------~~~~~~~~~l~~l~~~-----~~~~~~~~------l~~h~~~v~~ 468 (712)
+-|.++-.++-..... ......+..+|...+. ..++.... .++..-.+.-
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 2222211111100000 0000000011111100 01111111 1122345667
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
++||+|..++|+....-+ +.+.+||++... ....+ ..++|..+.|.|....|+++.. ...+++|.....
T Consensus 324 lafs~Ds~y~aTrnd~~P-nalW~Wdlq~l~------l~avLiQk~piraf~WdP~~prL~vctg---~srLY~W~psg~ 393 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYP-NALWLWDLQNLK------LHAVLIQKHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPSGP 393 (447)
T ss_pred eeecCCceEEeeecCCCC-ceEEEEechhhh------hhhhhhhccceeEEEeCCCCceEEEEcC---CceEEEEcCCCc
Confidence 999999999988776544 389999996533 22222 3568999999999888888775 678999999876
Q ss_pred eeeee-ccccceeeEEECCCCCEEEEEEc
Q 005140 548 ETMAT-AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 548 ~~~~~-~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
..+.. .....|.++.|.-+|.+++..+.
T Consensus 394 ~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 394 RVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred eEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 66654 45588999999999999999887
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-17 Score=154.58 Aligned_cols=306 Identities=14% Similarity=0.262 Sum_probs=187.9
Q ss_pred ccCCCCCceEEEEECCeeEEEecCCC----CC----CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc----
Q 005140 176 LTDEKARDQFVIRSGTDTEVLWNDAR----HL----KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA---- 242 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~w~~~~----~~----~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~---- 242 (712)
.+.+.....++...+|..+++|.... .+ .....+.+|...|+++.|+|+|.+||+|+.+| +.+|-..
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 33343334677788889999997631 11 12336789999999999999999999999999 7799543
Q ss_pred ----c-----C--cce--eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc
Q 005140 243 ----N-----T--FNR--LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 309 (712)
Q Consensus 243 ----~-----~--~~~--~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~ 309 (712)
+ . +.. +.+.+...|..++|+|++.++++++.+ ..+++||+..|..+..+..|...+.
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d----------ns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD----------NSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc----------ceEEEEEeccceeEeeccccccccc
Confidence 1 0 111 222234459999999999999999999 8999999999999999998877652
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-------------------cccccC----eee
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------------------SLKVEN----VMD 365 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-------------------~~~~~~----v~~ 365 (712)
.++|.| -++|+++.+ |...+++.+.....+... ..|.+. ...
T Consensus 170 -------------gvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 170 -------------GVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred -------------eeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 489999 999999988 766666655432222111 011111 345
Q ss_pred EEECCCCCeEEEEeecCCCCCCC--eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQP--ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
++|+|+|..|++-...--.+.+. ...+.|+ ++.+.. .++.+ -+|.--.+++... ..
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfs---rk~l~r------P~~~l-p~~~k~~lavr~~------------pV 293 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFS---RKDLKR------PAARL-PSPKKPALAVRFS------------PV 293 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeec---cccccC------ceeec-CCCCcceEEEEee------------ee
Confidence 78999999888610000000000 0011111 111100 00000 0111112222211 12
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
.|.++.... ... +---|-+-.||++..+ .|.|||.++.. .+..+..++...++.++||+|
T Consensus 294 y~elrp~~~-----------~~~--~~~lpyrlvfaiAt~~----svyvydtq~~~---P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 294 YYELRPLSS-----------EKF--LFVLPYRLVFAIATKN----SVYVYDTQTLE---PLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred EEEeccccc-----------ccc--ccccccceEEEEeecc----eEEEecccccc---ceEEEeeeeeeeecceeecCC
Confidence 333321110 000 1122556667776665 59999986532 233455566678999999999
Q ss_pred CCeEEEEeccCCCceEEEEECCcceee
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
|.+|++.+. ||.+.+..++..++-
T Consensus 354 g~~l~vSS~---DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 354 GSVLLVSST---DGFCSLVTFEPWELG 377 (434)
T ss_pred CcEEEEecc---CCceEEEEEcchhcc
Confidence 999999998 999888877755543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=157.71 Aligned_cols=285 Identities=14% Similarity=0.213 Sum_probs=186.2
Q ss_pred EEECCeeEEEecCCC-CCCCcccccCCCcccceEEEcCCCcEEEEEec--Cc-eEEeecccC---cceeeeecCCCeeEE
Q 005140 187 IRSGTDTEVLWNDAR-HLKPEPVYKRSYWTESFVQWSPLGTYLATVHR--QG-AAVWGGANT---FNRLMRYAHPQVKLI 259 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~--~~-i~iw~~~~~---~~~~~~~~~~~v~~i 259 (712)
+.++...+.+|+... ..++....+.....+.++.|+.... |++++. +. +++|.-.+. -.++.......-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 344445566998621 2222222222223488999998765 555544 44 568865522 112222222333444
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+......|+++|+.. ++|+|||++...+.+.++.|...++ ++.+.- .+.|||+++
T Consensus 86 ~~~s~S~y~~sgG~~----------~~Vkiwdl~~kl~hr~lkdh~stvt-------------~v~YN~-~DeyiAsvs~ 141 (673)
T KOG4378|consen 86 ACASQSLYEISGGQS----------GCVKIWDLRAKLIHRFLKDHQSTVT-------------YVDYNN-TDEYIASVSD 141 (673)
T ss_pred hhhhcceeeeccCcC----------ceeeehhhHHHHHhhhccCCcceeE-------------EEEecC-CcceeEEecc
Confidence 444444899999999 9999999987777888888887664 677887 889999999
Q ss_pred CCeEEEEEcCCceecccccccc-cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 KNMISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
.|.|.|..+.++.....+.... ..|.-+.|||..++++.. ++.++.+.
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~----asd~G~Vt--------------------------- 190 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI----ASDKGAVT--------------------------- 190 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe----eccCCeEE---------------------------
Confidence 8899999988765443332221 235567777776666543 33333333
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|++....... .-...|..+...++|+|.. ..|++.+.|. .|.+||+.
T Consensus 191 --------------------------lwDv~g~sp~~--~~~~~HsAP~~gicfspsne~l~vsVG~Dk---ki~~yD~~ 239 (673)
T KOG4378|consen 191 --------------------------LWDVQGMSPIF--HASEAHSAPCRGICFSPSNEALLVSVGYDK---KINIYDIR 239 (673)
T ss_pred --------------------------EEeccCCCccc--chhhhccCCcCcceecCCccceEEEecccc---eEEEeecc
Confidence 33332211000 1123678899999999965 5566667788 99999997
Q ss_pred cccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee---eeeccccceeeEEECCCC
Q 005140 497 TAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTG 567 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~spdg 567 (712)
+.. ....+. .++...++|+++|.+|+.|.. .|.|..||++..+. +...|...|++++|-|.-
T Consensus 240 s~~------s~~~l~y~~Plstvaf~~~G~~L~aG~s---~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQA------STDRLTYSHPLSTVAFSECGTYLCAGNS---KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccc------ccceeeecCCcceeeecCCceEEEeecC---CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 543 222332 568899999999999999998 99999999995443 234677889999998764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-17 Score=163.54 Aligned_cols=339 Identities=11% Similarity=0.099 Sum_probs=220.5
Q ss_pred EEEEECCeeEEEecCCCCCC-----CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee-cCCC
Q 005140 185 FVIRSGTDTEVLWNDARHLK-----PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHPQ 255 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~~ 255 (712)
++.++.|+.+++|+...... ....++.|..=|+.++.-.+|+.|++++.|. |++|+.. ... .+.++ .|.+
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~-~~~~~c~stir~H~D 118 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH-KDNTFCMSTIRTHKD 118 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc-cCcchhHhhhhcccc
Confidence 34445577888999854333 3567788998889999999999999999998 8899988 432 22233 3554
Q ss_pred -eeEEEe-cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 256 -VKLIDF-SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 256 -v~~i~~-Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|.|++. -++...+|+|+-| +.|.+||+.+| ..+.++..-...... .+...+ .+ +++-.+ .|
T Consensus 119 YVkcla~~ak~~~lvaSgGLD----------~~IflWDin~~~~~l~~s~n~~t~~sl~--sG~k~s-iY-SLA~N~-t~ 183 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLD----------RKIFLWDINTGTATLVASFNNVTVNSLG--SGPKDS-IY-SLAMNQ-TG 183 (735)
T ss_pred hheeeeecccCceeEEecCCC----------ccEEEEEccCcchhhhhhccccccccCC--CCCccc-ee-eeecCC-cc
Confidence 999999 8888999999999 99999999888 344444332221110 011111 12 577788 88
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
..|++++ .+.|++||..+++.+-+...|..+|..+..++||..+++ ++.|+.+++ |++...+.+.+...+..
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls-----~sSDgtIrl--WdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS-----ASSDGTIRL--WDLGQQRCLATYIVHKE 256 (735)
T ss_pred eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee-----cCCCceEEe--eeccccceeeeEEeccC
Confidence 8899988 999999999999888888899999999999999999999 777777664 56666667776666666
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
....+.-+|+=.+++++..++. +..-+++.. ...++-+ ....+|..+..+-..+-+-++..|+ .|
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~---------i~~Tdl~n~--~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds---~I 321 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGN---------IYRTDLRNP--AKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDS---SI 321 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCc---------EEecccCCc--hhheEee-cCCCchhhhhhccccCCceeeeccc---cc
Confidence 6666666777778888777765 233333322 1111111 1244555555554333334455555 66
Q ss_pred EEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCc-ceeeeeccccceeeEEECCCCCE
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMATAEHFMATDVEWDPTGRY 569 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~-~~~~~~~~~~~v~~~~~spdg~~ 569 (712)
+-|...- .+.+++.|+....++ +.....++... -..+. .....+...+.-.|-|+
T Consensus 322 ~rW~~~~-------------------~~~l~~s~~~~~~~T----~~~~~~~~~~~tp~~vi-~Gg~ai~k~~mL~dkRh 377 (735)
T KOG0308|consen 322 KRWKLEP-------------------DIALSVSGDLDFFST----DSNNHSCDLTNTPDSVI-PGGAAIKKHAMLNDKRH 377 (735)
T ss_pred eecCCcc-------------------ccccccCCCCCcccc----cCCCccccccCCCceec-cCchhhhhhhhhcCcce
Confidence 6665421 113444555444332 33333333221 11111 11234455566667888
Q ss_pred EEEEEccceeccccEEEEEec
Q 005140 570 VATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++|-.. .|.+.+||+-
T Consensus 378 VlTkDa-----~gnv~lwDIl 393 (735)
T KOG0308|consen 378 VLTKDA-----KGNVALWDIL 393 (735)
T ss_pred EeeecC-----CCCEEEEEee
Confidence 888888 8889999864
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-16 Score=143.53 Aligned_cols=252 Identities=17% Similarity=0.328 Sum_probs=175.9
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
|.+ |.++.|.+-|+++|+|+.| ++|+|||..+. .+-...+.|.+.+ | .+.|.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsD----------q~vkI~d~~~~s~~W~~Ts~Wrah~~Si------------~-rV~WA 68 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSD----------QTVKIWDSTSDSGTWSCTSSWRAHDGSI------------W-RVVWA 68 (361)
T ss_pred CcceeeeeeecccCceeeeccCC----------CcEEEEeccCCCCceEEeeeEEecCCcE------------E-EEEec
Confidence 444 9999999999999999999 99999996433 2455667777766 5 47886
Q ss_pred CC-CCCEEEEec-CCeEEEEEcCCce-------e--cccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEE
Q 005140 328 GG-KDKYFAKLG-KNMISVYETESFT-------L--IDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 328 ~~-dg~~la~~~-d~~i~iwd~~~~~-------~--~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
+. -|+.+|+++ |+++.||+-.... - .....-....|.++.|+|. |-.||+ ++.|+.+|| |
T Consensus 69 hPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-----~~aDG~lRI--Y 141 (361)
T KOG2445|consen 69 HPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-----ASADGILRI--Y 141 (361)
T ss_pred CccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-----eccCcEEEE--E
Confidence 53 588999999 9999999853111 1 1111123345999999997 667777 566666554 5
Q ss_pred ecCCccceee-------------eeeeeecceeEEECcC---CCEEEEEEcccccccccccccEEEEEEecCCcc-eeEE
Q 005140 395 QIPSKEELRQ-------------KNLFSVSDCKMYWQSS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVL 457 (712)
Q Consensus 395 ~~~~~~~~~~-------------~~~~~~~~~~~~~s~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~ 457 (712)
+.+..-.+.. ...+.....++.|+|. ..+|+++++... .......||...+.+.. ...-
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a----~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA----PHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC----ccccceEEEEecCCcceeeeeh
Confidence 5444322221 1123445567789864 358888887622 11223678888776633 3334
Q ss_pred EecCCCCceEEEEEeeC----CCEEEEEEcCCCCCeEEEEEeecc--------------cccCceeEEEEeCCC--ceeE
Q 005140 458 ELDNKNDKIIAFAWEPK----GHRFAVIHGDSPRPDISFYSMRTA--------------QHAGRVSKLTTLKGK--QANA 517 (712)
Q Consensus 458 ~l~~h~~~v~~~~~sp~----g~~l~~~~~d~~~~~v~i~d~~~~--------------~~~~~~~~~~~~~~~--~v~~ 517 (712)
++++|..+|++++|+|+ -..||+++.|| |+||.+... .....+..+..+.+| .+..
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg----v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG----VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCc----EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence 57899999999999995 35788888887 999999731 111234556666665 6899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+.|+-.|..|++.+. ||.|++|...
T Consensus 294 v~wNmtGtiLsStGd---DG~VRLWkan 318 (361)
T KOG2445|consen 294 VRWNMTGTILSSTGD---DGCVRLWKAN 318 (361)
T ss_pred EEEeeeeeEEeecCC---Cceeeehhhh
Confidence 999999999999988 9999999765
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-16 Score=142.62 Aligned_cols=289 Identities=17% Similarity=0.261 Sum_probs=179.3
Q ss_pred cCCCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce--eeeccCCCcc-cc-cCCCCCcCCCCcCeEEe
Q 005140 252 AHPQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFKGSADE-FA-VGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 252 ~~~~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~--~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 326 (712)
|...|.++...| .|+|+++|+.| |.|.|||++.... ...+...... +. +...+...+++ .+.|
T Consensus 42 HgGsvNsL~id~tegrymlSGgad----------gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is--s~~W 109 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGAD----------GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS--SAIW 109 (397)
T ss_pred CCCccceeeeccccceEEeecCCC----------ccEEEEEeccccchhhccceeheeeeccccCCccceeeee--eeEE
Confidence 334589999888 48999999999 9999999965431 0000000000 00 00111122222 6788
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCceeccccccccc-CeeeEEECCCCC---eEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
-|.|...|.+++ |.+++|||.++.+..... .++ .|..-+|||-.. .||+ |..+. .
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~-----gtr~~--~----------- 169 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAA-----GTRDV--Q----------- 169 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEE-----ecCCC--c-----------
Confidence 886666777777 999999999977654332 232 366667777421 2232 22222 2
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEE-EE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF-AV 480 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l-~~ 480 (712)
++|.++.... ....|.+|.+.|.++.|+|...++ ++
T Consensus 170 ----------------------------------------VrLCDi~SGs---~sH~LsGHr~~vlaV~Wsp~~e~vLat 206 (397)
T KOG4283|consen 170 ----------------------------------------VRLCDIASGS---FSHTLSGHRDGVLAVEWSPSSEWVLAT 206 (397)
T ss_pred ----------------------------------------EEEEeccCCc---ceeeeccccCceEEEEeccCceeEEEe
Confidence 3333333221 225677999999999999988765 55
Q ss_pred EEcCCCCCeEEEEEeecccccCce---------eEEE--EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRV---------SKLT--TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~---------~~~~--~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++.|+ .|++||++...+-..+ ..+. .-..+.++.++|+.+|+++++.+. |..+++|+..+|+.
T Consensus 207 gsaDg---~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 207 GSADG---AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---DDRIRVWNMESGRN 280 (397)
T ss_pred cCCCc---eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---ccceEEeecccCcc
Confidence 66688 9999999864331111 0011 111235789999999999999998 99999999886543
Q ss_pred eee-----cc----ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee--ecccceeeeEEecCCCCCCCh
Q 005140 550 MAT-----AE----HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR--TLKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 550 ~~~-----~~----~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~--~~~~~i~~~~w~p~~~~l~s~ 617 (712)
... .+ +..+. +. +.+...++.--. ++++.++++- |..+.. .|...+.+..++|+-+...++
T Consensus 281 tl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~-----~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 281 TLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPN-----DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred cccccccccccccccceEE-Ee-ecccceEEEEec-----CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 221 11 11122 22 333333333333 6778888754 554443 356788899999999999999
Q ss_pred hhHHHHHHHHH
Q 005140 618 EKEEEIAKNLK 628 (712)
Q Consensus 618 ~~d~~i~~~~~ 628 (712)
..++.|--++.
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99988876654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-15 Score=141.30 Aligned_cols=235 Identities=14% Similarity=0.254 Sum_probs=171.8
Q ss_pred CcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++.++.|..++..|..|+.+|.+++... .+........++ |--+.||.+ .+|..+.+.+ ..+++.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qp--------r~Lkv~ 73 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQP--------RKLKVV 73 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecC-chHHhhcccCCCeEEEEeecccc--eeEEEecCCC--------ceEEEE
Confidence 346677889999999999999999999988 555422222333 666777754 5555555421 579999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccccc---ccCeeeEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLK---VENVMDFS 367 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~ 367 (712)
+...+..+..+..+.... ++++.. +.|+.+-...|.|||+.+++++...... ..++..++
T Consensus 74 ~~Kk~~~ICe~~fpt~IL--------------~VrmNr---~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 74 HFKKKTTICEIFFPTSIL--------------AVRMNR---KRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EcccCceEEEEecCCceE--------------EEEEcc---ceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 998888888777666544 566644 6777777666999999999998765432 33577777
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
.++.+.+||+ .+....+.|.+|+..+.
T Consensus 137 ~n~~n~ylAy-----p~s~t~GdV~l~d~~nl------------------------------------------------ 163 (391)
T KOG2110|consen 137 PNNANCYLAY-----PGSTTSGDVVLFDTINL------------------------------------------------ 163 (391)
T ss_pred cCCCCceEEe-----cCCCCCceEEEEEcccc------------------------------------------------
Confidence 7777889988 33333444444433211
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----ceeEEEEccC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPS 523 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spd 523 (712)
.++ ..+.+|.+++-+++|+|+|.+||+++..|+ -|++|.+.+++ .+..+..+ .|.+++|+|+
T Consensus 164 ----~~v--~~I~aH~~~lAalafs~~G~llATASeKGT--VIRVf~v~~G~------kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 164 ----QPV--NTINAHKGPLAALAFSPDGTLLATASEKGT--VIRVFSVPEGQ------KLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred ----eee--eEEEecCCceeEEEECCCCCEEEEeccCce--EEEEEEcCCcc------EeeeeeCCceeeEEEEEEECCC
Confidence 111 234589999999999999999999999884 78999997766 56666644 5789999999
Q ss_pred CCeEEEEeccCCCceEEEEECC
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+++|++.+. .++|++|.++
T Consensus 230 s~~L~~sS~---TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSN---TETVHIFKLE 248 (391)
T ss_pred CCeEEEecC---CCeEEEEEec
Confidence 999999987 8999999886
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=148.14 Aligned_cols=311 Identities=10% Similarity=0.155 Sum_probs=215.9
Q ss_pred cCCCcccceEEEcC-----CCcEEEEEecCceEEeecccCc--ceeeeec---CC-CeeEEEecCC----CCEEEEEcCC
Q 005140 210 KRSYWTESFVQWSP-----LGTYLATVHRQGAAVWGGANTF--NRLMRYA---HP-QVKLIDFSPG----EKYLVTYSSH 274 (712)
Q Consensus 210 ~~~~~~v~~v~~Sp-----dg~~lat~~~~~i~iw~~~~~~--~~~~~~~---~~-~v~~i~~Spd----g~~l~t~s~d 274 (712)
..|..++..++|.+ .-+.+||++.+.+.||...+.+ ..+.++. ++ ....++|+-| ..+||.++.-
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 45667888888885 3357888888888898876433 3344442 33 2677888765 3478888887
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI 353 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~ 353 (712)
|.|+|.|+.+++....+.+|...+. .+++.|.+.+++++++ |.+|++|++.+...+
T Consensus 115 ----------GvIrVid~~~~~~~~~~~ghG~sIN-------------eik~~p~~~qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 115 ----------GVIRVIDVVSGQCSKNYRGHGGSIN-------------EIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred ----------eEEEEEecchhhhccceeccCccch-------------hhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence 9999999999999999999988764 6888883446888888 999999999998866
Q ss_pred ccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc
Q 005140 354 DKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 354 ~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
... ..|...|.++.|+++|.+|++ +|.|...++|.++.+.....- ...+.|+|++...-+.+..
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~S-----cGmDhslk~W~l~~~~f~~~l--------E~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIAS-----CGMDHSLKLWRLNVKEFKNKL--------ELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeec-----cCCcceEEEEecChhHHhhhh--------hhhcccCCCCccCcCCccc
Confidence 433 457777999999999999999 889999998887765543211 1123466665432111000
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec-cc-------ccC
Q 005140 431 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQ-------HAG 502 (712)
Q Consensus 431 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~-------~~~ 502 (712)
..+.+.. +-.-|...|-|+.|- |+++++-+.++ .|..|..-. .. ...
T Consensus 239 -----------~~fp~fs---------t~diHrnyVDCvrw~--gd~ilSkscen---aI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 239 -----------THFPDFS---------TTDIHRNYVDCVRWF--GDFILSKSCEN---AIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred -----------ccccccc---------ccccccchHHHHHHH--hhheeecccCc---eEEEEecchhhhhhhccCCCcc
Confidence 0111111 112467788888874 57787777777 888887721 11 111
Q ss_pred ceeEEEEeCCC--cee--EEEEccCCCeEEEEeccCCCceEEEEECCcceee------eeccccceeeEEECCCCCEEEE
Q 005140 503 RVSKLTTLKGK--QAN--ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM------ATAEHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 503 ~~~~~~~~~~~--~v~--~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~------~~~~~~~v~~~~~spdg~~l~t 572 (712)
....+..+.-. .+. .++|.|-++.||.+.. .|.|++||++..... .......|...+||.||..|+.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq---~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ---SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHHHHHHhhccC---CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEE
Confidence 12233444322 233 3567788999999988 999999999865431 1233467889999999999999
Q ss_pred EEccceeccccEEEEEe
Q 005140 573 AVTSVHEMENGFNIWSF 589 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~ 589 (712)
... |+.|.=||.
T Consensus 371 vcd-----d~~Vwrwdr 382 (385)
T KOG1034|consen 371 VCD-----DGTVWRWDR 382 (385)
T ss_pred EeC-----CCcEEEEEe
Confidence 999 899988884
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-16 Score=142.77 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=186.5
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
+-+.+.-++| ....+++++-|+...+|+.+.. .....-.|..++.+++|.++ ..+++|+-|| |+++|+. +....
T Consensus 14 d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln-~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSP-SSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN-TGNED 88 (323)
T ss_pred hceeeEEEcC-cCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEec-CCcce
Confidence 4445555664 4445677789999999998433 33334467889999999985 4578888888 9999999 55555
Q ss_pred eeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 249 MRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 249 ~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
....|. +|+||.+++-...+++|+.| ++|++||.+.....-.+..... ..+.+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD----------~~ik~wD~R~~~~~~~~d~~kk----------------Vy~~~ 142 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWD----------KTIKFWDPRNKVVVGTFDQGKK----------------VYCMD 142 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccC----------ccEEEEeccccccccccccCce----------------EEEEe
Confidence 555555 59999999988899999999 9999999876544445544432 23445
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
- .|..|+.+. +..+.+||+++....... .++. .+.++++-|++.-.++ ++-++.+.+-.++.. ....
T Consensus 143 v-~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky-qtR~v~~~pn~eGy~~-----sSieGRVavE~~d~s--~~~~ 213 (323)
T KOG1036|consen 143 V-SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY-QTRCVALVPNGEGYVV-----SSIEGRVAVEYFDDS--EEAQ 213 (323)
T ss_pred c-cCCEEEEeecCceEEEEEcccccchhhhcccccee-EEEEEEEecCCCceEE-----EeecceEEEEccCCc--hHHh
Confidence 5 666676655 999999999976643211 1121 3789999997766666 556665555444432 1100
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.+..++ +.++...++.. + -.+|++++|+|-...||+++.
T Consensus 214 -----------------skkyaF----------------kCHr~~~~~~~-----~---~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 214 -----------------SKKYAF----------------KCHRLSEKDTE-----I---IYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred -----------------hhceeE----------------EeeecccCCce-----E---EEEeceeEeccccceEEecCC
Confidence 111111 22222222211 1 358999999999999999999
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
|| .|.+||+.+.+ .+..+. ...|.+++|+-+|..||+++.
T Consensus 253 DG---~V~~Wd~~~rK------rl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DG---IVNIWDLFNRK------RLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred Cc---eEEEccCcchh------hhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99 99999996544 334443 336899999999999999875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.6e-17 Score=173.08 Aligned_cols=241 Identities=19% Similarity=0.352 Sum_probs=173.8
Q ss_pred cCeEEecCCCCCE----EEEec-CCeEEEEEcCCc------eecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCC
Q 005140 321 WPVFRWGGGKDKY----FAKLG-KNMISVYETESF------TLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQP 388 (712)
Q Consensus 321 ~~~~~~s~~dg~~----la~~~-d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~ 388 (712)
|..++|++ .|.. ||.+. ||.|.+|+.... .++..+..|.+.|..+.|++... .||. ++..
T Consensus 67 F~kL~W~~-~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS-------Ga~~ 138 (1049)
T KOG0307|consen 67 FNKLAWGS-YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS-------GADD 138 (1049)
T ss_pred ceeeeecc-cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec-------cCCC
Confidence 44789988 7765 66666 999999997642 24555667888899999999865 7776 5555
Q ss_pred eEEEEEecCCccc-eee-eeeeeecceeEEECcCCCEE-EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc
Q 005140 389 ARVSLVQIPSKEE-LRQ-KNLFSVSDCKMYWQSSGDYL-AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK 465 (712)
Q Consensus 389 ~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~s~~g~~l-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~ 465 (712)
+.|++||+...+. ... .......+..++|+..-.++ +.++.++. ..+|+++.+ .++-.+...+....
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~---------~~iWDlr~~-~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR---------AVIWDLRKK-KPIIKLSDTPGRMH 208 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC---------ceeccccCC-CcccccccCCCccc
Confidence 5666677655332 111 11134455667898876654 44544444 689999976 33322222222345
Q ss_pred eEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC-CeEEEEeccCCCceEEE
Q 005140 466 IIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG-RFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 466 v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg-~~l~~~~~~~~dg~v~i 541 (712)
+..++|+|+. ..++++++|...+.|.+||++.... +++.+.+| .|.++.|++.+ ++|++++. |+.+.+
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgk---D~~ii~ 280 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGK---DNRIIC 280 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccC---CCCeeE
Confidence 7789999965 6788888887777999999976543 55555555 68999999977 78888888 999999
Q ss_pred EECCcceeeeeccc--cceeeEEECCCCC-EEEEEEccceeccccEEEEEecCc
Q 005140 542 YNVDELETMATAEH--FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 542 wd~~~~~~~~~~~~--~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|+.++++++..... ..+..+.|+|..- .++.++- ||.|.||++.|.
T Consensus 281 wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf-----dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF-----DGKISIYSLQGT 329 (1049)
T ss_pred ecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee-----ccceeeeeeecC
Confidence 99999999987544 6789999999776 6666677 999999998754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-16 Score=145.08 Aligned_cols=278 Identities=15% Similarity=0.240 Sum_probs=179.3
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee------eccCCCcccccCCCCCcCCCCcCeEEec--
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR------DFKGSADEFAVGGTGGVAGVSWPVFRWG-- 327 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 327 (712)
...+.|||||..|++-+.+ ..+.+|++...-.-. .+..+.. +.......+. ..+|-
T Consensus 52 ~kgckWSPDGSciL~~sed----------n~l~~~nlP~dlys~~~~~~~~~~~~~~-~r~~eg~tvy-----dy~wYs~ 115 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSED----------NCLNCWNLPFDLYSKKADGPLNFSKHLS-YRYQEGETVY-----DYCWYSR 115 (406)
T ss_pred hccceeCCCCceEEeeccc----------CeeeEEecChhhcccCCCCcccccccee-EEeccCCEEE-----EEEeeec
Confidence 5688999999999999999 889999974211000 0110100 0000011112 23443
Q ss_pred -----CCCCCEEEEec-CCeEEEEEcCCceecccccc--cc---cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 328 -----GGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KV---ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 328 -----~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
| +..++|+.+ +.-|++||.-+|++...... |. ....+++|+|||..|.. +....++|+...-
T Consensus 116 M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa------GykrcirvFdt~R 188 (406)
T KOG2919|consen 116 MKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA------GYKRCIRVFDTSR 188 (406)
T ss_pred cccCCC-ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee------cccceEEEeeccC
Confidence 5 667888888 99999999999987665433 22 24678899999998874 3444545433221
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-C
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-G 475 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g 475 (712)
|-... .+|..-.++ . .+..+-|.+++|+|. .
T Consensus 189 pGr~c-----------------------------------------~vy~t~~~~------k-~gq~giisc~a~sP~~~ 220 (406)
T KOG2919|consen 189 PGRDC-----------------------------------------PVYTTVTKG------K-FGQKGIISCFAFSPMDS 220 (406)
T ss_pred CCCCC-----------------------------------------cchhhhhcc------c-ccccceeeeeeccCCCC
Confidence 11110 000000000 0 022677889999994 5
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-eee
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT 552 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~~~ 552 (712)
+.+++++... .+-||.-..+. ++..+.++ .|+.++|.++|+.|++|+.. +-.|..||++.... +..
T Consensus 221 ~~~a~gsY~q---~~giy~~~~~~------pl~llggh~gGvThL~~~edGn~lfsGaRk--~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 221 KTLAVGSYGQ---RVGIYNDDGRR------PLQLLGGHGGGVTHLQWCEDGNKLFSGARK--DDKILCWDIRYSRDPVYA 289 (406)
T ss_pred cceeeecccc---eeeeEecCCCC------ceeeecccCCCeeeEEeccCcCeecccccC--CCeEEEEeehhccchhhh
Confidence 5777777655 67777764433 55555544 69999999999999998752 77899999985332 222
Q ss_pred --cc---ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC--ce--eeeecccceeeeEEecCCCCCCChhhH
Q 005140 553 --AE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--KL--LYRTLKDHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 553 --~~---~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~~--~~~~~~~~i~~~~w~p~~~~l~s~~~d 620 (712)
.| ...-.-+...|+|++|++|+. ||.|++||+.+ +. +...+.+.++.++++|--+.+++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~t-----dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDT-----DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCC-----CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 11 223335677899999999999 99999999974 42 333466889999999998888887754
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-18 Score=171.74 Aligned_cols=238 Identities=13% Similarity=0.296 Sum_probs=188.6
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
+++|+.. .+ ..|...|.++..-..++.+++|+.+ ..+.+|.+..-..+..|.+|...+.
T Consensus 16 Lr~~~~~-~~----~~hsaav~~lk~~~s~r~~~~Gg~~----------~k~~L~~i~kp~~i~S~~~hespIe------ 74 (825)
T KOG0267|consen 16 LRVWDTR-EF----VAHSAAVGCLKIRKSSRSLVTGGED----------EKVNLWAIGKPNAITSLTGHESPIE------ 74 (825)
T ss_pred cccccch-hh----hhhhhhhceeeeeccceeeccCCCc----------eeeccccccCCchhheeeccCCcce------
Confidence 6677766 21 1122347777777778999999999 7888999877677778888887764
Q ss_pred cCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
++.|++ +..+|+.+. +|+|++||+..++.+..+..|...+..+.|+|-+.+.+. ++.+...
T Consensus 75 -------Sl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~-----gStdtd~----- 136 (825)
T KOG0267|consen 75 -------SLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFAS-----GSTDTDL----- 136 (825)
T ss_pred -------eeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecc-----ccccccc-----
Confidence 799999 999999888 999999999999888877788888888888888877765 3344333
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
.+|+++..+.. ....+|...+..+.|+|+
T Consensus 137 ------------------------------------------------~iwD~Rk~Gc~---~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 137 ------------------------------------------------KIWDIRKKGCS---HTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred ------------------------------------------------eehhhhccCce---eeecCCcceeEEEeecCC
Confidence 44554433322 334467888999999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
|++++.++.|. .++|||+..+. .+..+..| .+..+.|+|..-.++.|+. |++++|||+++.+++..
T Consensus 166 Gr~v~~g~ed~---tvki~d~~agk------~~~ef~~~e~~v~sle~hp~e~Lla~Gs~---d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 166 GRWVASGGEDN---TVKIWDLTAGK------LSKEFKSHEGKVQSLEFHPLEVLLAPGSS---DRTVRFWDLETFEVISS 233 (825)
T ss_pred CceeeccCCcc---eeeeecccccc------cccccccccccccccccCchhhhhccCCC---CceeeeeccceeEEeec
Confidence 99999999988 99999997665 56666654 6788889999988999988 99999999999998876
Q ss_pred c--cccceeeEEECCCCCEEEEEEc
Q 005140 553 A--EHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 553 ~--~~~~v~~~~~spdg~~l~t~s~ 575 (712)
. ....|.+..|+|+|+.+++|..
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cCCccCCceeeeecCCceeeecCch
Confidence 4 3478999999999999988876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=142.46 Aligned_cols=302 Identities=14% Similarity=0.191 Sum_probs=179.8
Q ss_pred CCceEEEEECCeeEEEecCCCCC--CCcccc--cCCCcccceEEEcCC----CcEEEEEecCc-eEEeecccCcceeeee
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHL--KPEPVY--KRSYWTESFVQWSPL----GTYLATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~~~~~v~~v~~Spd----g~~lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
+..|.+++.|...+.++..+..+ .....+ ..|...-..++|+-| .-+||.++.-| |+|.|.. +.+....+
T Consensus 53 ~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-~~~~~~~~ 131 (385)
T KOG1034|consen 53 DEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-SGQCSKNY 131 (385)
T ss_pred CCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-hhhhccce
Confidence 33466677777777788875554 222222 235556677888764 34788888888 6799998 77766555
Q ss_pred -cCCC-eeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc---CCCcccccCCCCCcCCCCcCeEE
Q 005140 252 -AHPQ-VKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK---GSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 252 -~~~~-v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.|.+ |..|.|.|+. ++|++++.| ..|++|+++++.++..|- +|.+.+. ++.
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~egHrdeVL-------------SvD 188 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEGHRDEVL-------------SVD 188 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEecccccccCcEE-------------EEE
Confidence 4554 9999999986 789999999 899999999999988775 4666653 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|++ +|.+|++++ |.+|.+|+++..+...... .++.|+|++...-+ -.....+..|......
T Consensus 189 ~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~~~~~~t~~pf-------pt~~~~fp~fst~diH---- 250 (385)
T KOG1034|consen 189 FSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLE------LSITYSPNKTTRPF-------PTPKTHFPDFSTTDIH---- 250 (385)
T ss_pred EcC-CCCeeeccCCcceEEEEecChhHHhhhhh------hhcccCCCCccCcC-------Cccccccccccccccc----
Confidence 999 999999999 9999999998433221110 11333443322111 0000000000000000
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec-----------CCc--ceeEEEecCCCCceEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE-----------RDI--PIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~-----------~~~--~~~~~~l~~h~~~v~~~~~ 471 (712)
-..++++ .|- |.++++.+..+. +..|.-.. ... ....+.++...-...-++|
T Consensus 251 --rnyVDCv--rw~--gd~ilSkscena---------I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 251 --RNYVDCV--RWF--GDFILSKSCENA---------IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred --cchHHHH--HHH--hhheeecccCce---------EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 0000000 000 111111111111 11111100 000 0000111111112234677
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|-++.||.+...| .|.+||++.........+.+...+..|...+||-||..|+..+. ++.|.-||.-
T Consensus 316 d~~~~~la~gnq~g---~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd---d~~Vwrwdrv 383 (385)
T KOG1034|consen 316 DPWQKMLALGNQSG---KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD---DGTVWRWDRV 383 (385)
T ss_pred cHHHHHHhhccCCC---cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC---CCcEEEEEee
Confidence 88899999999988 99999998655432233444555667899999999999999988 9999988853
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=142.79 Aligned_cols=294 Identities=18% Similarity=0.319 Sum_probs=174.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCC-CcEEEEEecCceEEeecccCcc--e-----------ee
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQGAAVWGGANTFN--R-----------LM 249 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~i~iw~~~~~~~--~-----------~~ 249 (712)
.|++...|.++.+++... ..+...-...+..|+|++|-|. ++-||.++..||.||...-+.. + +.
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 467778888998998732 2222222344578999999996 4679999999999997651111 1 11
Q ss_pred ee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 250 RY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 250 ~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
+. .|..|++++|.+||..|++++.+. ..|.|||..+|..+.......+.++ .+.|||
T Consensus 191 ~~pgh~pVtsmqwn~dgt~l~tAS~gs---------ssi~iWdpdtg~~~pL~~~glgg~s-------------lLkwSP 248 (445)
T KOG2139|consen 191 QDPGHNPVTSMQWNEDGTILVTASFGS---------SSIMIWDPDTGQKIPLIPKGLGGFS-------------LLKWSP 248 (445)
T ss_pred eCCCCceeeEEEEcCCCCEEeecccCc---------ceEEEEcCCCCCcccccccCCCcee-------------eEEEcC
Confidence 11 233499999999999999999772 6899999999887655422222221 689999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
||.+|..+. |+..++|+.........-....+.|+..+|+|+|++|++.+. +..+++....+.......
T Consensus 249 -dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s------gsp~lysl~f~~~~~~~~--- 318 (445)
T KOG2139|consen 249 -DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS------GSPRLYSLTFDGEDSVFL--- 318 (445)
T ss_pred -CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc------CCceEEEEeecCCCcccc---
Confidence 999988888 999999965533222222234447999999999999987422 223343333222111000
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC-
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP- 486 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~- 486 (712)
.+.+..- .+.+.++.+-.+......+ .+.+.+++|.|.|.++|+....++
T Consensus 319 ----------~~~~~k~----------------~lliaDL~e~ti~ag~~l~---cgeaq~lawDpsGeyLav~fKg~~~ 369 (445)
T KOG2139|consen 319 ----------RPQSIKR----------------VLLIADLQEVTICAGQRLC---CGEAQCLAWDPSGEYLAVIFKGQSF 369 (445)
T ss_pred ----------Cccccee----------------eeeeccchhhhhhcCcccc---cCccceeeECCCCCEEEEEEcCCch
Confidence 0111100 0122233221111111112 578899999999999999877543
Q ss_pred ----CCeEEEEEeecccccCceeEE--EEeCCCceeEEEEcc---CCCeEEEEeccCCCceEEEEECC
Q 005140 487 ----RPDISFYSMRTAQHAGRVSKL--TTLKGKQANALFWSP---SGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 487 ----~~~v~i~d~~~~~~~~~~~~~--~~~~~~~v~~l~~sp---dg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+..|.+||.+.... +... ..+.+..-..++|+| +|++|.++=. .|.+.-|++.
T Consensus 370 v~~~k~~i~~fdtr~sp~---vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs---TGriq~ypl~ 431 (445)
T KOG2139|consen 370 VLLCKLHISRFDTRKSPP---VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS---TGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhhhcccccCc---eEEEecccccCCCCceEEeeecccCCcEEEEEec---cCceEeeeeE
Confidence 22456666543211 1111 111222334566665 4555555544 5666666554
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=148.65 Aligned_cols=292 Identities=11% Similarity=0.166 Sum_probs=198.4
Q ss_pred eeecCCCeeEEEecCCCC--EEEEEcCCCCCCCcCCCccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcC
Q 005140 249 MRYAHPQVKLIDFSPGEK--YLVTYSSHEPSNPRDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 249 ~~~~~~~v~~i~~Spdg~--~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
.+.....|++++|+|... .+|+|... |+|-+||+.+.+ .+..|..|...+.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~----------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs------------- 238 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKG----------GQVGLWNFGTQEKDKDGVYLFTPHSGPVS------------- 238 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCC----------CcEEEEecCCCCCccCceEEeccCCcccc-------------
Confidence 334455699999999865 66777777 999999995322 3556677766654
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
++.|+|.+...+.+.+ ||+|++-|+++...-..... ....+.++.|+.....+++ ++..+.+.+|+....
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~-------~~~~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF-------GDNVGNFNVIDLRTD 311 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE-------eecccceEEEEeecC
Confidence 6899994334555555 99999999986543222222 2234677888888777776 333334444444332
Q ss_pred c-ceeeeeeeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEeeCCC
Q 005140 400 E-ELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 400 ~-~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
. ......++...++.++++|... +|++++.|.+ ..||+++.-.... ..+....|...|.+..|||.|-
T Consensus 312 ~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T---------~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 312 GSEYENLRLHKKKITSVALNPVCPWFLATASLDQT---------AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred CccchhhhhhhcccceeecCCCCchheeecccCcc---------eeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 2 2333333444666778898765 6778888877 7899998643322 2456668999999999999888
Q ss_pred EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-----CC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 477 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-----GK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
.|++.+.|. .|+|||..--. ....+...+. +. ..-...|.|+-.+++++.+ -..|-|||-..++.
T Consensus 383 tl~TT~~D~---~IRv~dss~~s--a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 383 TLLTTCQDN---EIRVFDSSCIS--AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---PRPIDVFDGNGGQM 454 (498)
T ss_pred ceEeeccCC---ceEEeeccccc--ccCCccceeeccCcccccccchhheeCCCccEEEEecc---CcceeEEcCCCCEE
Confidence 899999998 99999984100 1111222222 11 2345789999999999988 78899999999887
Q ss_pred eeecccc---cee-eEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 550 MATAEHF---MAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 550 ~~~~~~~---~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+...|.. .|. -..|+|-+..+++|+.+ .|.|+||.-.+
T Consensus 455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s----~Gki~vft~k~ 496 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNS----SGKIYVFTNKK 496 (498)
T ss_pred eeeccCccccccccceeecccccceeccCCc----cceEEEEecCC
Confidence 7775553 333 36899998877777764 67788886543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=155.38 Aligned_cols=156 Identities=23% Similarity=0.383 Sum_probs=118.1
Q ss_pred cceeEEECc-CCCEEEEEEcccccccccccccEEEEEEecCCcceeE----EEecCCCCceEEEEEee-CCCEEEEEEcC
Q 005140 411 SDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV----LELDNKNDKIIAFAWEP-KGHRFAVIHGD 484 (712)
Q Consensus 411 ~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~l~~h~~~v~~~~~sp-~g~~l~~~~~d 484 (712)
....++|.| |...|+++.+++. +.||++...+.+... ..++.|...|+++.|+| -.+.|++++.|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~---------i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQ---------INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCce---------EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 455778998 5678999999887 899999876654322 34678999999999999 56788899999
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-eccc---cce
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEH---FMA 558 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~~~---~~v 558 (712)
. +|++||+.++. ....+.+| +|..++|||+|+.+++.+. ||+|++|+..+++.-. .+.. ..-
T Consensus 700 ~---Ti~lWDl~~~~------~~~~l~gHtdqIf~~AWSpdGr~~AtVcK---Dg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 700 S---TIELWDLANAK------LYSRLVGHTDQIFGIAWSPDGRRIATVCK---DGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred c---eeeeeehhhhh------hhheeccCcCceeEEEECCCCcceeeeec---CceEEEeCCCCCCCccccCCCCccCcc
Confidence 8 99999998765 23344444 7999999999999999999 9999999988665432 2211 334
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..+.|--||++|++.+.+ ......+.+|+
T Consensus 768 ARi~wacdgr~viv~Gfd-k~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFD-KSSERQVQMYD 796 (1012)
T ss_pred eeEEEEecCcEEEEeccc-ccchhhhhhhh
Confidence 468899999998887753 11234555554
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-16 Score=151.50 Aligned_cols=245 Identities=13% Similarity=0.220 Sum_probs=164.4
Q ss_pred CCCCceEEEEECCeeEEEecCCC---------CCCCcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcc-
Q 005140 179 EKARDQFVIRSGTDTEVLWNDAR---------HLKPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFN- 246 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~---------~~~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~- 246 (712)
|.....++.....+-+.+|+..+ ...|...+.+|...-..++|++.- -+|++++.++ |.+||+.....
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 33334445555666677888632 223445789999888899999853 3577777777 88999873222
Q ss_pred -----eeeee-cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccCCCcccccCCCCCc
Q 005140 247 -----RLMRY-AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGV 316 (712)
Q Consensus 247 -----~~~~~-~~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~~~~~~~~~~~~~~ 316 (712)
....+ .|. .|..++|+|-. ..+++++.| +.+.|||++ +.+..+...+|...+.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd----------~~L~iwD~R~~~~~~~~~~~ah~~~vn------- 276 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD----------GKLMIWDTRSNTSKPSHSVKAHSAEVN------- 276 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCC----------CeEEEEEcCCCCCCCcccccccCCcee-------
Confidence 11122 244 49999999954 567788888 999999999 4555666677776663
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEE
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~ 393 (712)
+++|+|.++..||+++ |++|.+||+++.. .+.....|.+.|.++.|||... .||+ ++.|+...||.
T Consensus 277 ------~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS-----Sg~D~rl~vWD 345 (422)
T KOG0264|consen 277 ------CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS-----SGTDRRLNVWD 345 (422)
T ss_pred ------EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe-----cccCCcEEEEe
Confidence 7999996777889998 9999999999765 3444556777899999999864 5555 55666655554
Q ss_pred EecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 394 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
+.--..+.. + .-.+.+.|...+.-.||...|..+.|+|
T Consensus 346 ls~ig~eq~----------------~--------------------------eda~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 346 LSRIGEEQS----------------P--------------------------EDAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred ccccccccC----------------h--------------------------hhhccCCcceeEEecCcccccccccCCC
Confidence 432111100 0 0001111212233458999999999999
Q ss_pred CCCEEEE-EEcCCCCCeEEEEEee
Q 005140 474 KGHRFAV-IHGDSPRPDISFYSMR 496 (712)
Q Consensus 474 ~g~~l~~-~~~d~~~~~v~i~d~~ 496 (712)
+..+.++ ++.|+ .+.||.+.
T Consensus 384 ~ePW~I~SvaeDN---~LqIW~~s 404 (422)
T KOG0264|consen 384 NEPWTIASVAEDN---ILQIWQMA 404 (422)
T ss_pred CCCeEEEEecCCc---eEEEeecc
Confidence 8776554 45566 99999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=151.29 Aligned_cols=281 Identities=12% Similarity=0.224 Sum_probs=187.8
Q ss_pred EEEEEecCceEEeecccCcceeeee----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----e
Q 005140 227 YLATVHRQGAAVWGGANTFNRLMRY----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----V 297 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~~~~----~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-----~ 297 (712)
+++..+.+.++|||.. .....-.+ ..+++.++.|+.... |++++.. +...|++|. ..|+ .
T Consensus 5 l~~aS~gd~~kl~D~s-~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~--------gdk~~~~~~-K~g~~~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFS-DLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMA--------GDKVMRIKE-KDGKTPEVPR 73 (673)
T ss_pred eeeeccCCceEEeecc-cccCccccccCCCCCcceeeeccccce-EEEeecC--------CceeEEEec-ccCCCCccce
Confidence 5666677889999987 55444333 234599999998764 5544433 116888997 4554 1
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEE
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
++...+.. .. |+.... ...|+++++ .+.|+|||+....+......|...|+++.++-.+.+||
T Consensus 74 ~~k~~gd~-~~--------------Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 74 VRKLTGDN-AF--------------CVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA 137 (673)
T ss_pred eeccccch-HH--------------HHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE
Confidence 22222221 11 344444 456999999 99999999995555555556778899999999999999
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
. ++.++.+.| ..+.++... ..
T Consensus 138 s-----vs~gGdiii--h~~~t~~~t----------------------------------------------------t~ 158 (673)
T KOG4378|consen 138 S-----VSDGGDIII--HGTKTKQKT----------------------------------------------------TT 158 (673)
T ss_pred E-----eccCCcEEE--EecccCccc----------------------------------------------------cc
Confidence 8 444443332 111111000 00
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEccCC-CeEEEEe
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSG-RFIVLAG 531 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~spdg-~~l~~~~ 531 (712)
+.. +....|.-+.++|..+.++.... +| .|.+||+.... ++... +..+...++|||.. ..|++.+
T Consensus 159 f~~-~sgqsvRll~ys~skr~lL~~asd~G---~VtlwDv~g~s------p~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 159 FTI-DSGQSVRLLRYSPSKRFLLSIASDKG---AVTLWDVQGMS------PIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred eec-CCCCeEEEeecccccceeeEeeccCC---eEEEEeccCCC------cccchhhhccCCcCcceecCCccceEEEec
Confidence 111 11334556888988776666555 56 99999997654 33332 23477889999965 4667777
Q ss_pred ccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--ee--eeecccceeeeE
Q 005140 532 LKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LL--YRTLKDHFFQFL 606 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~~--~~~~~~~i~~~~ 606 (712)
. |..|.+||....+.... .-..+.+.++|+++|.+|+.|+. .|.+..||+.+. .+ ...|...|++++
T Consensus 229 ~---Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s-----~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 229 Y---DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS-----KGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred c---cceEEEeecccccccceeeecCCcceeeecCCceEEEeecC-----CceEEEEecccCCCCceEeeecccceeEEE
Confidence 7 99999999996665544 23467889999999999999999 899999999864 22 234677899999
Q ss_pred EecCC
Q 005140 607 WRPRP 611 (712)
Q Consensus 607 w~p~~ 611 (712)
|.|.+
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 99986
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-15 Score=145.97 Aligned_cols=363 Identities=16% Similarity=0.280 Sum_probs=237.6
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC----------------ceEE
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----------------GAAV 238 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----------------~i~i 238 (712)
...+|.|+ |++......+.+|..+... ....+. | ..|..+.|||.|+||.|-+.. .+.+
T Consensus 38 ~~~SP~G~--~l~~~~~~~V~~~~g~~~~-~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 38 VSESPLGT--YLFSEHAAGVECWGGPSKA-KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred eeecCcch--heehhhccceEEccccchh-heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 34566666 4455556667799885444 222222 2 467889999999999996633 3569
Q ss_pred eecccCcceeeeecCCC-----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 239 WGGANTFNRLMRYAHPQ-----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 239 w~~~~~~~~~~~~~~~~-----v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
||.. ++..+..+.... -.-+.||-+.+|+|-...+ .+.|+++ ++... ....+...
T Consensus 113 wd~~-sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-----------sl~i~e~-t~n~~-~~p~~~lr------ 172 (561)
T COG5354 113 WDIA-SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-----------SLYIHEI-TDNIE-EHPFKNLR------ 172 (561)
T ss_pred Eecc-CceeEeeccccCCcccccceeeeeecchhhhhhccC-----------eEEEEec-CCccc-cCchhhcc------
Confidence 9999 888888875332 3378999999999877655 6899997 44321 11111110
Q ss_pred CCcCCCCcCeEEecCC-CCCEEEEec------CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 314 GGVAGVSWPVFRWGGG-KDKYFAKLG------KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~-dg~~la~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
+.|+ ..+.|||. ++.-||+.. ...+++|.++.+..+..+.+-.-.-..+.|.+.|++|++.+......+
T Consensus 173 --~~gi--~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 173 --PVGI--LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred --ccce--eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 1121 16888982 234566554 678999999977777655543333456899999999988764432122
Q ss_pred ----CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC
Q 005140 387 ----QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 387 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
+...++++++..+..-... ........+.|+|.++.+++.+.-... .+.+|+++.+ +.+...
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa-------~~s~~~lr~N------l~~~~P 314 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPA-------SVSVFDLRGN------LRFYFP 314 (561)
T ss_pred cceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEeccccc-------ceeecccccc------eEEecC
Confidence 2245777777643322221 334556678999999988887643221 1345555432 112122
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccC---CCceE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG---FNGQL 539 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~---~dg~v 539 (712)
...-+.+.|||.++++++++-+....++.+|+... +...+..+.+....-+.|||||.++.++..+. .|..+
T Consensus 315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~-----rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG-----RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred CcccccccccCcccEEEEecCCccccceEEeccCC-----ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcce
Confidence 44556688999999999988765555899999743 34456566666677789999999998876432 58889
Q ss_pred EEEECCcceeeeeccccceeeEEECCCCCEEEEEEcc-ceeccccEEEEEecC
Q 005140 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTS-VHEMENGFNIWSFNG 591 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~-~~~~d~~v~iw~~~g 591 (712)
.||++...... ..+.+.|.|.|++..+.+.. .|...++.++.++.|
T Consensus 390 ~l~~v~g~~~f------el~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~G 436 (561)
T COG5354 390 KLWDVYGAKVF------ELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAG 436 (561)
T ss_pred EEEEecCchhh------hhhhccccCCcccceeeccCCCCccccccccccccc
Confidence 99998844332 67789999999998888775 444455566665544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-15 Score=158.29 Aligned_cols=241 Identities=13% Similarity=0.192 Sum_probs=152.1
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.+||...+. .+.+..+..... .++||| ||+.|+..+ +..|.+|++.+++..... ...
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~-------------~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~ 242 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLM-------------SPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP 242 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCcee-------------eeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC
Confidence 579999975443 333433332221 689999 999998764 457889998876532111 111
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+..+.|||||+.|++.. ..++...||++++.+..
T Consensus 243 ~~~~~~~~SPDG~~La~~~----~~~g~~~I~~~d~~tg~---------------------------------------- 278 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFAL----SKTGSLNLYVMDLASGQ---------------------------------------- 278 (429)
T ss_pred CCcCCeEECCCCCEEEEEE----cCCCCcEEEEEECCCCC----------------------------------------
Confidence 2345678888888887631 12333345555443211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
. ..+..+...+..++|+|||+.|++++..+....|+++++.++. ...+ +..+.....+.|
T Consensus 279 -------------~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~l-t~~~~~~~~~~~ 338 (429)
T PRK03629 279 -------------I--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRI-TWEGSQNQDADV 338 (429)
T ss_pred -------------E--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEe-ecCCCCccCEEE
Confidence 0 1111223456678999999999988875433355555664432 1222 223344567999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccc---cEEEEEecCceeeee
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMEN---GFNIWSFNGKLLYRT 597 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~---~v~iw~~~g~~~~~~ 597 (712)
||||++|++.+.......|++||+.+++..............|||||++|++++. ++ .+.+++++|......
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~-----~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSS-----QGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEc-----CCCceEEEEEECCCCCeEEC
Confidence 9999999887653224578899998776443222233457899999999999998 44 367788888766555
Q ss_pred --cccceeeeEEecC
Q 005140 598 --LKDHFFQFLWRPR 610 (712)
Q Consensus 598 --~~~~i~~~~w~p~ 610 (712)
+.+.+...+|+|.
T Consensus 414 ~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 414 PATDGQVKFPAWSPY 428 (429)
T ss_pred ccCCCCcCCcccCCC
Confidence 4567889999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=153.94 Aligned_cols=254 Identities=13% Similarity=0.169 Sum_probs=191.8
Q ss_pred EEEEECCeeEEEecCCC-CCCCcccccCCCcccce-EEEcC-CCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeE
Q 005140 185 FVIRSGTDTEVLWNDAR-HLKPEPVYKRSYWTESF-VQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKL 258 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~v~~-v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~ 258 (712)
.+..+.++++.+|.-.. ..-....+.+|..-+.+ +++-+ ++-.|++|+.|. +.+|... +..++..+ .|. .|.+
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS-QAEPLYTLKGHKSNVCS 106 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-CCCchhhhhccccceee
Confidence 33444588888998722 22333456777766655 77775 555699999999 7799998 77777666 355 5999
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
++.-.++. |++||.| .++++|- .+++...+.+|...+ |. +..-| .+. +++++
T Consensus 107 ls~~~~~~-~iSgSWD----------~TakvW~--~~~l~~~l~gH~asV------------WA-v~~l~-e~~-~vTgs 158 (745)
T KOG0301|consen 107 LSIGEDGT-LISGSWD----------STAKVWR--IGELVYSLQGHTASV------------WA-VASLP-ENT-YVTGS 158 (745)
T ss_pred eecCCcCc-eEecccc----------cceEEec--chhhhcccCCcchhe------------ee-eeecC-CCc-EEecc
Confidence 99888888 9999999 9999997 577778899998887 84 66667 664 45555
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|.+|++|.- ++.+.....|.+.|+.+++-|++.+|. ++.|+.++.|
T Consensus 159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS------csNDg~Ir~w------------------------- 205 (745)
T KOG0301|consen 159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS------CSNDGSIRLW------------------------- 205 (745)
T ss_pred CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEe------ecCCceEEEE-------------------------
Confidence 999999986 567777788999999999999888777 4455555533
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
+-+|..| .++.+|...+.+++..+++..+++++.|+ +++||+..
T Consensus 206 ~~~ge~l--------------------------------~~~~ghtn~vYsis~~~~~~~Ivs~gEDr---tlriW~~~- 249 (745)
T KOG0301|consen 206 DLDGEVL--------------------------------LEMHGHTNFVYSISMALSDGLIVSTGEDR---TLRIWKKD- 249 (745)
T ss_pred eccCcee--------------------------------eeeeccceEEEEEEecCCCCeEEEecCCc---eEEEeecC-
Confidence 2223222 34558888999999888899999999999 99999974
Q ss_pred ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 498 AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|....++++..+.++.+-++|..++.+ . ||.|+||..+
T Consensus 250 -----e~~q~I~lPttsiWsa~~L~NgDIvvg~-S---DG~VrVfT~~ 288 (745)
T KOG0301|consen 250 -----ECVQVITLPTTSIWSAKVLLNGDIVVGG-S---DGRVRVFTVD 288 (745)
T ss_pred -----ceEEEEecCccceEEEEEeeCCCEEEec-c---CceEEEEEec
Confidence 3445666777789999999999765544 4 9999999876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-14 Score=144.12 Aligned_cols=274 Identities=11% Similarity=0.055 Sum_probs=167.3
Q ss_pred eEEEEECCeeEEEecCCCCCC--CcccccCCCcccceEEEcCCCcEEEEEec-Cc-eEEeecccCcc--eeeeecCC-Ce
Q 005140 184 QFVIRSGTDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFN--RLMRYAHP-QV 256 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~--~~~~~~~~-~v 256 (712)
.|++...++.+.+|+....+. ....++ +......+++||+|++|+.++. ++ |.+|+...++. .+...... ..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 356666678888998842222 222332 2345678999999999877754 33 78898862222 23333333 47
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-Cc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
..++|+|+|++|++++... +.|.+|++.+ |. .+..+.+..... .++++| +++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~---------~~v~v~~~~~~g~~~~~~~~~~~~~~~~--------------~~~~~p-~g~ 138 (330)
T PRK11028 83 THISTDHQGRFLFSASYNA---------NCVSVSPLDKDGIPVAPIQIIEGLEGCH--------------SANIDP-DNR 138 (330)
T ss_pred eEEEECCCCCEEEEEEcCC---------CeEEEEEECCCCCCCCceeeccCCCccc--------------EeEeCC-CCC
Confidence 7899999999999887531 7899999863 32 222222222222 578999 999
Q ss_pred EEEEec--CCeEEEEEcCCceeccc---c--cc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ce
Q 005140 333 YFAKLG--KNMISVYETESFTLIDK---K--SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--EL 402 (712)
Q Consensus 333 ~la~~~--d~~i~iwd~~~~~~~~~---~--~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~ 402 (712)
+++.+. ++.|.+|++.+...+.. . .. ...+...+.|+|+|+++++. ...++.+.+|.++..+.. .+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~----~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV----NELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE----ecCCCEEEEEEEeCCCCCEEEE
Confidence 886665 79999999986432211 0 11 12346789999999998772 113455555555432222 12
Q ss_pred eeeeeee------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC
Q 005140 403 RQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 403 ~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
....... .....+.++|+|++++++.... ..+.+|++...+.....+....-......++++|+|+
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~--------~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~ 286 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA--------SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK 286 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCC--------CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence 1111110 1122467899999999874321 1278888876543222121101023456789999999
Q ss_pred EEEEEEc-CCCCCeEEEEEeec
Q 005140 477 RFAVIHG-DSPRPDISFYSMRT 497 (712)
Q Consensus 477 ~l~~~~~-d~~~~~v~i~d~~~ 497 (712)
+|+++.. ++ +|.+|+++.
T Consensus 287 ~l~va~~~~~---~v~v~~~~~ 305 (330)
T PRK11028 287 YLIAAGQKSH---HISVYEIDG 305 (330)
T ss_pred EEEEEEccCC---cEEEEEEcC
Confidence 9999876 45 899999854
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-14 Score=145.55 Aligned_cols=271 Identities=12% Similarity=0.160 Sum_probs=163.4
Q ss_pred EecCceEEeecccCc--ceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCce--eeeccCC
Q 005140 231 VHRQGAAVWGGANTF--NRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKV--MRDFKGS 304 (712)
Q Consensus 231 ~~~~~i~iw~~~~~~--~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-~g~~--~~~~~~~ 304 (712)
....+|.+|++.+++ ..+.++.+ .....+++||++++|++++... +.|.+|++. +|.. +......
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~---------~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE---------FRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC---------CcEEEEEECCCCceEEeeeecCC
Confidence 334449999986223 34455544 3488999999999997765431 678899986 3432 2222211
Q ss_pred CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceeccc-cc--ccccCeeeEEECCCCCeEEEEe
Q 005140 305 ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDK-KS--LKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~-~~--~~~~~v~~~~~sp~~~~la~~~ 379 (712)
.... .+.++| ++++|++++ ++.|.+|++.+...+.. .. ........++++|+++++++.
T Consensus 80 ~~p~--------------~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~- 143 (330)
T PRK11028 80 GSPT--------------HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVP- 143 (330)
T ss_pred CCce--------------EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEe-
Confidence 1111 589999 999888777 89999999874322111 10 112345667788888777542
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
..+...|++|++.....+.... ......
T Consensus 144 -----~~~~~~v~v~d~~~~g~l~~~~-----------------------------------------------~~~~~~ 171 (330)
T PRK11028 144 -----CLKEDRIRLFTLSDDGHLVAQE-----------------------------------------------PAEVTT 171 (330)
T ss_pred -----eCCCCEEEEEEECCCCcccccC-----------------------------------------------CCceec
Confidence 1222334444432211100000 000011
Q ss_pred cCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC---CC-----ceeEEEEccCCCeEEEE
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---GK-----QANALFWSPSGRFIVLA 530 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~-----~v~~l~~spdg~~l~~~ 530 (712)
.. ......++|+|+|++++++.. ++ .|.+|+++...+ ....+..+. .. ....+.++|+|++++++
T Consensus 172 ~~-g~~p~~~~~~pdg~~lyv~~~~~~---~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 172 VE-GAGPRHMVFHPNQQYAYCVNELNS---SVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CC-CCCCceEEECCCCCEEEEEecCCC---EEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 01 233567899999999988876 45 899999974321 122333332 11 12358899999999998
Q ss_pred eccCCCceEEEEECCcce----eeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 531 GLKGFNGQLEFYNVDELE----TMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~----~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.. .++.|.+|+++... .+.... ......+.++|||++|+++... ++.|.+|+++
T Consensus 246 ~~--~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 246 DR--TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred cC--CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc----CCcEEEEEEc
Confidence 53 26899999985321 222211 1345689999999999988753 7899999885
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=151.84 Aligned_cols=281 Identities=16% Similarity=0.216 Sum_probs=197.0
Q ss_pred EEEecCC---CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------eeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 258 LIDFSPG---EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 258 ~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
...|++. ...|+.+..+ |.|.++|..... .++.+..|...+ + .+.|-|
T Consensus 54 ~~sFs~~~n~eHiLavadE~----------G~i~l~dt~~~~fr~ee~~lk~~~aH~nAi------------f-Dl~wap 110 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADED----------GGIILFDTKSIVFRLEERQLKKPLAHKNAI------------F-DLKWAP 110 (720)
T ss_pred cccccCCCCccceEEEecCC----------Cceeeecchhhhcchhhhhhccccccccee------------E-eeccCC
Confidence 4566653 3467777777 899999975432 235556666655 2 589999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceeccc--ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce---
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDK--KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL--- 402 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~--- 402 (712)
....|++.+ |.++++||+.+..+... ...|...|.+++|.|.+..+.+. |+.|+.+.||.........+
T Consensus 111 -ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t----GgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 111 -GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT----GGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred -CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee----ccCCCcEEEEEEeccchhhHHHH
Confidence 777888877 99999999998888776 55688889999999998765543 78899988888776541100
Q ss_pred ----------------------eeeeeeeecc---eeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcc---
Q 005140 403 ----------------------RQKNLFSVSD---CKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIP--- 453 (712)
Q Consensus 403 ----------------------~~~~~~~~~~---~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~--- 453 (712)
+........+ +.+.+..|...|++++. |+. +++|+|+.....
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~---------iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADST---------IKVWDLRKNYTAYRQ 256 (720)
T ss_pred hhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcc---------eEEEeeccccccccc
Confidence 0000011111 22345566777777655 444 899999864332
Q ss_pred --eeEEEecCC---CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCcee----EEEEccCC
Q 005140 454 --IEVLELDNK---NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQAN----ALFWSPSG 524 (712)
Q Consensus 454 --~~~~~l~~h---~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~----~l~~spdg 524 (712)
.....++.| ...+.++.....|.+|.+...|+ .|++|++.+-... ++..+.++.+. .-..|||+
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~---sIy~ynm~s~s~s----P~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN---SIYFYNMRSLSIS----PVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC---cEEEEeccccCcC----chhhccCcccceeeeeeecCCCC
Confidence 222233333 34577788878889998888898 9999999764433 55555555433 34579999
Q ss_pred CeEEEEeccCCCceEEEEECCccee---eeeccccceeeEEECCCCC-EEEEEEccceeccccEEEEEec
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.+|++|+. |...++|.+.+.+. +..+|...|++++|.|.-. -+++++. |..++||++.
T Consensus 330 ~~l~SgSs---d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd-----D~~~kiW~l~ 391 (720)
T KOG0321|consen 330 CSLLSGSS---DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSD-----DFRVKIWRLS 391 (720)
T ss_pred ceEeccCC---CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeecc-----CcceEEEecc
Confidence 99999998 99999999986654 3457889999999998543 5777888 9999999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-17 Score=165.53 Aligned_cols=214 Identities=14% Similarity=0.225 Sum_probs=175.1
Q ss_pred eEEEEECCeeEE-EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEE
Q 005140 184 QFVIRSGTDTEV-LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLI 259 (712)
Q Consensus 184 ~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i 259 (712)
.+++.+|....+ +|.. .+...+..|.+|...|.|+.|+++..+|+.|+.+| |++||++ ..+.+.++ +...+.++
T Consensus 41 r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVRTLTGHLLNITSV 118 (825)
T ss_pred eeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhhhhhccccCccee
Confidence 456666665555 9998 56667777999999999999999999999999998 8899999 77766655 34469999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
.|+|-|.|.|+|+.| +.+.+||++...+...+.+|...+. +++|+| +|++++.++
T Consensus 119 ~f~P~~~~~a~gStd----------td~~iwD~Rk~Gc~~~~~s~~~vv~-------------~l~lsP-~Gr~v~~g~e 174 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTD----------TDLKIWDIRKKGCSHTYKSHTRVVD-------------VLRLSP-DGRWVASGGE 174 (825)
T ss_pred eeccceEEecccccc----------ccceehhhhccCceeeecCCcceeE-------------EEeecC-CCceeeccCC
Confidence 999999999999999 8899999998889999999876653 789999 999999999
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
|++++|||+..|+++..+..|...+..+.|+|..-.++. |+.+..+++|. +.+...+...........+..|+
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~-----Gs~d~tv~f~d--letfe~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP-----GSSDRTVRFWD--LETFEVISSGKPETDGVRSLAFN 247 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhcc-----CCCCceeeeec--cceeEEeeccCCccCCceeeeec
Confidence 799999999999999888788888999999999888888 77777766554 44444444444345555667889
Q ss_pred cCCCEEEEEEcc
Q 005140 419 SSGDYLAVKVDR 430 (712)
Q Consensus 419 ~~g~~l~~~~~~ 430 (712)
|+|..++.+-..
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 998887776543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=156.93 Aligned_cols=236 Identities=14% Similarity=0.208 Sum_probs=155.9
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
..|.+||....... ....+...+..++|||+|+.|++... .++...|++|++.+.+...... .......+.|+|
T Consensus 184 ~~i~i~d~dg~~~~-~lt~~~~~v~~p~wSPDG~~la~~s~----~~~~~~i~i~dl~tg~~~~l~~-~~g~~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQF-IVNRSSQPLMSPAWSPDGSKLAYVSF----ENKKSQLVVHDLRSGARKVVAS-FRGHNGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCce-EeccCCCccccceEcCCCCEEEEEEe----cCCCcEEEEEeCCCCceEEEec-CCCccCceeECC
Confidence 58999998754422 22233445889999999999987321 2344578888886654222111 122233578999
Q ss_pred CCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeec
Q 005140 420 SGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRT 497 (712)
Q Consensus 420 ~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~ 497 (712)
+|+.|++... ++. ..||.++..+... ..+..+...+.+++|+|||+.|++++. ++ ...||.++.
T Consensus 258 DG~~La~~~~~~g~---------~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~ 323 (429)
T PRK01742 258 DGSRLAFASSKDGV---------LNIYVMGANGGTP--SQLTSGAGNNTEPSWSPDGQSILFTSDRSG---SPQVYRMSA 323 (429)
T ss_pred CCCEEEEEEecCCc---------EEEEEEECCCCCe--EeeccCCCCcCCEEECCCCCEEEEEECCCC---CceEEEEEC
Confidence 9999998764 332 4677666543333 345556777889999999999988875 34 567777654
Q ss_pred ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccc
Q 005140 498 AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSV 577 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~ 577 (712)
.... ...+ .... ..+.|||||++|++++. + .+.+||+.+++............+.|+|||++|++++.
T Consensus 324 ~~~~--~~~l---~~~~-~~~~~SpDG~~ia~~~~---~-~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~-- 391 (429)
T PRK01742 324 SGGG--ASLV---GGRG-YSAQISADGKTLVMING---D-NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST-- 391 (429)
T ss_pred CCCC--eEEe---cCCC-CCccCCCCCCEEEEEcC---C-CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc--
Confidence 3221 1122 2112 45789999999998874 4 46669998776443222223457899999999999998
Q ss_pred eeccccEEEEEe---cCceeeee--cccceeeeEEecC
Q 005140 578 HEMENGFNIWSF---NGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 578 ~~~d~~v~iw~~---~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
++...+|.+ +|...... +.+.+..++|+|.
T Consensus 392 ---~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 392 ---QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ---CCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 777777654 57766555 4467889999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-14 Score=152.36 Aligned_cols=249 Identities=13% Similarity=0.194 Sum_probs=158.2
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
.|.++|...... .....+...+...+|||||+.|++... .++...|+++++.+..... ...+........|+|+
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~----~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSY----ANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEe----cCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCC
Confidence 678888764432 223334456899999999999988532 2344688899987654322 1112233445689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.|++...... ...||.++..+... ..+..+.....+.+|+|||++|++.+.......|+++++.++..
T Consensus 257 G~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 257 GRKVVMSLSQGG--------NTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CCEEEEEEecCC--------CceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 999887654321 14566665444433 33545566677899999999999988654444788888755432
Q ss_pred cCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEcccee-
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHE- 579 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~- 579 (712)
..+.. .......+.|||||++|++.........|.+||+.++..........+..+.|+|||++|+..+...-.
T Consensus 327 ----~~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 327 ----RRISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ----EEeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCC
Confidence 23322 233456789999999999876532235788899875443322223356789999999999887762000
Q ss_pred ccccEEEEEecCceeeeec-ccceeeeEEecC
Q 005140 580 MENGFNIWSFNGKLLYRTL-KDHFFQFLWRPR 610 (712)
Q Consensus 580 ~d~~v~iw~~~g~~~~~~~-~~~i~~~~w~p~ 610 (712)
....+.++++.|....... ...+...+|+|.
T Consensus 402 ~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 402 GAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 0025677788776554432 234678889875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-13 Score=146.43 Aligned_cols=359 Identities=18% Similarity=0.313 Sum_probs=249.2
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc-eeeeec--CC-CeeEEEe-cCCCC-EEEEEcC-CCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-RLMRYA--HP-QVKLIDF-SPGEK-YLVTYSS-HEPSNP 279 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-~~~~~~--~~-~v~~i~~-Spdg~-~l~t~s~-d~~~~~ 279 (712)
.+..|...+.++.|++.+..++.++.++ +.+|+.. ... .+..+. +. .+..+.+ ++++. +++..+. +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLD-NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD----- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcC-CCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCC-----
Confidence 4568888999999999999999999777 8899998 443 444443 22 4777777 88888 5555444 6
Q ss_pred cCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccc
Q 005140 280 RDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKK 356 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~ 356 (712)
+.+.+|+... ......+..|...+. .+.|+| ++.+++.++ ++.+.+|++..+..+...
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 134 -----GTVKLWDLSTPGKLIRTLEGHSESVT-------------SLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred -----ccEEEEEecCCCeEEEEEecCcccEE-------------EEEECC-CCCEEEecCCCCCceEEEEcCCCceEEee
Confidence 7899999877 678888888877662 589999 998777776 899999999986666555
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee-eeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR-QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
..|...|.+++|+|++..++.. ++.++.+++| +......+. ....+.... ...|++++.+++++..++.
T Consensus 195 ~~~~~~v~~~~~~~~~~~~~~~----~~~d~~i~~w--d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~--- 264 (466)
T COG2319 195 AGHTDPVSSLAFSPDGGLLIAS----GSSDGTIRLW--DLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT--- 264 (466)
T ss_pred ccCCCceEEEEEcCCcceEEEE----ecCCCcEEEE--ECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc---
Confidence 5677889999999999833331 3577777755 555444433 222222221 1168999988887777766
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-EeCCCc
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLKGKQ 514 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~ 514 (712)
+.+|++.......... .+|...+.++.|+|++..+++++.++ .+.+|++...... .... ......
T Consensus 265 ------~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~---~~~~~~~~~~~ 330 (466)
T COG2319 265 ------IRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGSSDG---TVRLWDLETGKLL---SSLTLKGHEGP 330 (466)
T ss_pred ------EEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCEEEEeeCCC---cEEEEEcCCCceE---EEeeecccCCc
Confidence 7888887655422222 57889999999999999999877775 6999987654321 1111 112224
Q ss_pred eeEEEEccCCCeEEEE-eccCCCceEEEEECCcceeeeecccc-ceeeEEECCCCCEEEE-EEccceeccccEEEEEecC
Q 005140 515 ANALFWSPSGRFIVLA-GLKGFNGQLEFYNVDELETMATAEHF-MATDVEWDPTGRYVAT-AVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 515 v~~l~~spdg~~l~~~-~~~~~dg~v~iwd~~~~~~~~~~~~~-~v~~~~~spdg~~l~t-~s~~~~~~d~~v~iw~~~g 591 (712)
+..+.|++++..++.+ .. ++.+.+|++............ .+..+.+++ ...++. +.. ++.+.+|+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~ 401 (466)
T COG2319 331 VSSLSFSPDGSLLVSGGSD---DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGST-----DGTVRLWDLST 401 (466)
T ss_pred eEEEEECCCCCEEEEeecC---CCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecC-----CCceEEEeccc
Confidence 7888884343566666 34 788999999876633332222 278999999 633333 455 89999999885
Q ss_pred ceeeee--cc-cceeeeEEecCCCCCCChhhHHHHH
Q 005140 592 KLLYRT--LK-DHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 592 ~~~~~~--~~-~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
...... .. ..+....+++++..++++..+..++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
T COG2319 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437 (466)
T ss_pred CeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEE
Confidence 443322 22 6788889999988887755555443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-14 Score=150.37 Aligned_cols=324 Identities=13% Similarity=0.195 Sum_probs=204.9
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeee----cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY----AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~----~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
-.++.+++.|.+.+.....++.+|......+..... +|. .+++.++||+++++|++..+ |.|.+|
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~d----------GrI~vw 232 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSD----------GRILVW 232 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccC----------CcEEEE
Confidence 467999999999999999999999887222222211 343 38999999999999999999 999999
Q ss_pred EccC--C--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-cCee
Q 005140 291 DVRT--G--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-ENVM 364 (712)
Q Consensus 291 d~~~--g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~ 364 (712)
.--. + ...+.+.-|...+. ++.||+ +|.+|.+|+ .+.+.+|.+.+++. +..... ..|.
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~-------------~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~ 296 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVN-------------SLSFSS-DGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPIL 296 (792)
T ss_pred eccccccccccceEEEecccccc-------------eeEEec-CCceEeecccceEEEEEeecCCCc--ccccccCCeeE
Confidence 7322 1 13455666666654 799999 999999999 99999999998762 222222 3589
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEE-ecCCccceeeeeee--------eecceeEEECcCCCEEEEEEccccccc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLV-QIPSKEELRQKNLF--------SVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~--------~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.+.+|||+...++ ...|+.+.+... ++.....+...... ..-...+..+|.-+.++.....+.
T Consensus 297 ~i~vS~ds~~~sl-----~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~--- 368 (792)
T KOG1963|consen 297 HIVVSPDSDLYSL-----VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH--- 368 (792)
T ss_pred EEEEcCCCCeEEE-----EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce---
Confidence 9999999998887 335555544333 22222222211111 111122345664444444444333
Q ss_pred ccccccEEEEEEecCCcceeE--EEec------CCCCceEEEEEeeCCCEEEEEEc--------CCCCCeEEEEEeeccc
Q 005140 436 KSTYTGFELFRIKERDIPIEV--LELD------NKNDKIIAFAWEPKGHRFAVIHG--------DSPRPDISFYSMRTAQ 499 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~--~~l~------~h~~~v~~~~~sp~g~~l~~~~~--------d~~~~~v~i~d~~~~~ 499 (712)
+++|++.....-... .... .+...+++++.+-.|.++++.-. ++ ...+++|-.....
T Consensus 369 ------vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~-e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 369 ------VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG-EVSLKFWQYNPNS 441 (792)
T ss_pred ------EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc-eEEEEEEEEcCCc
Confidence 566665433211110 0111 11234677777888999988753 22 2368899876543
Q ss_pred ccCceeEEEEeC-CC--c-eeEEEEccCCC-eEEEEeccCCCceEEEEECCc------------ceeeeeccccceeeEE
Q 005140 500 HAGRVSKLTTLK-GK--Q-ANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDE------------LETMATAEHFMATDVE 562 (712)
Q Consensus 500 ~~~~~~~~~~~~-~~--~-v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~------------~~~~~~~~~~~v~~~~ 562 (712)
.. +.+...+. .| . +..+..+|... .+++++. ||.++||-+.. ...+...|..+++.++
T Consensus 442 kt--~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~---dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 442 KT--FILNTKINNPHGNAFVATIFLNPTRSVRCVTASV---DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred ce--eEEEEEEecCCCceeEEEEEecCcccceeEEecc---CCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 32 33333332 22 2 23334444433 7888888 99999998842 2233346678999999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
||.||..|+.+. ++.|.|||+..
T Consensus 517 fs~dGslla~s~------~~~Itiwd~~~ 539 (792)
T KOG1963|consen 517 FSQDGSLLAVSF------DDTITIWDYDT 539 (792)
T ss_pred hcCCCcEEEEec------CCEEEEecCCC
Confidence 999997655554 58999999875
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-14 Score=142.71 Aligned_cols=232 Identities=16% Similarity=0.232 Sum_probs=166.4
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCC
Q 005140 146 DDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLG 225 (712)
Q Consensus 146 ~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg 225 (712)
.+.....+.|+.+.|+...++.. .. .-..+.+-|++.++|+...+-+- .++.+.....|...+.|-.|||||
T Consensus 45 ~~s~~~~~~p~df~pt~~h~~~r-s~-----~~g~~~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dG 116 (737)
T KOG1524|consen 45 RDSVEVAKLPDDFVPTDMHLGGR-SS-----GGGKGSDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDG 116 (737)
T ss_pred chhhhhhhCCcccCCcccccccc-cc-----CCCCCcceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCC
Confidence 34455667888888887664422 11 11346788999999998887765 566777889999999999999999
Q ss_pred cEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC
Q 005140 226 TYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG 303 (712)
Q Consensus 226 ~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~ 303 (712)
.-|+|++.|| |++|.-. ...+-.-.+ ...|.|++|.|+...++.+..+ ++.|=-+.-...+-..+.
T Consensus 117 tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-----------h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-----------HISIKPLAANSKIIRWRA 184 (737)
T ss_pred ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCC-----------eEEEeecccccceeEEec
Confidence 9999999999 7799987 333222222 3359999999999888887766 577767766666777888
Q ss_pred CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecC
Q 005140 304 SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPEL 382 (712)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~ 382 (712)
|.+.+. ++.|++ ..+++++++ |-..+|||... ..+.....|.-.|++++|+|+ +.++++
T Consensus 185 HDGiiL-------------~~~W~~-~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~---- 244 (737)
T KOG1524|consen 185 HDGLVL-------------SLSWST-QSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLW---- 244 (737)
T ss_pred cCcEEE-------------EeecCc-cccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeee----
Confidence 887764 789999 999999999 99999999874 344444566677999999999 555542
Q ss_pred CCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 383 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 383 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.-+..+ + ......+...++||+||..+++++..+.
T Consensus 245 --S~nt~R---~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 245 --SYNTAR---F----------SSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred --eeeeee---e----------cCCCccceEEEEEcCCCceeeccccCce
Confidence 112222 1 1112234455677888777777666543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-14 Score=141.22 Aligned_cols=341 Identities=15% Similarity=0.245 Sum_probs=222.5
Q ss_pred EEEEEecCceEEeecccCcceeeeecCC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc
Q 005140 227 YLATVHRQGAAVWGGANTFNRLMRYAHP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 302 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~~~~~~~----~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~ 302 (712)
.++.-+..++.+|++.+.......+.+. .+...++|++|+++|.+..+ .++|++..++..+.+..
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~-----------~v~i~~~~~~~~~lt~~ 72 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQ-----------VVKVFEIATLKVVLCVE 72 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCC-----------eEEEEEccCCcEEEEec
Confidence 3555566778899988555555566542 26789999999999988776 79999988885444443
Q ss_pred CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec------C-----CeEEEEEcCCceecccccccccCeeeEEECCC
Q 005140 303 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------K-----NMISVYETESFTLIDKKSLKVENVMDFSWSPT 371 (712)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~------d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (712)
.. ... .+.||| -|.||.+.. + -.+.+|++.++............-.+..|++|
T Consensus 73 ~~-~~~--------------~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~d 136 (566)
T KOG2315|consen 73 LK-KTY--------------DLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSID 136 (566)
T ss_pred cc-eee--------------eeeecc-cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccc
Confidence 33 222 689999 999997652 2 34779999985444333334443468899998
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCC--CEEEEEEcccccccccccccEEEEEEec
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG--DYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
..+.|. .....+.+|++...+.+. ..++......+..||.+ .++|+-..... .....++||.+..
T Consensus 137 Esl~ar--------lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k----GaPa~vri~~~~~ 203 (566)
T KOG2315|consen 137 ESLAAR--------LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKK----GAPASVRIYKYPE 203 (566)
T ss_pred hhhhhh--------hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCC----CCCcEEEEecccc
Confidence 776664 223346667766644322 22233333444566654 46666544321 2234478888763
Q ss_pred CC--cceeEEEecCCCCceEEEEEeeCCCEEEEE-Ec--CC------CCCeEEEEEeecccccCceeEEEEeCCCceeEE
Q 005140 450 RD--IPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HG--DS------PRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 518 (712)
Q Consensus 450 ~~--~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~--d~------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l 518 (712)
.+ .++...++ ....-..+.|++-|.-|++. +. |. +..++++++++... ..+.-...++|.++
T Consensus 204 ~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-----~~V~L~k~GPVhdv 276 (566)
T KOG2315|consen 204 EGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-----VSVPLLKEGPVHDV 276 (566)
T ss_pred ccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-----EEEecCCCCCceEE
Confidence 22 22222222 12334468899877754433 32 22 12368888876211 12333336799999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeee
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT 597 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~ 597 (712)
.|+|+|+-++++- |.+-..+.|||++ +..+.....++-+++-|+|.|++|+.++-. ...|.+-|||+.. +++.+.
T Consensus 277 ~W~~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFG--NL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 277 TWSPSGREFAVVY-GFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFG--NLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EECCCCCEEEEEE-ecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecC--CCCCceEEEeccchhhcccc
Confidence 9999998766553 4468899999999 677777777788899999999999998874 1258899999875 455555
Q ss_pred cccceeeeEEecCCCCCCChh
Q 005140 598 LKDHFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 598 ~~~~i~~~~w~p~~~~l~s~~ 618 (712)
....-+-+.|+|+|.+++|+.
T Consensus 353 ~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 353 KAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ccCCceEEEEcCCCcEEEEEe
Confidence 556677899999999999875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=144.58 Aligned_cols=200 Identities=16% Similarity=0.316 Sum_probs=141.4
Q ss_pred cceeeeeeeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHR 477 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~ 477 (712)
+++...+.+......+.|||--. .|+++... ..+.+|......-.+....+.+|...|..++|||. ...
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~---------~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~v 272 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV---------KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGV 272 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccc---------cceEeeeeccCceeecCccccccccchhhhccCCccCce
Confidence 34555555666677888998322 13332222 23788888776666666778899999999999995 568
Q ss_pred EEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc---eeee--e
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL---ETMA--T 552 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~---~~~~--~ 552 (712)
|++++.|+ +|+|||++.+... ......-++..|+.+.|+-+-.+|++|+. ||++.|||++.. +.++ +
T Consensus 273 faScS~Dg---sIrIWDiRs~~~~--~~~~~kAh~sDVNVISWnr~~~lLasG~D---dGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 273 FASCSCDG---SIRIWDIRSGPKK--AAVSTKAHNSDVNVISWNRREPLLASGGD---DGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred EEeeecCc---eEEEEEecCCCcc--ceeEeeccCCceeeEEccCCcceeeecCC---CceEEEEEhhhccCCCcceeEE
Confidence 89999999 9999999886432 11222334557999999999889999987 999999999853 3343 4
Q ss_pred ccccceeeEEECCCCC-EEEEEEccceeccccEEEEEecCc-------------------eeeeecc--cceeeeEEecC
Q 005140 553 AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGK-------------------LLYRTLK--DHFFQFLWRPR 610 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~-------------------~~~~~~~--~~i~~~~w~p~ 610 (712)
.|..+|+++.|+|... .|++++. |+.|.|||+.-. +|.-.|. ..+..+.|+++
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~-----D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGE-----DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ 419 (440)
T ss_pred eccCCeeEEEeccccCceEEeccC-----CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence 7889999999999655 5556666 999999998521 0111232 46778899988
Q ss_pred CC-CCCChhhHH
Q 005140 611 PP-SFLTPEKEE 621 (712)
Q Consensus 611 ~~-~l~s~~~d~ 621 (712)
-+ +|+|.+.++
T Consensus 420 iPG~lvsTa~dG 431 (440)
T KOG0302|consen 420 IPGLLVSTAIDG 431 (440)
T ss_pred CCCeEEEecccc
Confidence 55 555554443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=155.22 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=148.0
Q ss_pred eeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc----eEEeecccCcce--eeeecCCCeeEEEecCCC
Q 005140 192 DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG----AAVWGGANTFNR--LMRYAHPQVKLIDFSPGE 265 (712)
Q Consensus 192 ~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~----i~iw~~~~~~~~--~~~~~~~~v~~i~~Spdg 265 (712)
..+.+|+.+ +.....+..|...+.+++|||||++||+++.++ +.+|++. ++.. +..+. .....++|||||
T Consensus 184 ~~i~i~d~d--g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~-tg~~~~l~~~~-g~~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYD--GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR-SGARKVVASFR-GHNGAPAFSPDG 259 (429)
T ss_pred EEEEEECCC--CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC-CCceEEEecCC-CccCceeECCCC
Confidence 455677763 333455678888899999999999999987432 7899998 5443 22222 235579999999
Q ss_pred CEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeE
Q 005140 266 KYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMI 342 (712)
Q Consensus 266 ~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i 342 (712)
++|++++. + +...|++||+.++.. +.+..+..... .+.|+| ||+.|++.+ ++..
T Consensus 260 ~~La~~~~~~--------g~~~Iy~~d~~~~~~-~~lt~~~~~~~-------------~~~wSp-DG~~i~f~s~~~g~~ 316 (429)
T PRK01742 260 SRLAFASSKD--------GVLNIYVMGANGGTP-SQLTSGAGNNT-------------EPSWSP-DGQSILFTSDRSGSP 316 (429)
T ss_pred CEEEEEEecC--------CcEEEEEEECCCCCe-EeeccCCCCcC-------------CEEECC-CCCEEEEEECCCCCc
Confidence 99988753 4 012456667766654 44444433221 589999 999887766 6788
Q ss_pred EEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCC
Q 005140 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGD 422 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 422 (712)
.||+++........ ....+ ...+|+|+|+.|++ .+.+ .++.+++.+.......... ....+.|+|+|+
T Consensus 317 ~I~~~~~~~~~~~~-l~~~~-~~~~~SpDG~~ia~-----~~~~---~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~ 384 (429)
T PRK01742 317 QVYRMSASGGGASL-VGGRG-YSAQISADGKTLVM-----INGD---NVVKQDLTSGSTEVLSSTF--LDESPSISPNGI 384 (429)
T ss_pred eEEEEECCCCCeEE-ecCCC-CCccCCCCCCEEEE-----EcCC---CEEEEECCCCCeEEecCCC--CCCCceECCCCC
Confidence 88886532111111 11122 45789999999987 3332 3566777665432111111 223467999999
Q ss_pred EEEEEEcccccccccccccEEEEEEe-cCCcceeEEEecCCCCceEEEEEeeC
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIK-ERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
+|++++.++. ..+|.+. ..+.. ...+.+|.+.+..++|+|-
T Consensus 385 ~i~~~s~~g~---------~~~l~~~~~~G~~--~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGL---------GKVLQLVSADGRF--KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCC---------ceEEEEEECCCCc--eEEccCCCCCCCCcccCCC
Confidence 9999887655 3444443 23332 2445677888999999984
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=152.55 Aligned_cols=238 Identities=14% Similarity=0.075 Sum_probs=149.7
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC----ceEEeecccCcceeeeecC-CCeeEEEecCCCCEEEE
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----GAAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVT 270 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~i~iw~~~~~~~~~~~~~~-~~v~~i~~Spdg~~l~t 270 (712)
+|-.+..+.....++.+...+.+++|||||+.||+.+.. .+.+|++. +++....... ..+..+.|||||++|+.
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 444333444445566677789999999999999987532 27789988 5543322222 23667999999999987
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEE--E
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVY--E 346 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iw--d 346 (712)
..... +...|++||+.+++..+....+.... .+.|+| ||+.|++.+ ++...|| +
T Consensus 260 ~~~~~-------g~~~I~~~d~~tg~~~~lt~~~~~~~--------------~~~wSP-DG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 260 ALSKT-------GSLNLYVMDLASGQIRQVTDGRSNNT--------------EPTWFP-DSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred EEcCC-------CCcEEEEEECCCCCEEEccCCCCCcC--------------ceEECC-CCCEEEEEeCCCCCceEEEEE
Confidence 64320 11369999998887654433322222 589999 999988777 3444555 5
Q ss_pred cCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 347 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
+.++... .............|||+|++|++.. ..++...|+++++.+......... .......|+|||++|++
T Consensus 318 ~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~----~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 318 INGGAPQ-RITWEGSQNQDADVSSDGKFMVMVS----SNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCCCeE-EeecCCCCccCEEECCCCCEEEEEE----ccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEE
Confidence 5555332 1222223356789999999998742 233456788888766542221111 12335689999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
.+.++.. ..++.+...+... ..+++|.+.+...+|+|
T Consensus 391 ~s~~~~~--------~~l~~~~~~G~~~--~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMG--------SVLNLVSTDGRFK--ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCc--------eEEEEEECCCCCe--EECccCCCCcCCcccCC
Confidence 8876541 2344444333322 34556788899999998
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=138.89 Aligned_cols=293 Identities=14% Similarity=0.164 Sum_probs=192.7
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-----Ccceeeee--cC-CCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-----TFNRLMRY--AH-PQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-----~~~~~~~~--~~-~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
-+.+|.+.|+.+.||.+|++||+|+.+. +.||+++. ..+++... +| ..|.|++|....++|.+|..+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~---- 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW---- 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc----
Confidence 4568999999999999999999999998 88998761 11233322 34 459999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~ 356 (712)
++|.+-|+.+.+.+..+...... +.|. .+..+| .++.|++.+ ++.|.+||..... .+...
T Consensus 127 ------~~VI~HDiEt~qsi~V~~~~~~~------~~VY-----~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~ 188 (609)
T KOG4227|consen 127 ------GTVIKHDIETKQSIYVANENNNR------GDVY-----HMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLV 188 (609)
T ss_pred ------ceeEeeecccceeeeeecccCcc------ccee-----ecccCC-CCceEEEEecCceEEEEeccCCCCCCcee
Confidence 99999999999888777544321 1122 367788 888888888 9999999987443 11111
Q ss_pred cc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-----ecceeEEECcCCCEEEEEEc
Q 005140 357 SL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-----VSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 357 ~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~g~~l~~~~~ 429 (712)
.. .......+.|+|-...|+.. ++..+...+|....+....++...+.. ..-....|+|+|..++....
T Consensus 189 ~~AN~~~~F~t~~F~P~~P~Li~~----~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 189 LPANSGKNFYTAEFHPETPALILV----NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred eecCCCccceeeeecCCCceeEEe----ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 11 12246788999987655543 444555567766666544333221111 11245579999998876554
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCC-------CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-------DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG 502 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-------~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~ 502 (712)
... -.+|++.....++ +.. .|+ ..+.+++|.-|- .+++++.+- .|++|.+.......
T Consensus 265 ~~~---------P~~~D~~S~R~~V--~k~-D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~---~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 265 GKC---------PLYFDFISQRCFV--LKS-DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHW---GIHIWKLPRANDSY 328 (609)
T ss_pred cCC---------CEEeeeeccccee--Eec-cCCCCcceeeeeeeeeeeecce-eeeccCccc---ceEEEecCCCcccc
Confidence 433 2344444333332 111 111 235567776444 377777776 79999985422111
Q ss_pred c-----------------eeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 503 R-----------------VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 503 ~-----------------~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
. -+.+..+.+| -++.+.|+|...+|++.+. ...++||.--
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV---E~~~KlWS~~ 387 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV---ENSFKLWSDH 387 (609)
T ss_pred CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch---hhheeccccc
Confidence 1 0224455566 3689999999999999887 8899999643
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=132.25 Aligned_cols=288 Identities=14% Similarity=0.239 Sum_probs=183.2
Q ss_pred CcccceEEEcC--C-CcEEEEEec-----CceEEeeccc-Ccce--eeeecCCC-eeEEEecCCCC-----EEEEEcCCC
Q 005140 213 YWTESFVQWSP--L-GTYLATVHR-----QGAAVWGGAN-TFNR--LMRYAHPQ-VKLIDFSPGEK-----YLVTYSSHE 275 (712)
Q Consensus 213 ~~~v~~v~~Sp--d-g~~lat~~~-----~~i~iw~~~~-~~~~--~~~~~~~~-v~~i~~Spdg~-----~l~t~s~d~ 275 (712)
.|+...+.||. + +-+||.|+- +.|.|..+.. ++.. ...|.|+- ++.+.|.|+.+ .|||.+ |
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D- 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D- 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-
Confidence 37788899983 3 457888873 3455554321 3333 33456775 99999999863 455554 3
Q ss_pred CCCCcCCCccEEEEEEccC--Cce--eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 276 PSNPRDANRVVINIFDVRT--GKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~--g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
.+++|.+.. ++. ...+..+... ..+++.+ ++.|..-+-++|.+++ |.+..|||+.++
T Consensus 122 ----------~LRlWri~~ee~~~~~~~~L~~~kns---~~~aPlT-----SFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 122 ----------FLRLWRIGDEESRVELQSVLNNNKNS---EFCAPLT-----SFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ----------eEEEEeccCcCCceehhhhhccCccc---ccCCccc-----ccccccCCcceeEeecccCeEEEEEEeec
Confidence 499999863 221 1122222211 1122333 4555442557888888 999999999986
Q ss_pred e---ecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecceeEEECcCCC-EE
Q 005140 351 T---LIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGD-YL 424 (712)
Q Consensus 351 ~---~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~-~l 424 (712)
. +...+..|...|.+++|+.++. .+|+ .|+|+.++++.+.--... .+....-....-.++.|+++.. ++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FAS-----vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFAS-----VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEE-----ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 3 2333445777899999999765 4455 668888777655432222 2222222234456778988664 66
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 425 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
|+...+.. .+.+.+++....++ .+|.+|.+.|+.++|.|. +..|++++.|. .+.|||+.+.....-
T Consensus 259 ATf~~dS~--------~V~iLDiR~P~tpv--a~L~~H~a~VNgIaWaPhS~~hictaGDD~---qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 259 ATFAMDSN--------KVVILDIRVPCTPV--ARLRNHQASVNGIAWAPHSSSHICTAGDDC---QALIWDLQQMPRENG 325 (364)
T ss_pred hhhhcCCc--------eEEEEEecCCCcce--ehhhcCcccccceEecCCCCceeeecCCcc---eEEEEecccccccCC
Confidence 66555533 26788888776665 567899999999999994 67888888888 899999976443111
Q ss_pred eeEEEEeC-CCceeEEEEcc-CCCeEEEEeccCCCceEEEE
Q 005140 504 VSKLTTLK-GKQANALFWSP-SGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 504 ~~~~~~~~-~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~iw 542 (712)
..++.... ++.|+.+.|+| .+.+++++. +..+.|.
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~----~kkleiL 362 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICF----GKKLEIL 362 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEe----cCeeeEE
Confidence 22333332 56799999996 567887776 4555553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-13 Score=130.21 Aligned_cols=394 Identities=15% Similarity=0.226 Sum_probs=224.1
Q ss_pred chhhccCCCCC-ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEe------cCc--eEEeecc
Q 005140 172 LQKWLTDEKAR-DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVH------RQG--AAVWGGA 242 (712)
Q Consensus 172 l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~------~~~--i~iw~~~ 242 (712)
+...++.|+=+ |..+..+.|. +|...........++.|-+.|+...|||+|+.+|+.- .++ +.+.+.+
T Consensus 39 M~n~~l~PDI~GD~IiFt~~Dd---lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e 115 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCCDD---LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSE 115 (668)
T ss_pred hhhhhcCCcccCcEEEEEechH---HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCC
Confidence 34456666532 2333333332 6776545555567888999999999999999999831 222 5566666
Q ss_pred cCcc--eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--------------------cCCce---
Q 005140 243 NTFN--RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--------------------RTGKV--- 297 (712)
Q Consensus 243 ~~~~--~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--------------------~~g~~--- 297 (712)
.++ ++.-+...--.-.-|+|||..|++.....|.... -.+|.+ ..|..
T Consensus 116 -~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~------~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivig 188 (668)
T COG4946 116 -DGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQW------TELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIG 188 (668)
T ss_pred -CCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccc------eeeeEEccCCceeeeccCCceeeEEEeCCEEEEc
Confidence 443 3444443335566799999999988776554320 001111 01100
Q ss_pred -----eee---ccCCCcccc-cCCCC---------CcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC-Cceecccccc
Q 005140 298 -----MRD---FKGSADEFA-VGGTG---------GVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLIDKKSL 358 (712)
Q Consensus 298 -----~~~---~~~~~~~~~-~~~~~---------~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~-~~~~~~~~~~ 358 (712)
+.. +++...... ++..+ -..-++||.+ -. +.-|+.+--+|.=.+|.++ .|+-+.+. .
T Consensus 189 RntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmI--V~-~RvYFlsD~eG~GnlYSvdldGkDlrrH-T 264 (668)
T COG4946 189 RNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMI--VG-ERVYFLSDHEGVGNLYSVDLDGKDLRRH-T 264 (668)
T ss_pred cCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceE--Ec-ceEEEEecccCccceEEeccCCchhhhc-C
Confidence 000 000000000 00000 0011224322 11 1123333335555566554 23333221 1
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee--ee-eee------e-eccee-E-EEC-cCCCEEE
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR--QK-NLF------S-VSDCK-M-YWQ-SSGDYLA 425 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~-~~~------~-~~~~~-~-~~s-~~g~~l~ 425 (712)
....-.+=..+.||+.|++. ..+.||+|+..+.+.-. -. .+. . ..... + .|+ .+|.+++
T Consensus 265 nFtdYY~R~~nsDGkrIvFq--------~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia 336 (668)
T COG4946 265 NFTDYYPRNANSDGKRIVFQ--------NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIA 336 (668)
T ss_pred CchhccccccCCCCcEEEEe--------cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEE
Confidence 11122333456788888872 22347777765432111 00 000 0 00000 0 133 2677777
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+.+.. +.|.++...... +.+ +|.+.|.-..+.-+++-++.+..|+. .+-||+.+++.
T Consensus 337 ~VSRG------------kaFi~~~~~~~~--iqv-~~~~~VrY~r~~~~~e~~vigt~dgD--~l~iyd~~~~e------ 393 (668)
T COG4946 337 LVSRG------------KAFIMRPWDGYS--IQV-GKKGGVRYRRIQVDPEGDVIGTNDGD--KLGIYDKDGGE------ 393 (668)
T ss_pred EEecC------------cEEEECCCCCee--EEc-CCCCceEEEEEccCCcceEEeccCCc--eEEEEecCCce------
Confidence 66554 344444433332 444 66788888888888888999998884 79999997654
Q ss_pred EEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee--eeccccceeeEEECCCCCEEEEEEccceecc
Q 005140 506 KLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM--ATAEHFMATDVEWDPTGRYVATAVTSVHEME 581 (712)
Q Consensus 506 ~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~--~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d 581 (712)
++.+. -+.|.++..+|+|++++++.. ...|.++|++++... .....+.|+.+.|+|++++||.+--+. -..
T Consensus 394 -~kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g-y~t 468 (668)
T COG4946 394 -VKRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG-YYT 468 (668)
T ss_pred -EEEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc-eee
Confidence 23333 346899999999999999987 889999999987654 345668999999999999999986520 013
Q ss_pred ccEEEEEecCceeeee--cccceeeeEEecCCCCCC
Q 005140 582 NGFNIWSFNGKLLYRT--LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 582 ~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~~~~l~ 615 (712)
..|++++..|..++.. ....-++.+|.|++++|.
T Consensus 469 q~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred eeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 5889999998766654 334556678888887653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-13 Score=139.61 Aligned_cols=313 Identities=17% Similarity=0.229 Sum_probs=181.8
Q ss_pred CcEEEEEe-cCc-eEEeecccCcceeeeecCC-Ce-eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 225 GTYLATVH-RQG-AAVWGGANTFNRLMRYAHP-QV-KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 225 g~~lat~~-~~~-i~iw~~~~~~~~~~~~~~~-~v-~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
+++++... .++ +.|.|.. +.+.+.++... .+ ..+.|+|||+++++++.+ +.|.++|+.+++.+++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~-t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd----------g~vsviD~~~~~~v~~ 73 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGA-TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD----------GTVSVIDLATGKVVAT 73 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETT-T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT----------SEEEEEETTSSSEEEE
T ss_pred ccEEEEEecCCCEEEEEECC-CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC----------CeEEEEECCcccEEEE
Confidence 34554443 344 8899999 88888888754 34 457899999999999998 8999999999999999
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceeccccccc-------ccCeeeEEECCC
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPT 371 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~ 371 (712)
+....... .+++|+ ||++++.+. ++.+.++|..+.+++...... .+.+..+.-+|.
T Consensus 74 i~~G~~~~--------------~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 74 IKVGGNPR--------------GIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp EE-SSEEE--------------EEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred EecCCCcc--------------eEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence 98877665 699999 999999887 999999999998877543221 234677888888
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
...+++. -.....||+.+....+.+....+.. .......|+|+|+|++++.....+ +.+++....
T Consensus 139 ~~~fVv~------lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~--------i~viD~~~~ 204 (369)
T PF02239_consen 139 RPEFVVN------LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK--------IAVIDTKTG 204 (369)
T ss_dssp SSEEEEE------ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE--------EEEEETTTT
T ss_pred CCEEEEE------EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce--------eEEEeeccc
Confidence 8855542 2345688999876655443322211 112245799999999887554321 222222211
Q ss_pred CcceeEEEe--cCCCCceEEE-------EEee--CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeE
Q 005140 451 DIPIEVLEL--DNKNDKIIAF-------AWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANA 517 (712)
Q Consensus 451 ~~~~~~~~l--~~h~~~v~~~-------~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~ 517 (712)
.. ...+.. ..|..++..+ .|.. .+...+...+.. .+.+|+..+. +.+.++. +.+ .-
T Consensus 205 k~-v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~---~v~v~d~~~w------kvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 205 KL-VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD---PVSVHDDYAW------KVVKTIPTQGGG-LF 273 (369)
T ss_dssp EE-EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-----TTT-STTTBT------SEEEEEE-SSSS---
T ss_pred eE-EEEeeccccccccccccccCCCcceEEeeccccceecccccCC---ccccchhhcC------eEEEEEECCCCc-ce
Confidence 10 000110 0122222222 2322 223322222222 3445555432 2555554 334 67
Q ss_pred EEEccCCCeEEEEe-ccCCCceEEEEECCcceeeeecc---ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 518 LFWSPSGRFIVLAG-LKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 518 l~~spdg~~l~~~~-~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+..+|+++++.+.. .+...+.|.++|..+.+.+.+.. ...+.++.|+++|+++..+.... ++.|.|||...
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~---~~~i~v~D~~T 348 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG---NGAIVVYDAKT 348 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----TTEEEEEETTT
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC---CCEEEEEECCC
Confidence 78899999999982 12226899999999998776632 23489999999999887776621 33799999764
|
... |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-12 Score=140.45 Aligned_cols=345 Identities=21% Similarity=0.326 Sum_probs=234.7
Q ss_pred EEECCeeEEEecCCCCCCCcccccCCC-cccceEEE-cCCCc-EEEEEec-Cc-eEEeecccC-cceeeee-cCC-CeeE
Q 005140 187 IRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQW-SPLGT-YLATVHR-QG-AAVWGGANT-FNRLMRY-AHP-QVKL 258 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~-Spdg~-~lat~~~-~~-i~iw~~~~~-~~~~~~~-~~~-~v~~ 258 (712)
....++.+.+|+..........+..+. ..+..+.+ ++++. +++..+. ++ +.+|+.. . ......+ .|. .|..
T Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 160 (466)
T COG2319 82 SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS-TPGKLIRTLEGHSESVTS 160 (466)
T ss_pred EecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec-CCCeEEEEEecCcccEEE
Confidence 334578888999843332455555533 36666666 89898 4554444 66 7799998 4 4444433 344 5999
Q ss_pred EEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEE
Q 005140 259 IDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAK 336 (712)
Q Consensus 259 i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~ 336 (712)
++|+|+++++++++. + +.+++|++.++..+..+.+|...+. .+.|+| ++. ++++
T Consensus 161 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~~ 216 (466)
T COG2319 161 LAFSPDGKLLASGSSLD----------GTIKLWDLRTGKPLSTLAGHTDPVS-------------SLAFSP-DGGLLIAS 216 (466)
T ss_pred EEECCCCCEEEecCCCC----------CceEEEEcCCCceEEeeccCCCceE-------------EEEEcC-CcceEEEE
Confidence 999999998888875 7 8999999988888888888776653 689999 998 5566
Q ss_pred ec-CCeEEEEEcCCceecc-cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 337 LG-KNMISVYETESFTLID-KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
++ |+.|.+|+...+..+. ....|...+ ...|+|++..++. ++.++.+++|....... .+.....+......
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~ 289 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS-----GSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLS 289 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE-----ecCCCcEEEeeecCCCc-EEEEEecCCccEEE
Confidence 35 9999999888666655 344455543 3389999977776 66777777776654443 11111222344455
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE-EcCCCCCeEEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HGDSPRPDISFY 493 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~d~~~~~v~i~ 493 (712)
+.|+|++..++++..+.. +.+|++.......... ...|...+..+.|++++..++.+ ..++ .+.+|
T Consensus 290 ~~~~~~~~~~~~~~~d~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~ 356 (466)
T COG2319 290 VAFSPDGKLLASGSSDGT---------VRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDG---TIRLW 356 (466)
T ss_pred EEECCCCCEEEEeeCCCc---------EEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCC---cEEee
Confidence 689998888888666643 5777554433222111 23667778999994343566666 3555 78889
Q ss_pred EeecccccCceeEEEEeCCC-ceeEEEEccCCCeEEE-EeccCCCceEEEEECCcceeeeeccc--cceeeEEECCCCCE
Q 005140 494 SMRTAQHAGRVSKLTTLKGK-QANALFWSPSGRFIVL-AGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRY 569 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~-~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~~~~~spdg~~ 569 (712)
++.... ........ .+..+.+++ ...++. +.. ++.+.+|+............ ..+....+++++.+
T Consensus 357 ~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (466)
T COG2319 357 DLRTGK------PLKTLEGHSNVLSVSFSP-DGRVVSSGST---DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426 (466)
T ss_pred ecCCCc------eeEEecCCceEEEEEECC-CCCEEEEecC---CCceEEEecccCeeeeeccCCCCcEEEEEECCCCcE
Confidence 986543 22222222 278899999 633333 344 89999999997776655333 68889999999999
Q ss_pred EEEEEccceeccccEEEEEecC
Q 005140 570 VATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+++++. ++.+++|+...
T Consensus 427 ~~~~~~-----~~~~~~~~~~~ 443 (466)
T COG2319 427 LASGSS-----DNTIRLWDLKT 443 (466)
T ss_pred EEEecC-----CCcEEEEeccC
Confidence 999888 89999999876
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-14 Score=129.92 Aligned_cols=251 Identities=16% Similarity=0.255 Sum_probs=168.4
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeecc---cCcceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCcC
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA---NTFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~---~~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~~ 281 (712)
.+|..-|.|+.|.+-|+.+||++.|+ ++|||.. +++.+.... .|. .|..+.|.+- |+.+|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D------- 82 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD------- 82 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC-------
Confidence 57888999999999999999999998 8999953 233344433 244 4999999763 8999999999
Q ss_pred CCccEEEEEEccC------C---ceeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec-CCeEEEEEcCCc
Q 005140 282 ANRVVINIFDVRT------G---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 282 ~~~~~I~iwd~~~------g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~-d~~i~iwd~~~~ 350 (712)
+++.||.-.. | ....++......++ .++|.|. -|-.+|+++ ||.++||++..-
T Consensus 83 ---rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~-------------DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 83 ---RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVT-------------DVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ---CceeeeeecccccccccceeEEEEEeecCCccee-------------EEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 9999997411 1 12333433333332 6888872 355788888 999999997642
Q ss_pred e------eccccc-------ccccCeeeEEECCC---CCeEEEEeecCCCCCCCeEEEEEecCCcccee--eeeeeeecc
Q 005140 351 T------LIDKKS-------LKVENVMDFSWSPT---DPIISLFVPELGGGNQPARVSLVQIPSKEELR--QKNLFSVSD 412 (712)
Q Consensus 351 ~------~~~~~~-------~~~~~v~~~~~sp~---~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~ 412 (712)
. +..... .+.....|+.|+|. ..+||+...+.+..-+.+.||-++-..++... ...-+...+
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 2 111111 12234678999986 56788733222111124455555544444322 333345556
Q ss_pred eeEEECcCCC----EEEEEEcccccccccccccEEEEEEec----------------CCcceeEEE-ecCCCCceEEEEE
Q 005140 413 CKMYWQSSGD----YLAVKVDRYTKTKKSTYTGFELFRIKE----------------RDIPIEVLE-LDNKNDKIIAFAW 471 (712)
Q Consensus 413 ~~~~~s~~g~----~l~~~~~~~~~~~~~~~~~~~l~~l~~----------------~~~~~~~~~-l~~h~~~v~~~~~ 471 (712)
..+.|.|+-. .||+++.++ ++||.+.. ...++..+. +.+|++.|..+.|
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg----------v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG----------VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc----------EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 6789999642 567777664 47887763 113334443 6789999999999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+-.|..|++.+.|| .|++|...
T Consensus 297 NmtGtiLsStGdDG---~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDG---CVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCc---eeeehhhh
Confidence 99999999999999 99999874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-15 Score=146.57 Aligned_cols=255 Identities=13% Similarity=0.231 Sum_probs=172.7
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCceEEe-ecccCcceeeeecCCCeeEEEe----c----CCCCEEEEEcCCCCCCCc
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQGAAVW-GGANTFNRLMRYAHPQVKLIDF----S----PGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~i~iw-~~~~~~~~~~~~~~~~v~~i~~----S----pdg~~l~t~s~d~~~~~~ 280 (712)
.+|..-+.|+.|+.+...+.+++.+.+.+| ++......+...+...+....+ | .....++.++.|
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~D------ 84 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSND------ 84 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCC------
Confidence 366666779999988877766666666655 4442333333333222211111 1 112467778888
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.+.|.+ +.|+..+.+..|...+. +-+|+| ||.-|.+.+ ||.|++|.-..+ +-......
T Consensus 85 ----Gkf~il~-k~~rVE~sv~AH~~A~~-------------~gRW~~-dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~ 144 (737)
T KOG1524|consen 85 ----GRFVILN-KSARVERSISAHAAAIS-------------SGRWSP-DGAGLLTAGEDGVIKIWSRSGM-LRSTVVQN 144 (737)
T ss_pred ----ceEEEec-ccchhhhhhhhhhhhhh-------------hcccCC-CCceeeeecCCceEEEEeccch-HHHHHhhc
Confidence 8888887 68888888888887763 579999 999999998 999999986532 21122223
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
...|.|++|.|+.+.++++ .+ +.+.|.-+ .++
T Consensus 145 ~~~v~c~~W~p~S~~vl~c-----~g-~h~~IKpL-----------------------~~n------------------- 176 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFC-----QG-GHISIKPL-----------------------AAN------------------- 176 (737)
T ss_pred CceeEEEEECCCCCceEEe-----cC-CeEEEeec-----------------------ccc-------------------
Confidence 3469999999998888872 11 11111000 011
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eCCCceeEE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANAL 518 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~l 518 (712)
...+...+|.+-|.++.|+|.++.+++++.|- ..++||-.... +..+ .+.++|+++
T Consensus 177 --------------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~---kfKvWD~~G~~------Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 177 --------------SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF---RFKIWDAQGAN------LFTSAAEEYAITSV 233 (737)
T ss_pred --------------cceeEEeccCcEEEEeecCccccceeecCCce---eEEeecccCcc------cccCChhccceeee
Confidence 11244558899999999999999999999998 89999974322 2222 235589999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEc
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+|+|+ +.+++++. .+++ +.+...+.|..++|||||..++.|+.
T Consensus 234 a~npd-~~~~v~S~----nt~R---------~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSY----NTAR---------FSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeccc-cceeeeee----eeee---------ecCCCccceEEEEEcCCCceeecccc
Confidence 99999 66677764 4444 33445678889999999999999988
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-14 Score=151.61 Aligned_cols=246 Identities=15% Similarity=0.222 Sum_probs=154.4
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
..|.++|..... ......+...+.+.+|||||+.|++... .++...||++++.+.+...... .........|+|
T Consensus 176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~----~~~~~~I~~~dl~~g~~~~l~~-~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSF----ESKKPVVYVHDLATGRRRVVAN-FKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEc----cCCCcEEEEEECCCCCEEEeec-CCCCccceEECC
Confidence 456677664322 2222234456889999999999988421 2344679999987765432221 222334578999
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+|+.|++...... ...||.++..+... ..+..+.+...+.+|+|||++|++.+..+....|+.+++.++.
T Consensus 250 DG~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 250 DGRTLAVALSRDG--------NSQIYTVNADGSGL--RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CCCEEEEEEccCC--------CceEEEEECCCCCc--EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 9999987544321 25788776544332 3344455566778999999999988764332244444443322
Q ss_pred ccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEcccee
Q 005140 500 HAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 500 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
...+ ++.+......+|||||++|+..+.......|++||+.+++............+.|+|||++|++++..
T Consensus 320 ----~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~--- 391 (427)
T PRK02889 320 ----AQRV-TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ--- 391 (427)
T ss_pred ----eEEE-ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec---
Confidence 1122 23333445689999999999876522134799999987665433333345688999999999998873
Q ss_pred ccc--cEEEEEecCceeeee--cccceeeeEEecC
Q 005140 580 MEN--GFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 580 ~d~--~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
.+ .+.+.+.+|...... +.+.+...+|+|.
T Consensus 392 -~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 -GGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 22 344556667655444 4467888999985
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-14 Score=152.66 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=150.8
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.+||.. |...+.+..+...+. .++||| ||+.|++.+ ...|.+|++.++...... ...
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~-------------~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~ 247 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPIL-------------SPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFR 247 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccc-------------cccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCC
Confidence 579999974 544455544443331 579999 999999876 346999999876542211 111
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
.....++|+|+|+.|++.. +.++...|+++++.+..
T Consensus 248 g~~~~~~~SpDG~~l~~~~----s~~g~~~Iy~~d~~~g~---------------------------------------- 283 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTL----SRDGNPEIYVMDLGSRQ---------------------------------------- 283 (433)
T ss_pred CCccCceECCCCCEEEEEE----eCCCCceEEEEECCCCC----------------------------------------
Confidence 2234677888888776521 12233344444432211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
. ..+..+......++|+|||++|++++.......|+++++.++.. ..+. ..+.....++|
T Consensus 284 -------------~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~----~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 284 -------------L--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA----ERLT-FQGNYNARASV 343 (433)
T ss_pred -------------e--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEee-cCCCCccCEEE
Confidence 1 11222333445679999999999887644333566677654331 2232 33344557899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee--c
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--L 598 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~--~ 598 (712)
||||++|+..+.......|.+||+.+++.....+......+.|+|||++|+..+.. .....+.+++..|...... +
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEcccC
Confidence 99999999876422134799999987765443333345678999999999888762 1124577778887765544 3
Q ss_pred ccceeeeEEecC
Q 005140 599 KDHFFQFLWRPR 610 (712)
Q Consensus 599 ~~~i~~~~w~p~ 610 (712)
.+.+...+|+|.
T Consensus 422 ~g~~~~p~wsp~ 433 (433)
T PRK04922 422 DGEVREPAWSPY 433 (433)
T ss_pred CCCCCCCccCCC
Confidence 456788899873
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=141.35 Aligned_cols=268 Identities=13% Similarity=0.182 Sum_probs=182.5
Q ss_pred eEEecCCCCC--EEEEec-CCeEEEEEcCCce-e---cccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEE
Q 005140 323 VFRWGGGKDK--YFAKLG-KNMISVYETESFT-L---IDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 323 ~~~~s~~dg~--~la~~~-d~~i~iwd~~~~~-~---~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~ 394 (712)
+++|.| ... ++|+|. .|.|-+||+.+.. . +-....|...|.++.|+|.+. .+.. .+.|+.++...+
T Consensus 191 ~l~fHP-t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-----sSyDGtiR~~D~ 264 (498)
T KOG4328|consen 191 SLAFHP-TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS-----SSYDGTIRLQDF 264 (498)
T ss_pred EEEecc-cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee-----eccCceeeeeee
Confidence 789999 654 666666 8999999995221 1 112234667799999999753 4444 668899888877
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
+....+.+....-.....+.+.++.+...++++.. ++.+.+|+++..+.....+.+ |...|.+++++|.
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~---------~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN---------VGNFNVIDLRTDGSEYENLRL--HKKKITSVALNPV 333 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeec---------ccceEEEEeecCCccchhhhh--hhcccceeecCCC
Confidence 76655544333212222233445555555555544 334789999987776555555 6779999999995
Q ss_pred C-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC----cce
Q 005140 475 G-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD----ELE 548 (712)
Q Consensus 475 g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~----~~~ 548 (712)
. .+||+++.|+ +++|||++....... -.+.++. .+.|++..|||.|-.|++.+. |..|+|||.. ...
T Consensus 334 ~p~~laT~s~D~---T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 334 CPWFLATASLDQ---TAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAKDE 406 (498)
T ss_pred CchheeecccCc---ceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeecc---CCceEEeecccccccCC
Confidence 4 5778888898 999999987544321 1344444 347999999999888999998 9999999984 222
Q ss_pred eeeec-------cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce-eeeeccc---cee-eeEEecCCCCCCC
Q 005140 549 TMATA-------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LYRTLKD---HFF-QFLWRPRPPSFLT 616 (712)
Q Consensus 549 ~~~~~-------~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~~~~---~i~-~~~w~p~~~~l~s 616 (712)
.+.+. .+-......|.|+-.+|+++.. ...|-|++-+|.. +...|.. .|. -..|+|....+++
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~-----~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY-----PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEecc-----CcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 22221 1123446899999999999988 6789999988766 4443332 222 3589999887776
Q ss_pred hhh
Q 005140 617 PEK 619 (712)
Q Consensus 617 ~~~ 619 (712)
++.
T Consensus 482 G~~ 484 (498)
T KOG4328|consen 482 GGN 484 (498)
T ss_pred cCC
Confidence 653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-14 Score=136.73 Aligned_cols=291 Identities=15% Similarity=0.220 Sum_probs=181.9
Q ss_pred eEEEcCCCcEEEEEecCc----eEEeecccCcceeeeecCCC-----eeEEEecCC-------CCEEEEEcCCCCCCCcC
Q 005140 218 FVQWSPLGTYLATVHRQG----AAVWGGANTFNRLMRYAHPQ-----VKLIDFSPG-------EKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~----i~iw~~~~~~~~~~~~~~~~-----v~~i~~Spd-------g~~l~t~s~d~~~~~~~ 281 (712)
-+..-|+..+|+++.... +-+|=.+ ....-.-.||.- ..|+.|-.. |+|+|.|..+
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn-~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd------- 201 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYN-EEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD------- 201 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEc-CCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccC-------
Confidence 456778777777776432 2244333 222222234432 356666432 6799999999
Q ss_pred CCccEEEEEEccCCcee---eec----------cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEc
Q 005140 282 ANRVVINIFDVRTGKVM---RDF----------KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYET 347 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~ 347 (712)
..|.|||+.-...+ -.+ .+.......+++..+- .+.|.......||+++ |.+|.+||+
T Consensus 202 ---p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl-----~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 202 ---PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL-----ALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred ---ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH-----HHHhccccceeEEecCCCceEEEEEc
Confidence 78999997321100 000 0000000011111222 2444441345889998 999999999
Q ss_pred CCceecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE-EE
Q 005140 348 ESFTLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY-LA 425 (712)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~ 425 (712)
.++++......|...|+++.|+|... +|++ |+.++.+.+.....++...... -+....-++.|.|.... ++
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs-----Gs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLS-----GSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEe-----ccccceEEeeeccCccccCceE--EeccceEEEEecCCCceeEE
Confidence 99998877777788899999999854 5555 7778877766655433221111 13444556789987764 44
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+++++++ ++-++++..+.++ .++.+|.+.|.++++++.-. .+++++.++ .|++|++...... .
T Consensus 347 ~~tddG~---------v~~~D~R~~~~~v--wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~---~Vklw~~~~~~~~--~ 410 (463)
T KOG0270|consen 347 VSTDDGT---------VYYFDIRNPGKPV--WTLKAHDDEISGLSVNIQTPGLLSTASTDK---VVKLWKFDVDSPK--S 410 (463)
T ss_pred EecCCce---------EEeeecCCCCCce--eEEEeccCCcceEEecCCCCcceeeccccc---eEEEEeecCCCCc--c
Confidence 5556665 7778888777655 66778999999999998654 566777788 9999999754422 1
Q ss_pred eEEEEeCCCceeEEEEccCCCe-EEEEeccCCCceEEEEECCcceee
Q 005140 505 SKLTTLKGKQANALFWSPSGRF-IVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 505 ~~~~~~~~~~v~~l~~spdg~~-l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
...+.+.-+...|+++.|+-.+ +++|+. .+.+++||+.+...+
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~---k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGE---KAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCc---cceEEEeecccChhH
Confidence 1223333334677788887654 455554 678999998865544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-14 Score=149.36 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=157.7
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.++|. +|...+.+..+...+. .++||| ||+.|++.+ ...|.+|++.++...... ...
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~-------------~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~~ 239 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPII-------------SPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NFK 239 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcc-------------cceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee-cCC
Confidence 46888886 5555555544443331 589999 999998876 245999999877543211 112
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+...+|||||+.|++. .+.++...||.++...... ............+.|+|||++|++.+++..
T Consensus 240 g~~~~~~~SPDG~~la~~----~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g-------- 306 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVA----LSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGG-------- 306 (427)
T ss_pred CCccceEECCCCCEEEEE----EccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCC--------
Confidence 345678999999998863 2356678899988765442 221112223345689999999998765421
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
...+|.++..+.....+... .......+|||+|++|++.+.++....|.+|++.++.. ..+. .......+.|
T Consensus 307 ~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt--~~~~~~~p~~ 378 (427)
T PRK02889 307 APQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALT--DTTRDESPSF 378 (427)
T ss_pred CcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEcc--CCCCccCceE
Confidence 24688877544443344432 23345689999999999988765444799999876542 1222 2223467899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceee-eeccccceeeEEECCC
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETM-ATAEHFMATDVEWDPT 566 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~-~~~~~~~v~~~~~spd 566 (712)
+|||++|++++.......+++.+++..... ...+.+.+..++|||-
T Consensus 379 spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 379 APNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 999999998876332345777777533222 1234567788899984
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-14 Score=148.51 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=159.4
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|++||. .|...+.+..+...+. .++||| ||+.|++.+ +..|.+|++.++.... .....
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~-------------~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~ 245 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVL-------------TPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP 245 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeE-------------eeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC
Confidence 57999997 5555555655544432 689999 999998876 4689999998775421 11222
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+...+|||||+.|++. .+.++...||.+++....... ............|+|+|++|++.+++..
T Consensus 246 g~~~~~~~SPDG~~la~~----~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g-------- 312 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMS----LSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSG-------- 312 (435)
T ss_pred CcccCcEECCCCCEEEEE----EecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCC--------
Confidence 346788999999988764 234566789999887654322 2222223445789999999998875422
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
...+|.++..+.....+.. +.+.+....|+|+|++|++...++....|.+|++.++.. ..+. ....+..+.|
T Consensus 313 ~~~Iy~~d~~g~~~~~lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt--~~~~~~~p~~ 384 (435)
T PRK05137 313 SPQLYVMNADGSNPRRISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----RILT--SGFLVEGPTW 384 (435)
T ss_pred CCeEEEEECCCCCeEEeec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----Eecc--CCCCCCCCeE
Confidence 1356666554444333332 345567789999999999988654434678888744321 1221 1234678999
Q ss_pred ccCCCeEEEEeccCCC---ceEEEEECCcceeeeeccccceeeEEECCC
Q 005140 521 SPSGRFIVLAGLKGFN---GQLEFYNVDELETMATAEHFMATDVEWDPT 566 (712)
Q Consensus 521 spdg~~l~~~~~~~~d---g~v~iwd~~~~~~~~~~~~~~v~~~~~spd 566 (712)
||||++|++.+..... ..|+++++.++........+.+...+|||-
T Consensus 385 spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 385 APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 9999999887642211 468889988655433233345678899873
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-13 Score=139.37 Aligned_cols=335 Identities=15% Similarity=0.195 Sum_probs=186.1
Q ss_pred ceE-EEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEE
Q 005140 183 DQF-VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLI 259 (712)
Q Consensus 183 ~~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i 259 (712)
+.| ++-.+++.+.+.+. ...+....+......-..+.|||||+++++++.++ +.++|+. +.+.+.++.... ..++
T Consensus 6 ~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecCCCcceE
Confidence 344 44556677777777 45666666654443334578999999999999888 8899999 888888887554 8999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~ 338 (712)
++||||+|++++...+ +.+.|+|..+.+.++.+......... ..+++. .+.-+| ... +++..-
T Consensus 84 ~~s~DG~~~~v~n~~~---------~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~-----aIv~s~-~~~~fVv~lk 147 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEP---------GTVSVIDAETLEPVKTIPTGGMPVDG-PESRVA-----AIVASP-GRPEFVVNLK 147 (369)
T ss_dssp EE--TTTEEEEEEEET---------TEEEEEETTT--EEEEEE--EE-TTT-S---EE-----EEEE-S-SSSEEEEEET
T ss_pred EEcCCCCEEEEEecCC---------CceeEeccccccceeecccccccccc-cCCCce-----eEEecC-CCCEEEEEEc
Confidence 9999999999887542 78999999999999887654322100 001111 355677 666 444445
Q ss_pred -CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee----eeeecc
Q 005140 339 -KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN----LFSVSD 412 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~ 412 (712)
.+.|.+.|....+.+.......+ ...+..|+|++++++.. ....-.|..++..+.+.+.... .+....
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va------~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA------ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE------EGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeec------ccccceeEEEeeccceEEEEeecccccccccc
Confidence 58888888765543322223322 36789999999988752 2223366677766654332211 111111
Q ss_pred e-------eEEECc--CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE--
Q 005140 413 C-------KMYWQS--SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-- 481 (712)
Q Consensus 413 ~-------~~~~s~--~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-- 481 (712)
. ...|.. .+...+.............+.. ..+..+.. ..++ ..+..+|+++++.+.
T Consensus 222 ~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w----------kvv~~I~~--~G~g-lFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW----------KVVKTIPT--QGGG-LFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT----------SEEEEEE---SSSS---EE--TT-SEEEEE-T
T ss_pred ccccCCCcceEEeeccccceecccccCCccccchhhcC----------eEEEEEEC--CCCc-ceeecCCCCccEEeecc
Confidence 1 112322 2222222221111111111100 11122333 2333 677889999999998
Q ss_pred -EcCCCCCeEEEEEeecccccCceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccc
Q 005140 482 -HGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFM 557 (712)
Q Consensus 482 -~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~ 557 (712)
+.+ ...|.++|.++.. .+.++. +..+..+.|+++|+++.++.... ++.|.+||..+.+.+....
T Consensus 289 ~~~~--~~~v~viD~~tl~------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~-~~~i~v~D~~Tl~~~~~i~--- 356 (369)
T PF02239_consen 289 LNPD--ADTVQVIDKKTLK------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG-NGAIVVYDAKTLKEKKRIP--- 356 (369)
T ss_dssp T-SS--HT-EEEEECCGTE------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE---TTEEEEEETTTTEEEEEEE---
T ss_pred CCCC--CceEEEEECcCcc------eeEEEeccCCCcEeccEECCCCCEEEEEEecC-CCEEEEEECCCcEEEEEEE---
Confidence 333 2389999997653 455553 33588999999999988877643 5589999999999887644
Q ss_pred eeeEEECCCCCEE
Q 005140 558 ATDVEWDPTGRYV 570 (712)
Q Consensus 558 v~~~~~spdg~~l 570 (712)
.-+|.|.|.
T Consensus 357 ----~~tP~G~f~ 365 (369)
T PF02239_consen 357 ----VPTPTGKFN 365 (369)
T ss_dssp ------SEEEEEE
T ss_pred ----eeCCCeEec
Confidence 345555553
|
... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=147.72 Aligned_cols=242 Identities=17% Similarity=0.166 Sum_probs=145.7
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
+.+||..+........+...+.++.|||||++|++++... ....|++||+.+|+.... .......
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~-------~~~~l~~~dl~~g~~~~l-~~~~g~~------- 250 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER-------GRSAIYVQDLATGQRELV-ASFRGIN------- 250 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC-------CCcEEEEEECCCCCEEEe-ccCCCCc-------
Confidence 6688887332333333334589999999999999887541 125799999988765332 2211111
Q ss_pred cCCCCcCeEEecCCCCCEEEEec--CC--eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~--d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
. .++||| ||+.|+... ++ .|.+|++.++.... ...+......++|+|||+.|++... ..+...|
T Consensus 251 -----~-~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd----~~g~~~i 318 (433)
T PRK04922 251 -----G-APSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSD----RGGRPQI 318 (433)
T ss_pred -----c-CceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEEC----CCCCceE
Confidence 1 479999 999876543 33 68899988765432 2122222456778888877776211 1122233
Q ss_pred EEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 392 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+.++... .....+.. +......++|
T Consensus 319 y~~dl~~-----------------------------------------------------g~~~~lt~--~g~~~~~~~~ 343 (433)
T PRK04922 319 YRVAASG-----------------------------------------------------GSAERLTF--QGNYNARASV 343 (433)
T ss_pred EEEECCC-----------------------------------------------------CCeEEeec--CCCCccCEEE
Confidence 3333211 11111221 1223346799
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
||+|++|++.+.++....|.+|++.++.. ..+. .+.....+.|+|||++|++.+.....+.|+++++.+.....
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR 417 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCe----EECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 99999999887654434789999865432 1221 12234568999999998887753334678889987543332
Q ss_pred e-ccccceeeEEECC
Q 005140 552 T-AEHFMATDVEWDP 565 (712)
Q Consensus 552 ~-~~~~~v~~~~~sp 565 (712)
. .+.+.+..++|||
T Consensus 418 l~~~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSADGEVREPAWSP 432 (433)
T ss_pred cccCCCCCCCCccCC
Confidence 2 3346678889987
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-14 Score=143.07 Aligned_cols=286 Identities=11% Similarity=0.098 Sum_probs=184.5
Q ss_pred CCCCCceEEEEECCeeEEEecCCCCC-C----CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee-
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDARHL-K----PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR- 250 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~~~-~----~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~- 250 (712)
.+..+..+++.-.++.+.+++..... . .......|...|..+.|-|....|+++++|. +++||+. +...+..
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~~ 138 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGGR 138 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecce
Confidence 34556677788888889899873211 1 1244578999999999999667889999888 7899998 5444433
Q ss_pred --ecCCC-eeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCce-------eeeccCCCc------ccccC--
Q 005140 251 --YAHPQ-VKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKV-------MRDFKGSAD------EFAVG-- 311 (712)
Q Consensus 251 --~~~~~-v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-------~~~~~~~~~------~~~~~-- 311 (712)
+.|.+ |.+++|+|... .+++|+.| |.|.|||++-... .+....|.. .....
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRD----------g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRD----------GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCC----------CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 45665 99999999774 67899999 9999999853220 011111111 00000
Q ss_pred ----CCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceec------ccccc--c---ccCeeeEEECCCCCe
Q 005140 312 ----GTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLI------DKKSL--K---VENVMDFSWSPTDPI 374 (712)
Q Consensus 312 ----~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~------~~~~~--~---~~~v~~~~~sp~~~~ 374 (712)
....+.+ .. .+.+.. |+..||+++ |+.|+|||+...... ..... + .-++.++.....|.+
T Consensus 209 k~kA~s~ti~s-sv-Tvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 209 KWKAASNTIFS-SV-TVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred ccccccCceee-ee-EEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 0000011 00 145566 888999888 999999999854322 11112 2 235788888888888
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeee--eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLF--SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~--~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
|... ..| ..|+.|++.+.. ++...... ....++-..+|+|.+++.++.+.. ..+|.+...
T Consensus 286 L~As-----CtD--~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~---------ayiw~vs~~ 349 (720)
T KOG0321|consen 286 LFAS-----CTD--NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ---------AYIWVVSSP 349 (720)
T ss_pred EEEE-----ecC--CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc---------eeeeeecCc
Confidence 8772 233 357777776543 22111111 011111235899999999998876 678888765
Q ss_pred CcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeecc
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
..+. ..+.+|...|++++|.|. -.-+++++.|. .++||++..+
T Consensus 350 e~~~--~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~---~~kiW~l~~~ 393 (720)
T KOG0321|consen 350 EAPP--ALLLGHTREVTTVRWLPSATTPVATCSDDF---RVKIWRLSNG 393 (720)
T ss_pred cCCh--hhhhCcceEEEEEeeccccCCCceeeccCc---ceEEEeccCc
Confidence 4443 445689999999999983 34566668888 8999999653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=161.00 Aligned_cols=244 Identities=16% Similarity=0.277 Sum_probs=167.3
Q ss_pred ccceEEEcCCCcE----EEEEecCc-eEEeecccCc------ceeeee--cCCCeeEEEecCCCC-EEEEEcCCCCCCCc
Q 005140 215 TESFVQWSPLGTY----LATVHRQG-AAVWGGANTF------NRLMRY--AHPQVKLIDFSPGEK-YLVTYSSHEPSNPR 280 (712)
Q Consensus 215 ~v~~v~~Spdg~~----lat~~~~~-i~iw~~~~~~------~~~~~~--~~~~v~~i~~Spdg~-~l~t~s~d~~~~~~ 280 (712)
.-+.++|++.|.. ||.|..|| |.+|+.. .. ..+.++ |+..|..+.|++.+. .||+|+.+
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~-~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~------ 138 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPA-SIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD------ 138 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecch-hhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC------
Confidence 4467999998876 88899999 8899987 32 123333 344599999999865 99999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|.|||+..-+.-.++... ...+.+. +++|+.+....||+++ +|.+.|||++..+.+-+...+
T Consensus 139 ----geI~iWDlnn~~tP~~~~~~------~~~~eI~-----~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~ 203 (1049)
T KOG0307|consen 139 ----GEILIWDLNKPETPFTPGSQ------APPSEIK-----CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT 203 (1049)
T ss_pred ----CcEEEeccCCcCCCCCCCCC------CCcccce-----EeccchhhhHHhhccCCCCCceeccccCCCcccccccC
Confidence 99999998654332222111 0011112 6788763456788888 889999999966555333222
Q ss_pred cc--CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 360 VE--NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 360 ~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.. .+..++|+|++.. .|++++++..
T Consensus 204 ~~~~~~S~l~WhP~~aT------------------------------------------------ql~~As~dd~----- 230 (1049)
T KOG0307|consen 204 PGRMHCSVLAWHPDHAT------------------------------------------------QLLVASGDDS----- 230 (1049)
T ss_pred CCccceeeeeeCCCCce------------------------------------------------eeeeecCCCC-----
Confidence 22 2556666666422 2222222221
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--Cc
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQ 514 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~ 514 (712)
...+.+|+++....|... +.+|...|.++.|++.+ +++++++.|+ .|.+|+.+++. .+..+.. ..
T Consensus 231 -~PviqlWDlR~assP~k~--~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~~tgE------vl~~~p~~~nW 298 (1049)
T KOG0307|consen 231 -APVIQLWDLRFASSPLKI--LEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNPNTGE------VLGELPAQGNW 298 (1049)
T ss_pred -CceeEeecccccCCchhh--hcccccceeeeccCCCCchhhhcccCCC---CeeEecCCCce------EeeecCCCCcc
Confidence 112678888876666533 46899999999999966 7777777788 89999998765 6666663 46
Q ss_pred eeEEEEccCCC-eEEEEeccCCCceEEEEECCcce
Q 005140 515 ANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 515 v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
+..+.|.|..- .+++++. +|.|.||.+.++.
T Consensus 299 ~fdv~w~pr~P~~~A~asf---dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASF---DGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhhee---ccceeeeeeecCC
Confidence 88999999776 6666776 9999999988544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-13 Score=140.46 Aligned_cols=252 Identities=12% Similarity=0.075 Sum_probs=149.1
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE--EEEec--C--CeEEEEEcCCceecccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY--FAKLG--K--NMISVYETESFTLIDKKSL 358 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~--la~~~--d--~~i~iwd~~~~~~~~~~~~ 358 (712)
..|.+.|...+. .+.+........ ..+||| ||+. ++..+ + ..|.+.++.++...... .
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~-------------sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~ 228 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSI-------------TPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-A 228 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcc-------------cceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEee-c
Confidence 578888874443 444444332221 469999 9975 33333 3 35777787766532211 1
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeee-eeeecceeEEECcCCCEEEEEEccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKN-LFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
........+|||||+.|++..... +.....+..|++... ....... ..........|+|||+.|++.++...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~--g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g--- 303 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRY--GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG--- 303 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCC--CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---
Confidence 122345689999999999853222 222333433554432 1111111 11122345789999999998775421
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCce
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA 515 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v 515 (712)
...+|.+...........+..+...+...+|||||++|++.+.+.....|.+||+.++.. ..+... ...+
T Consensus 304 -----~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~-~~~~ 373 (428)
T PRK01029 304 -----RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTS-PENK 373 (428)
T ss_pred -----CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCC-CCCc
Confidence 135666543211111233434455677899999999999987754445899999876542 122211 2346
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCC
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTG 567 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg 567 (712)
..+.|+|||++|++.........|+++|+.+++.... ...+.+...+|||-.
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 7799999999988765433357899999987665433 233556788999854
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-14 Score=132.11 Aligned_cols=202 Identities=15% Similarity=0.230 Sum_probs=143.9
Q ss_pred eeEEEecCCC--CEEEEEcCCCCCCCcCCCccEEEEEEccC----------------CceeeeccCCCcccccCCCCCcC
Q 005140 256 VKLIDFSPGE--KYLVTYSSHEPSNPRDANRVVINIFDVRT----------------GKVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 256 v~~i~~Spdg--~~l~t~s~d~~~~~~~~~~~~I~iwd~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
+..+.-++-| .+.++.+.. |.|.||++.. .+++.++.+|...-
T Consensus 154 ~NRvr~~~~~~~~~~aswse~----------G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EG--------- 214 (440)
T KOG0302|consen 154 INRVRVSRLGNEVLCASWSEN----------GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEG--------- 214 (440)
T ss_pred cceeeecccCCcceeeeeccc----------CcEEEEEchhhhhhhcCccccccccccCceEEecccCccc---------
Confidence 6666666544 455666666 8899999732 23456666666443
Q ss_pred CCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc---cccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEE
Q 005140 318 GVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID---KKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~ 392 (712)
+ .+.|||.....|+++. -+.|++|...++.-.. ....|...|.+++|||.. ..+++ ++.|+.++||
T Consensus 215 ---y-~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS-----cS~DgsIrIW 285 (440)
T KOG0302|consen 215 ---Y-GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS-----CSCDGSIRIW 285 (440)
T ss_pred ---e-eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEe-----eecCceEEEE
Confidence 2 5899983222466666 7889999988765321 223477789999999985 45566 7889999988
Q ss_pred EEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
.......+.....+.+......+.|+..-.+|+++.++++ +.||+|+.-......-.+.-|..+|+++.|+
T Consensus 286 DiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt---------~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 286 DIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT---------LSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred EecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce---------EEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 8776644433333556666667799998889999999988 8999998754333334566699999999999
Q ss_pred eC-CCEEEEEEcCCCCCeEEEEEeec
Q 005140 473 PK-GHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 473 p~-g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
|. ...|++++.|. +|.|||+..
T Consensus 357 p~e~s~iaasg~D~---QitiWDlsv 379 (440)
T KOG0302|consen 357 PHEDSVIAASGEDN---QITIWDLSV 379 (440)
T ss_pred cccCceEEeccCCC---cEEEEEeec
Confidence 94 56677777777 899999964
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-14 Score=126.84 Aligned_cols=291 Identities=14% Similarity=0.198 Sum_probs=179.6
Q ss_pred eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 249 MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 249 ~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
.+-++..|+++.|-.+++ |.+|... |.|++|++.+.+.+..+..+.... +. .++-.|
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~----------G~V~~w~lqt~r~~~~~r~~g~~~----------it--~lq~~p 66 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSV----------GIVKMWVLQTERDLPLIRLFGRLF----------IT--NLQSIP 66 (323)
T ss_pred eccccchheehhhccchh-hhccccc----------ceEEEEEeecCccchhhhhhccce----------ee--ceeecC
Confidence 333455699999988876 8888888 999999999998888888544332 01 355566
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceeccccccccc--CeeeEEECCCCC---eEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE--NVMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
++ .+.+-+ |..+.+|++..+..+...++... +..-+++++.++ .++.+ +..++. . +...+.+....+
T Consensus 67 -~d-~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y-p~rgsd-e---~h~~D~g~~tqv 139 (323)
T KOG0322|consen 67 -ND-SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY-PSRGSD-E---THKQDGGDTTQV 139 (323)
T ss_pred -Cc-chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec-CCcccc-h---hhhhccCcccee
Confidence 54 455555 99999999986544322221111 122223333322 12221 111100 0 111121111111
Q ss_pred eee---eee-eecceeEEEC-cCCCEE--EEEEcccccccccccccEEEEEEecCCcce-------eEEEecCCCCceEE
Q 005140 403 RQK---NLF-SVSDCKMYWQ-SSGDYL--AVKVDRYTKTKKSTYTGFELFRIKERDIPI-------EVLELDNKNDKIIA 468 (712)
Q Consensus 403 ~~~---~~~-~~~~~~~~~s-~~g~~l--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------~~~~l~~h~~~v~~ 468 (712)
... ... ........|. ..++++ +++...+ .+.+|++......+ .......|..+|.+
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg---------hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG---------HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCC---------eEEEEEccCCceeeccccccccccchhhccCccee
Confidence 100 000 0111122222 234433 3333333 37899988742211 11123368899999
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
+.+.+.-..=++++.+. .+..|+++...+.........+.+..+..+.+-||++.+++++. |+.|++|+.+++.
T Consensus 211 ldyas~~~rGisgga~d---kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW---D~RiRVyswrtl~ 284 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADD---KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW---DHRIRVYSWRTLN 284 (323)
T ss_pred eeechhhcCCcCCCccc---cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc---CCcEEEEEeccCC
Confidence 99987555545555544 78889887544433333455566667899999999999999999 9999999999998
Q ss_pred eeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 549 TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 549 ~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.++. .|...|++++|+|+...+|.++. |..|.+|++
T Consensus 285 pLAVLkyHsagvn~vAfspd~~lmAaask-----D~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHSAGVNAVAFSPDCELMAAASK-----DARISLWKL 322 (323)
T ss_pred chhhhhhhhcceeEEEeCCCCchhhhccC-----CceEEeeec
Confidence 8764 78899999999999999999999 999999985
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-13 Score=131.61 Aligned_cols=198 Identities=20% Similarity=0.299 Sum_probs=134.3
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
+++|++ +|..+++++ ||+++||+.++...+.....|...|.++.|||||++|++ -+.+ .++||..+. ...
T Consensus 149 ~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~las-----ig~d-~~~VW~~~~--g~~ 219 (398)
T KOG0771|consen 149 VVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLAS-----IGAD-SARVWSVNT--GAA 219 (398)
T ss_pred EEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEE-----ecCC-ceEEEEecc--Cch
Confidence 689999 999999999 999999999988877666677888999999999999999 5555 667665432 211
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC---CE-
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG---HR- 477 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g---~~- 477 (712)
+..+..+ ..+.....+.|+.++ .+
T Consensus 220 ~a~~t~~----------------------------------------------------~k~~~~~~cRF~~d~~~~~l~ 247 (398)
T KOG0771|consen 220 LARKTPF----------------------------------------------------SKDEMFSSCRFSVDNAQETLR 247 (398)
T ss_pred hhhcCCc----------------------------------------------------ccchhhhhceecccCCCceEE
Confidence 1111100 001112222333322 11
Q ss_pred EEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee---ec
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---TA 553 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---~~ 553 (712)
+++....+ ..|..|++.......-...-+.+. ...+++++.|++|++++.|+. +|.|.|++..+.+.+. ..
T Consensus 248 laa~~~~~--~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~---dGsVai~~~~~lq~~~~vk~a 322 (398)
T KOG0771|consen 248 LAASQFPG--GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM---DGSVAIYDAKSLQRLQYVKEA 322 (398)
T ss_pred EEEecCCC--CceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc---CCcEEEEEeceeeeeEeehhh
Confidence 12211222 145555554322210011111222 237899999999999999998 9999999998777655 47
Q ss_pred cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 554 EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 554 ~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
|...|+.+.|+||.+++++.+. ++...|..+..
T Consensus 323 H~~~VT~ltF~Pdsr~~~svSs-----~~~~~v~~l~v 355 (398)
T KOG0771|consen 323 HLGFVTGLTFSPDSRYLASVSS-----DNEAAVTKLAV 355 (398)
T ss_pred heeeeeeEEEcCCcCccccccc-----CCceeEEEEee
Confidence 8899999999999999999888 89999888764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-13 Score=124.93 Aligned_cols=309 Identities=12% Similarity=0.145 Sum_probs=176.6
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee-ecCCCeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR-YAHPQVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~-~~~~~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
.+..++|++.=.-+|++..|. |++|+-..+...+.+ ....+|.+++|-|.+ +-|+.+... -|.||.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-----------gIciW~ 168 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-----------GICIWS 168 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-----------eeEEEE
Confidence 456789998666677777777 789988722222222 234469999999965 567777766 489998
Q ss_pred ccC-C---ceeeeccCCCccccc-CCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCee
Q 005140 292 VRT-G---KVMRDFKGSADEFAV-GGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 292 ~~~-g---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
... + +.++-...+...+.. .++..|+ +++|.+ ||..+++++ +..|.|||.+++..+.-.....+++.
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVt-----smqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVT-----SMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS 242 (445)
T ss_pred cCcccccccccccccccchhheeCCCCceee-----EEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence 632 1 112211222222110 0111112 799999 999999998 89999999999887765556677899
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
-+.|||||.+|.. +.-|...++|.-. .................-.|+|.|++|++...... .+
T Consensus 243 lLkwSPdgd~lfa-----At~davfrlw~e~--q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp----------~l 305 (445)
T KOG2139|consen 243 LLKWSPDGDVLFA-----ATCDAVFRLWQEN--QSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP----------RL 305 (445)
T ss_pred eEEEcCCCCEEEE-----ecccceeeeehhc--ccceecceeccCCceeeeeecCCCCEEEEEEcCCc----------eE
Confidence 9999999999987 5567777766221 11100111112223333468888888877665433 45
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCC
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 524 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 524 (712)
|.+.-.+.+. ...-.++.-. .+-+-|+..-... .-..+-.+.+.+++|.|.|
T Consensus 306 ysl~f~~~~~---------------------~~~~~~~~k~---~lliaDL~e~ti~----ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 306 YSLTFDGEDS---------------------VFLRPQSIKR---VLLIADLQEVTIC----AGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred EEEeecCCCc---------------------cccCccccee---eeeeccchhhhhh----cCcccccCccceeeECCCC
Confidence 5543221110 0000000001 2233343211100 0122335578899999999
Q ss_pred CeEEEEeccC-----CCceEEEEECCcceeeee-----ccccceeeEEECC---CCCEEEEEEccceeccccEEEEEec
Q 005140 525 RFIVLAGLKG-----FNGQLEFYNVDELETMAT-----AEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 525 ~~l~~~~~~~-----~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.+|++.-.+. ..+.|.+||....-.+.. ........++|+| +|+.|..+-+ .|.+.-|.+.
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs-----TGriq~ypl~ 431 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS-----TGRIQRYPLT 431 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEec-----cCceEeeeeE
Confidence 9999987643 123456677664322221 1112234455655 5666666655 5777777654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-13 Score=140.54 Aligned_cols=247 Identities=14% Similarity=0.202 Sum_probs=153.2
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
.|.++|....... ........+....|||||+.|++... .++...||++++.+.+...... .......+.|+|+
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~wSPDG~~La~~s~----~~g~~~L~~~dl~tg~~~~lt~-~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPAWSPDGRKLAYVSF----ENRKAEIFVQDIYTQVREKVTS-FPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCceECCCCCEEEEEEe----cCCCcEEEEEECCCCCeEEecC-CCCCcCCeeECCC
Confidence 5666676543321 11122345788999999999987432 3445689999987654322211 1222335689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.|++...... ...||.++..+... ..+..+.......+|+|||++|++.+..+....|+++++.++..
T Consensus 273 G~~La~~~~~~g--------~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 273 GKKLALVLSKDG--------QPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCEEEEEEeCCC--------CeEEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999987654321 24566665444333 23444455667899999999999887654434677777755432
Q ss_pred cCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceec
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
..+. ..+......+|||||++|++.+.......|.++|+.+++..............|+|||++|+..+.. ..
T Consensus 343 ----~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~--~g 415 (448)
T PRK04792 343 ----SRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY--QG 415 (448)
T ss_pred ----EEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec--CC
Confidence 2222 2333345679999999998876532223567788887654332222223356899999999888762 00
Q ss_pred cccEEEEEecCceeeee--cccceeeeEEecC
Q 005140 581 ENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 581 d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
...+.+++.+|...... +.+.+...+|+|.
T Consensus 416 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 416 KQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 12367778888766554 3356788899984
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-12 Score=139.12 Aligned_cols=258 Identities=12% Similarity=0.060 Sum_probs=153.0
Q ss_pred EEcCCCcEEEEEecCc----eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 220 QWSPLGTYLATVHRQG----AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 220 ~~Spdg~~lat~~~~~----i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
.|+....|+......+ +.++|..+...+........+.+..|||||++|+..+... ....|++||+.+|
T Consensus 180 ~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~-------g~~~L~~~dl~tg 252 (448)
T PRK04792 180 AFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN-------RKAEIFVQDIYTQ 252 (448)
T ss_pred cccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC-------CCcEEEEEECCCC
Confidence 3444444444433322 4566776333333333334588999999999999876541 1147999999887
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CC--eEEEEEcCCceecccccccccCeeeEEECCC
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPT 371 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (712)
+............ .+.||| ||+.|+... ++ .|.++++.++.... ...+.......+|+||
T Consensus 253 ~~~~lt~~~g~~~--------------~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpD 316 (448)
T PRK04792 253 VREKVTSFPGING--------------APRFSP-DGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPD 316 (448)
T ss_pred CeEEecCCCCCcC--------------CeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCC
Confidence 6532221111111 479999 999887654 55 47777887665432 2222234567899999
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 451 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 451 (712)
|+.|++.. ..++...||.++..+.+.... ...........|+|+|++|++...... ...+|.++..+
T Consensus 317 G~~I~f~s----~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g--------~~~I~~~dl~~ 383 (448)
T PRK04792 317 GKSLIFTS----ERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNG--------KFNIARQDLET 383 (448)
T ss_pred CCEEEEEE----CCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCC--------ceEEEEEECCC
Confidence 99988742 234556888888876543221 111122234589999999988765422 24566665444
Q ss_pred cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCceeEEEEccC
Q 005140 452 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPS 523 (712)
Q Consensus 452 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spd 523 (712)
.....+. . .......+|+|+|+.|++.+.++....+.+++.... ....+ ....+..++|||-
T Consensus 384 g~~~~lt--~-~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-------~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 384 GAMQVLT--S-TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-------FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCeEEcc--C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-------ceEECcCCCCCcCCCccCCC
Confidence 3332222 1 122335689999999999887655445777776322 12223 2345678889883
|
|
| >PLN03134 glycine-rich RNA-binding protein 4; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=125.19 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=73.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+++|||+|||. +..+++|+++|++||.|.. +.|+.|+.|+++||||||+|+++++|++|++.|||..+++
T Consensus 32 ~~~~~lfVgnL~~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 32 LMSTKLFIGGLSW------GTDDASLRDAFAHFGDVVD--AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHhcCCCeEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3578999999997 4559999999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .++|....
T Consensus 104 r-~l~V~~a~ 112 (144)
T PLN03134 104 R-HIRVNPAN 112 (144)
T ss_pred E-EEEEEeCC
Confidence 5 78877643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-12 Score=135.52 Aligned_cols=248 Identities=10% Similarity=0.038 Sum_probs=142.3
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCE--EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKY--LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~--l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
+.+.|.++...+..+.....+.+..|||||+. ++..+... +...|.+.++.+|+..+.........
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-------g~~~I~~~~l~~g~~~~lt~~~g~~~----- 234 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-------GVPKIFLGSLENPAGKKILALQGNQL----- 234 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC-------CCceEEEEECCCCCceEeecCCCCcc-----
Confidence 44556663333333333334788999999986 33233321 11478999998776433222222222
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec--CC--e--EEEEEcCCce--ecccccc-cccCeeeEEECCCCCeEEEEeecCCC
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG--KN--M--ISVYETESFT--LIDKKSL-KVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~--d~--~--i~iwd~~~~~--~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
..+||| ||+.|+... +| . +.+|++..+. ....... ........+|||||+.|++.. .
T Consensus 235 ---------~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s----~ 300 (428)
T PRK01029 235 ---------MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS----N 300 (428)
T ss_pred ---------ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE----C
Confidence 479999 999998766 23 2 3346665431 1111111 112346789999999998742 1
Q ss_pred CCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 385 GNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 385 ~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
.++...||++++.. ................+.|+|+|+.|++...... ...+.+|++.. .... .+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g------~~~I~v~dl~~--g~~~--~Lt~~~ 370 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG------VRQICVYDLAT--GRDY--QLTTSP 370 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC------CcEEEEEECCC--CCeE--EccCCC
Confidence 34556788887643 2222222222223346789999999998776432 12244554433 3222 232233
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCC
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 524 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 524 (712)
..+.++.|+|||+.|++....+....|.++++.++.. ..+.. ....+...+|||-.
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~----~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT----RKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeec-CCCcccCceecCCC
Confidence 4667899999999999877654444788888865442 23332 23346788999864
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=148.52 Aligned_cols=271 Identities=14% Similarity=0.181 Sum_probs=186.2
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.|+.|...|.|+++|+.| ..++||...++.++.+..+|...++ .++.+. +.
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd----------~lvKiwS~et~~~lAs~rGhs~dit-------------dlavs~-~n 244 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDD----------RLVKIWSMETARCLASCRGHSGDIT-------------DLAVSS-NN 244 (1113)
T ss_pred hhhheeeeeeccccceEeecCcc----------ceeeeeeccchhhhccCCCCccccc-------------hhccch-hh
Confidence 34459999999999999999999 8999999999999999999998874 577787 88
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee--
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF-- 408 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-- 408 (712)
.++|+++ |..|++|.++++.++.....|.+.|+.++|+|-. . .+.++.+++|.|+......+....-+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s-----ss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S-----SSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c-----CCCCCceEeccccccccccCCCCCCccc
Confidence 8889888 9999999999999998888999999999999965 3 56899999999984333211111111
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPR 487 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~ 487 (712)
..-.+.+.+...|..+++++.++.. ..|.+.. +..|...+.-+..+.+. .+.+++-.+-
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea---------~n~e~~~---------l~~~~~~lif~t~ssd~~~~~~~ar~~~-- 375 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEA---------RNHEFEQ---------LAWRSNLLIFVTRSSDLSSIVVTARNDH-- 375 (1113)
T ss_pred ccceeeeeccccccccccccCCccc---------ccchhhH---------hhhhccceEEEeccccccccceeeeeee--
Confidence 1112233455566666666665541 1121110 00111111111111122 2222233333
Q ss_pred CeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEE-EEeccCCCceEEEEECCcceeeee--ccccceeeEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVE 562 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~ 562 (712)
.+.+|++.++. +.+.+.+ +.+..+.++|-...++ +++. ||...|||+-.+..+.. ..++.+.+.+
T Consensus 376 -~~~vwnl~~g~------l~H~l~ghsd~~yvLd~Hpfn~ri~msag~---dgst~iwdi~eg~pik~y~~gh~kl~d~k 445 (1113)
T KOG0644|consen 376 -RLCVWNLYTGQ------LLHNLMGHSDEVYVLDVHPFNPRIAMSAGY---DGSTIIWDIWEGIPIKHYFIGHGKLVDGK 445 (1113)
T ss_pred -Eeeeeecccch------hhhhhcccccceeeeeecCCCcHhhhhccC---CCceEeeecccCCcceeeecccceeeccc
Confidence 57788886654 3444433 3678899999776555 5666 99999999987766553 3467788899
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEec
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
||+||..++.... -|.++|....
T Consensus 446 FSqdgts~~lsd~-----hgql~i~g~g 468 (1113)
T KOG0644|consen 446 FSQDGTSIALSDD-----HGQLYILGTG 468 (1113)
T ss_pred cCCCCceEecCCC-----CCceEEeccC
Confidence 9999999888777 6788887654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=147.65 Aligned_cols=278 Identities=13% Similarity=0.165 Sum_probs=187.8
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
.+..+-+|...|+|+.|...|.|+++|+.+. ++||..+ +..++... +|. .|+.++.+.+...+++++.|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D------- 253 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVSSNNTMIAAASND------- 253 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCCCccccchhccchhhhhhhhcccC-------
Confidence 3445678999999999999999999999999 7799988 77777665 355 49999999999999999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceec--cccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLI--DKKSLK 359 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~--~~~~~~ 359 (712)
..|++|-+.+|.++..+.+|.+.++ +++||| -- +++.||++++||.. ...+ ......
T Consensus 254 ---~vIrvWrl~~~~pvsvLrghtgavt-------------aiafsP-~~---sss~dgt~~~wd~r-~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 254 ---KVIRVWRLPDGAPVSVLRGHTGAVT-------------AIAFSP-RA---SSSDDGTCRIWDAR-LEPRIYVPRPLK 312 (1113)
T ss_pred ---ceEEEEecCCCchHHHHhcccccee-------------eeccCc-cc---cCCCCCceEecccc-ccccccCCCCCC
Confidence 9999999999999999999998875 799999 32 33449999999987 1111 000011
Q ss_pred ---ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc--cc
Q 005140 360 ---VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT--KT 434 (712)
Q Consensus 360 ---~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~--~~ 434 (712)
..-+..+.|...+..+++ ++.++....|.+..-. |...+-.++....+.. ..
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~T-----gs~d~ea~n~e~~~l~------------------~~~~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLT-----GSRDGEARNHEFEQLA------------------WRSNLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred cccccceeeeecccccccccc-----ccCCcccccchhhHhh------------------hhccceEEEeccccccccce
Confidence 112555666666666666 6667666665544322 2222211111111100 00
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeCCC
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK 513 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 513 (712)
....+..+.+|++..... ...+.+|...+..+.++|-...++... .|| ...|||+-.+... .+......
T Consensus 370 ~ar~~~~~~vwnl~~g~l---~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg---st~iwdi~eg~pi----k~y~~gh~ 439 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQL---LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG---STIIWDIWEGIPI----KHYFIGHG 439 (1113)
T ss_pred eeeeeeEeeeeecccchh---hhhhcccccceeeeeecCCCcHhhhhccCCC---ceEeeecccCCcc----eeeecccc
Confidence 000011144555543211 123457889999999999777776554 477 8999999765532 22233333
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
.+..-+||+||..+++... -|.++|.....+
T Consensus 440 kl~d~kFSqdgts~~lsd~---hgql~i~g~gqs 470 (1113)
T KOG0644|consen 440 KLVDGKFSQDGTSIALSDD---HGQLYILGTGQS 470 (1113)
T ss_pred eeeccccCCCCceEecCCC---CCceEEeccCCC
Confidence 5677899999999988776 789999877643
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-12 Score=135.89 Aligned_cols=261 Identities=17% Similarity=0.305 Sum_probs=165.9
Q ss_pred eEEeecccCcceeeeecCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCce--eeecc----CCCcc
Q 005140 236 AAVWGGANTFNRLMRYAHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFK----GSADE 307 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~--~~~~~----~~~~~ 307 (712)
+.||++.........+..+ .|.++.|+|.. .+||.|..+ |+|.+||++.+.. ...+. .|...
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~----------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYN----------GQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccC----------ceEEEEEccCCCCCCCcccccccccCCcC
Confidence 5699998554555555544 59999999965 556666666 9999999977664 22222 12222
Q ss_pred cccCCCCCcCCCCcCeEEecCCCC--CEEEEec-CCeEEEEEcCCcee------ccccc------ccccCeeeEEECCCC
Q 005140 308 FAVGGTGGVAGVSWPVFRWGGGKD--KYFAKLG-KNMISVYETESFTL------IDKKS------LKVENVMDFSWSPTD 372 (712)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~s~~dg--~~la~~~-d~~i~iwd~~~~~~------~~~~~------~~~~~v~~~~~sp~~ 372 (712)
+ . .+.|.. +. .-|++++ ||.|..|+++.... ..... ....+++.++|.|..
T Consensus 294 v--------~-----~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 294 V--------T-----AVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred e--------E-----EEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 2 1 567765 33 2366665 99999998764321 11111 122358889999875
Q ss_pred CeEEEEeecCCCCCCCeEE-EEEecCCc-----cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEE
Q 005140 373 PIISLFVPELGGGNQPARV-SLVQIPSK-----EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 446 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i-~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 446 (712)
....+. |+..|.+.- ........ +.......+......+.++|=+..++..+.|.+ ++||.
T Consensus 360 p~~FiV----GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~---------vriWs 426 (555)
T KOG1587|consen 360 PNHFIV----GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT---------VRIWS 426 (555)
T ss_pred CceEEE----EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce---------eEecc
Confidence 433332 444444332 11222111 122233445556666788998876666666766 78888
Q ss_pred EecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccC
Q 005140 447 IKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPS 523 (712)
Q Consensus 447 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spd 523 (712)
..-...|. +.+..+...+++++|||.- ..|+++..+| .|.|||+...... ++.+.. ....+.+.|+++
T Consensus 427 ~~~~~~Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G---~l~iWDLl~~~~~----Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 427 EDVIASPL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDG---NLDIWDLLQDDEE----PVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred ccCCCCcc--hhhhhccceeeeeEEcCcCceEEEEEcCCC---ceehhhhhccccC----CcccccccccccceeecCCC
Confidence 76444443 3333456779999999954 5677777788 9999999654332 333332 334578999999
Q ss_pred CCeEEEEeccCCCceEEEEECC
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|+.|++|.. .|.+.+|++.
T Consensus 498 g~~lavGd~---~G~~~~~~l~ 516 (555)
T KOG1587|consen 498 GKLLAVGDA---NGTTHILKLS 516 (555)
T ss_pred CcEEEEecC---CCcEEEEEcC
Confidence 999999998 9999999986
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=132.60 Aligned_cols=193 Identities=17% Similarity=0.274 Sum_probs=134.9
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
.+++|+++|+.||+++.|| ++||+++ +...+... +|..|.++.|||||++|++.+.+ ..+||++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-----------~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-----------SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-cchhhhhhHhhcCccccceeCCCCcEEEEecCC-----------ceEEEEec
Confidence 6799999999999999999 8899988 66655554 46679999999999999999998 58899999
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC---C-EEEEec--CCeEEEEEcCCce-----ecccccccccC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD---K-YFAKLG--KNMISVYETESFT-----LIDKKSLKVEN 362 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg---~-~la~~~--d~~i~iwd~~~~~-----~~~~~~~~~~~ 362 (712)
+|..+........... +..++|+. |+ . ++++.. .+.|..|++.... ...+.......
T Consensus 216 ~g~~~a~~t~~~k~~~-----------~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEM-----------FSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCchhhhcCCcccchh-----------hhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 9977666653222111 22678888 77 3 333333 5666666654221 22233334557
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
|.+++.|++|+++++ |+.++.+.|+. ..+.+
T Consensus 284 iSsl~VS~dGkf~Al-----GT~dGsVai~~--~~~lq------------------------------------------ 314 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLAL-----GTMDGSVAIYD--AKSLQ------------------------------------------ 314 (398)
T ss_pred ceeEEEcCCCcEEEE-----eccCCcEEEEE--eceee------------------------------------------
Confidence 999999999999998 66665554432 11100
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
.++ +.-..|...|+.+.|+|+.++++..+.+. ...+..+.
T Consensus 315 ~~~-----------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l~ 354 (398)
T KOG0771|consen 315 RLQ-----------YVKEAHLGFVTGLTFSPDSRYLASVSSDN---EAAVTKLA 354 (398)
T ss_pred eeE-----------eehhhheeeeeeEEEcCCcCcccccccCC---ceeEEEEe
Confidence 111 11126788999999999999999988877 66666663
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-12 Score=137.27 Aligned_cols=247 Identities=13% Similarity=0.179 Sum_probs=153.5
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
.|.++|...+... ....+...+....|||||+.|++... .++...||++++.+.+...... .......+.|+|+
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~~~~~p~wSpDG~~la~~s~----~~~~~~l~~~~l~~g~~~~l~~-~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSREPILSPRWSPDGKRIAYVSF----EQKRPRIFVQNLDTGRREQITN-FEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCCce-EEecCCCceeeeeECCCCCEEEEEEc----CCCCCEEEEEECCCCCEEEccC-CCCCcCCeEECCC
Confidence 4666676644322 12223345788999999999987422 2345679999887654322111 1222334789999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.|++...... ...||.++..+... ..+..+........|+|||+.|++.+...+...|+++++.++..
T Consensus 254 G~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 254 GSKLAFVLSKDG--------NPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCEEEEEEccCC--------CceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999987654321 13455554433332 23444555667789999999999887654444777778755432
Q ss_pred cCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceec
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
..+. ..+.......|||||++|+..........|.+||+.+++.....+........|+|||++|+.++.. ..
T Consensus 324 ----~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~--~g 396 (430)
T PRK00178 324 ----ERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ--QG 396 (430)
T ss_pred ----EEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec--CC
Confidence 1222 2233345688999999999876522133688899987654432222233467999999999988762 00
Q ss_pred cccEEEEEecCceeeee--cccceeeeEEecC
Q 005140 581 ENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 581 d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
...+.++++.|...... +.+.+...+|+|.
T Consensus 397 ~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 397 RGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 23466777877655433 3356788899885
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-12 Score=117.76 Aligned_cols=255 Identities=17% Similarity=0.262 Sum_probs=164.7
Q ss_pred ccccCCCcccceEEEcCC-CcEEEEEecC--------ceEEeecccC--------cceeeee---cCCCeeEEEecCCCC
Q 005140 207 PVYKRSYWTESFVQWSPL-GTYLATVHRQ--------GAAVWGGANT--------FNRLMRY---AHPQVKLIDFSPGEK 266 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spd-g~~lat~~~~--------~i~iw~~~~~--------~~~~~~~---~~~~v~~i~~Spdg~ 266 (712)
..|..|.+.|..++=||- .+.|+|+..+ ++.||.+... .+.+..+ ++..|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 356778888999999994 5566665431 2569987621 2223333 244699999999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEecCCeEEE
Q 005140 267 YLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLGKNMISV 344 (712)
Q Consensus 267 ~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~d~~i~i 344 (712)
.|++.... .|.+|++..+.. +..+......- .. ..+..-+|||+ +|..+++.+++++..
T Consensus 137 klasm~dn-----------~i~l~~l~ess~~vaev~ss~s~e------~~--~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 137 KLASMDDN-----------NIVLWSLDESSKIVAEVLSSESAE------MR--HSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred eeEEeccC-----------ceEEEEcccCcchheeeccccccc------cc--ceecccccCCCCccceEEEeCCCcEEE
Confidence 99988744 799999987765 33333221110 00 11225689984 999999999999999
Q ss_pred EEcCCceecccc-cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE
Q 005140 345 YETESFTLIDKK-SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 345 wd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
||+.+++..... ..|...|.++.|+|+..++++. ++.++.++||
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt----~gDdgyvriW------------------------------- 242 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVT----CGDDGYVRIW------------------------------- 242 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEE----cCCCccEEEE-------------------------------
Confidence 999987755433 2455668999999987655442 4455554443
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeeccccc-
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHA- 501 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~- 501 (712)
+.+....|+ .++++|.-.|.++.|+|.- +.+++++.|. .|.+|...+-...
T Consensus 243 ----------------------D~R~tk~pv--~el~~HsHWvW~VRfn~~hdqLiLs~~SDs---~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 243 ----------------------DTRKTKFPV--QELPGHSHWVWAVRFNPEHDQLILSGGSDS---AVNLSCASSVSSEQ 295 (370)
T ss_pred ----------------------eccCCCccc--cccCCCceEEEEEEecCccceEEEecCCCc---eeEEEecccccccc
Confidence 333333332 5677899999999999954 5556666677 7888876432200
Q ss_pred -----------------Ccee-----EEEEeCCC--ceeEEEEccCCCeEE-EEeccCCCceEEEEECC
Q 005140 502 -----------------GRVS-----KLTTLKGK--QANALFWSPSGRFIV-LAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 502 -----------------~~~~-----~~~~~~~~--~v~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~ 545 (712)
.+.+ .+.++..| .|.+++||.-..+++ +-++ ||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY---DGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY---DGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc---CceEEeecCC
Confidence 0111 12233333 688999988766654 4566 8888776554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-12 Score=134.58 Aligned_cols=243 Identities=12% Similarity=0.066 Sum_probs=145.2
Q ss_pred eEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCC
Q 005140 236 AAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG 314 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~ 314 (712)
+.++|.. +....... +...+.++.|||||++|++.+... ....|.+|++.+|+..+.. .......
T Consensus 181 l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~-------~~~~l~~~~l~~g~~~~l~-~~~g~~~----- 246 (430)
T PRK00178 181 LQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ-------KRPRIFVQNLDTGRREQIT-NFEGLNG----- 246 (430)
T ss_pred EEEECCC-CCCceEEecCCCceeeeeECCCCCEEEEEEcCC-------CCCEEEEEECCCCCEEEcc-CCCCCcC-----
Confidence 5567777 33322222 334589999999999999876541 1247999999888654322 2111110
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec--CC--eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~--d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
.+.||| ||+.|+... ++ .|.+|++.++.... ...+........|+|+|+.|++.. ..++...
T Consensus 247 --------~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s----~~~g~~~ 312 (430)
T PRK00178 247 --------APAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTS----DRGGKPQ 312 (430)
T ss_pred --------CeEECC-CCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEE----CCCCCce
Confidence 479999 999887543 33 68888988765432 212222356689999999988742 1344567
Q ss_pred EEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
|+.+++...+... ............|+|+|++|++...... ...||.++..+.....+.- ........
T Consensus 313 iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~--------~~~l~~~dl~tg~~~~lt~---~~~~~~p~ 380 (430)
T PRK00178 313 IYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDG--------NFHVAAQDLQRGSVRILTD---TSLDESPS 380 (430)
T ss_pred EEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCC--------ceEEEEEECCCCCEEEccC---CCCCCCce
Confidence 8888876654221 1111122234679999999998765421 1234444433333222222 22334578
Q ss_pred EeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 471 WEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
|+|+|+.+++.+.+++...|.++++..... ..+. ...+.+..++|||-
T Consensus 381 ~spdg~~i~~~~~~~g~~~l~~~~~~g~~~----~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 381 VAPNGTMLIYATRQQGRGVLMLVSINGRVR----LPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCce----EECc-CCCCCcCCCccCCC
Confidence 999999999988765544677777643211 0121 22345677888873
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-12 Score=134.17 Aligned_cols=242 Identities=16% Similarity=0.213 Sum_probs=144.3
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.++|.. |...+.+..+...+ + .++||| ||++|+.+. ...|.+|++.++...... ...
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~------------~-~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~ 233 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPI------------L-SPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFP 233 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCce------------e-cccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCC
Confidence 578898874 44444454444322 1 478999 999999876 247999999876533211 122
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+..++|+|+|+.|++. .+.++...|+.+++.+..
T Consensus 234 ~~~~~~~~spDg~~l~~~----~~~~~~~~i~~~d~~~~~---------------------------------------- 269 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVS----LSKDGNPDIYVMDLDGKQ---------------------------------------- 269 (417)
T ss_pred CCccceEECCCCCEEEEE----ECCCCCccEEEEECCCCC----------------------------------------
Confidence 235567888888877652 112233344444432211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
. ..+..+.......+|+|+|++|++.+..+....|+++++.++.. ..+ .........+.|
T Consensus 270 -------------~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~~l-~~~~~~~~~~~~ 329 (417)
T TIGR02800 270 -------------L--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----RRL-TFRGGYNASPSW 329 (417)
T ss_pred -------------E--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEe-ecCCCCccCeEE
Confidence 0 11112233344568999999998887654444677777754331 122 223445678899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeec--
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL-- 598 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~-- 598 (712)
+|+|++|++++.......|.+||+.++.............+.|+|||++|++++.. .....+.+.+..|.......
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~--~~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTR--GGRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeC--CCcEEEEEEECCCceeeECCCC
Confidence 99999999987622123789999887554333333344567999999999988872 00124556666676554442
Q ss_pred ccceeeeEEe
Q 005140 599 KDHFFQFLWR 608 (712)
Q Consensus 599 ~~~i~~~~w~ 608 (712)
.+.+..+.|+
T Consensus 408 ~g~~~~~~ws 417 (417)
T TIGR02800 408 NGDVREPAWS 417 (417)
T ss_pred CCCcCCCCCC
Confidence 2345555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=132.40 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=138.2
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
+.++|..+........+...+.++.|||||++|+++.... ....|++||+.+++...... +....
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-------~~~~i~v~d~~~g~~~~~~~-~~~~~------- 236 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES-------GKPEIYVQDLATGQREKVAS-FPGMN------- 236 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC-------CCcEEEEEECCCCCEEEeec-CCCCc-------
Confidence 6677776222222222333488999999999999887551 11579999998886543222 22111
Q ss_pred cCCCCcCeEEecCCCCCEEEEec--C--CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG--K--NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~--d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
. .++|+| ||+.|+... + ..|.+|++.++.... ...+........|+|+|+.|++.. ...+...|
T Consensus 237 -----~-~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s----~~~g~~~i 304 (417)
T TIGR02800 237 -----G-APAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTS----DRGGSPQI 304 (417)
T ss_pred -----c-ceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEE----CCCCCceE
Confidence 1 479999 999777543 3 358888887654321 111222234567778777776521 11222244
Q ss_pred EEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 392 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+.++... .... .+..+...+..++|
T Consensus 305 y~~d~~~-----------------------------------------------------~~~~--~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 305 YMMDADG-----------------------------------------------------GEVR--RLTFRGGYNASPSW 329 (417)
T ss_pred EEEECCC-----------------------------------------------------CCEE--EeecCCCCccCeEE
Confidence 4433221 1111 11112344567789
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+|+|+++++++.+++...|.+|++.++. ...+.. ......+.|+|||++|++++.......+++.+........
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence 9999999998876544478888876532 112211 2234567899999999988763323457777766433221
Q ss_pred -eccccceeeEEEC
Q 005140 552 -TAEHFMATDVEWD 564 (712)
Q Consensus 552 -~~~~~~v~~~~~s 564 (712)
..+.+.+..++||
T Consensus 404 ~~~~~g~~~~~~ws 417 (417)
T TIGR02800 404 LPLGNGDVREPAWS 417 (417)
T ss_pred CCCCCCCcCCCCCC
Confidence 1223455556664
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=126.79 Aligned_cols=228 Identities=10% Similarity=0.080 Sum_probs=157.9
Q ss_pred eEEEEECCeeEEEecCCCCC--CCccc------------------ccCCCcccceEEEcCC-CcEEEEEecCc-eEEeec
Q 005140 184 QFVIRSGTDTEVLWNDARHL--KPEPV------------------YKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGG 241 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~--~~~~~------------------~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~ 241 (712)
-.+++.-+..+-+|+++-.. .|... -++|+..|.+++|... -..||+|+.|. |++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 34567777778899974221 11111 2478889999999875 45799999998 889999
Q ss_pred ccCcceeeeec-CCC-eeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcC
Q 005140 242 ANTFNRLMRYA-HPQ-VKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 242 ~~~~~~~~~~~-~~~-v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
. ++++...+. |.+ |+++.|+|. ..+|++|+.| ++|.+.|++.- ..-..++.....-
T Consensus 274 ~-~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D----------~~V~l~D~R~~~~s~~~wk~~g~VE--------- 333 (463)
T KOG0270|consen 274 D-TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD----------GTVALKDCRDPSNSGKEWKFDGEVE--------- 333 (463)
T ss_pred C-CCCcceehhhcCCceeEEEecCCCceEEEecccc----------ceEEeeeccCccccCceEEeccceE---------
Confidence 9 888888775 443 999999996 5799999999 99999998731 1111122111111
Q ss_pred CCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc-eecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEE
Q 005140 318 GVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~ 394 (712)
.+.|.|+....+.++. ||+++-+|++.. +.+.....|.++|.++++++.... +++ ++.++.+++|.+
T Consensus 334 -----kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t-----~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 334 -----KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST-----ASTDKVVKLWKF 403 (463)
T ss_pred -----EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee-----ccccceEEEEee
Confidence 4788883333444444 999999999864 778888889999999999998655 455 789999999999
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+..+.+.+..+.+.-...++++..|+-.++++...... .+++|++..
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~--------~~~vwd~~~ 450 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA--------VLRVWDIFT 450 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccc--------eEEEeeccc
Confidence 98887766655543333444556666655444332211 267777653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-10 Score=116.42 Aligned_cols=288 Identities=13% Similarity=0.202 Sum_probs=173.4
Q ss_pred ceEEeeccc-Ccc--eeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ce--eeecc-CCC
Q 005140 235 GAAVWGGAN-TFN--RLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KV--MRDFK-GSA 305 (712)
Q Consensus 235 ~i~iw~~~~-~~~--~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~--~~~~~-~~~ 305 (712)
+|.+|.++. ++. .+... .......++++|++++|.+..... ...+.|..|.+... .+ +.... ...
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~------~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS------GDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS------STTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc------cCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 577777631 222 22222 234588899999999999887751 11278889988653 32 22232 222
Q ss_pred cccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCC-ceeccccc-c------------cccCeeeEEEC
Q 005140 306 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES-FTLIDKKS-L------------KVENVMDFSWS 369 (712)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~-~~~~~~~~-~------------~~~~v~~~~~s 369 (712)
... .++.+| ++++|+.+. +|.|.++++.. +.+..... . ......++.++
T Consensus 88 ~p~--------------~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 88 SPC--------------HIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp CEE--------------EEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred CcE--------------EEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 222 588999 999998887 99999999985 43322210 1 12347899999
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceee---eee-eeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQ---KNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~---~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
|+++++++. .-+.-+|+.|++.... .+.. ..+ .......+.|+|+|+++++...... .+.+
T Consensus 153 pdg~~v~v~------dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~--------~v~v 218 (345)
T PF10282_consen 153 PDGRFVYVP------DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN--------TVSV 218 (345)
T ss_dssp TTSSEEEEE------ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT--------EEEE
T ss_pred CCCCEEEEE------ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC--------cEEE
Confidence 999988763 2233456666665433 1211 111 1223456789999999888665322 3677
Q ss_pred EEEecCCcceeEEE-ec---C-C--CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCce
Q 005140 445 FRIKERDIPIEVLE-LD---N-K--NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA 515 (712)
Q Consensus 445 ~~l~~~~~~~~~~~-l~---~-h--~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v 515 (712)
|++.........+. +. . . ......++++|||++|+++.... +.|.+|+++...+ .+..+..+. +...
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g--~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATG--TLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTT--TEEEEEEEEESSSSE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCC--ceEEEEEEeCCCCCc
Confidence 77773222222211 11 1 1 12577899999999999887643 3899999954332 233444443 3456
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeeec---cccceeeEEE
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMATA---EHFMATDVEW 563 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~~---~~~~v~~~~~ 563 (712)
..++++|+|++|++++.. ++.|.+|+++ ++.+.... ......|+.|
T Consensus 295 r~~~~s~~g~~l~Va~~~--s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQD--SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEE-TTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cEEEEeCCCCEEEEEecC--CCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 889999999999998752 6789998764 66655442 3355566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-13 Score=123.84 Aligned_cols=148 Identities=16% Similarity=0.351 Sum_probs=106.5
Q ss_pred EEEEEeeCCCEEEEEEc---CCC----CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 467 IAFAWEPKGHRFAVIHG---DSP----RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~---d~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
..+.|+|+|++|++... +.. .....+|.++..... ...+..-...+|.+++|+|+|+.+++.. +..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceeeccCCCceEEEEECcCCCEEEEEE-ccCCccc
Confidence 46899999999988765 111 114566666443321 1122222234799999999999887664 2237799
Q ss_pred EEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeeecccceeeeEEecCCCCCCChh
Q 005140 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRTLKDHFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~~~~~i~~~~w~p~~~~l~s~~ 618 (712)
.|||++ ++.+...+...++.+.|||+|++|++++.. ...|.+.+||... ..+.......+..+.|+|+|++++++.
T Consensus 86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~--n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG--NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc--CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 999997 667777777788899999999999999862 1146799999974 455555556788999999999999876
Q ss_pred hH
Q 005140 619 KE 620 (712)
Q Consensus 619 ~d 620 (712)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 53
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-12 Score=125.48 Aligned_cols=239 Identities=17% Similarity=0.306 Sum_probs=144.1
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee------eeccCCCcccccCCCCCcCCCCcCeEEe---
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM------RDFKGSADEFAVGGTGGVAGVSWPVFRW--- 326 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 326 (712)
+....++-.|++|+..-.+ .+.+|+.+.+..+ +.+.+.. .. +-.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~-----------~lyv~~~~g~~~~~~pi~k~~y~gt~-P~--------------cHdfn~~ 179 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR-----------ELYVYSYRGAADLSKPIDKREYKGTS-PT--------------CHDFNSF 179 (636)
T ss_pred eeeccccCCCCEEEEecCC-----------eEEEEEccCcchhccchhhhcccCCC-Cc--------------eeccccc
Confidence 5566667778888877665 5889987643221 1122211 11 1122
Q ss_pred --cCCCC-CEEEEecCCeEEEEEcCCceecc----cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 327 --GGGKD-KYFAKLGKNMISVYETESFTLID----KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 327 --s~~dg-~~la~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+ .+ .+|+.-+-|.+++++........ ...+....|+++.|-|.+..+.++ +..++ .+++|+....
T Consensus 180 ~a~~-~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~----a~~sG--nlyly~~~~~ 252 (636)
T KOG2394|consen 180 TATP-KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLV----AHASG--NLYLYDKEIV 252 (636)
T ss_pred ccCC-CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEE----EEecC--ceEEeecccc
Confidence 22 33 24554557888888765422111 011223569999999976544432 12333 3444443100
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
.....-.....+++..+++......+ ...|+....+ ..+.|+.++|+|||++||
T Consensus 253 --------~~~t~p~~~~~k~~~~f~i~t~ksk~----------------~rNPv~~w~~--~~g~in~f~FS~DG~~LA 306 (636)
T KOG2394|consen 253 --------CGATAPSYQALKDGDQFAILTSKSKK----------------TRNPVARWHI--GEGSINEFAFSPDGKYLA 306 (636)
T ss_pred --------ccCCCCcccccCCCCeeEEeeeeccc----------------cCCccceeEe--ccccccceeEcCCCceEE
Confidence 01111111123455555554332211 0122222222 156899999999999999
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccc
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEH 555 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~ 555 (712)
+.+.|+ .++||+..+.. ++..++ -+...|++|||||+||++|+. |.-|.||.+..++++.. +|.
T Consensus 307 ~VSqDG---fLRvF~fdt~e------Llg~mkSYFGGLLCvcWSPDGKyIvtGGE---DDLVtVwSf~erRVVARGqGHk 374 (636)
T KOG2394|consen 307 TVSQDG---FLRIFDFDTQE------LLGVMKSYFGGLLCVCWSPDGKYIVTGGE---DDLVTVWSFEERRVVARGQGHK 374 (636)
T ss_pred EEecCc---eEEEeeccHHH------HHHHHHhhccceEEEEEcCCccEEEecCC---cceEEEEEeccceEEEeccccc
Confidence 999999 99999997644 222222 235799999999999999998 99999999999999886 677
Q ss_pred cceeeEEECC
Q 005140 556 FMATDVEWDP 565 (712)
Q Consensus 556 ~~v~~~~~sp 565 (712)
..|+.++|+|
T Consensus 375 SWVs~VaFDp 384 (636)
T KOG2394|consen 375 SWVSVVAFDP 384 (636)
T ss_pred cceeeEeecc
Confidence 8999999984
|
|
| >KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=109.88 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=72.7
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-+|+|||+||...+. |+.|.++|++.|.|.. |.|-+|+.+..+.|||||+|.++++|..|++.+||+.|+
T Consensus 33 ~r~S~tvyVgNlSfytt------EEqiyELFs~cG~irr--iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTT------EEQIYELFSKCGDIRR--IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred HhhcceEEEeeeeeeec------HHHHHHHHHhccchhe--eEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 45789999999997554 8899999999999999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
.+ ++.+-.
T Consensus 105 dr-~ir~D~ 112 (153)
T KOG0121|consen 105 DR-PIRIDW 112 (153)
T ss_pred cc-ceeeec
Confidence 86 666554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-10 Score=106.33 Aligned_cols=289 Identities=10% Similarity=0.107 Sum_probs=182.9
Q ss_pred EEEEEC---CeeEEEecCCCCCC--CcccccCCCcccceEEEcCCCcEEEEEecC----ceEEeeccc-Ccc--eeeeec
Q 005140 185 FVIRSG---TDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHRQ----GAAVWGGAN-TFN--RLMRYA 252 (712)
Q Consensus 185 ~~~~~~---~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~i~iw~~~~-~~~--~~~~~~ 252 (712)
|+.++. ...+..|++..... ....+-.+....+.++|+|++++|.++..+ +|..|.++. ++. .+.+..
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~ 85 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT 85 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence 444444 55666888752222 222334566778999999999999998766 266665552 122 333332
Q ss_pred CC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-Cceeee--ccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 253 HP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRD--FKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 253 ~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
.+ ....++++++|++|+++.... +.|.++-+.. |.+... +..|..... ...+..-......++
T Consensus 86 ~~g~~p~yvsvd~~g~~vf~AnY~~---------g~v~v~p~~~dG~l~~~v~~~~h~g~~p---~~rQ~~~h~H~a~~t 153 (346)
T COG2706 86 LPGSPPCYVSVDEDGRFVFVANYHS---------GSVSVYPLQADGSLQPVVQVVKHTGSGP---HERQESPHVHSANFT 153 (346)
T ss_pred cCCCCCeEEEECCCCCEEEEEEccC---------ceEEEEEcccCCccccceeeeecCCCCC---CccccCCccceeeeC
Confidence 22 258899999999999998772 7899998855 443221 111111100 000001001147899
Q ss_pred CCCCCEEEEec--CCeEEEEEcCCceecccccc---cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--
Q 005140 328 GGKDKYFAKLG--KNMISVYETESFTLIDKKSL---KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-- 400 (712)
Q Consensus 328 ~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-- 400 (712)
| ++++|++.. -..|.+|++..+.+...... ...+-+.+.|+|++++..+. .--++.+.+|.|+....+
T Consensus 154 P-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v----~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 154 P-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV----NELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred C-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEE----eccCCEEEEEEEcCCCceEE
Confidence 9 999999988 67899999997776543322 23458899999999876653 224667777777764322
Q ss_pred ceeeeee------eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceEEEEEee
Q 005140 401 ELRQKNL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEP 473 (712)
Q Consensus 401 ~~~~~~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp 473 (712)
.+..... .......++.+++|++|.+.-.... .+.+|.+...+.....+... .+......+.++|
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--------sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--------SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC--------eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence 2222211 1223445678999999987544322 37788888776654444432 2334478899999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
.|++|+++..++. +|.+|.++...+
T Consensus 301 ~g~~Liaa~q~sd--~i~vf~~d~~TG 325 (346)
T COG2706 301 SGRFLIAANQKSD--NITVFERDKETG 325 (346)
T ss_pred CCCEEEEEccCCC--cEEEEEEcCCCc
Confidence 9999999998774 799999876554
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=132.27 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=86.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+|.|||++||. +..|.+|.-+|++.|+|-+ +.|++|+.+|.+||||||+|.+.++|++||+.||+++|..
T Consensus 81 ~~G~EVfvGkIPr------D~~EdeLvplfEkiG~I~e--lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPR------DVFEDELVPLFEKIGKIYE--LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CCCceEEecCCCc------cccchhhHHHHHhccceee--EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 6899999999998 8889999999999999999 9999999999999999999999999999999999999954
Q ss_pred ceEEEEEe--ecccccccCCCCCCCCCC
Q 005140 137 AHIFAVNM--FDDFDKFMKVPDEWAPPE 162 (712)
Q Consensus 137 ~~~l~v~~--~~~~~~~~~~~~~~~~p~ 162 (712)
.+.|.|+. .+..-.+.++|..|....
T Consensus 153 GK~igvc~Svan~RLFiG~IPK~k~kee 180 (506)
T KOG0117|consen 153 GKLLGVCVSVANCRLFIGNIPKTKKKEE 180 (506)
T ss_pred CCEeEEEEeeecceeEeccCCccccHHH
Confidence 45666654 344666778998886543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-10 Score=112.35 Aligned_cols=284 Identities=10% Similarity=0.105 Sum_probs=162.6
Q ss_pred ceEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
.|.+.|.. +.+.+..+.... -..+ +||||+.|+.+..--.....+.....|.+||+.+++.++.+..+..+..+ .
T Consensus 28 ~v~ViD~~-~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--~ 103 (352)
T TIGR02658 28 QVYTIDGE-AGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--V 103 (352)
T ss_pred eEEEEECC-CCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--c
Confidence 38899999 888887776443 3334 99999999888771111111112268999999999999988865442100 0
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
+.-. + .+++|| ||++|.... ++.|.++|+.+++.+....... +..-+..+.++..+.+ .|+...
T Consensus 104 ~~~~---~-~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~-------~Dg~~~ 170 (352)
T TIGR02658 104 GTYP---W-MTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHC-------RDGSLA 170 (352)
T ss_pred cCcc---c-eEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEe-------ecCceE
Confidence 0000 1 489999 999888765 7999999999988775443311 1222223222222221 222222
Q ss_pred EEEEecCCccceeeeeeeeecc----eeEEECc-CCCEEEEEEcccccccccccccEEEEEEecCC----cceeEEEec-
Q 005140 391 VSLVQIPSKEELRQKNLFSVSD----CKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----IPIEVLELD- 460 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~----~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~l~- 460 (712)
...++...........++.... ....+.+ +|+++.+... +. +.+.++.... .+...+...
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~---------V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK---------IFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce---------EEEEecCCCcceecceeeeccccc
Confidence 2111111111111111111100 0002233 7777766554 33 3444432211 111111110
Q ss_pred ----CCCCceEEEEEeeCCCEEEEEEcC-------CCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC-eE
Q 005140 461 ----NKNDKIIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FI 527 (712)
Q Consensus 461 ----~h~~~v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~-~l 527 (712)
-+.+.+.-++++|+|+++.+.... .+.+.|.++|..+.+ .+..+. ++.+..+++||||+ +|
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k------vi~~i~vG~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK------RLRKIELGHEIDSINVSQDAKPLL 314 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe------EEEEEeCCCceeeEEECCCCCeEE
Confidence 012334459999999999885421 122479999987654 555555 66889999999999 66
Q ss_pred EEEeccCCCceEEEEECCcceeeeec
Q 005140 528 VLAGLKGFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 528 ~~~~~~~~dg~v~iwd~~~~~~~~~~ 553 (712)
++... . ++.|.++|..+++.+.+.
T Consensus 315 yvtn~-~-s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 315 YALST-G-DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeCC-C-CCcEEEEECcCCeEEeee
Confidence 66652 2 788999999999888775
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-10 Score=108.22 Aligned_cols=238 Identities=12% Similarity=0.203 Sum_probs=150.8
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeec--CCC--eeEEEecCCCCEEEEEc-CCCCCCCcCCCccEEEEE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA--HPQ--VKLIDFSPGEKYLVTYS-SHEPSNPRDANRVVINIF 290 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~--~~~--v~~i~~Spdg~~l~t~s-~d~~~~~~~~~~~~I~iw 290 (712)
..+++|..|-..++.+...|.+||+.+ -.+...+.. ..+ +.-+.| -.++||-.+ ... |+... ..|.||
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~-P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~---pky~p-NkviIW 80 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCD-PFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSR---PKYPP-NKVIIW 80 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecC-chhhhhhhccccCchhhhhHhh--hhceEEEecCCCC---CCCCC-ceEEEE
Confidence 345999999999999999999999998 444332222 222 333333 234554333 332 22223 479999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC-Cceeccccccc--ccCeeeEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLIDKKSLK--VENVMDFS 367 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~-~~~~~~~~~~~--~~~v~~~~ 367 (712)
|=...+++.++.-..... .+.+++ ..|+..-.+.|.||... +-+.+...... ..++.+++
T Consensus 81 DD~k~~~i~el~f~~~I~--------------~V~l~r---~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIK--------------AVKLRR---DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ecccCcEEEEEEecccee--------------eEEEcC---CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 966677777766554433 567766 67888889999999987 33333221111 11111111
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
-+-....||+ | +... +.+++.++
T Consensus 144 ~~~~k~~Laf--P----g~k~---------------------------------------------------GqvQi~dL 166 (346)
T KOG2111|consen 144 PTSNKSLLAF--P----GFKT---------------------------------------------------GQVQIVDL 166 (346)
T ss_pred CCCCceEEEc--C----CCcc---------------------------------------------------ceEEEEEh
Confidence 1111122221 1 1111 12344444
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----ceeEEEEccC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPS 523 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spd 523 (712)
...... ....+.+|...|.+++.+-+|..+|+++..|+ -|+|||..++. ++..+..+ .+.+++|||+
T Consensus 167 ~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT--LIRIFdt~~g~------~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 167 ASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGT--LIRIFDTEDGT------LLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred hhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcE--EEEEEEcCCCc------EeeeeecCCchheEEEEEeCCC
Confidence 332211 12446689999999999999999999999884 79999998776 55555522 5899999999
Q ss_pred CCeEEEEeccCCCceEEEEECCc
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
+.+|++++. .|+|.||.+..
T Consensus 238 ~s~LavsSd---KgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSD---KGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcC---CCeEEEEEeec
Confidence 999999998 89999999874
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=119.19 Aligned_cols=204 Identities=12% Similarity=0.190 Sum_probs=138.0
Q ss_pred cccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcce-------eeee-cCC-CeeEEEecCCC-CEEEEEcCCC
Q 005140 208 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNR-------LMRY-AHP-QVKLIDFSPGE-KYLVTYSSHE 275 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~-------~~~~-~~~-~v~~i~~Spdg-~~l~t~s~d~ 275 (712)
.+-+|+..|..++|+| +...||+|+.|. |.||.+. .... +..+ .|. .|..++|+|.- +.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IP-e~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D- 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIP-ENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD- 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECC-CcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC-
Confidence 4579999999999999 456799999998 7799876 2221 1111 344 59999999974 678899999
Q ss_pred CCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc
Q 005140 276 PSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 354 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~ 354 (712)
.+|.+||+.+|+.+-++. |.+.+ | ++.|+. ||.+|++.. |..|+|||..+++++.
T Consensus 154 ---------n~v~iWnv~tgeali~l~-hpd~i------------~-S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 154 ---------NTVSIWNVGTGEALITLD-HPDMV------------Y-SMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ---------ceEEEEeccCCceeeecC-CCCeE------------E-EEEecc-CCceeeeecccceeEEEcCCCCcEee
Confidence 899999999999988888 65554 3 699999 999999999 9999999999999887
Q ss_pred ccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecce-eEEECcCCCEEEEEEccc
Q 005140 355 KKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDC-KMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 355 ~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~s~~g~~l~~~~~~~ 431 (712)
....|.+ .-....|-.+|.++.+-.. .-..-.+-+|+..... ++....+...+.+ -..|.++.+.++.+....
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfs----r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFS----RMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccc----cccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCC
Confidence 6644543 2445667777774443111 1222334455544332 2332333222322 236777777666544321
Q ss_pred ccccccccccEEEEEEec
Q 005140 432 TKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~ 449 (712)
+.++.|.+..
T Consensus 286 --------~~IRYyEit~ 295 (472)
T KOG0303|consen 286 --------SSIRYFEITN 295 (472)
T ss_pred --------cceEEEEecC
Confidence 1256666654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-11 Score=111.69 Aligned_cols=264 Identities=13% Similarity=0.240 Sum_probs=173.6
Q ss_pred eEEecCC-C-CCEEEEec-----CCeEEEEEcC--Cceecccccc-cccCeeeEEECCCCC-----eEEEEeecCCCCCC
Q 005140 323 VFRWGGG-K-DKYFAKLG-----KNMISVYETE--SFTLIDKKSL-KVENVMDFSWSPTDP-----IISLFVPELGGGNQ 387 (712)
Q Consensus 323 ~~~~s~~-d-g~~la~~~-----d~~i~iwd~~--~~~~~~~~~~-~~~~v~~~~~sp~~~-----~la~~~~~~~~~~~ 387 (712)
++.||.. + ..+||.++ .+.|.|..+. +++.+....+ |.-+++.+.|.|+.. .||+ .+.
T Consensus 49 a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-------s~D 121 (364)
T KOG0290|consen 49 AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-------SSD 121 (364)
T ss_pred eeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-------ccC
Confidence 4667631 2 34677776 5778776654 4555544333 333689999999853 4554 667
Q ss_pred CeEEEEEecCCccce-------eeeeeeeecceeEEECcC-CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 388 PARVSLVQIPSKEEL-------RQKNLFSVSDCKMYWQSS-GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~-g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
..++|.......+.. ....-+.....++.|+.- -+++.+.+-|.+ ..+|++...........|
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT---------CTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT---------CTIWDIETGVSGTVKTQL 192 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe---------EEEEEEeeccccceeeEE
Confidence 788887775333211 112224455566778764 456666666655 789999865221223446
Q ss_pred cCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC-CeEEEEeccCC
Q 005140 460 DNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG-RFIVLAGLKGF 535 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg-~~l~~~~~~~~ 535 (712)
.+|...|..++|...| +.||+++.|| .|++||++..... ..+..-+ ..+...++|++.. +++|+-..+
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDG---SvRmFDLR~leHS---TIIYE~p~~~~pLlRLswnkqDpnymATf~~d-- 264 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADG---SVRMFDLRSLEHS---TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-- 264 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCC---cEEEEEecccccc---eEEecCCCCCCcceeeccCcCCchHHhhhhcC--
Confidence 6999999999999855 5788889999 9999999875432 1222222 2356778898854 566665541
Q ss_pred CceEEEEECCcc-eeee--eccccceeeEEECCCCC-EEEEEEccceeccccEEEEEecCce--------eeeeccccee
Q 005140 536 NGQLEFYNVDEL-ETMA--TAEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGKL--------LYRTLKDHFF 603 (712)
Q Consensus 536 dg~v~iwd~~~~-~~~~--~~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~~--------~~~~~~~~i~ 603 (712)
...|.|.|++.- ..+. ..|.+.|+.++|.|..+ .|++++. |....|||++.-. +.-...+.|.
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-----D~qaliWDl~q~~~~~~~dPilay~a~~EVN 339 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-----DCQALIWDLQQMPRENGEDPILAYTAGGEVN 339 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-----cceEEEEecccccccCCCCchhhhhccceee
Confidence 567999999842 2232 37889999999999754 7888888 9999999997321 1122447899
Q ss_pred eeEEecC-CCCCC
Q 005140 604 QFLWRPR-PPSFL 615 (712)
Q Consensus 604 ~~~w~p~-~~~l~ 615 (712)
++.|+|. +.+++
T Consensus 340 qi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 340 QIQWSSSQPDWIA 352 (364)
T ss_pred eeeecccCCCEEE
Confidence 9999975 44444
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-13 Score=129.29 Aligned_cols=256 Identities=14% Similarity=0.181 Sum_probs=195.0
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
..+.++.+|++|+.|+..| +..+|+. +....+.+... .|.++.|-.+.+++|++-.. .+.||| ..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~-t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-----------y~yvYD-~~ 199 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWV-TKKLHFEINVMETVRDVTFLHNEQFFAVAQKK-----------YVYVYD-NN 199 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecc-cceeeeeeehhhhhhhhhhhcchHHHHhhhhc-----------eEEEec-CC
Confidence 4588999999999999999 8999999 88888888755 49999999999999988765 799999 68
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCC
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 373 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (712)
|..++.++.+.... .+.|-| -.-+|++++ .|.+.--|+.+|+++.......+.+..++-+|-+.
T Consensus 200 GtElHClk~~~~v~--------------rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 200 GTELHCLKRHIRVA--------------RLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred CcEEeehhhcCchh--------------hhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 98899888876654 588889 777788888 89999999999999988877777788888899888
Q ss_pred eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 374 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 374 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
.+-+ |..++.+.+ |||+.+--+
T Consensus 265 Vih~-----GhsnGtVSl-------------------------WSP~skePL---------------------------- 286 (545)
T KOG1272|consen 265 VIHL-----GHSNGTVSL-------------------------WSPNSKEPL---------------------------- 286 (545)
T ss_pred eEEE-----cCCCceEEe-------------------------cCCCCcchH----------------------------
Confidence 8887 555555443 566543211
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEec
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~ 532 (712)
..+..|.++|.++++.++|.|+|+++.|. .++|||++... .+.++. .++...+++|..|-. |+ +.
T Consensus 287 ---vKiLcH~g~V~siAv~~~G~YMaTtG~Dr---~~kIWDlR~~~------ql~t~~tp~~a~~ls~SqkglL-A~-~~ 352 (545)
T KOG1272|consen 287 ---VKILCHRGPVSSIAVDRGGRYMATTGLDR---KVKIWDLRNFY------QLHTYRTPHPASNLSLSQKGLL-AL-SY 352 (545)
T ss_pred ---HHHHhcCCCcceEEECCCCcEEeeccccc---ceeEeeecccc------ccceeecCCCccccccccccce-ee-ec
Confidence 22347899999999999999999999999 99999997543 333333 467888999988743 33 33
Q ss_pred cCCCceEEEEECC-c----ceeeeecc--ccceeeEEECCCCCEEEEEEc
Q 005140 533 KGFNGQLEFYNVD-E----LETMATAE--HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 533 ~~~dg~v~iwd~~-~----~~~~~~~~--~~~v~~~~~spdg~~l~t~s~ 575 (712)
...|.||.=. . ++.....| .+.|.++.|.|--..|-.|..
T Consensus 353 ---G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 353 ---GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred ---CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence 4588999522 1 11111122 258889999997666655554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=122.11 Aligned_cols=136 Identities=19% Similarity=0.435 Sum_probs=103.1
Q ss_pred CCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccc-----------cCcee-----------EEE--EeCCCceeE
Q 005140 463 NDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQH-----------AGRVS-----------KLT--TLKGKQANA 517 (712)
Q Consensus 463 ~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~-----------~~~~~-----------~~~--~~~~~~v~~ 517 (712)
...|+++.|-|.+ ..|+++..++ .+++||..-.-. ...+. ++. .+....++.
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sG---nlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~ 295 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASG---NLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINE 295 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecC---ceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccc
Confidence 4789999999954 4556666677 788886532100 00000 111 112235788
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
++|||||++||+.+. ||.++|||+.+.+++...+. +...+++|||||+||++|+. |.-|.||.+..+.+.
T Consensus 296 f~FS~DG~~LA~VSq---DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE-----DDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQ---DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGE-----DDLVTVWSFEERRVV 367 (636)
T ss_pred eeEcCCCceEEEEec---CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCC-----cceEEEEEeccceEE
Confidence 999999999999998 99999999999888776554 78899999999999999999 999999999855444
Q ss_pred -e--ecccceeeeEEec
Q 005140 596 -R--TLKDHFFQFLWRP 609 (712)
Q Consensus 596 -~--~~~~~i~~~~w~p 609 (712)
. -|...|..++|.|
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 3 2778999999998
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-13 Score=132.02 Aligned_cols=243 Identities=12% Similarity=0.152 Sum_probs=162.3
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--------CceeeeccCCCcccccCCCCCcCCCCcCe
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--------GKVMRDFKGSADEFAVGGTGGVAGVSWPV 323 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (712)
+...|+.+.|.|....|++++.+ +.|.+|++.. -+++.+|.+|.+++. |
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed----------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl-------------~ 349 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASED----------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL-------------C 349 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccc----------cchhhhhhcccCCccccceeeeEEEecccCceE-------------E
Confidence 34459999999999999999999 9999999932 146889999999874 7
Q ss_pred EEecCCCCCEEEEec-CCeEEEEEcCCce----------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 324 FRWGGGKDKYFAKLG-KNMISVYETESFT----------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 324 ~~~s~~dg~~la~~~-d~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
++.++ +++.+.+++ ||+|+.|+++... +......|.+.|..+++|+....|+. ++.|++++.|
T Consensus 350 v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls-----cs~DgTvr~w 423 (577)
T KOG0642|consen 350 VVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS-----CSSDGTVRLW 423 (577)
T ss_pred EEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee-----ecCCceEEee
Confidence 88999 999999999 9999999776211 22233457777889999988888887 7778887776
Q ss_pred EEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
...-.....+.... ..+...++.+-
T Consensus 424 ~~~~~~~~~f~~~~-------------------------------------------------------e~g~Plsvd~~ 448 (577)
T KOG0642|consen 424 EPTEESPCTFGEPK-------------------------------------------------------EHGYPLSVDRT 448 (577)
T ss_pred ccCCcCccccCCcc-------------------------------------------------------ccCCcceEeec
Confidence 54322110000000 00111111111
Q ss_pred eCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEE--eC----CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 473 PKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTT--LK----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 473 p~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~--~~----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.....+.+++. -+ .-.++++..... ...+.. .+ ...++.+.++|.+.+.+++.. ++.|+++|..
T Consensus 449 ss~~a~~~~s~~~~---~~~~~~~ev~s~---~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he---d~~Ir~~dn~ 519 (577)
T KOG0642|consen 449 SSRPAHSLASFRFG---YTSIDDMEVVSD---LLIFESSASPGPRRYPQINKVVSHPTADITFTAHE---DRSIRFFDNK 519 (577)
T ss_pred cchhHhhhhhcccc---cccchhhhhhhh---eeeccccCCCcccccCccceEEecCCCCeeEeccc---CCceeccccc
Confidence 10000011111 00 111222211110 001100 01 124678899999988888887 9999999999
Q ss_pred cceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 546 ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 546 ~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+++++.. .|...++++++.|+|-+|++++. |+.+++|.+.-.
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~-----d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH-----DGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecC-----Cceeehhhccch
Confidence 9999875 67789999999999999999999 999999998644
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=113.25 Aligned_cols=195 Identities=12% Similarity=0.211 Sum_probs=132.8
Q ss_pred ccchhhccCCCCCceEEEEEC---C----eeEEEecCCCCCCC--------cccc-cCCCcccceEEEcCCCcEEEEEec
Q 005140 170 ENLQKWLTDEKARDQFVIRSG---T----DTEVLWNDARHLKP--------EPVY-KRSYWTESFVQWSPLGTYLATVHR 233 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~---~----~~~~~w~~~~~~~~--------~~~~-~~~~~~v~~v~~Spdg~~lat~~~ 233 (712)
+.++.....|..+..++..+. + ..+.+|+++....+ +..+ +.+.+.+.|+-|-|++..||+...
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDD 143 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEecc
Confidence 444445555555545544443 1 33459999765444 1122 245668999999999999999998
Q ss_pred CceEEeecccCcceeeeec------CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC
Q 005140 234 QGAAVWGGANTFNRLMRYA------HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS 304 (712)
Q Consensus 234 ~~i~iw~~~~~~~~~~~~~------~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~ 304 (712)
+.|.+|++..+.+.+..+. +. ..++-+||| +|..+++.+.. +++.||+++.+....+...
T Consensus 144 n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~-----------tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 144 NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS-----------TLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC-----------cEEEEEccchhhhcchhhh
Confidence 8899999984444343332 11 377889999 88888887654 8999999988876666543
Q ss_pred C-cccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCc-eecccccccccCeeeEEECCCCC-eEEEEe
Q 005140 305 A-DEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDP-IISLFV 379 (712)
Q Consensus 305 ~-~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~-~la~~~ 379 (712)
. ..+. .+.|.| +-+ +|++++ |+.|+|||+..- ..+.....|..-|.++.|+|.-. .|++
T Consensus 213 Hgq~vr-------------dlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs-- 276 (370)
T KOG1007|consen 213 HGQRVR-------------DLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS-- 276 (370)
T ss_pred hcceee-------------eccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe--
Confidence 3 2221 578899 655 677888 999999998843 35555566777799999999854 4455
Q ss_pred ecCCCCCCCeEEEEE
Q 005140 380 PELGGGNQPARVSLV 394 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~ 394 (712)
+|.|..+.++..
T Consensus 277 ---~~SDs~V~Lsca 288 (370)
T KOG1007|consen 277 ---GGSDSAVNLSCA 288 (370)
T ss_pred ---cCCCceeEEEec
Confidence 666666555443
|
|
| >KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-13 Score=121.44 Aligned_cols=78 Identities=26% Similarity=0.437 Sum_probs=71.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.+.|-|.|||. +..|.+|+++|.+||.|.. ++|.+|++||.+||||||.|.++++|.+||+.|||+-++.
T Consensus 188 D~~tvRvtNLse------d~~E~dL~eLf~~fg~i~r--vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~- 258 (270)
T KOG0122|consen 188 DEATVRVTNLSE------DMREDDLEELFRPFGPITR--VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN- 258 (270)
T ss_pred ccceeEEecCcc------ccChhHHHHHhhccCccce--eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce-
Confidence 457999999998 6669999999999999999 9999999999999999999999999999999999998885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
-+|+|-.
T Consensus 259 LILrvEw 265 (270)
T KOG0122|consen 259 LILRVEW 265 (270)
T ss_pred EEEEEEe
Confidence 3666654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-11 Score=115.61 Aligned_cols=219 Identities=18% Similarity=0.228 Sum_probs=149.0
Q ss_pred CCCEEEEecCCeEEEEEcCCceeccccc---ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce-eee
Q 005140 330 KDKYFAKLGKNMISVYETESFTLIDKKS---LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL-RQK 405 (712)
Q Consensus 330 dg~~la~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~ 405 (712)
||.++.+.++|.+++|....+.+-.... ...+++..+.-+|....|+.+ ||..+...+-+|++...+.+ ..+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~----GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVAT----GGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEec----Cchhcccceeeeecccceeeeecc
Confidence 7777877779999999988554222111 122456777777776666543 54542233334443322111 111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC--CCEEEEEEc
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHG 483 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~ 483 (712)
++ |+ .+| .+.+ .-.++++.|-|. ...||+++.
T Consensus 191 Nv-----------pn-D~L-------------------------------~LrV---PvW~tdi~Fl~g~~~~~fat~T~ 224 (412)
T KOG3881|consen 191 NV-----------PN-DRL-------------------------------GLRV---PVWITDIRFLEGSPNYKFATITR 224 (412)
T ss_pred CC-----------CC-ccc-------------------------------ccee---eeeeccceecCCCCCceEEEEec
Confidence 10 00 000 0111 224455667665 788999998
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccce
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMA 558 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v 558 (712)
-+ .|++||.+.+.. ++..+. .++++++...|+|++|++|.. .|.+..||+++++++.. +-.+.+
T Consensus 225 ~h---qvR~YDt~~qRR-----PV~~fd~~E~~is~~~l~p~gn~Iy~gn~---~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 225 YH---QVRLYDTRHQRR-----PVAQFDFLENPISSTGLTPSGNFIYTGNT---KGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred ce---eEEEecCcccCc-----ceeEeccccCcceeeeecCCCcEEEEecc---cchhheecccCceeeccccCCccCCc
Confidence 88 999999975443 555544 568999999999999999988 99999999999888764 445899
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEecCc-eeeee-cccceeeeEEecCCCCC
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT-LKDHFFQFLWRPRPPSF 614 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~-~~~~i~~~~w~p~~~~l 614 (712)
+++..+|.+++||+++. |.-++|+|+..+ ++++. -..+++.+.++++-+..
T Consensus 294 rsih~hp~~~~las~GL-----DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~e 346 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGL-----DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNIE 346 (412)
T ss_pred ceEEEcCCCceEEeecc-----ceeEEEeecccchhhhhhhhhccccEEEecCCcccc
Confidence 99999999999999999 999999999874 44444 44778888998875433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-09 Score=111.97 Aligned_cols=279 Identities=13% Similarity=0.157 Sum_probs=161.8
Q ss_pred cccceEEEcCCCcEEEEEecC----c-eEEeeccc---CcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ----G-AAVWGGAN---TFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~----~-i~iw~~~~---~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
..-+.++++|++++|.+.... + |..|.+.. +...+.+.... ....++++|++++|+++....
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~-------- 108 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG-------- 108 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--------
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--------
Confidence 344679999999999998773 3 66776652 22344444422 367899999999999987641
Q ss_pred ccEEEEEEccC-Cceeee--ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCce--ecccc
Q 005140 284 RVVINIFDVRT-GKVMRD--FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFT--LIDKK 356 (712)
Q Consensus 284 ~~~I~iwd~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~--~~~~~ 356 (712)
+.|.++++.. |..... ...+...- .....+.+-.-.++.|+| ++++++... ...|.+|++.... +....
T Consensus 109 -g~v~v~~l~~~g~l~~~~~~~~~~g~g--~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 109 -GSVSVFPLDDDGSLGEVVQTVRHEGSG--PNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp -TEEEEEEECTTSEEEEEEEEEESEEEE--SSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred -CeEEEEEccCCcccceeeeecccCCCC--CcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 7899999976 443222 11110000 000001111111589999 999888776 7789999987544 32211
Q ss_pred --cc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeee----e--ecceeEEECcCCCEEE
Q 005140 357 --SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLF----S--VSDCKMYWQSSGDYLA 425 (712)
Q Consensus 357 --~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~----~--~~~~~~~~s~~g~~l~ 425 (712)
.. ...+...+.|+|+++++.+. ....+.+.++.++..... .+...... . .....+..+|+|++|+
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~----~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVV----NELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEE----ETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred ccccccCCCCcEEEEcCCcCEEEEe----cCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence 11 22458899999999988663 223444555555522322 12111111 1 1344577899999998
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEE-EecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVL-ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+..... ..+.+|+++........+ .++........++++|+|++|+++..+.. .|.+|+++...+. +
T Consensus 261 vsnr~~--------~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~--~v~vf~~d~~tG~--l 328 (345)
T PF10282_consen 261 VSNRGS--------NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN--TVSVFDIDPDTGK--L 328 (345)
T ss_dssp EEECTT--------TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT--EEEEEEEETTTTE--E
T ss_pred EEeccC--------CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC--eEEEEEEeCCCCc--E
Confidence 866542 237889986543333222 23222445889999999999999987653 8999998654432 2
Q ss_pred eEEEE-eCCCceeEEEE
Q 005140 505 SKLTT-LKGKQANALFW 520 (712)
Q Consensus 505 ~~~~~-~~~~~v~~l~~ 520 (712)
..... +......|+.|
T Consensus 329 ~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSEEEEEE
T ss_pred EEecccccCCCCEEEeC
Confidence 23322 33334566655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-11 Score=123.01 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=129.6
Q ss_pred eEEEecCCCCCCCcccccCCCcccceEEEcCCCcE-EEEEecC-c---eEEeecccCcceeeeecCCC-eeEEEecCCCC
Q 005140 193 TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTY-LATVHRQ-G---AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEK 266 (712)
Q Consensus 193 ~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~-lat~~~~-~---i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~ 266 (712)
...+|-.+..+.....+.... ......|||||+. +++.+.. + |.++|+. +++...-...++ .....|||||+
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcEEEEecCCCcEEeeEECCCCC
Confidence 445666555554444444443 6778999999985 6655543 2 6788987 554433333333 66789999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEecC--C--e
Q 005140 267 YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK--N--M 341 (712)
Q Consensus 267 ~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d--~--~ 341 (712)
.|+...... ++..|.++|+.++.. +.+..+.. .. ...|+| ||+.|+..++ + .
T Consensus 246 ~la~~~~~~-------g~~~Iy~~dl~~g~~-~~LT~~~~~d~--------------~p~~SP-DG~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 246 KLLLTMAPK-------GQPDIYLYDTNTKTL-TQITNYPGIDV--------------NGNFVE-DDKRIVFVSDRLGYPN 302 (419)
T ss_pred EEEEEEccC-------CCcEEEEEECCCCcE-EEcccCCCccC--------------ccEECC-CCCEEEEEECCCCCce
Confidence 887665431 125799999877764 34433322 22 368999 9998888873 2 6
Q ss_pred EEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCC--CCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 342 ISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG--NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
|.++++.++.... +...+.....|||+|+.|++........ .+...|+++++....... .... .......|+|
T Consensus 303 Iy~~dl~~g~~~r---lt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SP 377 (419)
T PRK04043 303 IFMKKLNSGSVEQ---VVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSS 377 (419)
T ss_pred EEEEECCCCCeEe---CccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECC
Confidence 7777887665422 1111223458999999999854321000 033688888876654221 1111 1233578999
Q ss_pred CCCEEEEEEccc
Q 005140 420 SGDYLAVKVDRY 431 (712)
Q Consensus 420 ~g~~l~~~~~~~ 431 (712)
||+.|++.+..+
T Consensus 378 DG~~I~f~~~~~ 389 (419)
T PRK04043 378 DGGSIMFIKYLG 389 (419)
T ss_pred CCCEEEEEEccC
Confidence 999999887653
|
|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-13 Score=115.20 Aligned_cols=82 Identities=29% Similarity=0.357 Sum_probs=75.7
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.+-+.+|||+||+. ...++.|.++|-+.|+|.. ++||.|+.|++.+||||++|.++|+|..|++.||..+|-
T Consensus 6 rnqd~tiyvgnld~------kvs~~~l~EL~iqagpVv~--i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY 77 (203)
T KOG0131|consen 6 RNQDATLYVGNLDE------KVSEELLYELFIQAGPVVN--LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY 77 (203)
T ss_pred cCCCceEEEecCCH------HHHHHHHHHHHHhcCceee--eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc
Confidence 34566999999997 5668999999999999999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ +++|+...
T Consensus 78 gr-pIrv~kas 87 (203)
T KOG0131|consen 78 GR-PIRVNKAS 87 (203)
T ss_pred Cc-eeEEEecc
Confidence 86 99999877
|
|
| >KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-14 Score=122.25 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=74.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+..|||+|||. +.+|.+|.-+|++||+|++ |.+.+|+.||++|||||+.|++......|+.+|||..+.++
T Consensus 34 dsA~Iyiggl~~------~LtEgDil~VFSqyGe~vd--inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPY------ELTEGDILCVFSQYGEIVD--INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cceEEEECCCcc------cccCCcEEEEeeccCceEE--EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 467999999998 7779999999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
+++|-....
T Consensus 106 -tirVDHv~~ 114 (219)
T KOG0126|consen 106 -TIRVDHVSN 114 (219)
T ss_pred -eEEeeeccc
Confidence 888766543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=128.30 Aligned_cols=289 Identities=15% Similarity=0.224 Sum_probs=182.3
Q ss_pred cceEEEcCCCcEEEEEec-CceEEeecccCcceeeeecCC-----CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEE
Q 005140 216 ESFVQWSPLGTYLATVHR-QGAAVWGGANTFNRLMRYAHP-----QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~-~~i~iw~~~~~~~~~~~~~~~-----~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
-..+.|+|-...++++.. +.|.|||.+ ....+..|+.. .|+.+.+-. |...|++++.| |.|
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d----------GvI 1135 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD----------GVI 1135 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCCCCCCccceeeeecccchhheeeeccC----------ceE
Confidence 456788888888888874 458999999 88887777532 488888765 45689999999 999
Q ss_pred EEEEc-cCC----ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccccccc-
Q 005140 288 NIFDV-RTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVE- 361 (712)
Q Consensus 288 ~iwd~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~- 361 (712)
+||+- .++ +.+..+.+-.+.. .+..+... .+.|-.+.|.++++|.-..|+|||+..-.++........
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~-----~~~r~~~~-v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQL-----PGARGTGL-VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred EEecccccccCCceeEEeeccccccC-----ccCCCCCe-eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 99973 222 3344433322211 01111111 467776344555555578999999986554433322211
Q ss_pred CeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 362 NVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 362 ~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
.|+.++-+ +.|+.|+. |.+|+.++++....+...
T Consensus 1210 ~vTaLS~~~~~gn~i~A-----GfaDGsvRvyD~R~a~~d---------------------------------------- 1244 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAA-----GFADGSVRVYDRRMAPPD---------------------------------------- 1244 (1387)
T ss_pred cceeecccccCCceEEE-----eecCCceEEeecccCCcc----------------------------------------
Confidence 23433322 12455555 555555555443332211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCc--eEEEEEeeCCCE-EEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCcee
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDK--IIAFAWEPKGHR-FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 516 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~--v~~~~~sp~g~~-l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 516 (712)
........|+.. |..+.+.+.|-. |++++.+| .|++||++......-......-. +...+
T Consensus 1245 -------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G---~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1245 -------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG---DIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred -------------ccceeecccCCcccceeEEeecCCCcceeeeccCC---eEEEEecccCcccccceeeeccccCccce
Confidence 111112244554 888888887654 99999999 99999998632111111122122 22489
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeee--------eccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~--------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
++..+++...+|+|+ .+.|.||++.+.++.. ....+.+++++|+|---.+|+|+. |+.|.||.
T Consensus 1309 al~VH~hapiiAsGs----~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~-----Ds~V~iYs 1379 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGS----AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA-----DSTVSIYS 1379 (1387)
T ss_pred eeeeccCCCeeeecC----cceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC-----CceEEEee
Confidence 999999999999987 4899999998433221 123367789999999888999988 99999998
Q ss_pred ecC
Q 005140 589 FNG 591 (712)
Q Consensus 589 ~~g 591 (712)
...
T Consensus 1380 ~~k 1382 (1387)
T KOG1517|consen 1380 CEK 1382 (1387)
T ss_pred cCC
Confidence 764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-11 Score=114.99 Aligned_cols=286 Identities=12% Similarity=0.186 Sum_probs=179.3
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcC--CCcEEEEEecCc-eEEeecccCcceeeee---cCCC-
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGANTFNRLMRY---AHPQ- 255 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~~- 255 (712)
..+++..+++.+.+++. ..++....++++..+++.+.|.. .+..+.+++.|| |++||+. ......++ .+++
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R-s~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR-SQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee-cchhhhheeccCCCCC
Confidence 35788899999999998 45778888999999999999987 567899999998 8999998 66655544 3443
Q ss_pred -eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce-eeec-cCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 256 -VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDF-KGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 256 -v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
-.+++..-.++.+++|..-.- ..-.|.+||++..+. ++.+ ..|.+.++ +++|.|++.+
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~------s~A~v~lwDvR~~qq~l~~~~eSH~DDVT-------------~lrFHP~~pn 179 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTR------SDASVVLWDVRSEQQLLRQLNESHNDDVT-------------QLRFHPSDPN 179 (376)
T ss_pred cceEeeccCcCCeEEecccccc------CceEEEEEEeccccchhhhhhhhccCcce-------------eEEecCCCCC
Confidence 556666667788887754311 125799999988776 5554 45666664 7999996778
Q ss_pred EEEEec-CCeEEEEEcCCcee---cccccccccCeeeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 333 YFAKLG-KNMISVYETESFTL---IDKKSLKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
.|++++ ||-|.|||+..-.. +....-+...|..+.|..++ ++.+. +......+|.++-.+ ...
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl------TH~Etf~~~ele~~~--~~~--- 248 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL------THMETFAIYELEDGS--EET--- 248 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE------EccCceeEEEccCCC--hhh---
Confidence 999999 99999999874321 11111234458999999887 43332 234444555443322 111
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDS 485 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~ 485 (712)
|.+.-...+.-.. . .+ ....+... .+| ++..+++++++.
T Consensus 249 ----------~~~~~~~~~~d~r--~-----------~~----------------~~dY~I~~-~~~~~~~~~~l~g~~~ 288 (376)
T KOG1188|consen 249 ----------WLENPDVSADDLR--K-----------ED----------------NCDYVINE-HSPGDKDTCALAGTDS 288 (376)
T ss_pred ----------cccCccchhhhHH--h-----------hh----------------hhhheeec-ccCCCcceEEEecccc
Confidence 1111111000000 0 00 00111111 122 445555655532
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCC---ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
. ...++-+...........+..+.++ .|.++.|...+.++++|+. ||.|.+|..+
T Consensus 289 n--~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE---DG~l~~Wk~~ 346 (376)
T KOG1188|consen 289 N--KGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE---DGLLQAWKVE 346 (376)
T ss_pred C--ceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC---CceEEEEecC
Confidence 1 5666655431111112244455543 4688999999999999998 9999999853
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-11 Score=105.49 Aligned_cols=258 Identities=15% Similarity=0.210 Sum_probs=168.7
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----------ceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
+..|..-+|||.++||+.|+.+ |+|.++.+.+- ..+-.+++|..++.
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~----------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy------------- 66 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLF----------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIY------------- 66 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCC----------CeEEEEEehhhhccccCCCCCcceeeccccCCCee-------------
Confidence 3346777899999999999999 99999987431 23344456655542
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCcee-cc------------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCe
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTL-ID------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 389 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~-~~------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 389 (712)
.++|. +.+|.+++||.|+-|....... .. .-....+.|+.+...|..+.|.+ +++| .
T Consensus 67 ~~~f~---d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-----AgGD--~ 136 (325)
T KOG0649|consen 67 YLAFH---DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-----AGGD--G 136 (325)
T ss_pred eeeee---hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-----ecCC--e
Confidence 46664 3688889999999987653221 00 00122345777777777666666 3333 3
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 469 (712)
.++.+++.+++ -+.++.+|.+.|+++
T Consensus 137 ~~y~~dlE~G~------------------------------------------------------i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 137 VIYQVDLEDGR------------------------------------------------------IQREYRGHTDYVHSV 162 (325)
T ss_pred EEEEEEecCCE------------------------------------------------------EEEEEcCCcceeeee
Confidence 33333332211 114567999999999
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC---------CceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG---------KQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
+--.....+.+++.|| ++++||.++++.. +.+..... ..|.+++ -+..++++|+ ...+.
T Consensus 163 v~R~~~~qilsG~EDG---tvRvWd~kt~k~v---~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg----Gp~ls 230 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG---TVRVWDTKTQKHV---SMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG----GPKLS 230 (325)
T ss_pred eecccCcceeecCCCc---cEEEEecccccee---EEeccccChhhcCcccCceeEEEe--ccCceEEecC----CCcee
Confidence 8866666788999999 9999999886632 12222111 1233343 4566888887 57899
Q ss_pred EEECCcceeeeeccc-cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecc--cceeeeEEecCCCCCCC
Q 005140 541 FYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK--DHFFQFLWRPRPPSFLT 616 (712)
Q Consensus 541 iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~--~~i~~~~w~p~~~~l~s 616 (712)
+|.++..+......- ..+..+.|..| .+++++. .+.+.-|.++|.+....+. ...+...|+-.+-.++|
T Consensus 231 lwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~-----g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGE-----GNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFIS 302 (325)
T ss_pred EEeccCCCceEEEecccceeEeeeecc--eEEEecc-----ccceeeeeeccEEEEeccCCccceeeecccCCceEEEE
Confidence 999998777665433 56667777654 5777776 6899999999987766644 34666777766654444
|
|
| >KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-13 Score=119.36 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=75.7
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+||.. ++.++.|...|-+||.|+. |.+|+|.+++++||||||+|.-.|+|..||.+||+.+|.+
T Consensus 8 ~~KrtlYVGGlad------eVtekvLhaAFIPFGDI~d--IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 8 NQKRTLYVGGLAD------EVTEKVLHAAFIPFGDIKD--IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred ccceeEEeccchH------HHHHHHHHhccccccchhh--cccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence 3457999999997 7789999999999999999 9999999999999999999999999999999999999999
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ +++||...
T Consensus 80 r-tirVN~Ak 88 (298)
T KOG0111|consen 80 R-TIRVNLAK 88 (298)
T ss_pred e-eEEEeecC
Confidence 6 99999754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-09 Score=101.65 Aligned_cols=297 Identities=13% Similarity=0.146 Sum_probs=182.2
Q ss_pred EEEEEe---cCceEEeecccCcce---eeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--Cce
Q 005140 227 YLATVH---RQGAAVWGGANTFNR---LMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--GKV 297 (712)
Q Consensus 227 ~lat~~---~~~i~iw~~~~~~~~---~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~--g~~ 297 (712)
|+.|.. ..+|.+|++.+.... +... ....++.|+|+|++++|.++..+.. .+.|..|.+.. |++
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-------~ggvaay~iD~~~G~L 78 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-------EGGVAAYRIDPDDGRL 78 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-------cCcEEEEEEcCCCCeE
Confidence 455555 567999988722222 2222 2445999999999999999887611 15566666643 543
Q ss_pred e--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCC-ceeccc--ccccccC--------
Q 005140 298 M--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES-FTLIDK--KSLKVEN-------- 362 (712)
Q Consensus 298 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~-~~~~~~--~~~~~~~-------- 362 (712)
- .......... ..++.++ +|++++++. .|.|.++-+.. |.+... ...|.+.
T Consensus 79 t~ln~~~~~g~~p-------------~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 79 TFLNRQTLPGSPP-------------CYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred EEeeccccCCCCC-------------eEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 2 1111111110 1589999 999999988 89999999865 433221 1123332
Q ss_pred --eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee--ee-eeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 363 --VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ--KN-LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 363 --v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~-~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
+....+.|++++|++. .-+.-+|.+|++..++.... .. ........+.|+|+|++..+...-.
T Consensus 145 ~h~H~a~~tP~~~~l~v~------DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~------ 212 (346)
T COG2706 145 PHVHSANFTPDGRYLVVP------DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN------ 212 (346)
T ss_pred CccceeeeCCCCCEEEEe------ecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC------
Confidence 7888999999999873 34555777777765432211 11 1233445678999999887765432
Q ss_pred ccccEEEEEEecCCcceeEEE----ec---CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe
Q 005140 438 TYTGFELFRIKERDIPIEVLE----LD---NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL 510 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~----l~---~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~ 510 (712)
+.+.+|...........+. ++ .......++..+|||++|.++.... +.|.+|.+....+. +..+...
T Consensus 213 --stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~--dsI~~f~V~~~~g~--L~~~~~~ 286 (346)
T COG2706 213 --STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH--DSIAVFSVDPDGGK--LELVGIT 286 (346)
T ss_pred --CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC--CeEEEEEEcCCCCE--EEEEEEe
Confidence 2366676665433322222 11 1244567899999999988875532 37999998754432 3333333
Q ss_pred C--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeee---ccccceeeEEEC
Q 005140 511 K--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMAT---AEHFMATDVEWD 564 (712)
Q Consensus 511 ~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~---~~~~~v~~~~~s 564 (712)
. +..-..+.++|.|++|++++.. ...|.+|..+ +|++-.. .......|+.|.
T Consensus 287 ~teg~~PR~F~i~~~g~~Liaa~q~--sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 287 PTEGQFPRDFNINPSGRFLIAANQK--SDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ccCCcCCccceeCCCCCEEEEEccC--CCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 2 3346889999999999999863 3457787665 5655433 233445555553
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=118.90 Aligned_cols=183 Identities=18% Similarity=0.285 Sum_probs=133.9
Q ss_pred CceEEEEEC-CeeEEEecCCCCC------CCcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcceeeeec
Q 005140 182 RDQFVIRSG-TDTEVLWNDARHL------KPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRYA 252 (712)
Q Consensus 182 ~~~~~~~~~-~~~~~~w~~~~~~------~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~~ 252 (712)
+|+.+++++ |.++.+|..+..+ .+...+.+|+..|..++|+|.- +.|++++.|. |.||++. ++..+.++.
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeali~l~ 171 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEALITLD 171 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc-CCceeeecC
Confidence 345555444 5666799986433 4567789999999999999964 4677777777 7899999 888888888
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|++ |.++.|+.||.+|+|.+.| ..|+|||.++|+.+..-.+|.+... +...|-. +|
T Consensus 172 hpd~i~S~sfn~dGs~l~TtckD----------KkvRv~dpr~~~~v~e~~~heG~k~------------~Raifl~-~g 228 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCKD----------KKVRVIDPRRGTVVSEGVAHEGAKP------------ARAIFLA-SG 228 (472)
T ss_pred CCCeEEEEEeccCCceeeeeccc----------ceeEEEcCCCCcEeeecccccCCCc------------ceeEEec-cC
Confidence 888 9999999999999999999 8999999999999988877765431 1467888 89
Q ss_pred CEEEEec----CCeEEEEEcCCcee-cccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 332 KYFAKLG----KNMISVYETESFTL-IDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 332 ~~la~~~----d~~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
+++.++- +..+.+|+...... +.-..+ ...+|.---|.||.+.|.++ |.+|+.++.+
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~----GKGD~~IRYy 291 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC----GKGDSSIRYF 291 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE----ecCCcceEEE
Confidence 8555553 68899999765431 111111 23356666678887777653 3455555543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-11 Score=114.60 Aligned_cols=280 Identities=12% Similarity=0.206 Sum_probs=177.4
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc------CCceeeeccCCC-cccccCCCCCcCCCCcCeE
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR------TGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~------~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 324 (712)
|.+ |..+.||.+|++||+|+.| ..+++|++. +-+++.....|. ..+ + ++
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD----------~~~~~W~~de~~~~k~~KPI~~~~~~H~SNI------------F-~L 111 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDD----------MHGRVWNVDELMVRKTPKPIGVMEHPHRSNI------------F-SL 111 (609)
T ss_pred hccccceeeeccCCeEEeecCCc----------ceeeeechHHHHhhcCCCCceeccCccccce------------E-EE
Confidence 555 9999999999999999999 899999974 234444443333 222 2 68
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE- 400 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~- 400 (712)
.|.. ...++.+++ +++|...|+.+.+.+..... ..+.|..+..+|.++.+++ .+.+ .+|.+|++....
T Consensus 112 ~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-----~t~~--~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 112 EFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-----VTRA--KLVSFIDNRDRQN 183 (609)
T ss_pred EEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEE-----EecC--ceEEEEeccCCCC
Confidence 8988 778888888 99999999998876654322 2236999999999999988 3344 355566654433
Q ss_pred cee--eeeeeeecceeEEECcCCCEEEE-EEcccccccccccccEEEEEEecCCcceeEEE----ecCCCCceEEEEEee
Q 005140 401 ELR--QKNLFSVSDCKMYWQSSGDYLAV-KVDRYTKTKKSTYTGFELFRIKERDIPIEVLE----LDNKNDKIIAFAWEP 473 (712)
Q Consensus 401 ~~~--~~~~~~~~~~~~~~s~~g~~l~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----l~~h~~~v~~~~~sp 473 (712)
++. ........-...-|+|....|+. ....+ +..+|+++....++.... |+.....-.+..|+|
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~---------G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETG---------GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccC---------CCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 111 11111122233457887665444 33332 367888887655443222 211112225678999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--C-----ceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--K-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~-----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
+|+.|.+.-... .-.+||+.+.. |-.++.-++ + .+.+++|.-|- .+++|+. +-.|++|.+..
T Consensus 255 ~G~Q~msiRR~~---~P~~~D~~S~R----~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD---~~~i~~WklP~ 323 (609)
T KOG4227|consen 255 SGNQFMSIRRGK---CPLYFDFISQR----CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSD---HWGIHIWKLPR 323 (609)
T ss_pred CCCeehhhhccC---CCEEeeeeccc----ceeEeccCCCCcceeeeeeeeeeeecce-eeeccCc---ccceEEEecCC
Confidence 999888766544 33467775422 112222111 1 24456676554 4777776 78899998752
Q ss_pred -----c-------------------ee-eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 547 -----L-------------------ET-MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 547 -----~-------------------~~-~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
| .. +..+|..-++.+.|+|....|++++. .+.++||.
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV-----E~~~KlWS 385 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV-----ENSFKLWS 385 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch-----hhheeccc
Confidence 1 11 12366777889999999888888877 89999985
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-11 Score=129.10 Aligned_cols=285 Identities=15% Similarity=0.203 Sum_probs=179.4
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC-CCCCEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG-GKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~dg~~l 334 (712)
...+.|+|=...++++... -.|+|||.+.++.+..|..+.... ..|. .+.+-. .|..++
T Consensus 1067 pk~~~~hpf~p~i~~ad~r----------~~i~vwd~e~~~~l~~F~n~~~~~-----t~Vs-----~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDR----------ERIRVWDWEKGRLLNGFDNGAFPD-----TRVS-----DLELINEQDDALL 1126 (1387)
T ss_pred CceeeecCCCceeEEcCCc----------ceEEEEecccCceeccccCCCCCC-----Cccc-----eeeeecccchhhe
Confidence 5678889988888888866 589999999999999887765332 1222 334332 144566
Q ss_pred EEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 335 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
.+++ ||.|+||+--.... + +..-|+ +|++=...+.. ..+.+ +
T Consensus 1127 Ltas~dGvIRIwk~y~~~~--~---~~eLVT--aw~~Ls~~~~~-------~r~~~-----------------------~ 1169 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKW--K---KPELVT--AWSSLSDQLPG-------ARGTG-----------------------L 1169 (1387)
T ss_pred eeeccCceEEEeccccccc--C---CceeEE--eeccccccCcc-------CCCCC-----------------------e
Confidence 6777 99999997431100 0 000011 23221111111 11111 1
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i 492 (712)
-+.|..+..+|+++.+-.. +++|+......- ..+.. +....|+++.-+ +.|+.|++|..|| .|++
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~---------IRIWDa~~E~~~-~diP~-~s~t~vTaLS~~~~~gn~i~AGfaDG---svRv 1235 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRS---------IRIWDAHKEQVV-ADIPY-GSSTLVTALSADLVHGNIIAAGFADG---SVRV 1235 (1387)
T ss_pred eeehhhhCCeEEecCCeeE---------EEEEecccceeE-eeccc-CCCccceeecccccCCceEEEeecCC---ceEE
Confidence 2357666666666554333 678877642111 11111 223445555433 3579999999999 9999
Q ss_pred EEeecccccCceeEEEEeCCC----ceeEEEEccCCCe-EEEEeccCCCceEEEEECCcceeee--e--c--ccc-ceee
Q 005140 493 YSMRTAQHAGRVSKLTTLKGK----QANALFWSPSGRF-IVLAGLKGFNGQLEFYNVDELETMA--T--A--EHF-MATD 560 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spdg~~-l~~~~~~~~dg~v~iwd~~~~~~~~--~--~--~~~-~v~~ 560 (712)
||.+...... .+.....| +|..+.+.+.|-. |++|+. +|.|++||++...... + . ..+ ..++
T Consensus 1236 yD~R~a~~ds---~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1236 YDRRMAPPDS---LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---DGDIQLLDLRMSSKETFLTIVAHWEYGSALTA 1309 (1387)
T ss_pred eecccCCccc---cceeecccCCcccceeEEeecCCCcceeeecc---CCeEEEEecccCcccccceeeeccccCcccee
Confidence 9997544321 22222222 3888999887765 889988 9999999998522111 1 1 113 4899
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEecCceeeee---------cccceeeeEEecCCCCCCChhhHHHH
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---------LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---------~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
+..++....||+|+. +.++||++.|+++... ..+.+.+++|+|....|+.++.|..|
T Consensus 1310 l~VH~hapiiAsGs~------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeeccCCCeeeecCc------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 999999999999987 7999999999876543 23678999999998888887766543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-12 Score=124.61 Aligned_cols=161 Identities=16% Similarity=0.284 Sum_probs=113.9
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec---CCCeeEEEecC--CCCEEEEEcCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA---HPQVKLIDFSP--GEKYLVTYSSHEP 276 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~---~~~v~~i~~Sp--dg~~l~t~s~d~~ 276 (712)
...+..+++|++.|+|+.|+.||.+||+|+.|. +.|||.- ..+.+..++ ..+|.++.|-| +.+.+++|+.|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD-- 116 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD-- 116 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCc--
Confidence 445667899999999999999999999999998 9999998 777666653 44599999999 45789999999
Q ss_pred CCCcCCCccEEEEEEccCC----------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEE
Q 005140 277 SNPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISV 344 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~i 344 (712)
..|+++|+... ...+.+..|...+. .++-.| ++ ..+-+++ ||+|+-
T Consensus 117 --------k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK-------------ria~~p-~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 117 --------KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK-------------RIATAP-NGPHTFWSASEDGTIRQ 174 (758)
T ss_pred --------ceEEEEecccccccccccCccchhhhhhhhhhhhh-------------heecCC-CCCceEEEecCCcceee
Confidence 89999998642 22344444544431 345556 55 5666777 999999
Q ss_pred EEcCCceecc----------cccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEE
Q 005140 345 YETESFTLID----------KKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 345 wd~~~~~~~~----------~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~ 393 (712)
||+.....-. ......-...++..+|... +|++ |+.+-.++++.
T Consensus 175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV-----GgsdpfarLYD 229 (758)
T KOG1310|consen 175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV-----GGSDPFARLYD 229 (758)
T ss_pred ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe-----cCCCchhhhhh
Confidence 9987421110 0111112367899999865 5666 66665555543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=116.94 Aligned_cols=277 Identities=12% Similarity=0.076 Sum_probs=182.9
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc--eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+....+.|..||||+||...+.-. |++||+. .......-+.. .|...-+|-|-..++....| .+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~feiLsDD~SK~v~L~~D----------R~ 117 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFEILSDDYSKSVFLQND----------RT 117 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcc-cceeeeeecccccceeEEEeccchhhheEeecC----------ce
Confidence 4556778899999999977666544 9999998 65555544433 37777777777777777777 66
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeE
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
|.+-. .-|... .+..+.... .++++...-.+++.++...|.=+++..|..+.......++++++
T Consensus 118 IefHa-k~G~hy-~~RIP~~GR--------------Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 118 IEFHA-KYGRHY-RTRIPKFGR--------------DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eeehh-hcCeee-eeecCcCCc--------------cccccCCCccEEEeecCcceEEEEccccccccccccccccceee
Confidence 66543 233321 122221111 12222103355666667788888999999988887788889999
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEE
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 446 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 446 (712)
..++-..+|++ |+.++.+..| +...+..+.... -
T Consensus 182 ~in~~hgLla~-----Gt~~g~VEfw--DpR~ksrv~~l~-----------------------~---------------- 215 (703)
T KOG2321|consen 182 SINEEHGLLAC-----GTEDGVVEFW--DPRDKSRVGTLD-----------------------A---------------- 215 (703)
T ss_pred eecCccceEEe-----cccCceEEEe--cchhhhhheeee-----------------------c----------------
Confidence 99999999998 6556655543 322221111100 0
Q ss_pred EecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccC--
Q 005140 447 IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPS-- 523 (712)
Q Consensus 447 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spd-- 523 (712)
... .+ ..........|+++.|+.+|-.+++|...| .+.|||+++.... .+.... .-+|..+.|.+.
T Consensus 216 -~~~-v~--s~pg~~~~~svTal~F~d~gL~~aVGts~G---~v~iyDLRa~~pl----~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 216 -ASS-VN--SHPGGDAAPSVTALKFRDDGLHVAVGTSTG---SVLIYDLRASKPL----LVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred -ccc-cC--CCccccccCcceEEEecCCceeEEeeccCC---cEEEEEcccCCce----eecccCCccceeeecccccCC
Confidence 000 00 000001134589999999999999999999 9999999876531 222221 227899999876
Q ss_pred CCeEEEEeccCCCceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEc
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~ 575 (712)
+..+++.. ...++|||-.+++.+..... ..++++|+-|++..++++-.
T Consensus 285 q~~v~S~D----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 285 QNKVVSMD----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred CceEEecc----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence 45566654 57899999999999887543 56899999999999998877
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=127.13 Aligned_cols=252 Identities=13% Similarity=0.242 Sum_probs=162.2
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc-------cCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA-------NTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~-------~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
.+..|...++.++|.|...-|++++.++ +.+|+++ ...+++.+| .|.+ |.|++.++++.++++|+.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D--- 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID--- 365 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC---
Confidence 4556888899999999999999999999 6799983 123455566 3555 9999999999999999999
Q ss_pred CCcCCCccEEEEEEccCC----------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEE
Q 005140 278 NPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYE 346 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd 346 (712)
|+|+.|++... .....+.||.+.+ | .+.+|+ ....|++++ ||+++.|+
T Consensus 366 -------g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav------------w-~l~~s~-~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 366 -------GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV------------W-LLALSS-TKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred -------ceeeeeccCCCCCcccccCcchhccceeccccce------------e-eeeecc-cccceeeecCCceEEeec
Confidence 99999976421 1234556666655 7 489999 888888888 99999999
Q ss_pred cCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEE
Q 005140 347 TESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 424 (712)
Q Consensus 347 ~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 424 (712)
....... .... ..+--..+.+-.....+++ .+. +...+.+...+..
T Consensus 425 ~~~~~~~-~f~~~~e~g~Plsvd~~ss~~a~~~-------~s~--~~~~~~~~~~ev~---------------------- 472 (577)
T KOG0642|consen 425 PTEESPC-TFGEPKEHGYPLSVDRTSSRPAHSL-------ASF--RFGYTSIDDMEVV---------------------- 472 (577)
T ss_pred cCCcCcc-ccCCccccCCcceEeeccchhHhhh-------hhc--ccccccchhhhhh----------------------
Confidence 7754431 1101 1111122222211111111 000 0000000000000
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 425 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
..+.++.-.....+ .....+.-+.++|.+...+++..+. .|+++|..++.
T Consensus 473 ---------------s~~~~~~s~~~~~~-------~~~~~in~vVs~~~~~~~~~~hed~---~Ir~~dn~~~~----- 522 (577)
T KOG0642|consen 473 ---------------SDLLIFESSASPGP-------RRYPQINKVVSHPTADITFTAHEDR---SIRFFDNKTGK----- 522 (577)
T ss_pred ---------------hheeeccccCCCcc-------cccCccceEEecCCCCeeEecccCC---ceecccccccc-----
Confidence 00111111100000 1134566788999999888888888 99999987665
Q ss_pred eEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 505 SKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 505 ~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+++....+ .++++++.|+|-+|++++. |+.+.+|.+....+
T Consensus 523 -~l~s~~a~~~svtslai~~ng~~l~s~s~---d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 523 -ILHSMVAHKDSVTSLAIDPNGPYLMSGSH---DGSVRLWKLDVKTC 565 (577)
T ss_pred -cchheeeccceecceeecCCCceEEeecC---Cceeehhhccchhe
Confidence 45544434 6799999999999999999 99999999874433
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=111.57 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=164.0
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
..|...+..|...++|+.|-.+++ |.+|...| +.+|.+. +...+..+. +. -|+.+.--|+ ..|.+-+.|
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lq-t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd---- 76 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQ-TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRD---- 76 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEee-cCccchhhhhhccceeeceeecCC-cchhhcCCC----
Confidence 345556678999999999998886 78888888 7799999 666554443 33 3888888887 567888888
Q ss_pred CcCCCccEEEEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCC----EEEEecCC--eEEEEEcCCc
Q 005140 279 PRDANRVVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK----YFAKLGKN--MISVYETESF 350 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~----~la~~~d~--~i~iwd~~~~ 350 (712)
..+.+|++.-+..+ +.+.... +.+.-++.++ .++ .++.-+.+ .+.+-|....
T Consensus 77 ------~~L~lw~ia~s~~i~i~Si~~ns-------------lgFCrfSl~~-~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 77 ------PLLILWTIAYSAFISIHSIVVNS-------------LGFCRFSLVK-KPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred ------ceEEEEEccCcceEEEeeeeccc-------------cccccceecc-CCCcchhheecCCcccchhhhhccCcc
Confidence 89999998765432 2222211 1111123333 222 12221111 1222222111
Q ss_pred e--ec--ccccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccce----------eeeeeeeecceeE
Q 005140 351 T--LI--DKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEEL----------RQKNLFSVSDCKM 415 (712)
Q Consensus 351 ~--~~--~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~ 415 (712)
. .+ .....+.+.+.+..|..+ +.+++.. .+..++.+.+|++.+...+ ....-+.....++
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll-----aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKDHACGSTFLLL-----AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred ceeEccCchhccccCceeeeeccccccceEEEE-----EeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 0 00 011123445777775443 4443331 1334445555655543211 1111122223333
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCC--ccee-EEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD--IPIE-VLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~-~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.+.+.-..=+.+..+. .+..|.+.... .++. .+++ .+-.|..+.+-||++.+|+++.|+ .+++
T Consensus 212 dyas~~~rGisgga~d---------kl~~~Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~---RiRV 277 (323)
T KOG0322|consen 212 DYASSCDRGISGGADD---------KLVMYSLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDH---RIRV 277 (323)
T ss_pred eechhhcCCcCCCccc---------cceeeeeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCC---cEEE
Confidence 3332211111111111 14555555431 1111 1222 255688899999999999999999 9999
Q ss_pred EEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 493 YSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
|+.++.. ++..+. ...+++++|+|+...++.++. |++|.+|++
T Consensus 278 yswrtl~------pLAVLkyHsagvn~vAfspd~~lmAaask---D~rISLWkL 322 (323)
T KOG0322|consen 278 YSWRTLN------PLAVLKYHSAGVNAVAFSPDCELMAAASK---DARISLWKL 322 (323)
T ss_pred EEeccCC------chhhhhhhhcceeEEEeCCCCchhhhccC---CceEEeeec
Confidence 9998766 455444 447999999999999999998 999999986
|
|
| >KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-13 Score=119.17 Aligned_cols=76 Identities=26% Similarity=0.349 Sum_probs=66.2
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||+ +...+.|++.|++||+|.+ ..+..|+.||++|||+||+|.+.+.|.+|++..| -.|||| +
T Consensus 13 TKifVggL~w------~T~~~~l~~yFeqfGeI~e--avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR-~ 82 (247)
T KOG0149|consen 13 TKIFVGGLAW------ETHKETLRRYFEQFGEIVE--AVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGR-K 82 (247)
T ss_pred EEEEEcCccc------ccchHHHHHHHHHhCceEE--EEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccccc-c
Confidence 5899999999 4448899999999999999 9999999999999999999999999999999766 346775 5
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
-.||..
T Consensus 83 aNcnlA 88 (247)
T KOG0149|consen 83 ANCNLA 88 (247)
T ss_pred cccchh
Confidence 555543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-10 Score=110.43 Aligned_cols=233 Identities=14% Similarity=0.247 Sum_probs=154.1
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
.+.|.. +...|+.++....++|+................|-.+-||. ..+|+ .+.+.+-++.+++......+
T Consensus 10 ~~~~Nq-d~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvai-----V~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 10 FIGFNQ-DSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAI-----VSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred eeeecc-ceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEE-----EecCCCceEEEEEcccCceE
Confidence 456777 88888888866678888876544222111111244555553 45665 33455556666766665555
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceEEEEEeeCCCEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
.... +......+..+ -+.|++..... +.+|+++.-..- .++. .+.+...+.+++.++.+.++|.-
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~----------IyIydI~~MklL-hTI~t~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES----------IYIYDIKDMKLL-HTIETTPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc----------EEEEecccceee-hhhhccCCCccceEeeccCCCCceEEec
Confidence 4443 33344433333 34555554432 578888754322 2222 33456667778888788899886
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCce-EEEEECCcceeeeeccc---
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQ-LEFYNVDELETMATAEH--- 555 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~-v~iwd~~~~~~~~~~~~--- 555 (712)
+... ...|.+||..+-. ++..+.. +++.+++|||+|.+||+++. .|+ |++|.+.+|+.+.....
T Consensus 148 ~s~t-~GdV~l~d~~nl~------~v~~I~aH~~~lAalafs~~G~llATASe---KGTVIRVf~v~~G~kl~eFRRG~~ 217 (391)
T KOG2110|consen 148 GSTT-SGDVVLFDTINLQ------PVNTINAHKGPLAALAFSPDGTLLATASE---KGTVIRVFSVPEGQKLYEFRRGTY 217 (391)
T ss_pred CCCC-CceEEEEEcccce------eeeEEEecCCceeEEEECCCCCEEEEecc---CceEEEEEEcCCccEeeeeeCCce
Confidence 5421 1289999986533 5555554 47999999999999999997 665 79999999988876433
Q ss_pred -cceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 556 -FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 556 -~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
..|.+++|+|++++|++.+. .++|.||.+...
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~-----TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSN-----TETVHIFKLEKV 250 (391)
T ss_pred eeEEEEEEECCCCCeEEEecC-----CCeEEEEEeccc
Confidence 46789999999999999998 899999998743
|
|
| >PF00076 RRM_1: RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=99.92 Aligned_cols=69 Identities=33% Similarity=0.551 Sum_probs=63.3
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
|||+|||. +..+..|+++|++||.|.. +.++.+ .+++++|||||+|.+.++|.+|++.+||+.+.++ .+
T Consensus 1 l~v~nlp~------~~t~~~l~~~f~~~g~i~~--~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~-~i 69 (70)
T PF00076_consen 1 LYVGNLPP------DVTEEELRDFFSQFGKIES--IKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR-KI 69 (70)
T ss_dssp EEEESETT------TSSHHHHHHHHHTTSTEEE--EEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE-EE
T ss_pred cEEcCCCC------cCCHHHHHHHHHHhhhccc--cccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc-Cc
Confidence 79999997 5559999999999999999 999998 4899999999999999999999999999999874 44
|
(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A .... |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-11 Score=112.57 Aligned_cols=268 Identities=15% Similarity=0.232 Sum_probs=165.6
Q ss_pred cEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 226 TYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 226 ~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
+.+|++..+| |+|||.. +++.+..|. ++ .+..+.|.. ...-+.+++.| |+|++||+++......
T Consensus 41 ~~vav~lSngsv~lyd~~-tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD----------G~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG-TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD----------GTVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEecc-chhhhheecCCCCcccceEEecCCCCCeeEEeccC----------CeEEEEEeecchhhhh
Confidence 5678877777 8999999 777777764 33 377888877 45678899999 9999999987765444
Q ss_pred c--cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-----CCeEEEEEcCCcee-cccc-cccccCeeeEEECCC
Q 005140 301 F--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----KNMISVYETESFTL-IDKK-SLKVENVMDFSWSPT 371 (712)
Q Consensus 301 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-----d~~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~sp~ 371 (712)
+ .++.... +.++.-.. .++.++++. +-.+.+||++..+. +... ..|.+.|+++.|+|.
T Consensus 110 ~~~~~~~~~~------------f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 110 ISWTQQSGTP------------FICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred eeccCCCCCc------------ceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 3 3333111 21455554 667888776 56799999986654 4333 247788999999998
Q ss_pred CC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 372 DP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 372 ~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
+. .|++ |+.|+-+.|+....+... .
T Consensus 177 ~pnlLlS-----GSvDGLvnlfD~~~d~Ee---------------------D---------------------------- 202 (376)
T KOG1188|consen 177 DPNLLLS-----GSVDGLVNLFDTKKDNEE---------------------D---------------------------- 202 (376)
T ss_pred CCCeEEe-----ecccceEEeeecCCCcch---------------------h----------------------------
Confidence 65 4555 666665554332221100 0
Q ss_pred CcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCce---------eE---
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA---------NA--- 517 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v---------~~--- 517 (712)
..+..-+|...|..+.|..++ ++|.+.+... +..+|+++.+... ..+....+ ++
T Consensus 203 ----aL~~viN~~sSI~~igw~~~~ykrI~clTH~E---tf~~~ele~~~~~------~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 203 ----ALLHVINHGSSIHLIGWLSKKYKRIMCLTHME---TFAIYELEDGSEE------TWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred ----hHHHhhcccceeeeeeeecCCcceEEEEEccC---ceeEEEccCCChh------hcccCccchhhhHHhhhhhhhe
Confidence 001122456779999999877 3455555555 6999999776521 11111100 00
Q ss_pred E-EEcc-CCCeEEEEeccCCCceEEEEE-CCcceeee------eccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 518 L-FWSP-SGRFIVLAGLKGFNGQLEFYN-VDELETMA------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 518 l-~~sp-dg~~l~~~~~~~~dg~v~iwd-~~~~~~~~------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+ ..+| ++..+++++.....+.+.... ..++.... .+|..-|.++.|...+..+.||+. ||.+.+|.
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE-----DG~l~~Wk 344 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE-----DGLLQAWK 344 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC-----CceEEEEe
Confidence 1 1233 344555554311123333332 23332221 234567889999999999999999 99999998
Q ss_pred e
Q 005140 589 F 589 (712)
Q Consensus 589 ~ 589 (712)
.
T Consensus 345 ~ 345 (376)
T KOG1188|consen 345 V 345 (376)
T ss_pred c
Confidence 6
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-10 Score=120.19 Aligned_cols=261 Identities=11% Similarity=0.130 Sum_probs=165.7
Q ss_pred cEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee--cccc----
Q 005140 285 VVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL--IDKK---- 356 (712)
Q Consensus 285 ~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~--~~~~---- 356 (712)
+.+.||++... .+-..+....... ++.|+|-+..++|.|. +|.|.+||+..+.. ....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~--------------~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~ 287 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVT--------------CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE 287 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCcee--------------EEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc
Confidence 36889998765 4445555444433 7899983344555555 99999999986654 2211
Q ss_pred cccccCeeeEEECCCCC--eEEEEeecCCCCCCCeEEEEEecCCc---cceeeee-------eeeecceeEEECcCC-CE
Q 005140 357 SLKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPSK---EELRQKN-------LFSVSDCKMYWQSSG-DY 423 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~-------~~~~~~~~~~~s~~g-~~ 423 (712)
..|...+..+.|-.+-. -+++ ++.|+.+..|..+.-.. ..+.... -.......+.|.+.. ..
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s-----~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFS-----LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEE-----EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 23555688888876533 3555 55788888776554322 1111111 122334456666644 45
Q ss_pred EEEEEcccccccccccccEEEEEEecCCccee-------EEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIE-------VLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+++++..+. ++.....+.... ......|.++|.++.++|=+..+...++|- +|+||...
T Consensus 363 FiVGTe~G~-----------v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW---~vriWs~~ 428 (555)
T KOG1587|consen 363 FIVGTEEGK-----------VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW---TVRIWSED 428 (555)
T ss_pred EEEEcCCcE-----------EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc---eeEecccc
Confidence 666776654 333222111111 123447899999999999888777777788 89999975
Q ss_pred cccccCceeEEEEeCCC--ceeEEEEccCCCeEEE-EeccCCCceEEEEECCcce--eeee--ccccceeeEEECCCCCE
Q 005140 497 TAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVL-AGLKGFNGQLEFYNVDELE--TMAT--AEHFMATDVEWDPTGRY 569 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~-~~~~~~dg~v~iwd~~~~~--~~~~--~~~~~v~~~~~spdg~~ 569 (712)
.... ++..+..+ .+++++|||--.-+++ +.. +|.|.|||+.... .+.+ .+....+.+.|+++|+.
T Consensus 429 ~~~~-----Pl~~~~~~~~~v~~vaWSptrpavF~~~d~---~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~ 500 (555)
T KOG1587|consen 429 VIAS-----PLLSLDSSPDYVTDVAWSPTRPAVFATVDG---DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKL 500 (555)
T ss_pred CCCC-----cchhhhhccceeeeeEEcCcCceEEEEEcC---CCceehhhhhccccCCcccccccccccceeecCCCCcE
Confidence 3222 44444432 5899999997655444 444 8999999997322 2222 23456678999999999
Q ss_pred EEEEEccceeccccEEEEEecC
Q 005140 570 VATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g 591 (712)
|++|.. .|.+.+|++..
T Consensus 501 lavGd~-----~G~~~~~~l~~ 517 (555)
T KOG1587|consen 501 LAVGDA-----NGTTHILKLSE 517 (555)
T ss_pred EEEecC-----CCcEEEEEcCc
Confidence 999999 89999999863
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=112.64 Aligned_cols=226 Identities=13% Similarity=0.169 Sum_probs=160.4
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
...|++.+|++|...+|+ +-.+..+.|+...... .+.....+.+......+.|+|.++.|++++.+..
T Consensus 10 ~~pitchAwn~drt~iAv-----~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn------ 78 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAV-----SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN------ 78 (361)
T ss_pred cCceeeeeecCCCceEEe-----ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC------
Confidence 456999999999999998 5556666666665555 4455555666666667899999999999888765
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEE
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 518 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l 518 (712)
-.+|.....+.=...+.+..++..++++.|+|.++.||++++.. .|.+|-++..+.=--.+.++.-....|+++
T Consensus 79 ---ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sl 152 (361)
T KOG1523|consen 79 ---AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSL 152 (361)
T ss_pred ---ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeee
Confidence 46777654443334445556699999999999999999999877 888888754332100011222113358999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECC-----c-------------ceeeee--ccccceeeEEECCCCCEEEEEEccce
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVD-----E-------------LETMAT--AEHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~-----~-------------~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
.|+|++-.|+.|+. |+..++|..- . |+++.. ...+.+..+.|+|+|..|+..+.
T Consensus 153 dWhpnnVLlaaGs~---D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H--- 226 (361)
T KOG1523|consen 153 DWHPNNVLLAAGST---DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH--- 226 (361)
T ss_pred eccCCcceeccccc---CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---
Confidence 99999999999998 9999998642 1 333333 34477889999999999999999
Q ss_pred eccccEEEEEecCce--eeee--cccceeeeEEecC
Q 005140 579 EMENGFNIWSFNGKL--LYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 579 ~~d~~v~iw~~~g~~--~~~~--~~~~i~~~~w~p~ 610 (712)
|..+.+-|..+.. +... ..-+..++.|-..
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred --CCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 9999999987653 2221 1234556666443
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-12 Score=134.29 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=73.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+.+.+|||+|||. +..++.|+++|++||.|.+ +.|+.|+.||.+||||||+|.+.++|.+|+..|||+.+++
T Consensus 267 ~~~~~lfV~NL~~------~~~e~~L~~~F~~fG~v~~--v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 267 GAGYCIFVYNLSP------DTDETVLWQLFGPFGAVQN--VKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CCCcEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456899999997 4459999999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 339 r-~i~V~~~~~ 348 (352)
T TIGR01661 339 R-VLQVSFKTN 348 (352)
T ss_pred e-EEEEEEccC
Confidence 6 888876543
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-12 Score=125.37 Aligned_cols=251 Identities=13% Similarity=0.208 Sum_probs=176.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
-+...+.++.+|++|+.|+.. |.|-.+|..++++...+....... .+.|-. +.++
T Consensus 130 FGPY~~~ytrnGrhlllgGrK----------GHlAa~Dw~t~~L~~Ei~v~Etv~--------------Dv~~LH-neq~ 184 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRK----------GHLAAFDWVTKKLHFEINVMETVR--------------DVTFLH-NEQF 184 (545)
T ss_pred cCCeeeeecCCccEEEecCCc----------cceeeeecccceeeeeeehhhhhh--------------hhhhhc-chHH
Confidence 357889999999999999999 999999999999888876654433 578888 9999
Q ss_pred EEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 334 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 334 la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
||.+..+.+.|||-..-++- .. -....|..+.|-|---.|+. ++. .+.+.-.|+..++.+..
T Consensus 185 ~AVAQK~y~yvYD~~GtElH-Cl-k~~~~v~rLeFLPyHfLL~~-----~~~--~G~L~Y~DVS~GklVa~--------- 246 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNNGTELH-CL-KRHIRVARLEFLPYHFLLVA-----ASE--AGFLKYQDVSTGKLVAS--------- 246 (545)
T ss_pred HHhhhhceEEEecCCCcEEe-eh-hhcCchhhhcccchhheeee-----ccc--CCceEEEeechhhhhHH---------
Confidence 99999999999997643332 22 22345888899997666665 333 33332333322221111
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
+....+.+..++-+|-...+.+|...| +|.+|
T Consensus 247 ---------------------------------------------~~t~~G~~~vm~qNP~NaVih~GhsnG---tVSlW 278 (545)
T KOG1272|consen 247 ---------------------------------------------IRTGAGRTDVMKQNPYNAVIHLGHSNG---TVSLW 278 (545)
T ss_pred ---------------------------------------------HHccCCccchhhcCCccceEEEcCCCc---eEEec
Confidence 111256666777888888888888888 99999
Q ss_pred EeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc-cceeeEEECCCCCEE
Q 005140 494 SMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYV 570 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l 570 (712)
...... ++..+- .++|+++++.++|+|+++++. |..++|||++....+.+.+. .....+++|..|- |
T Consensus 279 SP~ske------PLvKiLcH~g~V~siAv~~~G~YMaTtG~---Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-L 348 (545)
T KOG1272|consen 279 SPNSKE------PLVKILCHRGPVSSIAVDRGGRYMATTGL---DRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-L 348 (545)
T ss_pred CCCCcc------hHHHHHhcCCCcceEEECCCCcEEeeccc---ccceeEeeeccccccceeecCCCccccccccccc-e
Confidence 986544 333332 347999999999999999998 99999999998887776544 6677899998774 3
Q ss_pred EEEEccceeccccEEEEE--ecCc----eeeeec--ccceeeeEEecCC
Q 005140 571 ATAVTSVHEMENGFNIWS--FNGK----LLYRTL--KDHFFQFLWRPRP 611 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~--~~g~----~~~~~~--~~~i~~~~w~p~~ 611 (712)
|.+. ...+.||. +.+. ..+-.| .+.|..+.|.|-.
T Consensus 349 A~~~------G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 349 ALSY------GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred eeec------CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 3333 35899995 2222 222122 2577788888853
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-10 Score=118.58 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=134.4
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG 314 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~ 314 (712)
+.+-|.++...+..... .......|||||+. ++..+... ....|.++|+.+|+............
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~-------~~~~Iyv~dl~tg~~~~lt~~~g~~~------ 236 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGE-------RKPTLYKYNLYTGKKEKIASSQGMLV------ 236 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccC-------CCCEEEEEECCCCcEEEEecCCCcEE------
Confidence 44556663333333333 25778999999986 55444331 11479999998887544333222121
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
...||| ||+.++... +..|.++++.++.... ............|+|||+.|++... ..+...
T Consensus 237 --------~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sd----r~g~~~ 302 (419)
T PRK04043 237 --------VSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSD----RLGYPN 302 (419)
T ss_pred --------eeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEEC----CCCCce
Confidence 468999 998777554 4568888887665332 1111112345689999999988432 345568
Q ss_pred EEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
|+.+++......+.. .... ....|+|+|++|++........ ...+...||.++..+.....++. ........
T Consensus 303 Iy~~dl~~g~~~rlt-~~g~--~~~~~SPDG~~Ia~~~~~~~~~--~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~ 374 (419)
T PRK04043 303 IFMKKLNSGSVEQVV-FHGK--NNSSVSTYKNYIVYSSRETNNE--FGKNTFNLYLISTNSDYIRRLTA---NGVNQFPR 374 (419)
T ss_pred EEEEECCCCCeEeCc-cCCC--cCceECCCCCEEEEEEcCCCcc--cCCCCcEEEEEECCCCCeEECCC---CCCcCCeE
Confidence 888888765432211 1111 1247999999999877643210 00012456666544444333332 23344689
Q ss_pred EeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 471 WEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
|+|||+.+++....+....+.+++++.
T Consensus 375 ~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 999999999988766544577777743
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=108.82 Aligned_cols=230 Identities=13% Similarity=0.169 Sum_probs=156.7
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCce---ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE-ecC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFT---LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV-QIP 397 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~-~~~ 397 (712)
+.+|++ |...+|.+. ++.|.||...... ..+..+.|...|++++|+|..+.|++ ++.|....||.. +-.
T Consensus 15 chAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt-----cs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 15 CHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT-----CSHDRNAYVWTQPSGG 88 (361)
T ss_pred eeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE-----ccCCCCccccccCCCC
Confidence 789999 999999888 7799999987554 44455667778999999999999999 888888887766 333
Q ss_pred CccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC-cceeEEEecCCCCceEEEEEeeCCC
Q 005140 398 SKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
..++.....-++.....+.|+|.++.+++++.... +.++.+.... -=+....-..+...|.+++|+|++-
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~---------isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL---------ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccE---------EEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 33333333334555667899999999999988766 3333332211 0000001113478899999999999
Q ss_pred EEEEEEcCCCCCeEEEEEee-----cccccCc------e-eEEEE--eCCCceeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 477 RFAVIHGDSPRPDISFYSMR-----TAQHAGR------V-SKLTT--LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~-----~~~~~~~------~-~~~~~--~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
.+++++.|+ ..++|..- ....... + .++.. ..++.+..+.|+|+|..|+..+. |+.+.+-
T Consensus 160 LlaaGs~D~---k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H---ds~v~~~ 233 (361)
T KOG1523|consen 160 LLAAGSTDG---KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH---DSTVSFV 233 (361)
T ss_pred eecccccCc---ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---CCceEEe
Confidence 999999998 78888642 1110000 0 01112 23456889999999999999998 9999999
Q ss_pred ECCcce-eeee--ccccceeeEEECCCCCEEEEE
Q 005140 543 NVDELE-TMAT--AEHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 543 d~~~~~-~~~~--~~~~~v~~~~~spdg~~l~t~ 573 (712)
|..... .+.+ ...-+..++.|-.+...++.+
T Consensus 234 da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 234 DAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred ecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 987553 2222 223666778887765544443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-09 Score=105.09 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=129.1
Q ss_pred EcC-CCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc-EEEEEEccCCcee
Q 005140 221 WSP-LGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV-VINIFDVRTGKVM 298 (712)
Q Consensus 221 ~Sp-dg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~-~I~iwd~~~g~~~ 298 (712)
|++ +|.++|+.+.....|.+.. .+-.+..-+..+|....++-+++-++.|..| | .+-|+|..+++..
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~-~~~~iqv~~~~~VrY~r~~~~~e~~vigt~d----------gD~l~iyd~~~~e~k 395 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPW-DGYSIQVGKKGGVRYRRIQVDPEGDVIGTND----------GDKLGIYDKDGGEVK 395 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCC-CCeeEEcCCCCceEEEEEccCCcceEEeccC----------CceEEEEecCCceEE
Confidence 664 7999999999887666655 3333333344459999999998888888888 5 7999998777644
Q ss_pred eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEE
Q 005140 299 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
+ +...-+.+- ++..++ +|++++.+. ...|.++|+++++..-.-....+-|..+.|||++++||+
T Consensus 396 r-~e~~lg~I~-------------av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 396 R-IEKDLGNIE-------------AVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred E-eeCCccceE-------------EEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEE
Confidence 4 444433331 689999 999999888 788999999988754332234445999999999999999
Q ss_pred EeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 378 FVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 378 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
..|+ +--...|.++++...+.....+ ....+.+.+|.|+|++|.+.+.+.
T Consensus 461 afP~---gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 461 AFPE---GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred ecCc---ceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEeccc
Confidence 6653 2333456677777666544333 334455668999999998877654
|
|
| >KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-12 Score=113.13 Aligned_cols=76 Identities=26% Similarity=0.494 Sum_probs=68.8
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
..|-|+||-.- ..-+.|+.+|++||.|-+ |+||.|+.|+.++|||||.|....+|+.|++.|+|..||++ -
T Consensus 14 ~SLkVdNLTyR------Tspd~LrrvFekYG~vgD--VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR-e 84 (256)
T KOG4207|consen 14 TSLKVDNLTYR------TSPDDLRRVFEKYGRVGD--VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR-E 84 (256)
T ss_pred eeEEecceecc------CCHHHHHHHHHHhCcccc--eecccccccccccceeEEEeeecchHHHHHHhhcceeeccc-e
Confidence 37899999973 337889999999999999 99999999999999999999999999999999999999996 6
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
|.|..
T Consensus 85 lrVq~ 89 (256)
T KOG4207|consen 85 LRVQM 89 (256)
T ss_pred eeehh
Confidence 66654
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-12 Score=125.96 Aligned_cols=80 Identities=21% Similarity=0.413 Sum_probs=72.4
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-+++|||.|||. +..+++|+++|++||.|++ |.|+.|+.|+++||||||+|.++++|++|++.|||..+.
T Consensus 104 ~~~~~~LfVgnLp~------~~te~~L~~lF~~~G~V~~--v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 104 NNSGTNLIVNYLPQ------DMTDRELYALFRTIGPINT--CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCCCcEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 33578999999997 5669999999999999999 999999999999999999999999999999999999998
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
++ .++|..
T Consensus 176 gr-~i~V~~ 183 (346)
T TIGR01659 176 NK-RLKVSY 183 (346)
T ss_pred Cc-eeeeec
Confidence 75 666654
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=117.60 Aligned_cols=255 Identities=16% Similarity=0.253 Sum_probs=163.4
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCe-------EEEE
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA-------RVSL 393 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~-------~i~~ 393 (712)
.+..|| ||+|+.+.+ .-.|++||+....+-....+....|.-.-++.|-..+++.. .|..+ +-+.
T Consensus 56 ~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-----~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 56 RIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-----NDRTIEFHAKYGRHYR 129 (703)
T ss_pred eeEecC-CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-----cCceeeehhhcCeeee
Confidence 689999 999987777 88999999987665433333334454444454434344321 22221 1111
Q ss_pred EecCCccceeeeeeeeecceeEEEC-cCCCEEEEEEcccccccccccccEEEEEEecCC-cceeEEEecCCCCceEEEEE
Q 005140 394 VQIPSKEELRQKNLFSVSDCKMYWQ-SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~h~~~v~~~~~ 471 (712)
..+|.. ...|.++ |+...+++++. ..+|++.... .-...+.. ..+.++++..
T Consensus 130 ~RIP~~------------GRDm~y~~~scDly~~gsg------------~evYRlNLEqGrfL~P~~~--~~~~lN~v~i 183 (703)
T KOG2321|consen 130 TRIPKF------------GRDMKYHKPSCDLYLVGSG------------SEVYRLNLEQGRFLNPFET--DSGELNVVSI 183 (703)
T ss_pred eecCcC------------CccccccCCCccEEEeecC------------cceEEEEcccccccccccc--ccccceeeee
Confidence 112111 1112222 33444444444 3678777533 22222333 2478999999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-------ceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++....|++|+.+| .|.+||.+.......+....++..+ .|+++.|+.+|-.+++|.. .|.+.|||+
T Consensus 184 n~~hgLla~Gt~~g---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---~G~v~iyDL 257 (703)
T KOG2321|consen 184 NEEHGLLACGTEDG---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---TGSVLIYDL 257 (703)
T ss_pred cCccceEEecccCc---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---CCcEEEEEc
Confidence 99999999999899 9999999876543222222222211 3899999999999999998 999999999
Q ss_pred Ccceeeee-ccc--cceeeEEECCC--CCEEEEEEccceeccccEEEEEec-Cceeeee-cccceeeeEEecCCCCCCCh
Q 005140 545 DELETMAT-AEH--FMATDVEWDPT--GRYVATAVTSVHEMENGFNIWSFN-GKLLYRT-LKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 545 ~~~~~~~~-~~~--~~v~~~~~spd--g~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~-~~~~i~~~~w~p~~~~l~s~ 617 (712)
+..+.+.. .|. .+|..+.|-+. +..|++... ..++||+-. |..+... +...+..+++-|++-.++++
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk------~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK------RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEecch------HHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 98776654 333 67889999876 345555554 789999965 6655544 44668899999988777766
Q ss_pred hhHH
Q 005140 618 EKEE 621 (712)
Q Consensus 618 ~~d~ 621 (712)
-+..
T Consensus 332 ne~~ 335 (703)
T KOG2321|consen 332 NESS 335 (703)
T ss_pred cCCC
Confidence 5443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-08 Score=102.25 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=162.0
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-----------CCeEEEEEcCCceec
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----------KNMISVYETESFTLI 353 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-----------d~~i~iwd~~~~~~~ 353 (712)
++|.+.|..+++.+..+....... ...|| |++.|+.+. +..|.+||+.+++.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---------------~~~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---------------PVVAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---------------eeECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 579999999999988887665443 34899 998665443 588999999999887
Q ss_pred cccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc-------eeEEECc
Q 005140 354 DKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD-------CKMYWQS 419 (712)
Q Consensus 354 ~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~ 419 (712)
...... ......+++||||++|.+ ...+....|.++|+.+++.+.......... ..+....
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V-----~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~ 165 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLF-----YQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCR 165 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEE-----ecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEee
Confidence 655432 122458999999999987 334446788899999988776655321100 0011123
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
||..+.+..++..+ .......+++-.. . .+ ...+ .+++ +|+++.+... | +|++.|+...
T Consensus 166 Dg~~~~v~~d~~g~---~~~~~~~vf~~~~--~-----~v--~~rP----~~~~~dg~~~~vs~e-G---~V~~id~~~~ 225 (352)
T TIGR02658 166 DGSLAKVGYGTKGN---PKIKPTEVFHPED--E-----YL--INHP----AYSNKSGRLVWPTYT-G---KIFQIDLSSG 225 (352)
T ss_pred cCceEEEEecCCCc---eEEeeeeeecCCc--c-----cc--ccCC----ceEcCCCcEEEEecC-C---eEEEEecCCC
Confidence 33333222222110 0000011111000 0 00 0111 4456 7777666655 7 8999996442
Q ss_pred cccCceeEEEEeC---------CCceeEEEEccCCCeEEEEeccC-------CCceEEEEECCcceeeeecc-ccceeeE
Q 005140 499 QHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLAGLKG-------FNGQLEFYNVDELETMATAE-HFMATDV 561 (712)
Q Consensus 499 ~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~~~~~~~-------~dg~v~iwd~~~~~~~~~~~-~~~v~~~ 561 (712)
... ....+..+. ......++++|+|+.++++..+. ..+.|.++|..+++.+.... ...+..+
T Consensus 226 ~~~-~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~i 304 (352)
T TIGR02658 226 DAK-FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSI 304 (352)
T ss_pred cce-ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeE
Confidence 211 011222221 11123499999999998854321 13689999999999988744 3578899
Q ss_pred EECCCCC-EEEEEEccceeccccEEEEEec-Cceeeee
Q 005140 562 EWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 562 ~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
++||||+ +|++.... ++.|.+.|.. ++.+...
T Consensus 305 avS~Dgkp~lyvtn~~----s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 305 NVSQDAKPLLYALSTG----DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCCCeEEEEeCCC----CCcEEEEECcCCeEEeee
Confidence 9999999 66655532 6889999986 4455554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-12 Score=132.45 Aligned_cols=79 Identities=33% Similarity=0.500 Sum_probs=72.9
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
...+.|||+|||. +..++.|+++|++||.|.+ |.|++|+.||++||||||+|.+.++|.+|++.|||..+++
T Consensus 105 ~~~~rLfVGnLp~------~~tEe~Lr~lF~~fG~I~s--V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G 176 (612)
T TIGR01645 105 AIMCRVYVGSISF------ELREDTIRRAFDPFGPIKS--INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 176 (612)
T ss_pred cCCCEEEEcCCCC------CCCHHHHHHHHHccCCEEE--EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence 4678999999997 5559999999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
+ .++|..
T Consensus 177 R-~IkV~r 183 (612)
T TIGR01645 177 R-NIKVGR 183 (612)
T ss_pred c-eeeecc
Confidence 5 788764
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-12 Score=115.25 Aligned_cols=74 Identities=30% Similarity=0.506 Sum_probs=68.9
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||.-|+. +..|..|++.|++||.|+. |.|+.|..||++||||||+|+++.+...|.+..+|.+|+++.+
T Consensus 102 ~TLFv~RLny------dT~EskLrreF~~YG~Ikr--irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 102 KTLFVARLNY------DTSESKLRREFEKYGPIKR--IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ceeeeeeccc------cccHHHHHHHHHhcCccee--EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 7999999998 5558889999999999999 9999999999999999999999999999999999999999754
Q ss_pred EE
Q 005140 140 FA 141 (712)
Q Consensus 140 l~ 141 (712)
+.
T Consensus 174 ~V 175 (335)
T KOG0113|consen 174 LV 175 (335)
T ss_pred EE
Confidence 44
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-09 Score=119.61 Aligned_cols=158 Identities=10% Similarity=0.062 Sum_probs=106.4
Q ss_pred ecCCCCCCCcccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecc------cCcceeeeec--CCCeeEEEecCCCC
Q 005140 197 WNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGA------NTFNRLMRYA--HPQVKLIDFSPGEK 266 (712)
Q Consensus 197 w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~------~~~~~~~~~~--~~~v~~i~~Spdg~ 266 (712)
|+. .+..+..+..|...+..++.|+. +.+++||+.|| |++|+.. ++.+...+++ ...+.++.+.+.|.
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 666 57777788899988888888765 59999999999 7899865 1223334444 23499999999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCC--c-----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec
Q 005140 267 YLVTYSSHEPSNPRDANRVVINIFDVRTG--K-----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG 338 (712)
Q Consensus 267 ~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~ 338 (712)
++|.++.| |.|.+.++.-. . ..+....+.... +.. .-++....+. .++.+.
T Consensus 1112 ~~Av~t~D----------G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~-------vv~----m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1112 QFAVSTKD----------GSVRVLRIDHYNVSKRVATQVRIPNLKKDGV-------VVS----MHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred eEEEEcCC----------CeEEEEEccccccccceeeeeecccccCCCc-------eEE----eecccccccceeEEEEE
Confidence 99999999 99999998542 1 122222222211 111 1223221333 566666
Q ss_pred -CCeEEEEEcCCceecccc--cccccCeeeEEECCCCCeEEE
Q 005140 339 -KNMISVYETESFTLIDKK--SLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~ 377 (712)
.+.|..||+.....+... ....+-|++++.+|.++.++.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 788999999866544433 234456899999999888887
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=102.30 Aligned_cols=238 Identities=10% Similarity=0.194 Sum_probs=147.7
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC----CCeEEEEEecCC
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN----QPARVSLVQIPS 398 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~----~~~~i~~~~~~~ 398 (712)
.++|.. |..-++.+.+...+||+++-.+.......+.+++.-+..---.++|+.. ||+. .+.++.+||-..
T Consensus 10 svs~NQ-D~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLV----GGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 10 SVSFNQ-DHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALV----GGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred EEEEcc-CCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEe----cCCCCCCCCCceEEEEeccc
Confidence 578998 9999999999999999998654433333333332222222234677764 3333 345788888555
Q ss_pred ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEE
Q 005140 399 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 478 (712)
.+.+.... +...+..+...+ ..|++..... +.+|....+-.....+..........+++-+.+...|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r--~riVvvl~~~----------I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRR--DRIVVVLENK----------IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred CcEEEEEE-eccceeeEEEcC--CeEEEEecCe----------EEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 55554444 233333333333 3444443321 5666665443333333322212223333333233444
Q ss_pred EEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCce-EEEEECCcceeeee----
Q 005140 479 AVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQ-LEFYNVDELETMAT---- 552 (712)
Q Consensus 479 ~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~-v~iwd~~~~~~~~~---- 552 (712)
|+-+. -| .|+|-|+...... ...+-.-+...|.+++.+-+|..+|+++. .|+ |+|||..+++.+..
T Consensus 152 afPg~k~G---qvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 152 AFPGFKTG---QVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EcCCCccc---eEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCCCcEeeeeecC
Confidence 44333 34 8999998654321 01222223447999999999999999997 666 79999999988875
Q ss_pred ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 553 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
..+..+.+++|||++.+||++|. .|++.|+.+..
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSd-----KgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSD-----KGTLHIFSLRD 257 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcC-----CCeEEEEEeec
Confidence 34468899999999999999999 89999998865
|
|
| >PF14259 RRM_6: RNA recognition motif (a | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=93.26 Aligned_cols=68 Identities=25% Similarity=0.521 Sum_probs=61.7
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
|+|+|||. ...+++|+++|+.||.|.. +.++.++. |.++|+|||+|.++++|.+|++.++|..+++++
T Consensus 1 v~i~nlp~------~~~~~~l~~~f~~~g~v~~--v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPP------STTEEDLRNFFSRFGPVEK--VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTT------T--HHHHHHHCTTSSBEEE--EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCC------CCCHHHHHHHHHhcCCcce--EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 79999997 4458899999999999999 99999986 999999999999999999999999999998863
|
k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A .... |
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=128.42 Aligned_cols=77 Identities=31% Similarity=0.512 Sum_probs=71.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||+|.+ |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..+.++
T Consensus 3 ~~~l~V~nLp~------~~~e~~l~~~F~~~G~i~~--v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~- 73 (352)
T TIGR01661 3 KTNLIVNYLPQ------TMTQEEIRSLFTSIGEIES--CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK- 73 (352)
T ss_pred CcEEEEeCCCC------CCCHHHHHHHHHccCCEEE--EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe-
Confidence 46999999997 5559999999999999999 99999999999999999999999999999999999999886
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 74 ~i~v~~ 79 (352)
T TIGR01661 74 TIKVSY 79 (352)
T ss_pred eEEEEe
Confidence 777764
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=104.49 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=66.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
...++|||+||+. .+.+.+|..+|+.||.|.. ++|... +-|||||+|+++.+|+.|+..|||..|.+
T Consensus 8 ~~~~kVYVGnL~~------~a~k~eLE~~F~~yG~lrs--vWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 8 NGNTKVYVGNLGS------RATKRELERAFSKYGPLRS--VWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred CCCceEEeccCCC------CcchHHHHHHHHhcCccee--EEEeec-----CCCceEEeccCcccHHHHHhhcCCccccC
Confidence 4678999999997 5569999999999999999 999874 56899999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
. .+.|-+-.
T Consensus 75 ~-r~rVE~S~ 83 (195)
T KOG0107|consen 75 S-RIRVELST 83 (195)
T ss_pred c-eEEEEeec
Confidence 6 66666544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-10 Score=114.12 Aligned_cols=340 Identities=17% Similarity=0.229 Sum_probs=204.0
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCc---c--e---ee------ee-cCC-CeeEEEecCCCCEEEEEcCCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTF---N--R---LM------RY-AHP-QVKLIDFSPGEKYLVTYSSHEP 276 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~---~--~---~~------~~-~~~-~v~~i~~Spdg~~l~t~s~d~~ 276 (712)
....|+.|+....|||+|+.+| ++|..+.+.. + . .. ++ +|. .|..+.|+-..+.|-|...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~-- 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS-- 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC--
Confidence 3567999999999999999999 6676543110 0 0 00 11 244 49999999999999888888
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 354 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~ 354 (712)
|.|.||-+-.|.....+..... .+ -.+++|.. ||+.|+..- ||.|.|=.++.. .+.
T Consensus 93 --------GlIiVWmlykgsW~EEMiNnRnKSv------------V~SmsWn~-dG~kIcIvYeDGavIVGsvdGN-RIw 150 (1189)
T KOG2041|consen 93 --------GLIIVWMLYKGSWCEEMINNRNKSV------------VVSMSWNL-DGTKICIVYEDGAVIVGSVDGN-RIW 150 (1189)
T ss_pred --------ceEEEEeeecccHHHHHhhCcCccE------------EEEEEEcC-CCcEEEEEEccCCEEEEeeccc-eec
Confidence 9999999988876554433222 11 01689999 999988887 998887776643 333
Q ss_pred cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-------c-ceeeeee---eeecceeEEE------
Q 005140 355 KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK-------E-ELRQKNL---FSVSDCKMYW------ 417 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~-------~-~~~~~~~---~~~~~~~~~~------ 417 (712)
.+.++..-...+.||+|...+++ +-.++. +.+|+.... . .+..... +......+.|
T Consensus 151 gKeLkg~~l~hv~ws~D~~~~Lf-----~~ange--~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 151 GKELKGQLLAHVLWSEDLEQALF-----KKANGE--THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred chhcchheccceeecccHHHHHh-----hhcCCc--EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 44344444668899999887776 434444 444444321 0 1111111 1111223344
Q ss_pred --CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC------CCe
Q 005140 418 --QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP------RPD 489 (712)
Q Consensus 418 --s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~------~~~ 489 (712)
-|+-..|+++..++. .++.+-.....|+- +.. .-.+....|+|+|..||+++.+.. .+.
T Consensus 224 ~v~pdrP~lavcy~nGr---------~QiMR~eND~~Pvv-~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~ 290 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGR---------MQIMRSENDPEPVV-VDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK 290 (1189)
T ss_pred cCCCCCCEEEEEEcCce---------ehhhhhcCCCCCeE-Eec---ccEeecceecCCCcEEEEccCcccccCccccce
Confidence 256678888877765 44544433333321 222 357888999999999999987532 236
Q ss_pred EEEEEeecccccCceeEEEEe--CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCC
Q 005140 490 ISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTG 567 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg 567 (712)
|.+|..-.. .+.++ ++..|++++|-..|-.++.+. |+.|+|-+++-- ..|..-.
T Consensus 291 v~Fysp~G~-------i~gtlkvpg~~It~lsWEg~gLriA~Av----dsfiyfanIRP~-------------ykWgy~e 346 (1189)
T KOG2041|consen 291 VHFYSPYGH-------IVGTLKVPGSCITGLSWEGTGLRIAIAV----DSFIYFANIRPE-------------YKWGYIE 346 (1189)
T ss_pred EEEeccchh-------heEEEecCCceeeeeEEcCCceEEEEEe----cceEEEEeeccc-------------ceEEEee
Confidence 777765211 23333 466799999999999999887 789998887621 1222222
Q ss_pred CEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHH
Q 005140 568 RYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEE 621 (712)
Q Consensus 568 ~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~ 621 (712)
..++......-...-.|.+||...+.-+.....++.++++..+.-.|++...++
T Consensus 347 ~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~ 400 (1189)
T KOG2041|consen 347 ETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDG 400 (1189)
T ss_pred eEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccC
Confidence 233333322112245677788765443333334444444444433333333333
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=121.75 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-..+|||.|||. ...+++|+++|++||.|+. +.|+.|+.||++||||||+|.+.++|++|++.||+..+++.
T Consensus 192 ~~~~lfV~nLp~------~vtee~L~~~F~~fG~V~~--v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 192 KDTNLYVTNLPR------TITDDQLDTIFGKYGQIVQ--KNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ccceeEEeCCCC------cccHHHHHHHHHhcCCEEE--EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 356899999997 4458899999999999999 99999999999999999999999999999999999988654
Q ss_pred -eEEEEEeecc
Q 005140 138 -HIFAVNMFDD 147 (712)
Q Consensus 138 -~~l~v~~~~~ 147 (712)
+.+.|.....
T Consensus 264 ~~~l~V~~a~~ 274 (346)
T TIGR01659 264 SQPLTVRLAEE 274 (346)
T ss_pred ceeEEEEECCc
Confidence 5777776544
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=113.94 Aligned_cols=302 Identities=17% Similarity=0.221 Sum_probs=194.5
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCC--CCEEEEEcCCCCCCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPG--EKYLVTYSSHEPSNP 279 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spd--g~~l~t~s~d~~~~~ 279 (712)
...|..|.++|+.|.|...|+.|++++.+. |.+||+. ......+|. |. +|....|-|. .+.|++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d----- 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWV-SGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD----- 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhh-ccCcccccccccccchhhhhccCCCCCcCceecccc-----
Confidence 345688999999999999999999999998 8899999 888888884 33 4777777773 4678999999
Q ss_pred cCCCccEEEEEEcc-CCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 280 RDANRVVINIFDVR-TGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 280 ~~~~~~~I~iwd~~-~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
|++++=.+. +|... ..+..|.+.+. -++.-|.+-.-|.+++ |+.+.-+|+.......+
T Consensus 209 -----gqvr~s~i~~t~~~e~t~rl~~h~g~vh-------------klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 209 -----GQVRVSEILETGYVENTKRLAPHEGPVH-------------KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred -----CceeeeeeccccceecceecccccCccc-------------eeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 888876653 33322 23334444331 2455552224556666 99998888875543222
Q ss_pred c---ccccc---CeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 356 K---SLKVE---NVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 356 ~---~~~~~---~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
. ..+.. +...++..|... .+++ ++.+..++++...--..+.... .+ . .|.|.
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faV-----gG~dqf~RvYD~R~~~~e~~n~-~~---~----~f~p~-------- 329 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAV-----GGSDQFARVYDQRRIDKEENNG-VL---D----KFCPH-------- 329 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCcccccc-----CChhhhhhhhcccchhhccccc-hh---h----hcCCc--------
Confidence 1 11222 467788888765 6666 6677666654322111110000 00 0 00110
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc--e--
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR--V-- 504 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~--~-- 504 (712)
.+ +. ...-.|++++++.++.-|.++..|- .|++|.-.-+.+... .
T Consensus 330 --------------hl------------~~--d~~v~ITgl~Ysh~~sElLaSYnDe---~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 330 --------------HL------------VE--DDPVNITGLVYSHDGSELLASYNDE---DIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred --------------cc------------cc--cCcccceeEEecCCccceeeeeccc---ceEEeccccccCCCCCCCcc
Confidence 00 00 1144688999998887777777776 788885433322100 0
Q ss_pred --eEEEE-eCCC----ceeE-EEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEE
Q 005140 505 --SKLTT-LKGK----QANA-LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 505 --~~~~~-~~~~----~v~~-l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s 574 (712)
..++. +++| .|.. -.|-|...|+++|+. -|.|.||+-.+++++.. +...-|+|+.=+|---.||+++
T Consensus 379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD---CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD---CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred hhhccchhhcccccccccceeeeccCccceEEecCc---cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence 01112 3344 2333 347899999999997 89999999999988764 4445889999999888999999
Q ss_pred ccceeccccEEEEEecC
Q 005140 575 TSVHEMENGFNIWSFNG 591 (712)
Q Consensus 575 ~~~~~~d~~v~iw~~~g 591 (712)
. |..|+||...+
T Consensus 456 i-----d~DVKIWTP~~ 467 (559)
T KOG1334|consen 456 I-----DHDVKIWTPLT 467 (559)
T ss_pred C-----ccceeeecCCc
Confidence 9 99999998643
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-08 Score=104.30 Aligned_cols=314 Identities=17% Similarity=0.206 Sum_probs=161.2
Q ss_pred cCCCcEEEEEec----------CceEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 222 SPLGTYLATVHR----------QGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 222 Spdg~~lat~~~----------~~i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
||||++++.... ....|+|+. +........ ...+....|||+|++||..... .|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~-~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~-----------nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE-TGEITPLTPPPPKLQDAKWSPDGKYIAFVRDN-----------NLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETT-TTEEEESS-EETTBSEEEE-SSSTEEEEEETT-----------EEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecC-CCceEECcCCccccccceeecCCCeeEEEecC-----------ceEEE
Confidence 799999888542 225688998 544333222 3469999999999999998765 79999
Q ss_pred EccCCceeeeccCCCcccccCCCC-----CcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCe
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTG-----GVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
++.++...+........+..|... .+-+. ...+.||| |+++||... +..+..+.+.....-.. ..+.+
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~-~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~ 143 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR-RSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEV 143 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSS-SBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EE
T ss_pred ECCCCCeEEeccccceeEEcCccceecccccccc-ccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc---cCCcc
Confidence 987775443222221211111110 00000 12689999 999999887 55566555432111000 01112
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee--ee---eeeeecceeEEECcCCCEEEE-EEccccccccc
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR--QK---NLFSVSDCKMYWQSSGDYLAV-KVDRYTKTKKS 437 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~---~~~~~~~~~~~~s~~g~~l~~-~~~~~~~~~~~ 437 (712)
..+.+ |..|..+-.+.++++++.+.+... .. .....-...+.|.+++..|++ ..++....
T Consensus 144 ~~~~Y-----------Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~--- 209 (353)
T PF00930_consen 144 ESIRY-----------PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR--- 209 (353)
T ss_dssp EEEE-------------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE---
T ss_pred ccccc-----------CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCE---
Confidence 22222 111334455678888887765422 11 111223456789999995544 44433211
Q ss_pred ccccEEEEEEecCCcceeEEEe-cCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 438 TYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
..+.+++...........+. .+--.....+.|. +++..++..+...+...|.+++..++. ...+..+
T Consensus 210 --~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-------~~~lT~G~~ 280 (353)
T PF00930_consen 210 --LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-------PRQLTSGDW 280 (353)
T ss_dssp --EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-------EEESS-SSS
T ss_pred --EEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-------eeccccCce
Confidence 11233333322221111111 1111222355655 777777776664334467777764432 3344433
Q ss_pred ce-eEEEEccCCCeEEEEeccC--CCceEEEEECC-cceeeeeccccce-eeEEECCCCCEEEEEEc
Q 005140 514 QA-NALFWSPSGRFIVLAGLKG--FNGQLEFYNVD-ELETMATAEHFMA-TDVEWDPTGRYVATAVT 575 (712)
Q Consensus 514 ~v-~~l~~spdg~~l~~~~~~~--~dg~v~iwd~~-~~~~~~~~~~~~v-~~~~~spdg~~l~t~s~ 575 (712)
.| ..+.|+++++.|+..+... ....|+..++. ++........... ..+.|||+|++++....
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 45 4588999988877655432 24567777777 5555443333333 58999999998876654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-11 Score=111.69 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=70.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.-.|+|+-|.. +...+.||+.|.+||+|.+ +.+.+|..|+++|||+||.|.++++|++||..|||.-|++|
T Consensus 62 hfhvfvgdls~------eI~~e~lr~aF~pFGevS~--akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R- 132 (321)
T KOG0148|consen 62 HFHVFVGDLSP------EIDNEKLREAFAPFGEVSD--AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR- 132 (321)
T ss_pred ceeEEehhcch------hcchHHHHHHhcccccccc--ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc-
Confidence 45789999986 4447779999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++.|...
T Consensus 133 ~IRTNWAT 140 (321)
T KOG0148|consen 133 TIRTNWAT 140 (321)
T ss_pred eeeccccc
Confidence 77776643
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-12 Score=118.60 Aligned_cols=84 Identities=31% Similarity=0.473 Sum_probs=76.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+-|.|||+.+.. +.-|..||..|.+||.|++ |.|.+|+.|+++||||||+|+-+|.|..|.+.|||..++|+
T Consensus 112 iMcRvYVGSIsf------El~EDtiR~AF~PFGPIKS--InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR 183 (544)
T KOG0124|consen 112 IMCRVYVGSISF------ELREDTIRRAFDPFGPIKS--INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 183 (544)
T ss_pred HhHheeeeeeEE------EechHHHHhhccCCCCcce--eecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence 459999999997 6669999999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEeeccccc
Q 005140 138 HIFAVNMFDDFDK 150 (712)
Q Consensus 138 ~~l~v~~~~~~~~ 150 (712)
-++|.+..+..+
T Consensus 184 -NiKVgrPsNmpQ 195 (544)
T KOG0124|consen 184 -NIKVGRPSNMPQ 195 (544)
T ss_pred -cccccCCCCCcc
Confidence 888887665443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.5e-08 Score=110.19 Aligned_cols=300 Identities=17% Similarity=0.260 Sum_probs=167.0
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecc--------------cC--------cceeeeec-----------------
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGA--------------NT--------FNRLMRYA----------------- 252 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~--------------~~--------~~~~~~~~----------------- 252 (712)
...|.+++||||+..||.....+ +.+.... +. ++.-.+|+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 45789999999999999998876 4433211 00 00111110
Q ss_pred ---------CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCe
Q 005140 253 ---------HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPV 323 (712)
Q Consensus 253 ---------~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (712)
..+-..|+|-.||+|+|+.+.++.. +....|+||+ +.|.+..+-.. +.|+.- +
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~----~~~R~iRVy~-ReG~L~stSE~------------v~gLe~-~ 261 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET----GSRRVIRVYS-REGELQSTSEP------------VDGLEG-A 261 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCC----CceeEEEEEC-CCceEEecccc------------CCCccC-C
Confidence 1124578899999999988874211 1237899999 56764433321 222222 5
Q ss_pred EEecCCCCCEEEEec----CCeEEEEEcCCceeccccccc----ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 324 FRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 324 ~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
++|.| .|++||+.. ...|.+|+-+..+ -....+. ...|..+.|++++..||++.. +. |.+|.
T Consensus 262 l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-----~~---vqLWt 331 (928)
T PF04762_consen 262 LSWRP-SGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-----DR---VQLWT 331 (928)
T ss_pred ccCCC-CCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCCceeeEEEECCCCCEEEEEec-----CC---ceEEE
Confidence 89999 999999887 3556677654221 1112222 235899999999999999642 22 55666
Q ss_pred cCCccceeeeeee-e-e-cceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 396 IPSKEELRQKNLF-S-V-SDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 396 ~~~~~~~~~~~~~-~-~-~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
....+......+. . . ....+.|+|... .|.+.+..+. +..+++. ..++.
T Consensus 332 ~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~---------~~~~~~~------------------~~v~~ 384 (928)
T PF04762_consen 332 RSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ---------YEIYDFA------------------WDVSR 384 (928)
T ss_pred eeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc---------EEEEEEE------------------EEEEe
Confidence 5554432222221 1 1 122378998654 3444444322 2222211 01111
Q ss_pred e----eCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 472 E----PKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 s----p~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+ |+. ...++. ||. ++.+-.++........ ....+. ..++++++|++++..+++... +|.|.+|...
T Consensus 385 s~~~~~~D~g~vaVI--DG~--~lllTpf~~a~VPPPM-s~~~l~~~~~v~~vaf~~~~~~~avl~~---d~~l~~~~~~ 456 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVI--DGN--KLLLTPFRRAVVPPPM-SSYELELPSPVNDVAFSPSNSRFAVLTS---DGSLSIYEWD 456 (928)
T ss_pred cCCCCccCceEEEEE--eCC--eEEEecccccCCCchH-hceEEcCCCCcEEEEEeCCCCeEEEEEC---CCCEEEEEec
Confidence 1 211 123333 332 5777666543322111 112222 457999999999987777766 9999999854
Q ss_pred cceee--------ee------------ccccceeeEEECCCCCEEEEEEc
Q 005140 546 ELETM--------AT------------AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 546 ~~~~~--------~~------------~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
..... .. .....+..++|..+...++....
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (928)
T PF04762_consen 457 LKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS 506 (928)
T ss_pred CCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence 21110 00 12244667888777766555544
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-11 Score=128.15 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=71.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.+ +.|+.|+.+|++||||||+|.+.++|.+|++.|||+.++|+
T Consensus 204 ~~rLfVgnLp~------~vteedLk~lFs~FG~I~s--vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr- 274 (612)
T TIGR01645 204 FNRIYVASVHP------DLSETDIKSVFEAFGEIVK--CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ- 274 (612)
T ss_pred cceEEeecCCC------CCCHHHHHHHHhhcCCeeE--EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe-
Confidence 46899999997 4558999999999999999 99999999999999999999999999999999999999986
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.++|.+
T Consensus 275 ~LrV~k 280 (612)
T TIGR01645 275 YLRVGK 280 (612)
T ss_pred EEEEEe
Confidence 888875
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-11 Score=113.93 Aligned_cols=78 Identities=18% Similarity=0.343 Sum_probs=70.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.+.|+|.|||+ ..-+-+|+.+|.+||+|.+ |.|..++ .-+||||||+|++.+||++|-.+|||..+.||
T Consensus 95 ~pkRLhVSNIPF------rFRdpDL~aMF~kfG~Vld--VEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPF------RFRDPDLRAMFEKFGKVLD--VEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCceeEeecCCc------cccCccHHHHHHhhCceee--EEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 457999999997 5558899999999999999 9999986 56999999999999999999999999999996
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|+...
T Consensus 165 -kIEVn~AT 172 (376)
T KOG0125|consen 165 -KIEVNNAT 172 (376)
T ss_pred -EEEEeccc
Confidence 88888754
|
|
| >PLN03120 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=110.77 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=67.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+.+|+++|++||+|.+ |.|+.|+. ++|||||+|.++++|..|+. |||..|.++
T Consensus 4 ~rtVfVgNLs~------~tTE~dLrefFS~~G~I~~--V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr- 70 (260)
T PLN03120 4 VRTVKVSNVSL------KATERDIKEFFSFSGDIEY--VEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQ- 70 (260)
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc-
Confidence 46999999997 4559999999999999999 99999873 57999999999999999995 999999886
Q ss_pred EEEEEeeccc
Q 005140 139 IFAVNMFDDF 148 (712)
Q Consensus 139 ~l~v~~~~~~ 148 (712)
.+.|....+.
T Consensus 71 ~V~Vt~a~~~ 80 (260)
T PLN03120 71 SVTITPAEDY 80 (260)
T ss_pred eEEEEeccCC
Confidence 8888875543
|
|
| >KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-11 Score=90.47 Aligned_cols=86 Identities=19% Similarity=0.384 Sum_probs=70.8
Q ss_pred ccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 53 EVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 53 ~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.++.-..+.+||.|||. ..+.+.+.++|++||.|.. |.+-.++ .++|-|||.|++..+|++|++.|+|+
T Consensus 12 rlppevnriLyirNLp~------~ITseemydlFGkyg~IrQ--IRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPF------KITSEEMYDLFGKYGTIRQ--IRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred CCChhhheeEEEecCCc------cccHHHHHHHhhcccceEE--EEecCcc---CcCceEEEEehHhhhHHHHHHHhccc
Confidence 33344567999999997 5557889999999999999 8887754 68899999999999999999999999
Q ss_pred ccCCceEEEEEeeccccc
Q 005140 133 KLDRAHIFAVNMFDDFDK 150 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~~~ 150 (712)
.++++ -+.|--+...+.
T Consensus 81 n~~~r-yl~vlyyq~~~~ 97 (124)
T KOG0114|consen 81 NVDNR-YLVVLYYQPEDA 97 (124)
T ss_pred ccCCc-eEEEEecCHHHH
Confidence 99985 666666555443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-07 Score=108.94 Aligned_cols=330 Identities=15% Similarity=0.216 Sum_probs=184.7
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEe----ecccCcceeee-ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVW----GGANTFNRLMR-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw----~~~~~~~~~~~-~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
...|.++.|-++..-|+.+..+| |.+. +.. ....-.. .-..+|.+++||||+..|+....+ ++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~----------~~ 143 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD-EDEIEIVGSVDSGILAASWSPDEELLALVTGE----------GN 143 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-CceeEEEEEEcCcEEEEEECCCcCEEEEEeCC----------CE
Confidence 45788899999998888888888 7666 444 2222221 224579999999999999999888 78
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe-EE-EEEcCCceec--ccccccccC
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM-IS-VYETESFTLI--DKKSLKVEN 362 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~-i~-iwd~~~~~~~--~~~~~~~~~ 362 (712)
|.+.+ ++-..+.....+..... ....+ .+-|-. ....|=....+. -+ +=+ ++...+ .... ...+
T Consensus 144 l~~mt-~~fd~i~E~~l~~~~~~--~~~~V------sVGWGk-KeTQF~Gs~gK~aa~~~~~-p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 144 LLLMT-RDFDPISEVPLDSDDFG--ESKHV------SVGWGK-KETQFHGSAGKAAARQLRD-PTVPKVDEGKLS-WDDG 211 (928)
T ss_pred EEEEe-ccceEEEEeecCccccC--CCcee------eeccCc-ccCccCcchhhhhhhhccC-CCCCccccCccc-cCCC
Confidence 87776 56777766655543320 00000 234433 222221110000 00 000 000000 0111 2234
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCC-CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQ-PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
-..++|-.||.++|+...+. ..+ .-.+.+|+-. +...........-.-.++|.|+|..||+......+ ..
T Consensus 212 ~~~ISWRGDG~yFAVss~~~--~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~------~~ 282 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEP--ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR------HD 282 (928)
T ss_pred ceEEEECCCCcEEEEEEEEc--CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC------cE
Confidence 67899999999999865432 233 3445555543 11111101111122357899999999987652221 11
Q ss_pred EEEEEEecCCcceeEEEec--CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC-CceeEE
Q 005140 442 FELFRIKERDIPIEVLELD--NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANAL 518 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l 518 (712)
+.+|. .+|..-..+.++ .....|..++|++|+..||+...+ .|.+|...+-... .+....+.. ..+..+
T Consensus 283 VvFfE--rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~~NYHWY--LKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 283 VVFFE--RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED----RVQLWTRSNYHWY--LKQEIRFSSSESVNFV 354 (928)
T ss_pred EEEEe--cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC----CceEEEeeCCEEE--EEEEEEccCCCCCCce
Confidence 33333 233333334443 345689999999999999998765 4999998542211 122222222 234569
Q ss_pred EEccCC-CeEEEEeccCCCceEEEEECC----c----------------ce-eeee----------------ccccceee
Q 005140 519 FWSPSG-RFIVLAGLKGFNGQLEFYNVD----E----------------LE-TMAT----------------AEHFMATD 560 (712)
Q Consensus 519 ~~spdg-~~l~~~~~~~~dg~v~iwd~~----~----------------~~-~~~~----------------~~~~~v~~ 560 (712)
.|+|.. ..|.+.+. +|.+..+++. . |. ++-+ .-...|.+
T Consensus 355 ~Wdpe~p~~L~v~t~---~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTS---NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred EECCCCCCEEEEEec---CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 999953 34544443 3555443321 0 11 1111 11256889
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++|++++..+++... |+.+.+|...
T Consensus 432 vaf~~~~~~~avl~~-----d~~l~~~~~~ 456 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTS-----DGSLSIYEWD 456 (928)
T ss_pred EEEeCCCCeEEEEEC-----CCCEEEEEec
Confidence 999999988888888 8999999854
|
|
| >PLN03213 repressor of silencing 3; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-11 Score=116.06 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP--QEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~--~~a~~a~~~~~~~~~~ 135 (712)
-...||||||+. +..+.+|+.+|+.||.|.. +.|| ++|| ||||||+|... .++.+||..|||..+.
T Consensus 9 ~gMRIYVGNLSy------dVTEDDLravFSeFGsVkd--VEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 9 GGVRLHVGGLGE------SVGRDDLLKIFSPMGTVDA--VEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred cceEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 346999999998 6669999999999999999 9999 5578 99999999987 7899999999999999
Q ss_pred CceEEEEEeecc
Q 005140 136 RAHIFAVNMFDD 147 (712)
Q Consensus 136 ~~~~l~v~~~~~ 147 (712)
|+ .|+|+....
T Consensus 77 GR-~LKVNKAKP 87 (759)
T PLN03213 77 GG-RLRLEKAKE 87 (759)
T ss_pred Cc-eeEEeeccH
Confidence 96 899987653
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-11 Score=114.49 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=80.1
Q ss_pred CCCCCCCCCCCcccccccCcccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEE
Q 005140 33 PGEDLGIISDDEDVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYC 112 (712)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~ 112 (712)
+..+.++.+-.|... ...+...++-.-++||+-+|+ ...|.+||++|++||.|.+ |.|++|+.||.+||+|
T Consensus 9 ~~~~~~gs~~~~~~~-~~~~d~~d~~~vKlfVgqIpr------t~sE~dlr~lFe~yg~V~e--inl~kDk~t~~s~gcC 79 (510)
T KOG0144|consen 9 PPSPCGGSSLADNGS-LDHTDNPDGSAVKLFVGQIPR------TASEKDLRELFEKYGNVYE--INLIKDKSTGQSKGCC 79 (510)
T ss_pred CCCCCCCcchhhcCC-CCCCCCCCchhhhheeccCCc------cccHHHHHHHHHHhCceeE--EEeecccccCcccceE
Confidence 334444444443333 333344445567999999998 5559999999999999999 9999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCC-ccCCceEEEEEeecccc
Q 005140 113 FIEYNTPQEAELAKEKTNGY-KLDRAHIFAVNMFDDFD 149 (712)
Q Consensus 113 fv~~~~~~~a~~a~~~~~~~-~~~~~~~l~v~~~~~~~ 149 (712)
||.|.++++|.+|+..|++. .|.|-|...--++.|-+
T Consensus 80 Fv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 80 FVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGE 117 (510)
T ss_pred EEEeccHHHHHHHHHHhhcccccCCCCcceeecccchh
Confidence 99999999999999999885 45554433333344433
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-09 Score=98.44 Aligned_cols=324 Identities=15% Similarity=0.221 Sum_probs=183.0
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcc----eeeeec-C-------------CCeeEEEecCCCC--EEEEEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN----RLMRYA-H-------------PQVKLIDFSPGEK--YLVTYS 272 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~----~~~~~~-~-------------~~v~~i~~Spdg~--~l~t~s 272 (712)
..+++|.|...|.+||||..+| |.++.-..... ....++ | ..|..+.|.+++. .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5678999999999999999999 77875442222 122221 1 1378899998874 333444
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceee--------------------eccCCCcccccCCC----CCcCCCCcCeEEecC
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMR--------------------DFKGSADEFAVGGT----GGVAGVSWPVFRWGG 328 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~--------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~ 328 (712)
.| .+|++|.+....... .+..+...+. ..+ .........++.++.
T Consensus 106 Nd----------ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-a~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 106 ND----------KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-ASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CC----------cceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-eeeeeeccccceeEeeeeeecC
Confidence 55 689999874332111 1111111000 000 011111223678888
Q ss_pred CCCCEEEEecCCeEEEEEcC----Cceeccccccccc----CeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 329 GKDKYFAKLGKNMISVYETE----SFTLIDKKSLKVE----NVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 329 ~dg~~la~~~d~~i~iwd~~----~~~~~~~~~~~~~----~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
|...+.++.|=.|.+|++. ++..++.+...+. -|++..|+|.. +.+++ .+..+.+++..+.....
T Consensus 175 -D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y-----SSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 175 -DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY-----SSSKGTIRLCDMRQSAL 248 (433)
T ss_pred -ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE-----ecCCCcEEEeechhhhh
Confidence 9999999999999999986 3444444433333 37888999985 45555 55666666655542111
Q ss_pred -----c------ceeeeeeee---ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC---
Q 005140 400 -----E------ELRQKNLFS---VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--- 462 (712)
Q Consensus 400 -----~------~~~~~~~~~---~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--- 462 (712)
+ ....+.++. .++..+.|+++|+|+++.. |-.+.+|++.....|+....+...
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD----------yltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD----------YLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec----------cceeEEEeccccCCcceEEeehHhHHH
Confidence 0 011122222 2334567899999998743 334799999887788776665211
Q ss_pred -------CCce---EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc-eeEEEEccCCCeEEEEe
Q 005140 463 -------NDKI---IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-ANALFWSPSGRFIVLAG 531 (712)
Q Consensus 463 -------~~~v---~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~~~~ 531 (712)
++.| ..++|+-++.++.+|+... .+++|++..+.. .-.+++... .....--..-+.+.+++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n---~frvf~~~~gsk-----~d~tl~asr~~~~~~~~~k~~~V~~~g 390 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN---VFRVFNLARGSK-----EDFTLEASRKNMKPRKVLKLRLVSSSG 390 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccc---eEEEecCCCCcc-----eeecccccccCCcccccccceeeecCC
Confidence 1222 2478998999999999877 899999755442 112222110 00000001122333333
Q ss_pred ccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 532 LKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
. .....++- -...-...+...+|+|....||.+.. +.++||
T Consensus 391 ~---r~~~~~~v------d~ldf~kkilh~aWhp~en~ia~aat------nnlyif 431 (433)
T KOG1354|consen 391 K---RKRDEISV------DALDFRKKILHTAWHPKENSIAVAAT------NNLYIF 431 (433)
T ss_pred C---cccccccc------chhhhhhHHHhhccCCccceeeeeec------CceEEe
Confidence 3 22211110 00011134556799999999999887 566665
|
|
| >smart00361 RRM_1 RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.9e-11 Score=89.05 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=51.0
Q ss_pred HHHHHHhh----ccCeeeeceEE-EeccCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEE
Q 005140 80 GVIRKIYS----QIGVIKEDGLW-MPVDPET--QKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 142 (712)
Q Consensus 80 ~~l~~~f~----~~g~v~~~~~~-~~~d~~~--~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v 142 (712)
.+|++.|+ +||.|.+ +. +++|+.+ |+++|||||+|.+.++|.+|++.|||..++++ .+.+
T Consensus 3 ~~l~~~~~~~~~~fG~v~~--v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr-~l~~ 69 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGK--INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR-TVKA 69 (70)
T ss_pred hhHHHHHHHHHHhcCCeeE--EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-EEEe
Confidence 45666666 9999999 85 7777766 99999999999999999999999999999986 5544
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-11 Score=125.40 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++.|||+|||. +..+++|+++|++||.|.+ +.|++| .+|++||||||+|.+.++|++|++.||++.+...
T Consensus 57 ~~~~lFVgnLp~------~~tEd~L~~~F~~~G~I~~--vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 57 RGCEVFVGKIPR------DLYEDELVPLFEKAGPIYE--LRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCEEEeCCCCC------CCCHHHHHHHHHhhCCEEE--EEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 468999999997 5669999999999999999 999999 5999999999999999999999999999988644
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
+.+.|+.
T Consensus 128 r~l~V~~ 134 (578)
T TIGR01648 128 RLLGVCI 134 (578)
T ss_pred ccccccc
Confidence 4555543
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=94.51 Aligned_cols=77 Identities=31% Similarity=0.408 Sum_probs=69.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+-+|||.|+-. +..|+++...|.-||+|+. |++-+|+.||-.||||.|+|++.++|+.|+..+||..|-+.
T Consensus 71 EGwIi~VtgvHe------EatEedi~d~F~dyGeiKN--ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 71 EGWIIFVTGVHE------EATEEDIHDKFADYGEIKN--IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred eeEEEEEeccCc------chhHHHHHHHHhhcccccc--eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 356899999987 7779999999999999999 99999999999999999999999999999999999988775
Q ss_pred eEEEEE
Q 005140 138 HIFAVN 143 (712)
Q Consensus 138 ~~l~v~ 143 (712)
.+.|-
T Consensus 143 -~v~VD 147 (170)
T KOG0130|consen 143 -NVSVD 147 (170)
T ss_pred -ceeEE
Confidence 44443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-07 Score=96.87 Aligned_cols=308 Identities=14% Similarity=0.175 Sum_probs=155.2
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 341 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~ 341 (712)
|||+++++........ -+....+.+.|||+.+++............ ...||| +|+++|...++.
T Consensus 1 S~d~~~~l~~~~~~~~-~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~--------------~~~~sP-~g~~~~~v~~~n 64 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQ-WRHSFKGDYYIYDIETGEITPLTPPPPKLQ--------------DAKWSP-DGKYIAFVRDNN 64 (353)
T ss_dssp -TTSSEEEEEEEEEEE-SSSEEEEEEEEEETTTTEEEESS-EETTBS--------------EEEE-S-SSTEEEEEETTE
T ss_pred CCCCCeEEEEECcEEe-eeeccceeEEEEecCCCceEECcCCccccc--------------cceeec-CCCeeEEEecCc
Confidence 7999998875432110 011122678999998876555444322222 589999 999999999999
Q ss_pred EEEEEcCCceeccccccc-----------------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEE-EEEecCCccc-e
Q 005140 342 ISVYETESFTLIDKKSLK-----------------VENVMDFSWSPTDPIISLFVPELGGGNQPARV-SLVQIPSKEE-L 402 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i-~~~~~~~~~~-~ 402 (712)
|.+++..++....-..-- ...-..+-||||+++||++.-.. ..++. .+........ .
T Consensus 65 ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~----~~v~~~~~~~~~~~~~~y 140 (353)
T PF00930_consen 65 LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE----REVPEYPLPDYSPPDSQY 140 (353)
T ss_dssp EEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-----TTS-EEEEEEESSSTESS
T ss_pred eEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC----cCCceEEeeccCCccccC
Confidence 999998766433211000 12235688999999999864332 22221 2211111100 0
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec----CCCCceEEEEEeeCCCEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD----NKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~----~h~~~v~~~~~sp~g~~l 478 (712)
. ....+.+-.-|.-. ..+.++.+...+.....+..+ .....+..+.|+++++.|
T Consensus 141 p-------~~~~~~YPk~G~~n---------------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 141 P-------EVESIRYPKAGDPN---------------PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp --------EEEEEE--BTTS------------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred C-------cccccccCCCCCcC---------------CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 0 00001111111110 112333333222222222222 335568899999999956
Q ss_pred EEEEcCCCCC--eEEEEEeecccccCceeEEEE-eCCCce---eEEEEc-cCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 479 AVIHGDSPRP--DISFYSMRTAQHAGRVSKLTT-LKGKQA---NALFWS-PSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 479 ~~~~~d~~~~--~v~i~d~~~~~~~~~~~~~~~-~~~~~v---~~l~~s-pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
++...+...+ .+.++|..++.. ..+.. .....+ ..+.|. +++..++..+..+.-..|++++..++....
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~ 274 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGET----RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ 274 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTC----EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred EEEEcccCCCEEEEEEEECCCCce----eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence 5554433222 445556544332 23322 223322 356665 777766666553324567777777665333
Q ss_pred -ecccccee-eEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeecc-cce-eeeEEecCCCCCC
Q 005140 552 -TAEHFMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLK-DHF-FQFLWRPRPPSFL 615 (712)
Q Consensus 552 -~~~~~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~-~~i-~~~~w~p~~~~l~ 615 (712)
+.....|+ -+.|+++++.|...+.........++.-++. +..+..... ... ..+.+||++++++
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 23345564 4789999998776665311112244444555 444444322 222 5899999998765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-09 Score=107.79 Aligned_cols=139 Identities=14% Similarity=0.184 Sum_probs=101.6
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCC--CeeEEEecCCC------------CEEEEEcCCCCCCCcC
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--QVKLIDFSPGE------------KYLVTYSSHEPSNPRD 281 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg------------~~l~t~s~d~~~~~~~ 281 (712)
-.++.|||.| +||+|+..-|.|.|.. +.+.+..+.+. .|+.+.|+|-. -.||++...
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~------- 88 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS------- 88 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehh-hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc-------
Confidence 4578999988 8999999999999998 88888877543 49999998632 134444444
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|.+||...+..+..+..+...+ ..+.| +-|-+ +. .+|+... ...|.+|+..+|..+.++...
T Consensus 89 ---GrIil~d~~~~s~~~~l~~~~~~~--------qdl~W--~~~rd-~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 89 ---GRIILVDFVLASVINWLSHSNDSV--------QDLCW--VPARD-DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ---CcEEEEEehhhhhhhhhcCCCcch--------hheee--eeccC-cchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 899999999998888888776664 22333 22333 44 3455444 899999999999999888777
Q ss_pred ccCeeeEEECCC-CCeEEE
Q 005140 360 VENVMDFSWSPT-DPIISL 377 (712)
Q Consensus 360 ~~~v~~~~~sp~-~~~la~ 377 (712)
.....|+.+.|- .+++.+
T Consensus 155 ~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred CcceeeeeeCCCCcceEEE
Confidence 666788888885 334443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-08 Score=97.29 Aligned_cols=277 Identities=16% Similarity=0.243 Sum_probs=162.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-c----eeeeccCCCcccc----cCCCCCcCCCCcCeEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-K----VMRDFKGSADEFA----VGGTGGVAGVSWPVFR 325 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 325 (712)
-+.++.|..+|.+||||..+ |.|.+|.-... + ....++.|..... ......+. .++
T Consensus 27 iis~vef~~~Ge~LatGdkg----------GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKin-----kIr 91 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKG----------GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKIN-----KIR 91 (433)
T ss_pred ceeeEEeecccceEeecCCC----------CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhh-----hce
Confidence 38999999999999999999 99999863221 1 2344544543321 01111222 467
Q ss_pred ecCCCCC---EEEEecCCeEEEEEcCCceecc-ccc----ccccCeeeEE---ECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 326 WGGGKDK---YFAKLGKNMISVYETESFTLID-KKS----LKVENVMDFS---WSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 326 ~s~~dg~---~la~~~d~~i~iwd~~~~~~~~-~~~----~~~~~v~~~~---~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
|.+ ++. +|.++.|.+|++|.+....... ... .....+..+. ..|....+.+ .|. ++
T Consensus 92 w~~-~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea-~pr--------Rv--- 158 (433)
T KOG1354|consen 92 WLD-DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA-SPR--------RV--- 158 (433)
T ss_pred ecC-CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee-eee--------ee---
Confidence 877 554 5666669999999886332111 000 1111122221 1222222211 000 00
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-----CceEEE
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-----DKIIAF 469 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-----~~v~~~ 469 (712)
-.+.+....-++..+.|+..++++.+- . +.||.+.........+.+.+++ .-|++.
T Consensus 159 ---------~aNaHtyhiNSIS~NsD~Et~lSADdL-R---------INLWnlei~d~sFnIVDIKP~nmEeLteVITsa 219 (433)
T KOG1354|consen 159 ---------YANAHTYHINSISVNSDKETFLSADDL-R---------INLWNLEIIDQSFNIVDIKPANMEELTEVITSA 219 (433)
T ss_pred ---------ccccceeEeeeeeecCccceEeeccce-e---------eeeccccccCCceeEEEccccCHHHHHHHHhhh
Confidence 011122223344567777766654332 1 5788887666555555554443 458889
Q ss_pred EEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC------------CceeEEEEccCCCeEEEEeccCCC
Q 005140 470 AWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG------------KQANALFWSPSGRFIVLAGLKGFN 536 (712)
Q Consensus 470 ~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------------~~v~~l~~spdg~~l~~~~~~~~d 536 (712)
.|+| ..+.|+..+..| +|++.|++....-..-..+...+. ..|..+.||++|+|+++-.+
T Consensus 220 EFhp~~cn~f~YSSSKG---tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---- 292 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKG---TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---- 292 (433)
T ss_pred ccCHhHccEEEEecCCC---cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc----
Confidence 9999 567888888888 999999974321000001111111 13678999999999999874
Q ss_pred ceEEEEECC-cceeeee--------------ccccce---eeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 537 GQLEFYNVD-ELETMAT--------------AEHFMA---TDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 537 g~v~iwd~~-~~~~~~~--------------~~~~~v---~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
-+|++||+. ..+.+.+ .....| ..++||.++.+++||+. .+.+++++..
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy-----~n~frvf~~~ 359 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY-----NNVFRVFNLA 359 (433)
T ss_pred ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc-----cceEEEecCC
Confidence 789999995 2222221 111222 36899999999999999 8999999854
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-08 Score=87.95 Aligned_cols=285 Identities=13% Similarity=0.151 Sum_probs=164.9
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc---------Ccceeee-ecCCC-eeEEEecCCCCEEEEEcCCCCC
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN---------TFNRLMR-YAHPQ-VKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~---------~~~~~~~-~~~~~-v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
++...+|..-+|||.++||+.|...| |.+..+.. ....+.. -.|.+ |..++|. ..+|++++ |
T Consensus 7 ~r~~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-d--- 80 (325)
T KOG0649|consen 7 KRAYNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-D--- 80 (325)
T ss_pred HHHHHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-C---
Confidence 44456778889999999999999999 77876541 1112222 23554 9999998 45677665 4
Q ss_pred CCcCCCccEEEEEEccCCc------eeeec--cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC
Q 005140 278 NPRDANRVVINIFDVRTGK------VMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES 349 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~ 349 (712)
|.|+=|.-.... .+... +.+.+.+ .+.. .+++...|..+..|..++|+.+.-||+++
T Consensus 81 -------G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~------evPe--INam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 81 -------GLVYGWEWNEEEESLATKRLWEVKIPMQVDAV------EVPE--INAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred -------ceEEEeeehhhhhhccchhhhhhcCccccCcc------cCCc--cceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 578877643221 11111 1121111 1111 12566677234455555699999999999
Q ss_pred ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 350 FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
|+.......|.+.|.++.--.....|.+ |+.|++++||... +.+.+....
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qils-----G~EDGtvRvWd~k--t~k~v~~ie----------------------- 195 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILS-----GAEDGTVRVWDTK--TQKHVSMIE----------------------- 195 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceee-----cCCCccEEEEecc--ccceeEEec-----------------------
Confidence 9998888899999999988444455555 8888888876543 322222111
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT 508 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~ 508 (712)
.|+-. -.+..| ...|.+++- +..+++++++. .+.+|.+++... ..+.
T Consensus 196 --------------~yk~~--------~~lRp~~g~wigala~--~edWlvCGgGp----~lslwhLrsse~----t~vf 243 (325)
T KOG0649|consen 196 --------------PYKNP--------NLLRPDWGKWIGALAV--NEDWLVCGGGP----KLSLWHLRSSES----TCVF 243 (325)
T ss_pred --------------cccCh--------hhcCcccCceeEEEec--cCceEEecCCC----ceeEEeccCCCc----eEEE
Confidence 11100 001112 233555544 56677776653 699999987552 2444
Q ss_pred EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-eccccceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 509 TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 509 ~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
.++ .++..+.|-. +.+++++. ...|.-|.+..--... ...+..+++..|+..--.+++.... .+.+.|+
T Consensus 244 pip-a~v~~v~F~~--d~vl~~G~---g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~----s~~~~i~ 313 (325)
T KOG0649|consen 244 PIP-ARVHLVDFVD--DCVLIGGE---GNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGF----SNKLHIL 313 (325)
T ss_pred ecc-cceeEeeeec--ceEEEecc---ccceeeeeeccEEEEeccCCccceeeecccCCceEEEEeccc----ceeeeee
Confidence 443 3456666643 46667765 5678888877322221 2344556666666554444443331 4555554
|
|
| >PLN03121 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-10 Score=102.80 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=66.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+.+|+|+||+. ...+++|+++|++||+|.. |.|+.|. .++|||||+|.++++|..|+ .|||..|.++
T Consensus 5 g~TV~V~NLS~------~tTE~dLrefFS~~G~I~~--V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~- 71 (243)
T PLN03121 5 GYTAEVTNLSP------KATEKDVYDFFSHCGAIEH--VEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQ- 71 (243)
T ss_pred ceEEEEecCCC------CCCHHHHHHHHHhcCCeEE--EEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCc-
Confidence 46999999997 4459999999999999999 9999985 55689999999999999998 5999999885
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.+..+.+
T Consensus 72 ~I~It~~~~ 80 (243)
T PLN03121 72 RVCITRWGQ 80 (243)
T ss_pred eEEEEeCcc
Confidence 677777665
|
|
| >KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-10 Score=99.49 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhcc-CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI-GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~-g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..-.+||+.+|. -..+..+...|.+| |.|+. +.+.+++.||++||||||+|++++.|+-|.+.||+|-|.+
T Consensus 48 ~~g~~~~~~~p~------g~~e~~~~~~~~q~~g~v~r--~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 48 IEGVVYVDHIPH------GFFETEILNYFRQFGGTVTR--FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred Cccceeeccccc------chhHHHHhhhhhhcCCeeEE--EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 345899999997 55588899999998 78899 9999999999999999999999999999999999999987
Q ss_pred ceEEEEEeeccc
Q 005140 137 AHIFAVNMFDDF 148 (712)
Q Consensus 137 ~~~l~v~~~~~~ 148 (712)
|.|.|..+..-
T Consensus 120 -~lL~c~vmppe 130 (214)
T KOG4208|consen 120 -HLLECHVMPPE 130 (214)
T ss_pred -heeeeEEeCch
Confidence 58888876554
|
|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-10 Score=102.80 Aligned_cols=78 Identities=29% Similarity=0.491 Sum_probs=71.8
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
+.++|.=||. ..+++.||.+|+..|+|.+ |.+.+|+.||.+.||+||.|.+++||++|+..|||..|..+ +
T Consensus 42 TNLIvNYLPQ------~MTqdE~rSLF~SiGeiES--cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K-T 112 (360)
T KOG0145|consen 42 TNLIVNYLPQ------NMTQDELRSLFGSIGEIES--CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK-T 112 (360)
T ss_pred ceeeeeeccc------ccCHHHHHHHhhcccceee--eeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc-e
Confidence 5899999997 5558999999999999999 99999999999999999999999999999999999999875 8
Q ss_pred EEEEeec
Q 005140 140 FAVNMFD 146 (712)
Q Consensus 140 l~v~~~~ 146 (712)
++|+...
T Consensus 113 IKVSyAR 119 (360)
T KOG0145|consen 113 IKVSYAR 119 (360)
T ss_pred EEEEecc
Confidence 8887643
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-10 Score=97.07 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=67.9
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
...++.|||+|||- +.-+++|.++|.|||.|.+ |.|..-+ ..-+||||+|+++.+|+.||..-||+.++
T Consensus 3 gr~~~~iyvGNLP~------diRekeieDlFyKyg~i~~--ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPG------DIREKEIEDLFYKYGRIRE--IELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred CcccceEEecCCCc------chhhccHHHHHhhhcceEE--EEeccCC---CCCCeeEEEecCccchhhhhhcccccccC
Confidence 34688999999997 6669999999999999999 8776543 35679999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
+. .|.|....
T Consensus 72 g~-rLRVEfpr 81 (241)
T KOG0105|consen 72 GC-RLRVEFPR 81 (241)
T ss_pred cc-eEEEEecc
Confidence 94 88887643
|
|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-10 Score=101.84 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=66.7
Q ss_pred cccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 54 VESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 54 ~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
..+.-.|.|||+|++. -..+..||+.|++||+|.+ |.+-+|+ ||+||.|++.|.|.+||..+||..
T Consensus 159 Qssp~NtsVY~G~I~~------~lte~~mr~~Fs~fG~I~E--VRvFk~q------GYaFVrF~tkEaAahAIv~mNnte 224 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIAS------GLTEDLMRQTFSPFGPIQE--VRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTE 224 (321)
T ss_pred cCCCCCceEEeCCcCc------cccHHHHHHhcccCCcceE--EEEeccc------ceEEEEecchhhHHHHHHHhcCce
Confidence 3355679999999997 2338899999999999999 9998775 899999999999999999999999
Q ss_pred cCCceEEEEEee
Q 005140 134 LDRAHIFAVNMF 145 (712)
Q Consensus 134 ~~~~~~l~v~~~ 145 (712)
+.+ |..+++.=
T Consensus 225 i~G-~~VkCsWG 235 (321)
T KOG0148|consen 225 IGG-QLVRCSWG 235 (321)
T ss_pred eCc-eEEEEecc
Confidence 998 57777663
|
|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-10 Score=100.23 Aligned_cols=79 Identities=25% Similarity=0.398 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+-+|||-||.. +.-|..|+++|++||-|.. +.+.+|..|.+.|||+||.+.+-++|.-||..|||+.++.+
T Consensus 277 ~g~ciFvYNLsp------d~de~~LWQlFgpFGAv~n--VKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 277 GGWCIFVYNLSP------DADESILWQLFGPFGAVTN--VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred CeeEEEEEecCC------CchHhHHHHHhCcccceee--EEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 356999999997 5559999999999999999 99999998999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+|.|+..
T Consensus 349 -vLQVsFK 355 (360)
T KOG0145|consen 349 -VLQVSFK 355 (360)
T ss_pred -EEEEEEe
Confidence 8888764
|
|
| >KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-10 Score=114.75 Aligned_cols=81 Identities=27% Similarity=0.423 Sum_probs=75.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
..+.|||+|+|. +..++.|..+|+..|.|.. +.+..|++||++|||||++|.+.++|..|++.|||..+.++
T Consensus 17 ~~~~v~vgnip~------~~se~~l~~~~~~~g~v~s--~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr 88 (435)
T KOG0108|consen 17 LSSSVFVGNIPY------EGSEEQLLSIFSGVGPVLS--FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR 88 (435)
T ss_pred cccceEecCCCC------cccHHHHHHHHhccCccce--eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc
Confidence 338999999998 6679999999999999999 99999999999999999999999999999999999999996
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.|+|+....
T Consensus 89 -~l~v~~~~~ 97 (435)
T KOG0108|consen 89 -KLRVNYASN 97 (435)
T ss_pred -eEEeecccc
Confidence 888887654
|
|
| >smart00360 RRM RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.4e-10 Score=84.87 Aligned_cols=70 Identities=36% Similarity=0.584 Sum_probs=61.7
Q ss_pred ECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEE
Q 005140 64 VDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 142 (712)
Q Consensus 64 v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v 142 (712)
|.|||. ...+.+|+++|++||.|.. +.++.++.+++++|||||+|.+.++|.+|++.+++..+.++ .+.|
T Consensus 1 i~~l~~------~~~~~~l~~~f~~~g~v~~--~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~-~~~v 70 (71)
T smart00360 1 VGNLPP------DVTEEELRELFSKFGKIES--VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR-PLKV 70 (71)
T ss_pred CCCCCc------ccCHHHHHHHHHhhCCEeE--EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc-EEEe
Confidence 578886 4458999999999999999 99999988899999999999999999999999999988774 5443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-07 Score=88.95 Aligned_cols=237 Identities=17% Similarity=0.152 Sum_probs=150.2
Q ss_pred ceEEEcC-CCcEEEEEecCc--eEEeecccCcceeeeecCCC----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 217 SFVQWSP-LGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQ----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 217 ~~v~~Sp-dg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~----v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
..++.+| .+..+|++-..| ..+||.. ++.....+..+. --.-.|||||++|++.-.+ -+...|.|-|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~-~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd-----~~~g~G~IgV 81 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCR-TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND-----YETGRGVIGV 81 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcC-CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc-----cCCCcEEEEE
Confidence 3578899 677888888888 5699999 777777665332 2357899999999998776 2334489999
Q ss_pred EEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecC-------------------CeEEEEEcCC
Q 005140 290 FDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK-------------------NMISVYETES 349 (712)
Q Consensus 290 wd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d-------------------~~i~iwd~~~ 349 (712)
||.. +-+.+..|..+..... .+.|.| ||+.|+.+.. -++...|..+
T Consensus 82 yd~~~~~~ri~E~~s~GIGPH-------------el~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPH-------------ELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred EECcCCcEEEeEecCCCcChh-------------hEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 9997 5566777776643321 488999 9987776542 1355556677
Q ss_pred ceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEE
Q 005140 350 FTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 350 ~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 425 (712)
|.++.+..+ +.-.+..+++.++|..++-..... +... .-..++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg--------------~~~~-------------------~~PLva 194 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG--------------DPGD-------------------APPLVA 194 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCC--------------CCCc-------------------cCCeEE
Confidence 777765433 444588888888876655421110 0000 000111
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
....+.. +.++.+.... ...+ .+.+-+++++++|..+++++-.+. .+.+||..++.
T Consensus 195 ~~~~g~~---------~~~~~~p~~~----~~~l---~~Y~gSIa~~~~g~~ia~tsPrGg--~~~~~d~~tg~------ 250 (305)
T PF07433_consen 195 LHRRGGA---------LRLLPAPEEQ----WRRL---NGYIGSIAADRDGRLIAVTSPRGG--RVAVWDAATGR------ 250 (305)
T ss_pred EEcCCCc---------ceeccCChHH----HHhh---CCceEEEEEeCCCCEEEEECCCCC--EEEEEECCCCC------
Confidence 1111110 1122211100 0123 678999999999999998887663 89999987765
Q ss_pred EEEEeCCCceeEEEEccCCCeEEEEe
Q 005140 506 KLTTLKGKQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 506 ~~~~~~~~~v~~l~~spdg~~l~~~~ 531 (712)
.+....-..+..++-.+++ ++++.+
T Consensus 251 ~~~~~~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 251 LLGSVPLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EeeccccCceeeeeecCCc-eEEeCC
Confidence 4554444456777777777 666665
|
|
| >smart00362 RRM_2 RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=84.37 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=62.4
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|+|.|||. .....+|+++|.+||.|.. +.+..++ +.++|+|||+|.+.++|.+|++.++|..+.++ .+
T Consensus 1 ~v~i~~l~~------~~~~~~l~~~~~~~g~v~~--~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~-~i 69 (72)
T smart00362 1 TLFVGNLPP------DVTEEDLKELFSKFGPIES--VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR-PL 69 (72)
T ss_pred CEEEcCCCC------cCCHHHHHHHHHhcCCEEE--EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE-EE
Confidence 489999997 4448899999999999999 9999887 78999999999999999999999999988774 55
Q ss_pred EE
Q 005140 141 AV 142 (712)
Q Consensus 141 ~v 142 (712)
.|
T Consensus 70 ~v 71 (72)
T smart00362 70 RV 71 (72)
T ss_pred ee
Confidence 44
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-08 Score=101.25 Aligned_cols=272 Identities=15% Similarity=0.222 Sum_probs=175.8
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce---------------eeeccCCCcccccCCCCCcCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV---------------MRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~---------------~~~~~~~~~~~~~~~~~~~~~ 318 (712)
-...|+.|+....|||.|+.+ |.++|..+.+... -.++.+|...+.
T Consensus 15 vkL~c~~WNke~gyIAcgG~d----------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~--------- 75 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGAD----------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVM--------- 75 (1189)
T ss_pred ceEEEEEEcccCCeEEecccc----------ceeEEEEccccCCcccccccccccccchhhhhccCcceEE---------
Confidence 348899999999999999999 9999998754321 123455555442
Q ss_pred CCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 319 VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 319 ~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
.+.|.. ..+.|.++. +|-|.||-+-.+........ ...-|.+++|..+|..|+. ...|+.+.|-..+
T Consensus 76 ----vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcI-----vYeDGavIVGsvd 145 (1189)
T KOG2041|consen 76 ----VVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICI-----VYEDGAVIVGSVD 145 (1189)
T ss_pred ----EEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEE-----EEccCCEEEEeec
Confidence 578988 888888887 99999999887764433211 2234899999999999887 5577777665554
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC----cceeEEE----ecCCCCceE
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----IPIEVLE----LDNKNDKII 467 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~----l~~h~~~v~ 467 (712)
... +-.+.+.......+.|++|.+.++++...+. ..+|+....- .....+. +......|-
T Consensus 146 GNR---IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange---------~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia 213 (1189)
T KOG2041|consen 146 GNR---IWGKELKGQLLAHVLWSEDLEQALFKKANGE---------THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIA 213 (1189)
T ss_pred cce---ecchhcchheccceeecccHHHHHhhhcCCc---------EEEecccccHHHhhhhceEEeeeeeecCCCcccc
Confidence 432 1111111112224579999887766555433 5566543210 0000011 111122355
Q ss_pred EEEEe--------eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccC-----
Q 005140 468 AFAWE--------PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG----- 534 (712)
Q Consensus 468 ~~~~s--------p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~----- 534 (712)
.+.|. |+...|+++...| .+.|..-.+... ++-.-.+..+....|+++|..|++++...
T Consensus 214 ~i~w~~g~~~~v~pdrP~lavcy~nG---r~QiMR~eND~~-----Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 214 EIEWNTGPYQPVPPDRPRLAVCYANG---RMQIMRSENDPE-----PVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred ceeeccCccccCCCCCCEEEEEEcCc---eehhhhhcCCCC-----CeEEecccEeecceecCCCcEEEEccCcccccCc
Confidence 56663 5788999999888 777765443322 33222245688899999999999987632
Q ss_pred -CCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 535 -FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 535 -~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
..+.|.+|..- |+.+.+ .....|++++|-..|-.+|.+..
T Consensus 286 ~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 286 TDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred cccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence 22467777654 455544 45578999999999999888875
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-09 Score=104.46 Aligned_cols=115 Identities=12% Similarity=0.202 Sum_probs=82.2
Q ss_pred cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 ~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
+|.+ |.++.|+.+|.+|++|+.| ..+.|||.-..+++..+. +|...+ + +++|-|.
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD----------~r~ivWd~~~~KllhsI~TgHtaNI------------F-svKFvP~ 104 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDD----------TRLIVWDPFEYKLLHSISTGHTANI------------F-SVKFVPY 104 (758)
T ss_pred cccceecceeecCCCCEEeecCCc----------ceEEeecchhcceeeeeecccccce------------e-EEeeecc
Confidence 3555 9999999999999999999 899999998888777764 454444 2 5788875
Q ss_pred -CCCEEEEec-CCeEEEEEcCCce----------ecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEE
Q 005140 330 -KDKYFAKLG-KNMISVYETESFT----------LIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 330 -dg~~la~~~-d~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~ 394 (712)
++..++++. |..|++||+...+ .+.-...|...|..++-.|++.. +.+ ++.|+.++-+.+
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws-----asEDGtirQyDi 177 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS-----ASEDGTIRQYDI 177 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE-----ecCCcceeeecc
Confidence 345666766 9999999998421 11222346667888888888844 444 566776664433
|
|
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=117.47 Aligned_cols=80 Identities=31% Similarity=0.459 Sum_probs=72.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+|||+|||. ...+.+|+++|++||.|.. |.++.|+.+|+++|||||+|.+.++|.+|+..|||+.+.++
T Consensus 186 ~~~l~v~nl~~------~~te~~l~~~f~~~G~i~~--v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~- 256 (457)
T TIGR01622 186 FLKLYVGNLHF------NITEQELRQIFEPFGDIED--VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR- 256 (457)
T ss_pred CCEEEEcCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE-
Confidence 57999999996 4448899999999999999 99999999999999999999999999999999999999884
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|....+
T Consensus 257 ~i~v~~a~~ 265 (457)
T TIGR01622 257 PIKVGYAQD 265 (457)
T ss_pred EEEEEEccC
Confidence 888887653
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-08 Score=109.22 Aligned_cols=259 Identities=9% Similarity=0.116 Sum_probs=156.3
Q ss_pred EEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee-----cccccc--ccc
Q 005140 290 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-----IDKKSL--KVE 361 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~-----~~~~~~--~~~ 361 (712)
|+. .|..+..+..|...+. .++.++..+.+|++++ ||+|++|++..... -..... ...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~-------------k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVI-------------KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS 1099 (1431)
T ss_pred CCc-cceEeehhhhcccccc-------------ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC
Confidence 664 7888888877766552 3455551558999999 99999999863211 111112 233
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-----ceeeeeee-eecceeE-EEC-cCCC-EEEEEEcccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-----ELRQKNLF-SVSDCKM-YWQ-SSGD-YLAVKVDRYT 432 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~-~~~~~~~-~~s-~~g~-~l~~~~~~~~ 432 (712)
.+.++...+.+..+|+ ++.||.+++...+..... ..+..+.. ....++| ++. ..+. .|++++.-..
T Consensus 1100 r~~~vt~~~~~~~~Av-----~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAV-----STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred ceEEEEeccCCCeEEE-----EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 5888999999999999 778888887776652111 11111111 1122222 121 2233 4444444333
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK- 511 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~- 511 (712)
+..|+++..... ..+......+.|++++.+|.+.++++|...| .+.+||++-+. ++.+..
T Consensus 1175 ---------iv~~D~r~~~~~-w~lk~~~~hG~vTSi~idp~~~WlviGts~G---~l~lWDLRF~~------~i~sw~~ 1235 (1431)
T KOG1240|consen 1175 ---------IVSWDTRMRHDA-WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG---QLVLWDLRFRV------PILSWEH 1235 (1431)
T ss_pred ---------eEEecchhhhhH-HhhhcCccccceeEEEecCCceEEEEecCCc---eEEEEEeecCc------eeecccC
Confidence 667776542211 1122333478999999999999999999988 89999997544 333332
Q ss_pred -C-CceeEEEEcc---CCCeEEEEeccCCCceEEEEECCcceeeee---c-c-----------------ccceeeEEECC
Q 005140 512 -G-KQANALFWSP---SGRFIVLAGLKGFNGQLEFYNVDELETMAT---A-E-----------------HFMATDVEWDP 565 (712)
Q Consensus 512 -~-~~v~~l~~sp---dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~-~-----------------~~~v~~~~~sp 565 (712)
. .+++.+...| .....++++.. ..+.|.+|++.++..-.. . . .-......+.-
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~-~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSS-SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE 1314 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEeccc-CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc
Confidence 1 2456665555 34566666542 278999999987643221 1 0 00111233334
Q ss_pred CCCEEEEEEccceeccccEEEEEecCc
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
-+.++.+|++ |..|+.||....
T Consensus 1315 ~~~~~ltggs-----d~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1315 KNGFLLTGGS-----DMKIRKWDPTRP 1336 (1431)
T ss_pred CCceeeecCC-----ccceeeccCCCc
Confidence 4567888888 999999998743
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-10 Score=110.33 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=70.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY-KLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~-~~~~~ 137 (712)
+.++||+-|++ ...|.++++||++||.|++ |+|.+|+ .|.+||+|||.|++++-|..||+.|||. .+.|+
T Consensus 124 e~KLFvg~lsK------~~te~evr~iFs~fG~Ied--~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc 194 (510)
T KOG0144|consen 124 ERKLFVGMLSK------QCTENEVREIFSRFGHIED--CYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC 194 (510)
T ss_pred chhhhhhhccc------cccHHHHHHHHHhhCccch--hhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccC
Confidence 56899999997 5569999999999999999 9999998 8999999999999999999999999995 55666
Q ss_pred eEEEEEeeccccc
Q 005140 138 HIFAVNMFDDFDK 150 (712)
Q Consensus 138 ~~l~v~~~~~~~~ 150 (712)
....|-+|.|-+|
T Consensus 195 s~PLVVkFADtqk 207 (510)
T KOG0144|consen 195 SQPLVVKFADTQK 207 (510)
T ss_pred CCceEEEecccCC
Confidence 5555555555333
|
|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=119.42 Aligned_cols=78 Identities=27% Similarity=0.361 Sum_probs=70.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+|||+|||. ...+..|+++|++||.|.. +.++.|..+|+++|||||+|.+.++|..|+..|||..++++
T Consensus 295 ~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~- 365 (509)
T TIGR01642 295 KDRIYIGNLPL------YLGEDQIKELLESFGDLKA--FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN- 365 (509)
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe-
Confidence 47999999997 4448899999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 366 ~l~v~~a 372 (509)
T TIGR01642 366 KLHVQRA 372 (509)
T ss_pred EEEEEEC
Confidence 6777654
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=120.03 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=68.5
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
.|||+|||. +..++.|+++|++||.|.+ |.|.+|..|++++|||||+|.+.++|.+|++.+|+..+.++ .+
T Consensus 2 sl~VgnLp~------~vte~~L~~~F~~~G~v~~--v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk-~i 72 (562)
T TIGR01628 2 SLYVGDLDP------DVTEAKLYDLFKPFGPVLS--VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK-PI 72 (562)
T ss_pred eEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-eE
Confidence 699999997 5559999999999999999 99999999999999999999999999999999999989885 66
Q ss_pred EEEe
Q 005140 141 AVNM 144 (712)
Q Consensus 141 ~v~~ 144 (712)
++..
T Consensus 73 ~i~~ 76 (562)
T TIGR01628 73 RIMW 76 (562)
T ss_pred Eeec
Confidence 6644
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >PF13893 RRM_5: RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=76.94 Aligned_cols=55 Identities=24% Similarity=0.484 Sum_probs=47.5
Q ss_pred HHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEe
Q 005140 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 82 l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~ 144 (712)
|+++|++||.|.+ +.+..+. +|+|||+|.+.++|.+|++.|||..+.++ +++|..
T Consensus 1 L~~~f~~fG~V~~--i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~-~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKK--IKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGR-PLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEE--EEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTE-EEEEEE
T ss_pred ChHHhCCcccEEE--EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEE
Confidence 6899999999999 8886553 69999999999999999999999999886 777753
|
(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-07 Score=98.09 Aligned_cols=211 Identities=14% Similarity=0.178 Sum_probs=135.3
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CC--eEEEEEcCCceeccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KN--MISVYETESFTLIDKKSLK 359 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~--~i~iwd~~~~~~~~~~~~~ 359 (712)
..+.+-|.. |...+.+........ ..+|+| +++.++... .+ .+.++++.++....... .
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~-------------~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~ 236 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLIL-------------TPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-F 236 (425)
T ss_pred ceEEEEccC-CcceeEecccCccee-------------ccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-c
Confidence 456666643 555555544433321 358999 999877765 33 58888988765432221 1
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
...-...+|||||+.|++. ...++...||++++......+ .+-.........|+|+|+++++.+++...
T Consensus 237 ~g~~~~P~fspDG~~l~f~----~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~------ 305 (425)
T COG0823 237 NGNNGAPAFSPDGSKLAFS----SSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGR------ 305 (425)
T ss_pred CCccCCccCCCCCCEEEEE----ECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCC------
Confidence 1223456899999999985 346788899999998776333 22233333467899999999999887542
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-ceeEE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-QANAL 518 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~l 518 (712)
..+|.++..+.....++... +.-....|||||++|++.+..++.-.|.++++.++.. +..+... .....
T Consensus 306 --p~I~~~~~~g~~~~riT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~------~~~lt~~~~~e~p 375 (425)
T COG0823 306 --PQIYLYDLEGSQVTRLTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK------IRILTSTYLNESP 375 (425)
T ss_pred --cceEEECCCCCceeEeeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc------EEEccccccCCCC
Confidence 36777766665555555532 2222789999999999998543222466666654331 3333322 34568
Q ss_pred EEccCCCeEEEEec
Q 005140 519 FWSPSGRFIVLAGL 532 (712)
Q Consensus 519 ~~spdg~~l~~~~~ 532 (712)
.|.|+|+.+...+.
T Consensus 376 s~~~ng~~i~~~s~ 389 (425)
T COG0823 376 SWAPNGRMIMFSSG 389 (425)
T ss_pred CcCCCCceEEEecc
Confidence 89999999888764
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-08 Score=92.92 Aligned_cols=112 Identities=12% Similarity=0.203 Sum_probs=87.2
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eC--CCceeE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LK--GKQANA 517 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~--~~~v~~ 517 (712)
.+++|+.+....|+..+.+. ..+++++...|+|+.++++..-+ .+..||++++. .+.. +. .+.+.+
T Consensus 227 qvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g---~l~~FD~r~~k------l~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 227 QVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKG---QLAKFDLRGGK------LLGCGLKGITGSIRS 295 (412)
T ss_pred eEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccc---hhheecccCce------eeccccCCccCCcce
Confidence 37888888777777666653 67899999999999999998888 89999998765 3333 33 347899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCC
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPT 566 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spd 566 (712)
+..+|.+++|++++. |..|+|+|+++.+++.. .-...++++-+.++
T Consensus 296 ih~hp~~~~las~GL---DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGL---DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EEEcCCCceEEeecc---ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999999 99999999998777654 22345556555543
|
|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.3e-10 Score=110.86 Aligned_cols=77 Identities=29% Similarity=0.516 Sum_probs=70.8
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~ 141 (712)
+||+||-. ...+..|+.+|++||.|.. |.+++|.+||.+|||+||+|.+.++|.+|+++|||+.|.|+ .++
T Consensus 281 l~vgnLHf------Nite~~lr~ifepfg~Ie~--v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr-~ik 351 (549)
T KOG0147|consen 281 LYVGNLHF------NITEDMLRGIFEPFGKIEN--VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR-LIK 351 (549)
T ss_pred hhhccccc------CchHHHHhhhccCccccee--eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCc-eEE
Confidence 89999997 4558899999999999999 99999999999999999999999999999999999999996 777
Q ss_pred EEeecc
Q 005140 142 VNMFDD 147 (712)
Q Consensus 142 v~~~~~ 147 (712)
|....+
T Consensus 352 V~~v~~ 357 (549)
T KOG0147|consen 352 VSVVTE 357 (549)
T ss_pred EEEeee
Confidence 877554
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-09 Score=117.90 Aligned_cols=81 Identities=23% Similarity=0.330 Sum_probs=71.7
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-++.|||+|||. ...++.|+++|++||.|++ +.++.|. +|+++|||||+|.+.++|.+|+..|||..+++
T Consensus 283 ~~~~~l~V~nl~~------~~~~~~L~~~F~~~G~i~~--~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 283 AQGVNLYVKNLDD------TVTDEKLRELFSECGEITS--AKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred cCCCEEEEeCCCC------ccCHHHHHHHHHhcCCeEE--EEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Confidence 3567899999997 4448899999999999999 9999995 99999999999999999999999999999988
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 354 k-~l~V~~a~~ 363 (562)
T TIGR01628 354 K-PLYVALAQR 363 (562)
T ss_pred c-eeEEEeccC
Confidence 6 777776543
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-09 Score=115.58 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=69.7
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-..+|||+|||. ...+.+|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|+. |||..+.
T Consensus 86 ~~~~~~l~V~nlp~------~~~~~~l~~~F~~~G~v~~--v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~ 156 (457)
T TIGR01622 86 ERDDRTVFVLQLAL------KARERDLYEFFSKVGKVRD--VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL 156 (457)
T ss_pred ccCCcEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC
Confidence 33568999999997 5558899999999999999 9999999999999999999999999999996 8999998
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
++ .+.+..
T Consensus 157 g~-~i~v~~ 164 (457)
T TIGR01622 157 GR-PIIVQS 164 (457)
T ss_pred Ce-eeEEee
Confidence 85 665543
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-09 Score=104.66 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=73.9
Q ss_pred cccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh----
Q 005140 54 VESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT---- 129 (712)
Q Consensus 54 ~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~---- 129 (712)
.+.+++.+|||.|||+ +..++.|...|++||+|.. +.+.+|+.||.++|-|||.|.++.+|.+||...
T Consensus 287 en~~~~~tVFvRNL~f------D~tEEel~~~fskFG~v~y--a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~ 358 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPF------DTTEEELKEHFSKFGEVKY--AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPAS 358 (678)
T ss_pred ccccccceEEEecCCc------cccHHHHHHHHHhhcccee--EEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccC
Confidence 3456889999999998 7779999999999999999 999999999999999999999999999999976
Q ss_pred -CC-CccCCceEEEEEeecc
Q 005140 130 -NG-YKLDRAHIFAVNMFDD 147 (712)
Q Consensus 130 -~~-~~~~~~~~l~v~~~~~ 147 (712)
.| +.|+|+ .|+|...-.
T Consensus 359 e~g~~ll~GR-~Lkv~~Av~ 377 (678)
T KOG0127|consen 359 EDGSVLLDGR-LLKVTLAVT 377 (678)
T ss_pred CCceEEEecc-EEeeeeccc
Confidence 34 667775 777776433
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-06 Score=90.10 Aligned_cols=376 Identities=14% Similarity=0.165 Sum_probs=206.2
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCC------C------cEEEEEecCc-eEEeecccCcceeeeecCCC--eeEEE
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPL------G------TYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VKLID 260 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spd------g------~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~~i~ 260 (712)
+-+. ...+.+..+..|+..|+.+.|+|- + -+||++...| |+|||.. ....+..+.|.. +..++
T Consensus 39 VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 39 VVDS-RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-LASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEeh-hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh-hhhhhhhhcCCCcchhhee
Confidence 4444 467788889999999999999883 2 2577777777 9999998 777777776553 88888
Q ss_pred ecC---CC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 261 FSP---GE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 261 ~Sp---dg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
|-| +. ..|+.-... ..|.+|+..+|..+........... ++.+.|-|.+.++.
T Consensus 117 W~~~rd~Srd~LlaIh~s----------s~lvLwntdtG~k~Wk~~ys~~iLs-------------~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGS----------STLVLWNTDTGEKFWKYDYSHEILS-------------CFRVDPFDSRHFCV 173 (1062)
T ss_pred eeeccCcchheeEEecCC----------cEEEEEEccCCceeeccccCCccee-------------eeeeCCCCcceEEE
Confidence 865 34 355555555 6899999999998887766544431 46666533444444
Q ss_pred ec-CCeEEEEEcCC-------ceeccccccccc-----------------C--------eeeEEECCCCCeEEEEeecCC
Q 005140 337 LG-KNMISVYETES-------FTLIDKKSLKVE-----------------N--------VMDFSWSPTDPIISLFVPELG 383 (712)
Q Consensus 337 ~~-d~~i~iwd~~~-------~~~~~~~~~~~~-----------------~--------v~~~~~sp~~~~la~~~~~~~ 383 (712)
.+ .|.+.+-+.-. ++.....+-|.+ + ...++|+|.-+.+++..
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---- 249 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---- 249 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE----
Confidence 44 55555544321 111100000000 0 12467788744443321
Q ss_pred CCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCC--EEEEEEcccccccc--------------cc----c----
Q 005140 384 GGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGD--YLAVKVDRYTKTKK--------------ST----Y---- 439 (712)
Q Consensus 384 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~l~~~~~~~~~~~~--------------~~----~---- 439 (712)
-+-.+.++++.-...+....+.....--+.|-|+++ .|++...++..+.+ .. .
T Consensus 250 ---~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~ 326 (1062)
T KOG1912|consen 250 ---FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVH 326 (1062)
T ss_pred ---eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceE
Confidence 112355666554444443333322222234444443 33333322221000 00 0
Q ss_pred -----------------------------ccEEEEEEecCCccee----E---------------------EEe---cCC
Q 005140 440 -----------------------------TGFELFRIKERDIPIE----V---------------------LEL---DNK 462 (712)
Q Consensus 440 -----------------------------~~~~l~~l~~~~~~~~----~---------------------~~l---~~h 462 (712)
+...+|.+.....+.. . +.+ .+|
T Consensus 327 ~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h 406 (1062)
T KOG1912|consen 327 VVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSH 406 (1062)
T ss_pred EEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCC
Confidence 0111222221000000 0 000 012
Q ss_pred CCceEEEEEe-----------eCC-------CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCC
Q 005140 463 NDKIIAFAWE-----------PKG-------HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 524 (712)
Q Consensus 463 ~~~v~~~~~s-----------p~g-------~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 524 (712)
....++.... |-| ..+|+|...| +|.++|+.++... .-...+...|.++.|-...
T Consensus 407 ~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sG---TV~vvdvst~~v~----~~fsvht~~VkgleW~g~s 479 (1062)
T KOG1912|consen 407 SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSG---TVDVVDVSTNAVA----ASFSVHTSLVKGLEWLGNS 479 (1062)
T ss_pred CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCc---eEEEEEecchhhh----hhhcccccceeeeeeccce
Confidence 2222222111 111 2566677777 8999998765421 1112233357888888777
Q ss_pred CeEEEEeccC------CCceEEEEECCcceeee-----eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce
Q 005140 525 RFIVLAGLKG------FNGQLEFYNVDELETMA-----TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 525 ~~l~~~~~~~------~dg~v~iwd~~~~~~~~-----~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
+++-.+.... .-+.+.+-|+++|.-.. .....+|..+..|..|+||+..-. +.-+-||++.+..
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr-----~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFR-----REPLEIWDLKTLR 554 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEec-----ccchHHHhhccch
Confidence 6655443211 13567788888765433 345578999999999999999999 8999999997653
Q ss_pred eeee---cccceeeeEEe-cCCCCCC
Q 005140 594 LYRT---LKDHFFQFLWR-PRPPSFL 615 (712)
Q Consensus 594 ~~~~---~~~~i~~~~w~-p~~~~l~ 615 (712)
+... ...-|+.+.|+ |.-+.+-
T Consensus 555 ~lr~mS~a~P~it~leWsl~~~~si~ 580 (1062)
T KOG1912|consen 555 MLRLMSLALPLITVLEWSLPKHPSIK 580 (1062)
T ss_pred HHHHHhhcCCcEEEEeecccCCCCcc
Confidence 3332 22458999999 5544443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=101.06 Aligned_cols=291 Identities=13% Similarity=0.143 Sum_probs=179.1
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc-ccccccCeeeEEECCC--C
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVMDFSWSPT--D 372 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~--~ 372 (712)
+...+..|.+.+. .+.|.. .|..|++++ |..|.+||...+..... ...|...|-...|-|. .
T Consensus 134 l~~kL~~H~GcVn-------------tV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 134 LQKKLNKHKGCVN-------------TVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hhhcccCCCCccc-------------eeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC
Confidence 3455677777653 588999 999999999 89999999887664432 3456666666667664 4
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccc-eeeeeeeeecceeEEECcCCCE-EEEEEcccccccccccccEEEEEEecC
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEE-LRQKNLFSVSDCKMYWQSSGDY-LAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
..|+. ++.++.+++.......... ......+......++.-|+..+ |.+++.+.. +.-++++..
T Consensus 200 ~ti~~-----~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~---------v~~~Dlr~~ 265 (559)
T KOG1334|consen 200 RTIVT-----SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV---------VFHIDLRQD 265 (559)
T ss_pred cCcee-----ccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccc---------eeeeeeccC
Confidence 66776 7788888876655443221 2222223344444455555443 333333332 223333322
Q ss_pred CcceeEEE-ecCCCC---ceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--------CCceeE
Q 005140 451 DIPIEVLE-LDNKND---KIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--------GKQANA 517 (712)
Q Consensus 451 ~~~~~~~~-l~~h~~---~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------~~~v~~ 517 (712)
.|...+. -..+.. ...+++..|.. ..||+++.|. -+++||.+.-........+..+. .-.|++
T Consensus 266 -~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq---f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 266 -VPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ---FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred -CccceeeeeccCCccceeeeeEecCCCCccccccCChhh---hhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence 2222222 112222 45678888855 4888888887 88999987543321122222221 114899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECC--cc-------------eeeeeccc--cceeeEE-ECCCCCEEEEEEcccee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVD--EL-------------ETMATAEH--FMATDVE-WDPTGRYVATAVTSVHE 579 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~-------------~~~~~~~~--~~v~~~~-~spdg~~l~t~s~~~~~ 579 (712)
++||.+|.-|+++-. |-.|++|.-. .| +.+.++|. ..|-.+- |-|...|+++|+.
T Consensus 342 l~Ysh~~sElLaSYn---De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD---- 414 (559)
T KOG1334|consen 342 LVYSHDGSELLASYN---DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD---- 414 (559)
T ss_pred EEecCCccceeeeec---ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc----
Confidence 999977766665555 8889999543 12 11223444 2344554 6789999999998
Q ss_pred ccccEEEEEecCceeeee---cccceeeeEEecCCCCCCChhhHHHHHHHH
Q 005140 580 MENGFNIWSFNGKLLYRT---LKDHFFQFLWRPRPPSFLTPEKEEEIAKNL 627 (712)
Q Consensus 580 ~d~~v~iw~~~g~~~~~~---~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~ 627 (712)
=|.|+||+-.+..+... ...-|+++.=+|.-+.|+|++-|..||.|-
T Consensus 415 -CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 415 -CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred -cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 79999999875433322 223688888888889999998888877554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-07 Score=97.66 Aligned_cols=225 Identities=18% Similarity=0.313 Sum_probs=139.8
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.+..-.|+|++..++++.-.. .+..+++++++...+.....+ +........|+|+|+.|++...+.. .
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~---~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg--------~ 261 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFEL---GGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG--------S 261 (425)
T ss_pred ceeccccCcCCCceEEEEEec---CCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC--------C
Confidence 466778999999988754322 222678888887765444333 3334445689999999999877642 2
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
..||.++..+..... +....+.-..-.|+|||+++++.+..++.+.|.+++++.... ...+.....-....||
T Consensus 262 ~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----~riT~~~~~~~~p~~S 334 (425)
T COG0823 262 PDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----TRLTFSGGGNSNPVWS 334 (425)
T ss_pred ccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----eEeeccCCCCcCccCC
Confidence 455555544433222 333344444789999999999999988777888888876542 2223333333488999
Q ss_pred cCCCeEEEEeccCCCce--EEEEECCcceeee-eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeec
Q 005140 522 PSGRFIVLAGLKGFNGQ--LEFYNVDELETMA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL 598 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~--v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~ 598 (712)
|||++|++.+.. +|. |.+.++.++..+. ...........|.|+|+.+...+... .+..+..-+..|+.....+
T Consensus 335 pdG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~--~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 335 PDGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG--GGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC--CCceEEEeeccceeEEEEe
Confidence 999999998741 344 6667766554222 23334445789999999998888730 0122222233454443332
Q ss_pred c--cceeeeEEec
Q 005140 599 K--DHFFQFLWRP 609 (712)
Q Consensus 599 ~--~~i~~~~w~p 609 (712)
. ..+...+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 2 3455555655
|
|
| >cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=79.26 Aligned_cols=72 Identities=32% Similarity=0.544 Sum_probs=62.9
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
.|+|.|||. ...+..|+++|+.+|.|.. +.++.++.+ +++|+|||+|.+.++|..|++.+++..+.++ .+
T Consensus 1 ~i~i~~l~~------~~~~~~i~~~~~~~g~i~~--~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~-~~ 70 (74)
T cd00590 1 TLFVGNLPP------DVTEEDLRELFSKFGKVES--VRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGR-PL 70 (74)
T ss_pred CEEEeCCCC------ccCHHHHHHHHHhcCCEEE--EEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCe-EE
Confidence 379999997 3448899999999999999 999998844 8899999999999999999999999988775 55
Q ss_pred EE
Q 005140 141 AV 142 (712)
Q Consensus 141 ~v 142 (712)
.|
T Consensus 71 ~v 72 (74)
T cd00590 71 RV 72 (74)
T ss_pred EE
Confidence 54
|
This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). |
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.4e-09 Score=101.83 Aligned_cols=73 Identities=27% Similarity=0.505 Sum_probs=64.2
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||.|||. ..+++.|+++|++||.|.. |..|+| ||||-|.++++|.+|++.+||+.|++. .+
T Consensus 261 vLYVRNL~~------~tTeE~lk~~F~~~G~veR--Vkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~-~i 323 (506)
T KOG0117|consen 261 VLYVRNLME------STTEETLKKLFNEFGKVER--VKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGS-PI 323 (506)
T ss_pred eeeeeccch------hhhHHHHHHHHHhccceEE--eecccc--------eeEEeecchHHHHHHHHHhcCceecCc-eE
Confidence 899999998 5568999999999999999 877755 999999999999999999999999994 88
Q ss_pred EEEeeccccc
Q 005140 141 AVNMFDDFDK 150 (712)
Q Consensus 141 ~v~~~~~~~~ 150 (712)
-|...+..++
T Consensus 324 EvtLAKP~~k 333 (506)
T KOG0117|consen 324 EVTLAKPVDK 333 (506)
T ss_pred EEEecCChhh
Confidence 8777665443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.6e-07 Score=98.45 Aligned_cols=180 Identities=12% Similarity=0.156 Sum_probs=132.2
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCC----cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-ee
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSY----WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VK 257 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~ 257 (712)
+.++...+..+.+|+. .........+... .++.-+.+|++.=++++|+--+ +++|.............|.+ +.
T Consensus 101 ~i~l~~~~ns~~i~d~-~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF 179 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDS-KNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIF 179 (967)
T ss_pred eEEEEEcCceEEEEec-ccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceE
Confidence 5667777777778877 3333222222222 2233456788888999998776 99999874555665556666 99
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee-eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR-DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
++.||-||+|+++.|.| .++++|++.+++.+. ..-+|...+ |. +++.| + ++++
T Consensus 180 ~i~~s~dg~~i~s~SdD----------RsiRlW~i~s~~~~~~~~fgHsaRv------------w~-~~~~~-n--~i~t 233 (967)
T KOG0974|consen 180 SIVTSLDGRYIASVSDD----------RSIRLWPIDSREVLGCTGFGHSARV------------WA-CCFLP-N--RIIT 233 (967)
T ss_pred EEEEccCCcEEEEEecC----------cceeeeecccccccCccccccccee------------EE-EEecc-c--eeEE
Confidence 99999999999999999 999999999998776 555666665 74 88988 6 8889
Q ss_pred ec-CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
++ |-+.++|..+. ..+.....|.. ++..++.+++...+++ ++.|+..++|.+..
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT-----~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVT-----GGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEe-----eccCcchhhhhhhc
Confidence 88 99999997663 33334444543 5899999998888888 77888888776543
|
|
| >COG0724 RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-09 Score=105.06 Aligned_cols=79 Identities=32% Similarity=0.520 Sum_probs=72.6
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..++.|+++|.+||.|.. +.++.|+.+|+++|||||+|.+.++|..|++.++|..+.++
T Consensus 115 ~~~l~v~nL~~------~~~~~~l~~~F~~~g~~~~--~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~- 185 (306)
T COG0724 115 NNTLFVGNLPY------DVTEEDLRELFKKFGPVKR--VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR- 185 (306)
T ss_pred CceEEEeCCCC------CCCHHHHHHHHHhcCceeE--EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc-
Confidence 69999999996 5669999999999999999 99999988999999999999999999999999999999986
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 186 ~~~v~~~~ 193 (306)
T COG0724 186 PLRVQKAQ 193 (306)
T ss_pred eeEeeccc
Confidence 77776643
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=102.38 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=107.2
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--cee
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QAN 516 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~ 516 (712)
++++.+|.......+. .+.+|.+.|.++.|+-||.++++.+.|. ++++|++++.... ....-+| .+.
T Consensus 154 ~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDR---siRlW~i~s~~~~-----~~~~fgHsaRvw 222 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGRYIASVSDDR---SIRLWPIDSREVL-----GCTGFGHSARVW 222 (967)
T ss_pred cccEEEEeccccCCcc---eecccCCceEEEEEccCCcEEEEEecCc---ceeeeeccccccc-----CcccccccceeE
Confidence 4458889888666664 6779999999999999999999999999 9999999876542 1122234 678
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
.++|.|+ .+++++. |.+.++|+.+. .++.. .| ...+..++..++...++|++. |+++++|++.+..
T Consensus 223 ~~~~~~n--~i~t~ge---dctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~-----Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGE---DCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN-----DSTLKLWDLNGRG 291 (967)
T ss_pred EEEeccc--eeEEecc---ceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeecc-----Ccchhhhhhhccc
Confidence 9999998 8999998 99999997763 33322 23 367889999999999999999 9999999987654
Q ss_pred e
Q 005140 594 L 594 (712)
Q Consensus 594 ~ 594 (712)
.
T Consensus 292 ~ 292 (967)
T KOG0974|consen 292 L 292 (967)
T ss_pred c
Confidence 3
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-09 Score=96.82 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=71.3
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-..+|.|||-+||. +.-..+|..+|-+||.|++ ..+-+|+.|..+|.|+||.|.++..|+.||..|||+.|+
T Consensus 282 GPeGCNlFIYHLPQ------EFgDaEliQmF~PFGhivS--aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQ------EFGDAELIQMFLPFGHIVS--AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred CCCcceEEEEeCch------hhccHHHHHHhccccceee--eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh
Confidence 33689999999997 6668889999999999999 889999999999999999999999999999999999997
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
-+ +|+|-.
T Consensus 354 MK-RLKVQL 361 (371)
T KOG0146|consen 354 MK-RLKVQL 361 (371)
T ss_pred hh-hhhhhh
Confidence 54 565543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-06 Score=81.88 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=83.2
Q ss_pred EEEcCCCcEEEEEecCceEEeecccCcce---eeee---cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 219 VQWSPLGTYLATVHRQGAAVWGGANTFNR---LMRY---AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~i~iw~~~~~~~~---~~~~---~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
++.+++|++||..-...|-|-.....+.. .++. +++.-+-++||||+..||.+... |+|++||+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~----------G~i~vfdl 72 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST----------GTIRVFDL 72 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC----------CeEEEEec
Confidence 67889999999998777767655433332 2223 34568999999999999999999 99999998
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcC----eEEecCCCCCEEEEecCCeEEEEEcCCce-----ecccccc---cc
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWP----VFRWGGGKDKYFAKLGKNMISVYETESFT-----LIDKKSL---KV 360 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~dg~~la~~~d~~i~iwd~~~~~-----~~~~~~~---~~ 360 (712)
.|..+..+....... ......+.|+.+. .-.|+. .+|+..-.|.++-|-+..+. ......+ ..
T Consensus 73 -~g~~lf~I~p~~~~~-~d~~~Aiagl~Fl~~~~s~~ws~---ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 73 -MGSELFVIPPAMSFP-GDLSDAIAGLIFLEYKKSAQWSY---ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP 147 (282)
T ss_pred -ccceeEEcCcccccC-CccccceeeeEeeccccccccce---eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence 555555555432111 0111122221110 112222 33444347777766653221 1111111 12
Q ss_pred cCeeeEEECCCCCeEEE
Q 005140 361 ENVMDFSWSPTDPIISL 377 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~ 377 (712)
.+|.++.++|..+.|++
T Consensus 148 ~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLV 164 (282)
T ss_pred CceeEEEEcCCCCEEEE
Confidence 35777777777766665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-06 Score=89.77 Aligned_cols=197 Identities=12% Similarity=0.144 Sum_probs=136.3
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC-----------eEEe----
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-----------VFRW---- 326 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---- 326 (712)
.|-+.|+|....+ |.++||+..+++....|....... +.-....|. +..|
T Consensus 2 ~~~~~~~A~~~~~----------g~l~iw~t~~~~~~~e~~p~~~~s-----~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGD----------GRLRIWDTAKNQLQQEFAPIASLS-----GTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCC----------CeEEEEEccCceeeeeeccchhcc-----CcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 4567889998888 999999999988777665432111 000001121 1111
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCceeccccc--ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
+. +-..++-+. .|.|.+|+...+++..+.. .|.++|.++.|+.+-.+|.+ .+...++..|+......++
T Consensus 67 s~-~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS-------~~ad~~v~~~~~~~~~~~~ 138 (541)
T KOG4547|consen 67 SL-DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYS-------VGADLKVVYILEKEKVIIR 138 (541)
T ss_pred cC-CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEe-------cCCceeEEEEecccceeee
Confidence 12 333555555 8999999999888776654 46778999999988888877 4555667777777766666
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-----CCEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-----GHRF 478 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-----g~~l 478 (712)
.....+.....+..+|||..+++++.. +.+|++..+.. ...+++|.++|.+++|--+ |.++
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as~~-----------ik~~~~~~kev---v~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTASRQ-----------IKVLDIETKEV---VITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEeccce-----------EEEEEccCceE---EEEecCCCcceEEEEEEEecccccccee
Confidence 555555556667789999999887664 78999886543 3678999999999999887 7787
Q ss_pred EEEEcCCCCCeEEEEEeec
Q 005140 479 AVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~ 497 (712)
.++..-.. -+.+|-+..
T Consensus 205 Lssa~~~r--~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAER--GITVWVVEK 221 (541)
T ss_pred eecccccc--ceeEEEEEc
Confidence 77655321 566776654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-06 Score=100.78 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=79.2
Q ss_pred ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-----------EeC----------CCceeEEEEccC
Q 005140 465 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-----------TLK----------GKQANALFWSPS 523 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-----------~~~----------~~~v~~l~~spd 523 (712)
....++++|+|++|+++.... +.|++||+.++... .+. .+. ......++++|+
T Consensus 741 ~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSES--SSIRALDLKTGGSR----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEE----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 456799999999777666543 28999998754311 110 010 012357899999
Q ss_pred CCeEEEEeccCCCceEEEEECCcceeeeecc---------------ccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---------------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
|+.+++... ++.|++||..++.+..... -.....++++++|+.+++-+. ++.|++|+
T Consensus 815 G~LYVADs~---N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-----Nn~Irvid 886 (1057)
T PLN02919 815 GQIYVADSY---NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-----NSLIRYLD 886 (1057)
T ss_pred CcEEEEECC---CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-----CCEEEEEE
Confidence 987776665 8999999998766543211 124678999999997777666 89999999
Q ss_pred ecCc
Q 005140 589 FNGK 592 (712)
Q Consensus 589 ~~g~ 592 (712)
+...
T Consensus 887 ~~~~ 890 (1057)
T PLN02919 887 LNKG 890 (1057)
T ss_pred CCCC
Confidence 8754
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-06 Score=80.37 Aligned_cols=246 Identities=13% Similarity=0.146 Sum_probs=152.4
Q ss_pred eeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
...++.+|.. ..++.+-.. - .-..+||..+|+.+..+.......- +| .-.||+ ||++|
T Consensus 7 gH~~a~~p~~~~avafaRRP-G--------~~~~v~D~~~g~~~~~~~a~~gRHF-------yG----Hg~fs~-dG~~L 65 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP-G--------TFALVFDCRTGQLLQRLWAPPGRHF-------YG----HGVFSP-DGRLL 65 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC-C--------cEEEEEEcCCCceeeEEcCCCCCEE-------ec----CEEEcC-CCCEE
Confidence 4578899954 455555544 1 3577999999998887766554431 22 468999 99999
Q ss_pred EEec------CCeEEEEEcC-CceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 335 AKLG------KNMISVYETE-SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 335 a~~~------d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
++.- .|.|-|||.. +...+.....+--+-..+.+.|||+.|++. ++-+.-
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA-------NGGI~T---------------- 122 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA-------NGGIET---------------- 122 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE-------cCCCcc----------------
Confidence 9875 4789999998 555555444444456789999999888872 222110
Q ss_pred eeecceeEEECcCC-C-EEEEEEcccccccccccccEEEEEE-ecCCcceeEEEec--CCCCceEEEEEeeCCCEEEEEE
Q 005140 408 FSVSDCKMYWQSSG-D-YLAVKVDRYTKTKKSTYTGFELFRI-KERDIPIEVLELD--NKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 408 ~~~~~~~~~~s~~g-~-~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
+|+. + .|-..+.+. .|-.+ ...+.-..+..++ -|.-.|..+++.++|..++..-
T Consensus 123 ----------hpd~GR~kLNl~tM~p-----------sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q 181 (305)
T PF07433_consen 123 ----------HPDSGRAKLNLDTMQP-----------SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ 181 (305)
T ss_pred ----------CcccCceecChhhcCC-----------ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe
Confidence 1110 0 000000000 01111 1112223334442 3667899999999987766655
Q ss_pred cCCC----CCeEEEEEeecccccCceeEEEEeC-------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 483 GDSP----RPDISFYSMRTAQHAGRVSKLTTLK-------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 483 ~d~~----~~~v~i~d~~~~~~~~~~~~~~~~~-------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
..+. .+-|-+++.... . .....+ .+.+-+++++++|.++++++- ..+.+.+||..+++.+.
T Consensus 182 ~qg~~~~~~PLva~~~~g~~-----~-~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 182 YQGDPGDAPPLVALHRRGGA-----L-RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVWDAATGRLLG 253 (305)
T ss_pred cCCCCCccCCeEEEEcCCCc-----c-eeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEEECCCCCEee
Confidence 4432 123444443211 0 111111 245789999999998877664 27899999999999998
Q ss_pred eccccceeeEEECCCCCEEEEEEc
Q 005140 552 TAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 552 ~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
...-..+..++-.+++ ++++++.
T Consensus 254 ~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 254 SVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ccccCceeeeeecCCc-eEEeCCC
Confidence 8777778888888888 6666555
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=102.37 Aligned_cols=84 Identities=26% Similarity=0.415 Sum_probs=71.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.-.|+|.|||+-. -..+|..+|++||.|.+ |.||.-+ .|+..|||||.|....+|.+|++.+||..++|+
T Consensus 117 k~rLIIRNLPf~~------k~~dLk~vFs~~G~V~E--i~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR- 186 (678)
T KOG0127|consen 117 KWRLIIRNLPFKC------KKPDLKNVFSNFGKVVE--IVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR- 186 (678)
T ss_pred cceEEeecCCccc------CcHHHHHHHhhcceEEE--EEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCc-
Confidence 5689999999732 26689999999999999 9999888 555669999999999999999999999999996
Q ss_pred EEEEEeeccccccc
Q 005140 139 IFAVNMFDDFDKFM 152 (712)
Q Consensus 139 ~l~v~~~~~~~~~~ 152 (712)
++.|-..-+-..|.
T Consensus 187 ~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 187 PVAVDWAVDKDTYE 200 (678)
T ss_pred eeEEeeeccccccc
Confidence 77776655555554
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7e-07 Score=91.36 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=140.5
Q ss_pred CCCCceEEEEECCeeEEEecCCCCCCCccccc---CCCcccceEEEc------C--------------CCcEEEEEecCc
Q 005140 179 EKARDQFVIRSGTDTEVLWNDARHLKPEPVYK---RSYWTESFVQWS------P--------------LGTYLATVHRQG 235 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~v~~v~~S------p--------------dg~~lat~~~~~ 235 (712)
|.+-++|+...+++...+|+.. ..+....|. +-..++++..|. | |-..||-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~-~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTA-KNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEcc-CceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4466789999999999999983 333322222 223455566662 2 233566666777
Q ss_pred -eEEeecccCcceeeeec---CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 236 -AAVWGGANTFNRLMRYA---HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 236 -i~iw~~~~~~~~~~~~~---~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
|.+|+.. .++...++. |.+ |.++.++.+-..|.+++.+ +.+..|+..+++.++.+......+.
T Consensus 81 ~v~~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad----------~~v~~~~~~~~~~~~~~~~~~~~~~- 148 (541)
T KOG4547|consen 81 SVLLYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD----------LKVVYILEKEKVIIRIWKEQKPLVS- 148 (541)
T ss_pred cEEEEEec-CCeEEEEEecCCCCCcceeeecccccCceEecCCc----------eeEEEEecccceeeeeeccCCCccc-
Confidence 8899988 677666553 554 9999999999999999999 9999999999999999988766553
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCC-----CCeEEEEeecCCCC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPT-----DPIISLFVPELGGG 385 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~la~~~~~~~~~ 385 (712)
.++.+| ||+.+++++ ++|++|++++++++..+..|.+.|++++|--. |.+++.. ...
T Consensus 149 ------------sl~is~-D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss----a~~ 210 (541)
T KOG4547|consen 149 ------------SLCISP-DGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS----AAA 210 (541)
T ss_pred ------------eEEEcC-CCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec----ccc
Confidence 689999 999888765 78999999999999999999999999998766 5666542 223
Q ss_pred CCCeEEEEEecCC
Q 005140 386 NQPARVSLVQIPS 398 (712)
Q Consensus 386 ~~~~~i~~~~~~~ 398 (712)
.....+|..+...
T Consensus 211 ~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 211 ERGITVWVVEKED 223 (541)
T ss_pred ccceeEEEEEccc
Confidence 4445566666533
|
|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-08 Score=105.84 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=65.4
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+++|||+|||.- ...+..|+++|++||.|.+ |.++.++ +|||||+|.+.++|.+|+..|||..+.+
T Consensus 273 ~~~~~l~v~nL~~~-----~vt~~~L~~lF~~yG~V~~--vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g 340 (481)
T TIGR01649 273 GPGSVLMVSGLHQE-----KVNCDRLFNLFCVYGNVER--VKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFG 340 (481)
T ss_pred CCCCEEEEeCCCCC-----CCCHHHHHHHHHhcCCeEE--EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35789999999940 1337889999999999999 9999873 6999999999999999999999999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 341 ~-~l~v~~s 348 (481)
T TIGR01649 341 K-PLRVCPS 348 (481)
T ss_pred c-eEEEEEc
Confidence 5 8888653
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-06 Score=82.53 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=201.8
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC---CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP---QVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~---~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
....++||...++....-|-..-+.+.+.|. ++||--...++.-..+.|. .++++.++++-..|+.|-..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n------ 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN------ 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec------
Confidence 3446788988888888888878899999988 8899433255554444433 49999999999999999888
Q ss_pred CCCccEEEEEEcc----CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 281 DANRVVINIFDVR----TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 281 ~~~~~~I~iwd~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
|++.-+.+. ....++....|...+. .+-|+- ....+++.+ |..+.---.+.+..+..
T Consensus 90 ----gtvtefs~sedfnkm~~~r~~~~h~~~v~-------------~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~ 151 (404)
T KOG1409|consen 90 ----GTVTEFALSEDFNKMTFLKDYLAHQARVS-------------AIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGG 151 (404)
T ss_pred ----ceEEEEEhhhhhhhcchhhhhhhhhccee-------------eEEecC-CceeEEEeccccceEEEeeccCCcccc
Confidence 888877653 3344566666655542 455665 567777777 65554333334433322
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
..+.. +..+..+.+.+ .-.|-..+.+.+..+.......+.....+......+.|.+....|.++..+..
T Consensus 152 Y~~~~-------~~t~~~~d~~~-~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~--- 220 (404)
T KOG1409|consen 152 YNFET-------PASALQFDALY-AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS--- 220 (404)
T ss_pred eEeec-------cCCCCceeeEE-EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc---
Confidence 21111 11111111110 00021233333444444445566666767777788899999999999998877
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc-C------ceeEEE
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA-G------RVSKLT 508 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~-~------~~~~~~ 508 (712)
+.+|++... +....++.+|...|..+...+--+.+.++..|+ .|.+|+++..... . .|..-.
T Consensus 221 ------vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg---~i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 221 ------VIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLISCGEDG---GIVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred ------eEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeeeccCCC---eEEEEeccceeecCccccccchhhhhC
Confidence 788888753 333467778999999999888889999999999 8999999643210 0 000000
Q ss_pred --------------E--eCCCce----eEE--EEccCCCeEEEEeccCCCceEEEEECC-------cceeeeeccc--cc
Q 005140 509 --------------T--LKGKQA----NAL--FWSPSGRFIVLAGLKGFNGQLEFYNVD-------ELETMATAEH--FM 557 (712)
Q Consensus 509 --------------~--~~~~~v----~~l--~~spdg~~l~~~~~~~~dg~v~iwd~~-------~~~~~~~~~~--~~ 557 (712)
. +..|.+ +.+ .-+.+.....+-+. .-.+++-|.- +...++..|. ..
T Consensus 290 qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~---e~~vR~~~~c~~~i~~~~~t~LA~phei~tg 366 (404)
T KOG1409|consen 290 QPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF---EFSVRVCDSCYPTIKDEERTPLAIPHEIKTG 366 (404)
T ss_pred chHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc---eeEEEEecccchhhhcCCCCccccccccccc
Confidence 0 000000 001 11111111112222 2344444322 1222444443 57
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
|+.+.+.-+-..|+|++. |..|+|||+.
T Consensus 367 ItamhlqetlglLvTsG~-----~Rvi~iwd~~ 394 (404)
T KOG1409|consen 367 ITAMHLQETLGLLVTSGT-----DRVIKIWDVR 394 (404)
T ss_pred eeEEEhhhhccceeecCC-----ceEEEEEech
Confidence 899999999889999999 9999999986
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-05 Score=77.17 Aligned_cols=283 Identities=16% Similarity=0.130 Sum_probs=132.6
Q ss_pred ceEEEcCCCcEEEEEec-Cc---eEEeecccCcceeeeecC--CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHR-QG---AAVWGGANTFNRLMRYAH--PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~-~~---i~iw~~~~~~~~~~~~~~--~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
+.-+|.+||+.|++++. ++ +.+.|+. +++...--.. .......+||+++.|+..... ..|+-.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~-t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~----------~~l~~v 107 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLA-TGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG----------RSLRRV 107 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETT-T-EEEE---SS-B-TTT-EE-TTSSEEEEEETT----------TEEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcc-cCEEEECccCCCCCccceEEecCCCeEEEEECC----------CeEEEE
Confidence 34578999988777664 44 5566777 4443322222 234567888999998876555 578899
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec--CCCCCEEEEec----C-------------------CeEEEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG--GGKDKYFAKLG----K-------------------NMISVY 345 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~dg~~la~~~----d-------------------~~i~iw 345 (712)
|+.+++....+..+..-.. ...|+ . |+..++... + ..|.-.
T Consensus 108 dL~T~e~~~vy~~p~~~~g-------------~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKG-------------YGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp ETTT--EEEEEE--TTEEE-------------EEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred ECCcCcEEEEEECCccccc-------------ccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 9988876555554443321 23553 4 566665442 1 234445
Q ss_pred EcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCE
Q 005140 346 ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
++.+|+..... ....-+..+.|||....++.++-+.....-..+||.++..... .+.... .......=.|.|+|..
T Consensus 174 dl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 174 DLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGST 251 (386)
T ss_dssp ETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-
T ss_pred ECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCE
Confidence 55655432111 1122367899999988887777664223335699999976543 222222 1112222369999998
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceEEEEEeeCCCEEEEEEcCCC-------------CCe
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRFAVIHGDSP-------------RPD 489 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~-------------~~~ 489 (712)
|.+-..... + ....+..+......... ..+ .....+--++||++|+-=+.|.+ .+-
T Consensus 252 i~y~~~~~~--~----~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 252 IWYDSYTPG--G----QDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EEEEEEETT--T------EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred EEEEeecCC--C----CceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 877443111 0 01233333332222111 222 23445666789988765554422 124
Q ss_pred EEEEEeecccccCceeEEEE-------eCCC-ce--eEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 490 ISFYSMRTAQHAGRVSKLTT-------LKGK-QA--NALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~-------~~~~-~v--~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
|+++++..+... .+.. +.++ .+ ..+.|||||++++..+. +.|...||
T Consensus 322 i~~~~~~~~~~~----~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd--~~G~~~vY 378 (386)
T PF14583_consen 322 IYLFDVEAGRFR----KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD--MEGPPAVY 378 (386)
T ss_dssp EEEEETTTTEEE----EEEE-------BTTBSSTT----EE-TTSSEEEEEE---TTSS-EEE
T ss_pred EEEeccccCcee----eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC--CCCCccEE
Confidence 556666543321 1111 1111 12 45899999999998875 25555555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-05 Score=87.20 Aligned_cols=273 Identities=12% Similarity=0.180 Sum_probs=140.6
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcc-eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
..|.++.|--++.-|+.+...| |.+.|.. +.. .+...-..+|.+++||||++.++..+.. +++.+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~e-t~~~eivg~vd~GI~aaswS~Dee~l~liT~~----------~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPE-TLELEIVGNVDNGISAASWSPDEELLALITGR----------QTLLFMT 137 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccc-ccceeeeeeccCceEEEeecCCCcEEEEEeCC----------cEEEEEe
Confidence 5678889999998888888888 7777888 443 3333345679999999999999988887 6665443
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCc-eecccccccccCeeeEEECC
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESF-TLIDKKSLKVENVMDFSWSP 370 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp 370 (712)
.+-.++..-+.+..... .+ ....+-|-. ....| .++.|.....+.... +.+... -....=..++|--
T Consensus 138 -~~f~~i~E~~L~~d~~~---~s-----k~v~VGwGr-keTqf-rgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRg 205 (1265)
T KOG1920|consen 138 -KDFEPIAEKPLDADDER---KS-----KFVNVGWGR-KETQF-RGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRG 205 (1265)
T ss_pred -ccccchhcccccccccc---cc-----ccceecccc-cceee-ecchhhhcccccccccccccch-hhccCCceEEEcc
Confidence 33333332222111100 00 000233333 22211 111111111111000 000000 0111235689999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
||.++|+..-.. ..+.-+|.+|+... ........ ......+.|-|.|..+++........ .+.+|.-+.
T Consensus 206 Dg~~fAVs~~~~--~~~~RkirV~drEg~Lns~se~~--~~l~~~LsWkPsgs~iA~iq~~~sd~------~IvffErNG 275 (1265)
T KOG1920|consen 206 DGEYFAVSFVES--ETGTRKIRVYDREGALNSTSEPV--EGLQHSLSWKPSGSLIAAIQCKTSDS------DIVFFERNG 275 (1265)
T ss_pred CCcEEEEEEEec--cCCceeEEEecccchhhcccCcc--cccccceeecCCCCeEeeeeecCCCC------cEEEEecCC
Confidence 999999855433 33333444554331 01111111 11123468999999999876654421 245554332
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
-....-.+..+.....|..++|+.++..||+.........|++|-+.+- .+-+-..+.-....-+.|+|-
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny----hWYLKq~l~~~~~~~~~W~p~ 345 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY----HWYLKQELQFSQKALLMWDPV 345 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe----EEEEEEEEeccccccccccCC
Confidence 1111111112222334899999999999999666544447999998432 222222222222223788883
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.7e-05 Score=74.88 Aligned_cols=311 Identities=12% Similarity=0.114 Sum_probs=142.2
Q ss_pred ecccCcceeeeecCCCe-------eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCC
Q 005140 240 GGANTFNRLMRYAHPQV-------KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 312 (712)
Q Consensus 240 ~~~~~~~~~~~~~~~~v-------~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~ 312 (712)
|.. ++.++.++....+ +.-+|.+||+.|+.++.- .+...+.+.|+.+++..+...+.....
T Consensus 16 D~~-TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~~---- 83 (386)
T PF14583_consen 16 DPD-TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDNT---- 83 (386)
T ss_dssp -TT-T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-T----
T ss_pred CCC-CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCCc----
Confidence 555 7777777754443 234789999988887763 122678999999888665544432211
Q ss_pred CCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEE--CCCCCeEEEEeecCC------
Q 005140 313 TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW--SPTDPIISLFVPELG------ 383 (712)
Q Consensus 313 ~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~la~~~~~~~------ 383 (712)
. ...+++ +++.++... ...|.-.|+.+.+..........-+....| +.++..++.......
T Consensus 84 --------~-g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 84 --------F-GGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp --------T-T-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred --------c-ceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence 0 256788 888877664 678888888877643222222222333444 445666553321110
Q ss_pred ---------CCCCCeEEEEEecCCccceeeeeeeeecc--eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 384 ---------GGNQPARVSLVQIPSKEELRQKNLFSVSD--CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 384 ---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
...-..+|..+++.+++.- .++.... -.+.++|....+++-...+.- .. -..++|-++..+.
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~---~v~~~~~wlgH~~fsP~dp~li~fCHEGpw---~~-Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGERK---VVFEDTDWLGHVQFSPTDPTLIMFCHEGPW---DL-VDQRIWTINTDGS 226 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--EE---EEEEESS-EEEEEEETTEEEEEEEEE-S-T---TT-SS-SEEEEETTS-
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCcee---EEEecCccccCcccCCCCCCEEEEeccCCc---ce-eceEEEEEEcCCC
Confidence 0012345666666554421 1111111 234567765544444333220 00 1136899887765
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCC-CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEE
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSP-RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLA 530 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~ 530 (712)
....+.-......+..=-|.|||..|...+. .+. ...|.-+++.++.. ..+...+ ....+--|+||++++--
T Consensus 227 ~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~----~~~~~~p--~~~H~~ss~Dg~L~vGD 300 (386)
T PF14583_consen 227 NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER----RRLMEMP--WCSHFMSSPDGKLFVGD 300 (386)
T ss_dssp --EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E----EEEEEE---SEEEEEE-TTSSEEEEE
T ss_pred cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc----eEEEeCC--ceeeeEEcCCCCEEEec
Confidence 5433321111334555689999998888655 221 11344555554432 1333332 45678888999888764
Q ss_pred eccC-------------CCceEEEEECCcceeeeec-c---------cc--ceeeEEECCCCCEEEEEEccceeccccEE
Q 005140 531 GLKG-------------FNGQLEFYNVDELETMATA-E---------HF--MATDVEWDPTGRYVATAVTSVHEMENGFN 585 (712)
Q Consensus 531 ~~~~-------------~dg~v~iwd~~~~~~~~~~-~---------~~--~v~~~~~spdg~~l~t~s~~~~~~d~~v~ 585 (712)
+.+. .+--|+++++..+...... | +. .-..+.|||||++|+..|.. .|...
T Consensus 301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~----~G~~~ 376 (386)
T PF14583_consen 301 GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM----EGPPA 376 (386)
T ss_dssp E-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T----TSS-E
T ss_pred CCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC----CCCcc
Confidence 4311 0125677888765543211 1 11 12468999999999999874 66666
Q ss_pred EEEe
Q 005140 586 IWSF 589 (712)
Q Consensus 586 iw~~ 589 (712)
||-+
T Consensus 377 vY~v 380 (386)
T PF14583_consen 377 VYLV 380 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-06 Score=81.36 Aligned_cols=275 Identities=15% Similarity=0.276 Sum_probs=158.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-----ceeeeccCCCccccc----CCCCCcCCCCcCeEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-----KVMRDFKGSADEFAV----GGTGGVAGVSWPVFR 325 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 325 (712)
.|+++.|...|.||++|... |.|.+|.-... +.+..|++|...... .....+. .+.
T Consensus 28 ~ItaVefd~tg~YlatGDkg----------GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin-----~I~ 92 (460)
T COG5170 28 KITAVEFDETGLYLATGDKG----------GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKIN-----AIE 92 (460)
T ss_pred eeeEEEeccccceEeecCCC----------ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhh-----hee
Confidence 48999999999999999988 89999974322 224456666543210 0111222 456
Q ss_pred ecCCCC---CEEEEecCCeEEEEEcCCce--eccccc----ccc--cC-e------eeEEECCCCCeEEEEeecCCCCCC
Q 005140 326 WGGGKD---KYFAKLGKNMISVYETESFT--LIDKKS----LKV--EN-V------MDFSWSPTDPIISLFVPELGGGNQ 387 (712)
Q Consensus 326 ~s~~dg---~~la~~~d~~i~iwd~~~~~--~~~~~~----~~~--~~-v------~~~~~sp~~~~la~~~~~~~~~~~ 387 (712)
|-. ++ .+|+++.|.+|++|.+.... ++..-. +|. ++ + .--..+....+++. .|
T Consensus 93 w~~-~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-~p------- 163 (460)
T COG5170 93 WFD-DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-KP------- 163 (460)
T ss_pred eec-CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe-cc-------
Confidence 655 43 36777779999999886432 111110 010 00 0 01111222223332 00
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC----
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN---- 463 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~---- 463 (712)
.+|+ .+.+....-++.++.+...++++.+- .+.+|.+.........+.+.+|+
T Consensus 164 -~rvy------------aNaH~yhiNSiS~NsD~et~lSaDdL----------rINLWnl~i~D~sFnIVDiKP~nmeeL 220 (460)
T COG5170 164 -CRVY------------ANAHPYHINSISFNSDKETLLSADDL----------RINLWNLEIIDGSFNIVDIKPHNMEEL 220 (460)
T ss_pred -ceec------------cccceeEeeeeeecCchheeeeccce----------eeeeccccccCCceEEEeccCccHHHH
Confidence 0110 01122222334566666665543321 25788887666666666665655
Q ss_pred -CceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeeccccc-CceeEEE-EeC----------CCceeEEEEccCCCeEEE
Q 005140 464 -DKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHA-GRVSKLT-TLK----------GKQANALFWSPSGRFIVL 529 (712)
Q Consensus 464 -~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~-~~~~~~~-~~~----------~~~v~~l~~spdg~~l~~ 529 (712)
.-|++..|+|. ...|...+..| .|++-|++....- ..+++.. .+. -..|..+.|+|+|+++++
T Consensus 221 teVItSaeFhp~~cn~fmYSsSkG---~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 221 TEVITSAEFHPEMCNVFMYSSSKG---EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred HHHHhhcccCHhHcceEEEecCCC---cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 35888899994 56666667777 8999999743210 0011110 010 114678999999999999
Q ss_pred EeccCCCceEEEEECCcc-eeeeec--------------cccce---eeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 530 AGLKGFNGQLEFYNVDEL-ETMATA--------------EHFMA---TDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~-~~~~~~--------------~~~~v---~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
-.. -+|+|||.+.. ..+.+. ....| ..+.||.|.+.+++|+. .+.+-||-
T Consensus 298 Rdy----ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy-----~NNfgiyp 365 (460)
T COG5170 298 RDY----LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY-----SNNFGIYP 365 (460)
T ss_pred ecc----ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc-----ccceeeec
Confidence 875 78999998732 222221 12223 35889999999999998 67777765
|
|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=103.38 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT--NGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~--~~~~~~~ 136 (712)
+++|||+|||. +..+++|+++|++||.|.. +.|+. +||||||+|.+.++|.+|++.+ |+..+.+
T Consensus 2 s~vv~V~nLp~------~~te~~L~~~f~~fG~V~~--v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g 67 (481)
T TIGR01649 2 SPVVHVRNLPQ------DVVEADLVEALIPFGPVSY--VMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRG 67 (481)
T ss_pred ccEEEEcCCCC------CCCHHHHHHHHHhcCCeeE--EEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcC
Confidence 57999999998 5559999999999999999 98885 3589999999999999999974 7788888
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 68 ~-~l~v~~s~ 76 (481)
T TIGR01649 68 Q-PAFFNYST 76 (481)
T ss_pred e-EEEEEecC
Confidence 5 77776543
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=102.48 Aligned_cols=71 Identities=24% Similarity=0.394 Sum_probs=62.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhcc--CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI--GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~--g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+|||+|||. ...++.|+++|++| |.|.+ |.++ +|||||+|.+.++|.+|++.|||..|++
T Consensus 233 ~k~LfVgNL~~------~~tee~L~~~F~~f~~G~I~r--V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 233 VKILYVRNLMT------TTTEEIIEKSFSEFKPGKVER--VKKI--------RDYAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred ccEEEEeCCCC------CCCHHHHHHHHHhcCCCceEE--EEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 46899999997 55589999999999 99998 7654 4699999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 297 r-~I~V~~Ak 305 (578)
T TIGR01648 297 S-EIEVTLAK 305 (578)
T ss_pred E-EEEEEEcc
Confidence 5 88887653
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-05 Score=88.32 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=90.1
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccC--------------CCcccceEEEcCCCcEEEEEecCc--eEE
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKR--------------SYWTESFVQWSPLGTYLATVHRQG--AAV 238 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--------------~~~~v~~v~~Spdg~~lat~~~~~--i~i 238 (712)
...++.+...|+.-++++.+..++.. +..+..+.. +-..-..++++++|..|+.+...+ |++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35555555677777777777777652 222211111 112346799999988766665433 778
Q ss_pred eecccCcceeeeec-------------------CCCeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 239 WGGANTFNRLMRYA-------------------HPQVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 239 w~~~~~~~~~~~~~-------------------~~~v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
+|.. +.. +.++. ......++|+|+ +..+++.+.+ +.|++||..++..
T Consensus 651 id~~-~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~----------~~I~v~d~~~g~v- 717 (1057)
T PLN02919 651 IDFV-NET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ----------HQIWEYNISDGVT- 717 (1057)
T ss_pred EecC-CCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC----------CeEEEEECCCCeE-
Confidence 8876 332 22210 112467999995 5555565556 7899999877653
Q ss_pred eeccCCCccccc-CCCCCcCCCCcC-eEEecCCCCCEEEEec--CCeEEEEEcCCce
Q 005140 299 RDFKGSADEFAV-GGTGGVAGVSWP-VFRWGGGKDKYFAKLG--KNMISVYETESFT 351 (712)
Q Consensus 299 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~s~~dg~~la~~~--d~~i~iwd~~~~~ 351 (712)
..+.+....... +.......+..| .++++| ++++|+.+. ++.|++||+.++.
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCc
Confidence 333222110000 000000111111 488999 998554444 8999999988654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=105.74 Aligned_cols=212 Identities=15% Similarity=0.211 Sum_probs=151.2
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
++...-|....+...- ..+..+|.++.-+|...+.++ |+.++.+++|-|..+..-.. .....+....++.|+
T Consensus 2189 ~~~~~tq~~~~~~~~~--k~~v~~v~r~~sHp~~~~Ylt-----gs~dgsv~~~~w~~~~~v~~-~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASVMI--KHPVENVRRMTSHPSDPYYLT-----GSQDGSVRMFEWGHGQQVVC-FRTAGNSRVTRSRFN 2260 (2439)
T ss_pred CccccceecccceeEe--ecccCceeeecCCCCCceEEe-----cCCCceEEEEeccCCCeEEE-eeccCcchhhhhhhc
Confidence 4555555544333321 235667899999999988888 88999999988876543322 222233555667889
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
.+|..+.++..++. +.+|.+. |.....-..|+...+++.|-. ..+++++......++.+||..-.
T Consensus 2261 ~qGnk~~i~d~dg~---------l~l~q~~----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGD---------LSLWQAS----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred ccCCceeeeccCCc---------eeecccC----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 99998888888776 7788876 223345567888888888865 55666654333348999997432
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccce
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
. ....+++.+.+.++++++.|..+.|++|+. +|.|++||++..+++.+... |. .-.++++++.
T Consensus 2326 ~---~~s~v~~~H~~gaT~l~~~P~~qllisggr---~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss--- 2388 (2439)
T KOG1064|consen 2326 P---MNSLVHTCHDGGATVLAYAPKHQLLISGGR---KGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSS--- 2388 (2439)
T ss_pred c---ccceeeeecCCCceEEEEcCcceEEEecCC---cCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCc---
Confidence 2 123566666778999999999999999998 99999999997776654332 45 5678999999
Q ss_pred eccccEEEEEecCc
Q 005140 579 EMENGFNIWSFNGK 592 (712)
Q Consensus 579 ~~d~~v~iw~~~g~ 592 (712)
.|.++||++++-
T Consensus 2389 --~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2389 --EGNIKIWRLSEF 2400 (2439)
T ss_pred --ccceEEEEcccc
Confidence 899999999854
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-05 Score=71.40 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=48.4
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.++.+++|+.||..-.. .|.|=..++. ..+.....+.+.. =.|.-++||| |+.+||
T Consensus 2 ~~~~~~~Gk~lAi~qd~-----------~iEiRsa~Ddf~si~~kcqVpkD~~----------PQWRkl~WSp-D~tlLa 59 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ-----------CIEIRSAKDDFSSIIGKCQVPKDPN----------PQWRKLAWSP-DCTLLA 59 (282)
T ss_pred ceeecCCCcEEEEEecc-----------EEEEEeccCCchheeEEEecCCCCC----------chheEEEECC-CCcEEE
Confidence 36778999998877655 4555433221 2233333333332 1287899999 999999
Q ss_pred Eec-CCeEEEEEcCCce
Q 005140 336 KLG-KNMISVYETESFT 351 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~ 351 (712)
.+. .|+|++||+....
T Consensus 60 ~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 60 YAESTGTIRVFDLMGSE 76 (282)
T ss_pred EEcCCCeEEEEecccce
Confidence 998 9999999987533
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-05 Score=83.45 Aligned_cols=246 Identities=8% Similarity=0.066 Sum_probs=133.0
Q ss_pred ecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 326 WGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 326 ~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
++| ||+.+...+ .+.+.+.|..+++...+.... .....++++|+|+++.+.+... .. ...+...+......+.
T Consensus 200 lpn-DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNs--E~-G~tl~em~a~e~d~~v 274 (635)
T PRK02888 200 LPN-DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNS--EE-GVTLAEMMAAERDWVV 274 (635)
T ss_pred cCC-CCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCc--cc-CcceeeeccccCceEE
Confidence 345 666554333 567777787777665443221 2356778999999988732110 11 1122222222111111
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec----CCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE----RDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
..+.... -.+.++|++..+. .+. +.+.+... .......+.. ....+.+.+||||++++
T Consensus 275 vfni~~i----ea~vkdGK~~~V~--gn~---------V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkyly 336 (635)
T PRK02888 275 VFNIARI----EEAVKAGKFKTIG--GSK---------VPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFI 336 (635)
T ss_pred EEchHHH----HHhhhCCCEEEEC--CCE---------EEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEE
Confidence 1110000 0235677766652 111 34444443 1112222333 56778899999999999
Q ss_pred EEEcCCCCCeEEEEEeecccc------cCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc------
Q 005140 480 VIHGDSPRPDISFYSMRTAQH------AGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE------ 546 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~------~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~------ 546 (712)
+++.-.+ +|.++|+.+... ..+-..+.... +..-...+|.++|....+... |.+|..||+..
T Consensus 337 VanklS~--tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~---dsqv~kwn~~~a~~~~~ 411 (635)
T PRK02888 337 ANGKLSP--TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL---DSQIVKWNIEAAIRAYK 411 (635)
T ss_pred EeCCCCC--cEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee---cceeEEEehHHHHHHhc
Confidence 9887442 899999976331 00111222322 223456789999986666666 89999999885
Q ss_pred ----ceeeeec-cccceeeEE------ECCCCCEEEEEEcc---ce-----eccccEEEEEecCceeeeecc
Q 005140 547 ----LETMATA-EHFMATDVE------WDPTGRYVATAVTS---VH-----EMENGFNIWSFNGKLLYRTLK 599 (712)
Q Consensus 547 ----~~~~~~~-~~~~v~~~~------~spdg~~l~t~s~~---~~-----~~d~~v~iw~~~g~~~~~~~~ 599 (712)
..++... -+..+-.+. -.|||+||++...- +. --...-++.|++|..+.-.+.
T Consensus 412 g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d 483 (635)
T PRK02888 412 GEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD 483 (635)
T ss_pred cccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec
Confidence 2233321 112222233 37999999988652 10 002345688888877665543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00018 Score=70.67 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=131.3
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+.|.+ ....|.... .+.|..|+..++.... ...+....+.+. +++.++++ ..... .+++..+.
T Consensus 4 gp~~d~-~~g~l~~~D~~~~~i~~~~~~~~~~~~---~~~~~~~G~~~~~~~g~l~v~-------~~~~~--~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDP-RDGRLYWVDIPGGRIYRVDPDTGEVEV---IDLPGPNGMAFDRPDGRLYVA-------DSGGI--AVVDPDTG 70 (246)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEE---EESSSEEEEEEECTTSEEEEE-------ETTCE--EEEETTTT
T ss_pred ceEEEC-CCCEEEEEEcCCCEEEEEECCCCeEEE---EecCCCceEEEEccCCEEEEE-------EcCce--EEEecCCC
Confidence 467886 555554444 8999999988775432 233346777777 67666664 22222 33365554
Q ss_pred cceeeeee-----eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 400 EELRQKNL-----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 400 ~~~~~~~~-----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
+....... .......+.+.++|+..++........... .-.+|++...+.. ... . ..-...+.++|+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~---~g~v~~~~~~~~~-~~~-~-~~~~~pNGi~~s~d 144 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID---PGSVYRIDPDGKV-TVV-A-DGLGFPNGIAFSPD 144 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG---SEEEEEEETTSEE-EEE-E-EEESSEEEEEEETT
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc---ccceEEECCCCeE-EEE-e-cCcccccceEECCc
Confidence 32211111 112233457899999555544332211100 0468888766322 111 1 12355778999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccc-cCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQH-AGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
++.|+++.... ..|..|++..... ......+..+... ....+++..+|+..++... .+.|.+++.+ ++++.
T Consensus 145 g~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 145 GKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---GGRIVVFDPD-GKLLR 218 (246)
T ss_dssp SSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---TTEEEEEETT-SCEEE
T ss_pred chheeeccccc--ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---CCEEEEECCC-ccEEE
Confidence 99888766533 2788888864332 1112234444443 3678999999987776655 7999999998 66665
Q ss_pred e--ccccceeeEEE-CCCCCEEEEEE
Q 005140 552 T--AEHFMATDVEW-DPTGRYVATAV 574 (712)
Q Consensus 552 ~--~~~~~v~~~~~-spdg~~l~t~s 574 (712)
. .....+++++| -++.+.|...+
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 4 33458899999 47767665544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=81.50 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=67.1
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+..+||+||.. +.-|..|.++|+.||.+... =.++.|+.||+++|||||.|++.+.+.+|+..+||..+..
T Consensus 94 ~vganlfvgNLd~------~vDe~~L~dtFsafG~l~~~-P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n 166 (203)
T KOG0131|consen 94 DVGANLFVGNLDP------EVDEKLLYDTFSAFGVLISP-PKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN 166 (203)
T ss_pred cccccccccccCc------chhHHHHHHHHHhccccccC-CcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC
Confidence 3458999999986 44589999999999987541 2577788899999999999999999999999999998887
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
+ .++|.-
T Consensus 167 r-~itv~y 173 (203)
T KOG0131|consen 167 R-PITVSY 173 (203)
T ss_pred C-ceEEEE
Confidence 6 555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-05 Score=86.81 Aligned_cols=250 Identities=15% Similarity=0.261 Sum_probs=134.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|.++.|..++..|+.+... |.|.+-|..+....-.-....+.. +.+||| |++.+
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~----------G~iilvd~et~~~eivg~vd~GI~--------------aaswS~-Dee~l 124 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL----------GDIILVDPETLELEIVGNVDNGIS--------------AASWSP-DEELL 124 (1265)
T ss_pred ceEEEEEecccceEEEEecC----------CcEEEEcccccceeeeeeccCceE--------------EEeecC-CCcEE
Confidence 48999999999888888888 788888876665322212222222 789999 99999
Q ss_pred EEecCCeEEEEEcCCceeccccccccc-----CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-cceeeeeee
Q 005140 335 AKLGKNMISVYETESFTLIDKKSLKVE-----NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK-EELRQKNLF 408 (712)
Q Consensus 335 a~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 408 (712)
+..+.....+....++.++..+.++.+ ..-.+-|-...+.+- |+.+ +.-..+.... +.+... -.
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr------gs~g---r~~~~~~~~~ek~~~~~-~~ 194 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR------GSEG---RQAARQKIEKEKALEQI-EQ 194 (1265)
T ss_pred EEEeCCcEEEEEeccccchhccccccccccccccceecccccceeee------cchh---hhcccccccccccccch-hh
Confidence 988854444555555555544433221 122223322221221 0010 0000000000 000000 01
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
......+.|.-||.++++..-..... .-.+.+|+-... ... ..- ...+--.+++|-|.|..+++........
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~----~RkirV~drEg~-Lns--~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETG----TRKIRVYDREGA-LNS--TSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCC----ceeEEEecccch-hhc--ccC-cccccccceeecCCCCeEeeeeecCCCC
Confidence 12234578999999999844321100 012677765411 000 000 1134456799999999999987765555
Q ss_pred eEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
.|.+|..+.-.. +.+..-.......+..++|+.++..|++.........|++|-+.+..
T Consensus 267 ~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 267 DIVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cEEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 799998643211 11111111112248999999999999984322215569999988643
|
|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-07 Score=101.82 Aligned_cols=85 Identities=21% Similarity=0.414 Sum_probs=69.9
Q ss_pred CCEEEECCCCCC----CchhhhhhHHHHHHHhhccCeeeeceEEEeccC---CCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 59 GNIIVVDNLPVV----PKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP---ETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 59 ~~~~~v~~lp~~----~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~---~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
..+|++.|++.. .++-++.+.++|+++|++||.|.. |.||.+. .++..+|||||+|.+.++|.+|+..|||
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~--v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLIN--IVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeE--EEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 568899999743 333455667889999999999999 9999763 4567789999999999999999999999
Q ss_pred CccCCceEEEEEeec
Q 005140 132 YKLDRAHIFAVNMFD 146 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~ 146 (712)
..|+++ .+.+..+.
T Consensus 487 r~~~gr-~v~~~~~~ 500 (509)
T TIGR01642 487 RKFNDR-VVVAAFYG 500 (509)
T ss_pred CEECCe-EEEEEEeC
Confidence 999986 66666544
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00013 Score=71.61 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=129.8
Q ss_pred eEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec-CCCCCEE
Q 005140 257 KLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG-GGKDKYF 334 (712)
Q Consensus 257 ~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~dg~~l 334 (712)
.++.|.+ +|.++++-... +.|..|+..++.... +..+. .. .+.+. + ++.++
T Consensus 3 Egp~~d~~~g~l~~~D~~~----------~~i~~~~~~~~~~~~-~~~~~-~~--------------G~~~~~~-~g~l~ 55 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPG----------GRIYRVDPDTGEVEV-IDLPG-PN--------------GMAFDRP-DGRLY 55 (246)
T ss_dssp EEEEEETTTTEEEEEETTT----------TEEEEEETTTTEEEE-EESSS-EE--------------EEEEECT-TSEEE
T ss_pred cceEEECCCCEEEEEEcCC----------CEEEEEECCCCeEEE-EecCC-Cc--------------eEEEEcc-CCEEE
Confidence 3678998 55555555455 789999987765432 32222 22 45666 6 66665
Q ss_pred EEecCCeEEEEEcCCceecccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCC--eEEEEEecCCccceeeeee
Q 005140 335 AKLGKNMISVYETESFTLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQP--ARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 335 a~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~ 407 (712)
++.. +.+.++|..+++...-... .....+++++.|+|++.++-.... ..... +.|+.++.. .+......
T Consensus 56 v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~-~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 56 VADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGG-GASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCB-CTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCC-ccccccccceEEECCC-CeEEEEec-
Confidence 5554 5556668887754322222 233478999999999665422111 11112 788888877 32111111
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCccee----EEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIE----VLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.-...-.+.|+|+|+.|++...... .+..|++...+.... ...+....+..-.+++..+|+.+++...
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNG--------RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTT--------EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred CcccccceEECCcchheeecccccc--------eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence 1112235689999998887554432 144455544333111 1223222334778999999988887776
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE-ccCCCeEEEEe
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW-SPSGRFIVLAG 531 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~-spdg~~l~~~~ 531 (712)
.+ .|.+++.+ +. ......++...+++++| -|+.+.|++.+
T Consensus 204 ~~---~I~~~~p~-G~----~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 204 GG---RIVVFDPD-GK----LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT---EEEEEETT-SC----EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CC---EEEEECCC-cc----EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 66 89999875 32 12333344457889999 47777776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.7e-08 Score=88.68 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=61.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.++||+|||. +..+..|+.+|++||+|.+ |.|.++ ||||-.++...|..||.+|||+.|++. .
T Consensus 3 ~KLFIGNLp~------~~~~~elr~lFe~ygkVlE--CDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~-n 65 (346)
T KOG0109|consen 3 VKLFIGNLPR------EATEQELRSLFEQYGKVLE--CDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGV-N 65 (346)
T ss_pred cchhccCCCc------ccchHHHHHHHHhhCceEe--eeeecc--------cceEEeecccccHHHHhhcccceecce-E
Confidence 3789999997 5558899999999999999 988765 899999999999999999999999985 6
Q ss_pred EEEEeecc
Q 005140 140 FAVNMFDD 147 (712)
Q Consensus 140 l~v~~~~~ 147 (712)
+.|..-+.
T Consensus 66 InVeaSks 73 (346)
T KOG0109|consen 66 INVEASKS 73 (346)
T ss_pred EEEEeccc
Confidence 66655443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=7e-05 Score=73.71 Aligned_cols=287 Identities=13% Similarity=0.133 Sum_probs=146.5
Q ss_pred ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGT 313 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~ 313 (712)
.+.|+|.+ +++.+..+...-...+..||||+.+++++.--.....+.+.-.|.+||..+-.....+..+.. ... .
T Consensus 18 rv~viD~d-~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~---~ 93 (342)
T PF06433_consen 18 RVYVIDAD-SGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ---V 93 (342)
T ss_dssp EEEEEETT-TTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----B
T ss_pred eEEEEECC-CCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe---e
Confidence 37788988 777777766555666889999999887542200001111124799999988877765544432 110 0
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
.. ..+ .+++|. ||+++.... ..+|.|.|+...+.+.. +..++...+-=++...+.+. | +|+...
T Consensus 94 ~~---~~~-~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~e--i~~PGC~~iyP~~~~~F~~l-----C-~DGsl~ 160 (342)
T PF06433_consen 94 VP---YKN-MFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGE--IDTPGCWLIYPSGNRGFSML-----C-GDGSLL 160 (342)
T ss_dssp S-----GG-GEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEE--EEGTSEEEEEEEETTEEEEE-----E-TTSCEE
T ss_pred cc---ccc-ceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeee--ecCCCEEEEEecCCCceEEE-----e-cCCceE
Confidence 00 012 478999 999888776 78899999998877642 34444333322222233332 1 455444
Q ss_pred EEEEecCCccceeeeeeeeecce----eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecC----
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDC----KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDN---- 461 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~---- 461 (712)
-..++-.-....+...+|....- ...+...+..+++.+-.+. +.-.++...... .....+..
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~---------v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN---------VYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE---------EEEEEETTSSEEEEEEEESS-HHHH
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE---------EEEEeccCCcccccCcccccCcccc
Confidence 33443222211111122221111 1123333444443333322 333333322211 11111100
Q ss_pred ----CCCceEEEEEeeCCCEEEEEEcCC-------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEE
Q 005140 462 ----KNDKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVL 529 (712)
Q Consensus 462 ----h~~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~ 529 (712)
..+.-.-+++++..++|.+....+ +...|.+||+.+++ .+..++ .+++.+++.|.+.+=++.
T Consensus 232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k------rv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK------RVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE------EEEEEEEEEEESEEEEESSSS-EEE
T ss_pred ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe------EEEEEeCCCccceEEEccCCCcEEE
Confidence 011223367776555555443211 22357777776654 566665 457889999999885544
Q ss_pred EeccCCCceEEEEECCcceeeeecc
Q 005140 530 AGLKGFNGQLEFYNVDELETMATAE 554 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~~~~~~~~ 554 (712)
+.... ++.|.+||..+++.+.+..
T Consensus 306 ~~~~~-~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 306 ALSAG-DGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEETT-TTEEEEEETTT--EEEEE-
T ss_pred EEcCC-CCeEEEEeCcCCcEEeehh
Confidence 32211 7899999999999887643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-05 Score=79.15 Aligned_cols=287 Identities=11% Similarity=0.051 Sum_probs=148.8
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCCC-e-eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-V-KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v-~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
|..|++++.++ +..+|.. +++.+-++.... + ..+. .++..++.++.+ +.+..+|..+|+.+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~----------g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAE-TGKRLWRVDLDERLSGGVG--ADGGLVFVGTEK----------GEVIALDAEDGKELWRA 131 (377)
T ss_pred CCEEEEECCCCeEEEEEcc-CCcEeeeecCCCCcccceE--EcCCEEEEEcCC----------CEEEEEECCCCcEeeee
Confidence 55666776666 7788887 666665544332 1 2222 256778888888 89999999999988766
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCee-----eEEECCCCCeEE
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVM-----DFSWSPTDPIIS 376 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~la 376 (712)
....... .. ... . ++..++...++.|..||..+++.+.........+. ..... +..++
T Consensus 132 ~~~~~~~-----------~~--p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~ 194 (377)
T TIGR03300 132 KLSSEVL-----------SP--PLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVL 194 (377)
T ss_pred ccCceee-----------cC--CEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEE
Confidence 5432211 01 112 2 44555544599999999999887665433222110 11111 22333
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeee-----------cceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----------SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
+ +.. ...+..++..+.+.+-....... ....... .+..+++...++. +..+
T Consensus 195 ~-----~~~--~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~---------l~a~ 256 (377)
T TIGR03300 195 V-----GFA--GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR---------VAAL 256 (377)
T ss_pred E-----ECC--CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE---------EEEE
Confidence 3 222 23455666555443222111000 0000011 2345555444433 3333
Q ss_pred EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEcc
Q 005140 446 RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSP 522 (712)
Q Consensus 446 ~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~sp 522 (712)
+... +...-.... . ....+ ...+.++++++.++ .|..+|..++.. +... .......+..
T Consensus 257 d~~t-G~~~W~~~~---~-~~~~p--~~~~~~vyv~~~~G---~l~~~d~~tG~~------~W~~~~~~~~~~ssp~i-- 318 (377)
T TIGR03300 257 DLRS-GRVLWKRDA---S-SYQGP--AVDDNRLYVTDADG---VVVALDRRSGSE------LWKNDELKYRQLTAPAV-- 318 (377)
T ss_pred ECCC-CcEEEeecc---C-CccCc--eEeCCEEEEECCCC---eEEEEECCCCcE------EEccccccCCccccCEE--
Confidence 3321 111111111 1 11111 23567777777778 899999876542 2222 2222233222
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeecc--ccce-eeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAE--HFMA-TDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~--~~~v-~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
.|..|++++. +|.|+++|..+++.+.... ...+ .+..+. + ..|+.++. ||.+..+
T Consensus 319 ~g~~l~~~~~---~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~-----dG~l~~~ 376 (377)
T TIGR03300 319 VGGYLVVGDF---EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTR-----DGDLYAF 376 (377)
T ss_pred ECCEEEEEeC---CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeC-----CceEEEe
Confidence 4668888877 9999999999998886533 2222 223333 2 34677777 7777654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-07 Score=93.63 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=64.0
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~ 141 (712)
|||.||+. +.....|.++|+.||.|.+ |.+..|. .| +||| ||.|++++.|.+|++.+||..+.++ .+.
T Consensus 79 ~~i~nl~~------~~~~~~~~d~f~~~g~ilS--~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-ki~ 146 (369)
T KOG0123|consen 79 VFIKNLDE------SIDNKSLYDTFSEFGNILS--CKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK-KIY 146 (369)
T ss_pred eeecCCCc------ccCcHHHHHHHHhhcCeeE--EEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC-eeE
Confidence 99999997 3447889999999999999 9999998 66 9999 9999999999999999999999886 555
Q ss_pred EEeec
Q 005140 142 VNMFD 146 (712)
Q Consensus 142 v~~~~ 146 (712)
|....
T Consensus 147 vg~~~ 151 (369)
T KOG0123|consen 147 VGLFE 151 (369)
T ss_pred Eeecc
Confidence 54443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=100.16 Aligned_cols=211 Identities=13% Similarity=0.239 Sum_probs=139.8
Q ss_pred EeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcC
Q 005140 238 VWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 238 iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
-|... ......+-+.++|.++.=+|...+-+||+.| |.|++|.-..+..+..+....... ++
T Consensus 2194 tq~~~-~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~d----------gsv~~~~w~~~~~v~~~rt~g~s~-------vt 2255 (2439)
T KOG1064|consen 2194 TQTSR-GASVMIKHPVENVRRMTSHPSDPYYLTGSQD----------GSVRMFEWGHGQQVVCFRTAGNSR-------VT 2255 (2439)
T ss_pred ceecc-cceeEeecccCceeeecCCCCCceEEecCCC----------ceEEEEeccCCCeEEEeeccCcch-------hh
Confidence 45555 4444555556679999999999999999999 999999988888777665432211 11
Q ss_pred CCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 318 GVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
.+.|+. .|+-+..+. ||.+.+|.+...-. .....|..+..++.|-. ..+++ ++.
T Consensus 2256 -----r~~f~~-qGnk~~i~d~dg~l~l~q~~pk~~-~s~qchnk~~~Df~Fi~--s~~~t-----ag~----------- 2310 (2439)
T KOG1064|consen 2256 -----RSRFNH-QGNKFGIVDGDGDLSLWQASPKPY-TSWQCHNKALSDFRFIG--SLLAT-----AGR----------- 2310 (2439)
T ss_pred -----hhhhcc-cCCceeeeccCCceeecccCCcce-eccccCCccccceeeee--hhhhc-----ccc-----------
Confidence 468888 777666665 99999999873222 22224444556666543 33333 110
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
++++.. +.+|+........ ..-..|.+.++++++.|..+
T Consensus 2311 ---------------------s~d~~n------------------~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2311 ---------------------SSDNRN------------------VCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred ---------------------CCCCCc------------------ccchhcccCcccc--eeeeecCCCceEEEEcCcce
Confidence 222221 2333332221111 11147899999999999999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 477 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.|++|+.+| .|++||++..+ ++++++. +. ...++++++. .|.++||++....++.+
T Consensus 2350 llisggr~G---~v~l~D~rqrq------l~h~~~~-------~~-~~~~f~~~ss---~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2350 LLISGGRKG---EVCLFDIRQRQ------LRHTFQA-------LD-TREYFVTGSS---EGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred EEEecCCcC---cEEEeehHHHH------HHHHhhh-------hh-hhheeeccCc---ccceEEEEccccchhhc
Confidence 999999999 99999997654 3333322 33 4567888887 99999999998777765
|
|
| >KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=88.67 Aligned_cols=84 Identities=26% Similarity=0.324 Sum_probs=73.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||-.|--|++ .++|.-||+.||.|.. |.+..|..||-+.-||||+|++.++.++|.-.|++.-++.+
T Consensus 238 PeNVLFVCKLNPVTt------DeDLeiIFSrFG~i~s--ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTT------DEDLEIIFSRFGKIVS--CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcceEEEEecCCccc------ccchhhHHhhccccee--eeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 468999999987666 6789999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEeeccccc
Q 005140 138 HIFAVNMFDDFDK 150 (712)
Q Consensus 138 ~~l~v~~~~~~~~ 150 (712)
.+.|-.-..+.+
T Consensus 310 -RIHVDFSQSVsk 321 (479)
T KOG0415|consen 310 -RIHVDFSQSVSK 321 (479)
T ss_pred -eEEeehhhhhhh
Confidence 555555444444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=90.43 Aligned_cols=287 Identities=13% Similarity=0.196 Sum_probs=166.2
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccc-cCCCcccceEEEcCCC---cEEEEEecCceEEeecccCcceeee
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVY-KRSYWTESFVQWSPLG---TYLATVHRQGAAVWGGANTFNRLMR 250 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~v~~v~~Spdg---~~lat~~~~~i~iw~~~~~~~~~~~ 250 (712)
....|-||++.++.. -+.. +-+....+.+-+-+ .-..|.|-.++|||.. .++++.+....++|++.........
T Consensus 30 ~si~p~grdi~lAsr-~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIe 107 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASR-QGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIE 107 (1081)
T ss_pred eeeccccchhhhhhh-cCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceE
Confidence 345567787744332 2222 22222333333322 2234888899999864 4688888888889987522222222
Q ss_pred e---cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCc-eeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 251 Y---AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 251 ~---~~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
| .|. +|+.+.|.|.. ..|++++.+ ..+..||+++-. .+..+..-..... .+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvd----------t~vh~wd~rSp~~p~ys~~~w~s~as-------------qV 164 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVD----------TYVHAWDMRSPHRPFYSTSSWRSAAS-------------QV 164 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeecccc----------ccceeeeccCCCcceeeeecccccCc-------------ee
Confidence 2 343 49999999976 578899999 789999987653 3333332221111 57
Q ss_pred EecCCCCCEEEEecCCeEEEEEcCCce-ecccccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 325 RWGGGKDKYFAKLGKNMISVYETESFT-LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 325 ~~s~~dg~~la~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+|+..++..+|+...+.|.+||+..|. .+.....+...|+.++|..-- ..+.. ++.++.++.|.|+-.+...-
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s-----~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMS-----SSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcc-----cCCCCceeeecccccccccc
Confidence 888757778888779999999998654 444444577777777776542 23333 55788888888876654322
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccc--cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC----
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT--KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH---- 476 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~---- 476 (712)
+..+ .......-.+-|-|.-.++.-..+... ..........|.... .+.....+.||.+.|..+.|-..+.
T Consensus 240 ~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~--~~~pVh~F~GH~D~V~eFlWR~r~e~~~d 316 (1081)
T KOG0309|consen 240 RTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD--LNTPVHTFVGHDDVVLEFLWRKRKECDGD 316 (1081)
T ss_pred eecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc--CCcceeeecCcchHHHHHhhhhcccccCC
Confidence 2111 011111222344444332222211100 000000011222222 2233467789999999998865433
Q ss_pred ------EEEEEEcCCCCCeEEEEEeec
Q 005140 477 ------RFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 477 ------~l~~~~~d~~~~~v~i~d~~~ 497 (712)
.|++-+.|. ++++|.+.+
T Consensus 317 ~d~rdfQLVTWSkD~---~lrlWpI~~ 340 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQ---TLRLWPIDS 340 (1081)
T ss_pred CCccceeEEEeecCC---ceEeeeccH
Confidence 688888898 999999865
|
|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-07 Score=97.33 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=68.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|.|.|||. .+....+++||..||+|.. |.+|.-...+.++|||||+|-++.+|.+|++.|.++.|-|+|
T Consensus 613 ~tKIlVRNipF------eAt~rEVr~LF~aFGqlks--vRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 613 GTKILVRNIPF------EATKREVRKLFTAFGQLKS--VRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cceeeeeccch------HHHHHHHHHHHhcccceee--eccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 67999999999 7779999999999999999 999998667888999999999999999999999999999875
Q ss_pred EEE
Q 005140 139 IFA 141 (712)
Q Consensus 139 ~l~ 141 (712)
...
T Consensus 685 LVL 687 (725)
T KOG0110|consen 685 LVL 687 (725)
T ss_pred hhe
Confidence 433
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-05 Score=70.99 Aligned_cols=232 Identities=13% Similarity=0.170 Sum_probs=133.8
Q ss_pred EEecCC--CCC-EEEEec-CCeEEEEEcCCce------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEE
Q 005140 324 FRWGGG--KDK-YFAKLG-KNMISVYETESFT------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 324 ~~~s~~--dg~-~la~~~-d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
+.|+.. +|. .++-+. .|.|.+|...... .+..+.+...-..++.|++.+..+++ .+..+.+..
T Consensus 75 m~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~v-------s~s~G~~~~ 147 (339)
T KOG0280|consen 75 MLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFV-------SDSRGSISG 147 (339)
T ss_pred eeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEE-------EcCCCcEEE
Confidence 555431 444 233333 8899998765221 11111111112457789999888877 333333333
Q ss_pred EecCCc--cceeeeeeeeecceeEEECcC-CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 394 VQIPSK--EELRQKNLFSVSDCKMYWQSS-GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 394 ~~~~~~--~~~~~~~~~~~~~~~~~~s~~-g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
...... +.+.....+........|+.. -+.+.++++|+. +..|+++..+.-+.. ...-|...|.++.
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~---------l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS---------LSCWDIRIPKTFIWH-NSKVHTSGVVSIY 217 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCce---------EEEEEecCCcceeee-cceeeecceEEEe
Confidence 332221 222233333333333334432 257777888876 788888843322111 1224678888888
Q ss_pred Eee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCC--CeEEEEeccCCCceEEEEECCc
Q 005140 471 WEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSG--RFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 471 ~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg--~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
-+| .+.++++|+.|. .|++||.+.... ++..-. ++.|.-+.++|.- +.|+++. -.-.+|.+.+.
T Consensus 218 ss~~~~~~I~TGsYDe---~i~~~DtRnm~k-----Pl~~~~v~GGVWRi~~~p~~~~~lL~~CM----h~G~ki~~~~~ 285 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDE---CIRVLDTRNMGK-----PLFKAKVGGGVWRIKHHPEIFHRLLAACM----HNGAKILDSSD 285 (339)
T ss_pred cCCCCCceEEEecccc---ceeeeehhcccC-----ccccCccccceEEEEecchhhhHHHHHHH----hcCceEEEecc
Confidence 877 688999999998 899999986443 343332 4578999999953 3344433 33455655542
Q ss_pred c--e-----eeeeccccceeeEEECCCCCEEEEEEccceeccccEE-EEE
Q 005140 547 L--E-----TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFN-IWS 588 (712)
Q Consensus 547 ~--~-----~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~-iw~ 588 (712)
. + ...+.|.+.+..-.|.....+|||++.. |+.++ +|-
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY----Dk~~~~~Wl 331 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY----DKKIRQLWL 331 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeecc----ccceeeeee
Confidence 1 1 1234677788888897777789998875 66644 674
|
|
| >PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=69.39 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=59.9
Q ss_pred CEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 60 NIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
++|-+.||| ..+. +.|.+.|.+.| .|..-- ++||.|-.++.+.|||||.|.+++.|.+-.+.++|..+....
T Consensus 2 TTvMirNIPn~~t~---~~L~~~l~~~~--~g~yDF--~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~ 74 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQ---EMLIQILDEHF--KGKYDF--FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN 74 (97)
T ss_pred eeEEEecCCCCCCH---HHHHHHHHHhc--cCcceE--EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC
Confidence 589999999 4554 44555555544 366666 999999999999999999999999999999999999886443
Q ss_pred EEEEE
Q 005140 139 IFAVN 143 (712)
Q Consensus 139 ~l~v~ 143 (712)
.-+++
T Consensus 75 s~Kvc 79 (97)
T PF04059_consen 75 SKKVC 79 (97)
T ss_pred CCcEE
Confidence 33333
|
It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00013 Score=77.77 Aligned_cols=95 Identities=16% Similarity=0.290 Sum_probs=65.0
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee------------eeecc-
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET------------MATAE- 554 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~------------~~~~~- 554 (712)
.|.+.|..+... .....+..++ +.....+.+||||+++++++. .+.++.|+|+.+.+. .....
T Consensus 297 ~V~VID~~t~~~-~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 297 KVPVVDGRKAAN-AGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred EEEEEECCcccc-CCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 688888765100 0012444444 456788999999999998875 389999999987553 22221
Q ss_pred ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 555 HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 555 ~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
.......+|+++|....+... |..+-.|++..
T Consensus 374 GlGPLHTaFDg~G~aytslf~-----dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFL-----DSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEee-----cceeEEEehHH
Confidence 234457899999986666666 89999999764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0001 Score=68.30 Aligned_cols=221 Identities=9% Similarity=0.067 Sum_probs=132.0
Q ss_pred CCCEEEEec-CCeEEEEEcCCceeccc-ccccccCee---eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce-e
Q 005140 330 KDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVM---DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL-R 403 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~---~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~ 403 (712)
...+||.++ .|...+|...+....-. ...+..+|. ..+-+. .-+.. ++.+.++++..++..+.+.. .
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~--~~~~i-----~sndht~k~~~~~~~s~~~~~h 155 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK--FPLNI-----ASNDHTGKTMVVSGDSNKFAVH 155 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc--cceee-----ccCCcceeEEEEecCcccceee
Confidence 455788886 89999999875543211 111222221 111111 11222 55788888888877664422 1
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
..+ .....++.+++++++++..+... +-+|.++..+.....+.+....+.-.+..|+.....||++..
T Consensus 156 ~~~---~~~ns~~~snd~~~~~~Vgds~~---------Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 156 NQN---LTQNSLHYSNDPSWGSSVGDSRR---------VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred ccc---cceeeeEEcCCCceEEEecCCCc---------ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec
Confidence 111 22334578999999988776554 567777766655544445444566677899999999999999
Q ss_pred CCCCCeEEEEEeecccccCcee-EEEEeCCCceeEEEEccCCC--eEEEEeccCCCceEEEEECCcceeeee--------
Q 005140 484 DSPRPDISFYSMRTAQHAGRVS-KLTTLKGKQANALFWSPSGR--FIVLAGLKGFNGQLEFYNVDELETMAT-------- 552 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~--~l~~~~~~~~dg~v~iwd~~~~~~~~~-------- 552 (712)
|| .+.|||++......... ..+.-+.+.+..+.|||-|. +|+..-. -+.+.+.|++++.-...
T Consensus 224 dg---~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh---fs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 224 DG---TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH---FSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred CC---cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC---cceEEEEEcccCceeeEEecCcccc
Confidence 99 99999998654311000 01111244688899998764 3444433 68899999987654322
Q ss_pred -ccc-cceeeEEECCCCCEEEEEEc
Q 005140 553 -AEH-FMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 553 -~~~-~~v~~~~~spdg~~l~t~s~ 575 (712)
.|. ..+....|+.++..+.+.+.
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred ccccccccccccccCCCcccccccc
Confidence 111 22555666666655544443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00026 Score=75.60 Aligned_cols=258 Identities=12% Similarity=0.061 Sum_probs=137.0
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec-cCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF-KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
+..+.+||||++||.+-... ++...+|+++|+.+|+.+... ...... .+.|++ |++.|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~-----G~e~~~l~v~Dl~tg~~l~d~i~~~~~~---------------~~~W~~-d~~~~ 184 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDG-----GSEWYTLRVFDLETGKFLPDGIENPKFS---------------SVSWSD-DGKGF 184 (414)
T ss_dssp EEEEEETTTSSEEEEEEEET-----TSSEEEEEEEETTTTEEEEEEEEEEESE---------------EEEECT-TSSEE
T ss_pred eeeeeECCCCCEEEEEecCC-----CCceEEEEEEECCCCcCcCCcccccccc---------------eEEEeC-CCCEE
Confidence 44688999999998664331 112267999999999776532 221111 389999 98877
Q ss_pred EEec-CC-----------eEEEEEcCCceecccccccc---cC-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 335 AKLG-KN-----------MISVYETESFTLIDKKSLKV---EN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 335 a~~~-d~-----------~i~iwd~~~~~~~~~~~~~~---~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+... +. .|..|.+.+...-....... .. ...+..++++++|++..... .+ ...+|+.+...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~ 261 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDD 261 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCC
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccc
Confidence 6655 22 25666665443221121211 12 56788999999988754332 22 47888888876
Q ss_pred c----cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc--eeEEEecCCCCceEEEEEe
Q 005140 399 K----EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP--IEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 399 ~----~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~h~~~v~~~~~s 472 (712)
. ......... ...........|..+.+.++.+. ....|+.+...... .....+..|...+.--.++
T Consensus 262 ~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~a-------~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 262 GGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDDA-------PNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp TTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT--------TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred cCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCCC-------CCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 4 111111111 11111112222555555555432 12355655543322 1122344556544444556
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEee-cccccCceeEEEEeC-CCceeEEEEccCCCeEEEEecc-CCCceEEEEECCccee
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMR-TAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELET 549 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~-~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~-~~dg~v~iwd~~~~~~ 549 (712)
..+++|++....+....|+++++. +... ....+. .+.+..+...+++..+.+...+ ...++++-||+.+++.
T Consensus 334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~-----~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 334 LFKDYLVLSYRENGSSRLRVYDLDDGKES-----REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETTEEEEEEEETTEEEEEEEETT-TEEE-----EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCEEEEEEEECCccEEEEEECCCCcEE-----eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 677888888776666689999986 2211 222222 3345566656666655443321 2367888999987765
Q ss_pred e
Q 005140 550 M 550 (712)
Q Consensus 550 ~ 550 (712)
.
T Consensus 409 ~ 409 (414)
T PF02897_consen 409 T 409 (414)
T ss_dssp E
T ss_pred E
Confidence 3
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=91.01 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=65.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET---QKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~---~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+.|||.||++.+ ..+.|...|.+.|.|.. +.|++-+.. -.|.|||||+|.++++|..|++.|+|+.|+|
T Consensus 516 t~lfvkNlnf~T------t~e~l~~~F~k~G~VlS--~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 516 TKLFVKNLNFDT------TLEDLEDLFSKQGTVLS--IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhhhhcCCccc------chhHHHHHHHhcCeEEE--EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 449999999844 37889999999999999 888776522 1356999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
|.+.+....
T Consensus 588 -H~l~lk~S~ 596 (725)
T KOG0110|consen 588 -HKLELKISE 596 (725)
T ss_pred -ceEEEEecc
Confidence 788877643
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.3e-07 Score=81.79 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-CC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL-DR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~-~~ 136 (712)
-++++||+-|-+ ...|++++++|..||.|.+ |.+-..+ .|.+||.|||.|.+.-+|..||..|+|... -|
T Consensus 18 ~drklfvgml~k------qq~e~dvrrlf~pfG~~~e--~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNK------QQSEDDVRRLFQPFGNIEE--CTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cchhhhhhhhcc------cccHHHHHHHhcccCCcce--eEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 456899999998 5559999999999999999 9998888 899999999999999999999999999643 33
Q ss_pred ceEEEEEeecccc
Q 005140 137 AHIFAVNMFDDFD 149 (712)
Q Consensus 137 ~~~l~v~~~~~~~ 149 (712)
-..-.|-.+.|-+
T Consensus 89 ASSSLVVK~ADTd 101 (371)
T KOG0146|consen 89 ASSSLVVKFADTD 101 (371)
T ss_pred CccceEEEeccch
Confidence 2233344444433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-05 Score=75.12 Aligned_cols=257 Identities=12% Similarity=0.188 Sum_probs=148.5
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCce-----eccccccc------------ccCeeeEEECCCCC--eEEEEeecC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFT-----LIDKKSLK------------VENVMDFSWSPTDP--IISLFVPEL 382 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-----~~~~~~~~------------~~~v~~~~~sp~~~--~la~~~~~~ 382 (712)
++.|.. .|.|++++. .|.|.+|.-.... .......| ...|..+.|..++. .+++
T Consensus 31 aVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl----- 104 (460)
T COG5170 31 AVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL----- 104 (460)
T ss_pred EEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE-----
Confidence 688888 999999999 8999998755322 11111111 12477888876642 3333
Q ss_pred CCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce----eEEE
Q 005140 383 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI----EVLE 458 (712)
Q Consensus 383 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~ 458 (712)
.+.+.++++|.+--...+.+...++...- + +|-|.-+.+. ..+.+=++.....-+ ..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~----~-~~~~g~~~s~------------~~l~lprls~hd~iiaa~p~rvy 167 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSF----H-SPMGGPLTST------------KELLLPRLSEHDEIIAAKPCRVY 167 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccccccc----c-cccCCCcCCH------------HHhhcccccccceEEEeccceec
Confidence 45788888887765555554444332211 1 1211111000 001111111110000 0112
Q ss_pred ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-------ceeEEEEccCCCeEEE-E
Q 005140 459 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------QANALFWSPSGRFIVL-A 530 (712)
Q Consensus 459 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------~v~~l~~spdg~~l~~-~ 530 (712)
-..|...|.+++++.|...++++. +- .|.+|++.-..+.. .+-.+..+ .|++..|+|....++. .
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaD-dL---rINLWnl~i~D~sF---nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSAD-DL---RINLWNLEIIDGSF---NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred cccceeEeeeeeecCchheeeecc-ce---eeeeccccccCCce---EEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 236788899999998888777654 33 68899986544321 12223222 3688899997554433 3
Q ss_pred eccCCCceEEEEECCccee------e-e-----------eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec--
Q 005140 531 GLKGFNGQLEFYNVDELET------M-A-----------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-- 590 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~~------~-~-----------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-- 590 (712)
+. .|.|++-|++...+ + . +.-...|+++.|+++|+||++-+. .+++|||.+
T Consensus 241 sS---kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy------ltvkiwDvnm~ 311 (460)
T COG5170 241 SS---KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY------LTVKIWDVNMA 311 (460)
T ss_pred cC---CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc------ceEEEEecccc
Confidence 33 79999999873211 1 0 011256789999999999999887 899999986
Q ss_pred Cceeeeecc--------------cce---eeeEEecCCCCCCChh
Q 005140 591 GKLLYRTLK--------------DHF---FQFLWRPRPPSFLTPE 618 (712)
Q Consensus 591 g~~~~~~~~--------------~~i---~~~~w~p~~~~l~s~~ 618 (712)
...+.+.+. +.| ..+.||-+...+++++
T Consensus 312 k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 312 KNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred cCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 344444311 222 3477888887877776
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-06 Score=87.34 Aligned_cols=299 Identities=9% Similarity=0.168 Sum_probs=174.2
Q ss_pred Ccceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCc
Q 005140 244 TFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 244 ~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
++.+...+. ..++..+.++|.|+-+|.++.. | +.+.|+.. +.+.+-+..-.... .
T Consensus 14 tf~kslsl~v~~~~~a~si~p~grdi~lAsr~----------g-l~i~dld~p~~ppr~l~h~tpw~--------v---- 70 (1081)
T KOG0309|consen 14 TFGKSLSLKVDGGFNAVSINPSGRDIVLASRQ----------G-LYIIDLDDPFTPPRWLHHITPWQ--------V---- 70 (1081)
T ss_pred ccCceeEEEecCcccceeeccccchhhhhhhc----------C-eEEEeccCCCCCceeeeccCcch--------h----
Confidence 444444444 3458899999999999999888 5 55667643 23322222111111 0
Q ss_pred CeEEecCC--CCCEEEEecCCeEEEEEcCCc--eec-ccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEEe
Q 005140 322 PVFRWGGG--KDKYFAKLGKNMISVYETESF--TLI-DKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 322 ~~~~~s~~--dg~~la~~~d~~i~iwd~~~~--~~~-~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~ 395 (712)
...+|||+ -...+++.+...-.+|++... +.+ --+..|..+|+++.|+|...- +++ ++.+..+..|...
T Consensus 71 ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlat-----csvdt~vh~wd~r 145 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT-----CSVDTYVHAWDMR 145 (1081)
T ss_pred cceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceee-----ccccccceeeecc
Confidence 04678774 233566666666678887522 222 123356678999999998654 455 5566666666554
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-C
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-K 474 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~ 474 (712)
.+.. ++...........++.|+-....+.+.+.... +.+|+++..+.|. ..+.+|...|+.++|.. .
T Consensus 146 Sp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~---------i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 146 SPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGND---------IFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred CCCc-ceeeeecccccCceeeecccCcchhhhccCCc---------eEEEeccCCCcce--EEecccceeeehHHHhhhh
Confidence 4432 22222223334445677754444444443333 7899998877775 44556778888888765 3
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc------
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL------ 547 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~------ 547 (712)
-..+.+.+.|+ +|++|+....... .-+.+. ..++.-..+-|-|.-.++--... +..+.+++.++.
T Consensus 214 ~s~~~s~~~d~---tvkfw~y~kSt~e----~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 214 YSEIMSSSNDG---TVKFWDYSKSTTE----SKRTVTTNFPIWRGRYLPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred hhhhcccCCCC---ceeeecccccccc----cceeccccCcceeccccccCceeEeccccC-Ceeeeeccccchhhhhcc
Confidence 34566777888 9999998653322 222222 33566667777665443322100 234444544421
Q ss_pred ----eeee--eccccceeeEEECCCCC----------EEEEEEccceeccccEEEEEecCceee
Q 005140 548 ----ETMA--TAEHFMATDVEWDPTGR----------YVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 548 ----~~~~--~~~~~~v~~~~~spdg~----------~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
+.+. .+|...|..+.|-..+. .|+|.+. |..+++|-+....+.
T Consensus 286 ~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk-----D~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK-----DQTLRLWPIDSQIQR 344 (1081)
T ss_pred ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec-----CCceEeeeccHHHHH
Confidence 1222 36666776666654332 6899999 999999998765443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=78.63 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=99.3
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
..++.|+++|++..... ..++.+..............-...-+++.+..+.....++..-|....+.+|..
T Consensus 69 ~~s~~~~llAv~~~~K~---------~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQ---------RAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccCCCceEEEEEeCCCc---------eEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 35788888888877654 345555543321111111111333444555555555555555442224555554
Q ss_pred ecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---eeccccceeeEEECCCCCEE
Q 005140 496 RTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM---ATAEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~---~~~~~~~v~~~~~spdg~~l 570 (712)
..+. ....+ +| .+..++||||+++|+++.. |..|++-.+...-.+ ..+|..-|..++.-++ ..|
T Consensus 140 ~~~~------~~~~l-GhvSml~dVavS~D~~~IitaDR---DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~L 208 (390)
T KOG3914|consen 140 DSGR------CEPIL-GHVSMLLDVAVSPDDQFIITADR---DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLL 208 (390)
T ss_pred cccC------cchhh-hhhhhhheeeecCCCCEEEEecC---CceEEEEecCcccchhhhccccHhheeeeeeccC-cee
Confidence 3321 11112 33 5789999999999999998 999999887744433 3478888999998875 458
Q ss_pred EEEEccceeccccEEEEEec-Cceeeee
Q 005140 571 ATAVTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
++++. |+++++|++. |+++...
T Consensus 209 lS~sG-----D~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 209 LSGSG-----DKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eecCC-----CCcEEEEecccCCccccc
Confidence 99999 9999999986 7666543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.3e-05 Score=70.65 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=94.5
Q ss_pred eEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC-CeEEEEeccCCCceEEEE
Q 005140 466 IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG-RFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg-~~l~~~~~~~~dg~v~iw 542 (712)
..++.|++.|..++++..+| .+.+-+.... .++.+...+.| .+....|+-.. +.+.+|+. |+.+..|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G---~~~~v~~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD---D~~l~~~ 193 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRG---SISGVYETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD---DGSLSCW 193 (339)
T ss_pred eeEEEeeccCceEEEEcCCC---cEEEEeccee----eeeecccccccceeeeeeecccCCCceEEecCC---CceEEEE
Confidence 44788999999988888877 6664443221 12233345555 45667776544 46677776 9999999
Q ss_pred ECC-cceeee---eccccceeeEEECC-CCCEEEEEEccceeccccEEEEEec--Cceeeee-cccceeeeEEecCCC
Q 005140 543 NVD-ELETMA---TAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSFN--GKLLYRT-LKDHFFQFLWRPRPP 612 (712)
Q Consensus 543 d~~-~~~~~~---~~~~~~v~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~~--g~~~~~~-~~~~i~~~~w~p~~~ 612 (712)
|++ ..+.+. ..|+..|.++.-|| .+.+|+||+. |..+++||.. |+.+... ..+.||.+.|+|.-.
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY-----De~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY-----DECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCCCceEEEecc-----ccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 998 333333 36778888888886 5789999999 9999999976 6666655 348999999999643
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-06 Score=77.05 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=59.8
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+|||.||+. ..|.+.|...|..+|++||+|.+ |..- + |.+.||-|||.|.+.+.|..|++.|+|+.+-++
T Consensus 11 TlYInnLne--kI~~~elkrsL~~LFsqfG~ild--I~a~--k-t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 11 TLYINNLNE--KIKKDELKRSLYLLFSQFGKILD--ISAF--K-TPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred eEeehhccc--cccHHHHHHHHHHHHHhhCCeEE--EEec--C-CCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 999999994 23447788888889999999977 5433 3 789999999999999999999999999998776
|
|
| >KOG0533 consensus RRM motif-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=80.13 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=72.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-...|+|.|||. .+...+|+++|..||.++. +.|-+|+ .|++.|-|=|.|...++|..|++.+||..++++
T Consensus 82 ~~~~v~v~NL~~------~V~~~Dl~eLF~~~~~~~r--~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 82 RSTKVNVSNLPY------GVIDADLKELFAEFGELKR--VAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred CcceeeeecCCc------CcchHHHHHHHHHhccceE--EeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 346899999998 5669999999999999999 9999998 999999999999999999999999999999997
Q ss_pred eEEEEEeecccccc
Q 005140 138 HIFAVNMFDDFDKF 151 (712)
Q Consensus 138 ~~l~v~~~~~~~~~ 151 (712)
.+++.....-...
T Consensus 153 -~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 153 -PMKIEIISSPSQS 165 (243)
T ss_pred -eeeeEEecCcccc
Confidence 5666665543333
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=83.69 Aligned_cols=76 Identities=26% Similarity=0.345 Sum_probs=67.4
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
+.|||..+-. +..+.+|+.+|+-||+|.. |.+..++.++.+|||+||+|.+...-..|+..||-+.|+|. -
T Consensus 211 nRiYVaSvHp------DLSe~DiKSVFEAFG~I~~--C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ-y 281 (544)
T KOG0124|consen 211 NRIYVASVHP------DLSETDIKSVFEAFGEIVK--CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-Y 281 (544)
T ss_pred heEEeeecCC------CccHHHHHHHHHhhcceee--EEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc-e
Confidence 5788887765 6779999999999999999 99999998889999999999999999999999999999885 5
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
|+|-+
T Consensus 282 LRVGk 286 (544)
T KOG0124|consen 282 LRVGK 286 (544)
T ss_pred Eeccc
Confidence 55443
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=84.06 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=69.8
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhc-cCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQ-IGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~-~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+-+||.|||. +.-..+|+.+|.. .|+|+. |.+-.|+ +|++||.|.|||+++|.+++|++.||.+.+.++
T Consensus 45 R~vfItNIpy------d~rWqdLKdLvrekvGev~y--veLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR- 114 (608)
T KOG4212|consen 45 RSVFITNIPY------DYRWQDLKDLVREKVGEVEY--VELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGR- 114 (608)
T ss_pred ceEEEecCcc------hhhhHhHHHHHHHhcCceEe--eeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCc-
Confidence 4599999998 6668889988865 689999 9999998 999999999999999999999999999999996
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.|+|.--.+
T Consensus 115 ~l~vKEd~d 123 (608)
T KOG4212|consen 115 ELVVKEDHD 123 (608)
T ss_pred eEEEeccCc
Confidence 888876555
|
|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-06 Score=87.08 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=73.5
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
...+..++|.||..++- -.+|+.||++||.|+- ..++.+..+--.+.|+||++.+.++|.++|+.|+.+.|.
T Consensus 402 s~~gRNlWVSGLSstTR------AtDLKnlFSKyGKVvG--AKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH 473 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTR------ATDLKNLFSKYGKVVG--AKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH 473 (940)
T ss_pred cccccceeeeccccchh------hhHHHHHHHHhcceec--eeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc
Confidence 55889999999998665 6789999999999998 899998777778999999999999999999999999999
Q ss_pred CceEEEEEeecc
Q 005140 136 RAHIFAVNMFDD 147 (712)
Q Consensus 136 ~~~~l~v~~~~~ 147 (712)
++ ++.|-..++
T Consensus 474 Gr-mISVEkaKN 484 (940)
T KOG4661|consen 474 GR-MISVEKAKN 484 (940)
T ss_pred ce-eeeeeeccc
Confidence 86 888776543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00024 Score=65.90 Aligned_cols=192 Identities=12% Similarity=0.026 Sum_probs=120.5
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~ 343 (712)
.-+||.|+.. |...+|...+.+. +.....+...+.+ ++ ..+-+ .-..+++..|.+++
T Consensus 84 c~~la~gG~~----------g~fd~~~~~tn~~h~~~cd~snn~v~~-----~~-----r~cd~--~~~~~i~sndht~k 141 (344)
T KOG4532|consen 84 CVTLADGGAS----------GQFDLFACNTNDGHLYQCDVSNNDVTL-----VK-----RYCDL--KFPLNIASNDHTGK 141 (344)
T ss_pred ccEEEecccc----------ceeeeecccCcccceeeecccccchhh-----hh-----hhccc--ccceeeccCCccee
Confidence 3578888888 8999999876543 2222222222110 00 01111 11234444488888
Q ss_pred EEEcCCceecccccccccC--eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-eee--eecceeEEEC
Q 005140 344 VYETESFTLIDKKSLKVEN--VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLF--SVSDCKMYWQ 418 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~--v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~s 418 (712)
+.++..+.. +...|.+. +.+++++|+++++++ -+...+|..|.++........ ... ........|+
T Consensus 142 ~~~~~~~s~--~~~~h~~~~~~ns~~~snd~~~~~~-------Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 142 TMVVSGDSN--KFAVHNQNLTQNSLHYSNDPSWGSS-------VGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS 212 (344)
T ss_pred EEEEecCcc--cceeeccccceeeeEEcCCCceEEE-------ecCCCcceEEEeCCccceeeeeEecccCCCceeeeec
Confidence 887764322 22245544 788999999999998 344456777777654322222 111 2223445799
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCceEEEEEeeCCC--EEEEEEcCCCCCeEEEEE
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDKIIAFAWEPKGH--RFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~v~~~~~sp~g~--~l~~~~~d~~~~~v~i~d 494 (712)
.....+|++..+++ +.+|+++....|..... -+.|++.+..+.|+|-|. .|...-.-+ .+.+.|
T Consensus 213 ~~~~~FAv~~Qdg~---------~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs---~~hv~D 280 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGT---------CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS---RVHVVD 280 (344)
T ss_pred cCcceEEEEecCCc---------EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc---eEEEEE
Confidence 99999999999988 89999998777654433 456899999999998663 344443344 789999
Q ss_pred eeccc
Q 005140 495 MRTAQ 499 (712)
Q Consensus 495 ~~~~~ 499 (712)
+++..
T Consensus 281 ~R~~~ 285 (344)
T KOG4532|consen 281 TRNYV 285 (344)
T ss_pred cccCc
Confidence 97754
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.002 Score=63.73 Aligned_cols=268 Identities=9% Similarity=0.125 Sum_probs=152.7
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-----------CCeEEEEEcCCceec
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----------KNMISVYETESFTLI 353 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-----------d~~i~iwd~~~~~~~ 353 (712)
+.+.|+|..+++.+-.+...... .+..|| |++.+++.. ...|.+||..+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~---------------~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG---------------NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---------------EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred ceEEEEECCCCcEEEEeecccCC---------------ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 57889998888887776654433 467899 999887643 245899999987654
Q ss_pred cccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE-CcCCCEEE
Q 005140 354 DKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW-QSSGDYLA 425 (712)
Q Consensus 354 ~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~ 425 (712)
....+. ......+++|++|+++.++. -.-...|.+.|+..++.+..... ..|.+.+ +.+ +.+.
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv~ei~~---PGC~~iyP~~~-~~F~ 151 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVVGEIDT---PGCWLIYPSGN-RGFS 151 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEEEEEEG---TSEEEEEEEET-TEEE
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCceeeeecC---CCEEEEEecCC-CceE
Confidence 322222 12345679999999998842 23344688888888776654332 2222222 122 2344
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCc-eEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDK-IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG 502 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~-v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~ 502 (712)
+...|+. +..+.+...+......+ +..-..+ +..-+++..+..++..+-.| .|+-.++.....
T Consensus 152 ~lC~DGs---------l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G---~v~~~dlsg~~~-- 217 (342)
T PF06433_consen 152 MLCGDGS---------LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG---NVYSADLSGDSA-- 217 (342)
T ss_dssp EEETTSC---------EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS---EEEEEEETTSSE--
T ss_pred EEecCCc---------eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC---EEEEEeccCCcc--
Confidence 5555544 45555554444432111 1111222 23445666667777778888 777777754321
Q ss_pred ceeEEEEeC--------CC----ceeEEEEccCCCeEEEEec-cC------CCceEEEEECCcceeeeeccc-cceeeEE
Q 005140 503 RVSKLTTLK--------GK----QANALFWSPSGRFIVLAGL-KG------FNGQLEFYNVDELETMATAEH-FMATDVE 562 (712)
Q Consensus 503 ~~~~~~~~~--------~~----~v~~l~~spdg~~l~~~~~-~~------~dg~v~iwd~~~~~~~~~~~~-~~v~~~~ 562 (712)
....... .+ .-..+++++....|++... +. ....|.+||+.+++.+...+- ..+.+++
T Consensus 218 --~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~ 295 (342)
T PF06433_consen 218 --KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIA 295 (342)
T ss_dssp --EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEE
T ss_pred --cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEE
Confidence 1222221 11 1234788876655555332 11 223588889999999988663 5677999
Q ss_pred ECCCCCEEEEE-EccceeccccEEEEEec-Cceeeee
Q 005140 563 WDPTGRYVATA-VTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 563 ~spdg~~l~t~-s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
.|.+.+-++.+ +.. ++.+.+||.. |+++...
T Consensus 296 Vsqd~~P~L~~~~~~----~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 296 VSQDDKPLLYALSAG----DGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EESSSS-EEEEEETT----TTEEEEEETTT--EEEEE
T ss_pred EccCCCcEEEEEcCC----CCeEEEEeCcCCcEEeeh
Confidence 99998844443 331 6889999965 6666654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0226 consensus RNA-binding proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=78.39 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+..||.+-|-. ++..+.|-+.|.+|-.-.. ..+.+|+.||++|||+||.|.++.++..|++.|||..++.+
T Consensus 189 ~DfRIfcgdlgN------evnd~vl~raf~Kfpsf~~--akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 189 DDFRIFCGDLGN------EVNDDVLARAFKKFPSFQK--AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccceeecccccc------cccHHHHHHHHHhccchhh--ccccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 567999999997 6668889999999976555 78999999999999999999999999999999999888764
Q ss_pred eEEEEE
Q 005140 138 HIFAVN 143 (712)
Q Consensus 138 ~~l~v~ 143 (712)
.++..
T Consensus 261 -piklR 265 (290)
T KOG0226|consen 261 -PIKLR 265 (290)
T ss_pred -hhHhh
Confidence 54443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-05 Score=82.42 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=79.5
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
+-.+|+|...++++++-.+-. .|.|.||- .+|++-+....+-... +++|.| ..-.|+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er------~GSVtIfa-dtGEPqr~Vt~P~hat--------------SLCWHp-e~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPER------GGSVTIFA-DTGEPQRDVTYPVHAT--------------SLCWHP-EEFVLAQ 76 (1416)
T ss_pred cccccCCCCceeEEEEecCCC------CceEEEEe-cCCCCCcccccceehh--------------hhccCh-HHHHHhh
Confidence 456899999999888765322 27888886 6888766555443332 689999 7767777
Q ss_pred ec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
+- -|.+.+|...+.+.......|...+..+.|||+|..+++ +..-+.+.+|.++
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t-----~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT-----LDNPGSVHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE-----cCCCceeEEEEee
Confidence 66 899999998766544334456677999999999999998 3334444555555
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0028 Score=67.76 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=136.9
Q ss_pred eEEecCCCCCEEEEec--C----CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCC------CeE
Q 005140 323 VFRWGGGKDKYFAKLG--K----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ------PAR 390 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~------~~~ 390 (712)
.+++|| ||+++|.+- . ..|+++|+.+++.+... +.......+.|+++++.+.+..... ... +..
T Consensus 128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~--~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDE--DQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECST--TTSS-CCGCCEE
T ss_pred eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCc--ccccccCCCCcE
Confidence 468899 999998764 3 35999999999776432 2222223499999999888754333 223 778
Q ss_pred EEEEecCCccc----eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc---ceeEEEecCCC
Q 005140 391 VSLVQIPSKEE----LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI---PIEVLELDNKN 463 (712)
Q Consensus 391 i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~h~ 463 (712)
|+.+.+.+... +....-.....+.+..+++|++|++.+..+. . ...+|.+..... ......+..+.
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~------~-~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT------S-ESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS------S-EEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc------c-CCeEEEEeccccCCCcCCcEEEeCCC
Confidence 99998876532 2111111111345678999999998777654 1 135555554432 11112222223
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
..+....-+..+.+++....+.+...|.-.++...... ....+..-+...+.--.++..+.+|++....+....|.+++
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 34433333334444444444444445655666543321 11111111122233344555677777766544466899999
Q ss_pred CC-cceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 544 VD-ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 544 ~~-~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+. +...... ...+.+..+...+++..+.....+ ......++-||+...
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss-~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS-FTTPPTVYRYDLATG 406 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE-TTEEEEEEEEETTTT
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC-CCCCCEEEEEECCCC
Confidence 99 5444332 334556677777777755544432 011567777777644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-05 Score=80.44 Aligned_cols=110 Identities=11% Similarity=0.169 Sum_probs=77.9
Q ss_pred CcccceEEEcCCCcEEEEEec----Cc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 213 YWTESFVQWSPLGTYLATVHR----QG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~----~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
....+..+|+|...++|.++- .| |-|+--. +.+.....-+ .+.+++|+|..-.|+.|-.. |.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfadt--GEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~----------g~ 82 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFADT--GEPQRDVTYPVHATSLCWHPEEFVLAQGWEM----------GV 82 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEecC--CCCCcccccceehhhhccChHHHHHhhcccc----------ce
Confidence 344456789999999988763 23 6666433 3332222222 26789999998888888887 89
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.+|...+.+.-.....|...+. .+.||+ +|..+.++. -|.+.+|...
T Consensus 83 ~~v~~~~~~e~htv~~th~a~i~-------------~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQKTNTTETHTVVETHPAPIQ-------------GLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEecCCceeeeeccCCCCCce-------------eEEecC-CCCeEEEcCCCceeEEEEee
Confidence 99999755554443444544432 689999 999999999 8999999876
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-06 Score=83.52 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=64.8
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.+.+|.|||.|||. +.+.+.|++.|..||.|.. ..| + +.|++|| .|.|.++++|++|+..|||..++
T Consensus 533 arKa~qIiirNlP~------dfTWqmlrDKfre~G~v~y--adi-m--e~GkskG--VVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 533 ARKACQIIIRNLPF------DFTWQMLRDKFREIGHVLY--ADI-M--ENGKSKG--VVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred cccccEEEEecCCc------cccHHHHHHHHHhccceeh--hhh-h--ccCCccc--eEEecCHHHHHHHHHHhccCccc
Confidence 44679999999998 7789999999999999988 666 3 3699999 89999999999999999999999
Q ss_pred CceEEEEE
Q 005140 136 RAHIFAVN 143 (712)
Q Consensus 136 ~~~~l~v~ 143 (712)
++ .++|.
T Consensus 600 Gr-~I~V~ 606 (608)
T KOG4212|consen 600 GR-NIKVT 606 (608)
T ss_pred Cc-eeeee
Confidence 97 55553
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.7e-06 Score=92.10 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=102.5
Q ss_pred CCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 202 HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 202 ~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.+.....|..|...-+|++||-+.+.|+.|+..| |+++++. ++...... |...|+.+.=|-||..+++.+.-..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-- 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-- 1166 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-CccccccccccccccccccccCCcceeeeeccccC--
Confidence 3556667788888899999999999999999999 9999998 66655444 3345999999999998887665410
Q ss_pred CcCCCccEEEEEEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc
Q 005140 279 PRDANRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
--..+|++. ++...++|...+ ++.||. .-++-+.+. .....+||+.++..+.+.
T Consensus 1167 ------PlsaLW~~~s~~~~~Hsf~ed~-----------------~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1167 ------PLSALWDASSTGGPRHSFDEDK-----------------AVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ------chHHHhccccccCccccccccc-----------------eeehhh-hHHHHHhcccccceEEEecccCcHHHHh
Confidence 134589974 345556665432 578887 544434444 567889999998876553
Q ss_pred cccc----cCeeeEEECCCCCeEE
Q 005140 357 SLKV----ENVMDFSWSPTDPIIS 376 (712)
Q Consensus 357 ~~~~----~~v~~~~~sp~~~~la 376 (712)
.... -.-++..|||++..|.
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred cCcchhhhhhccccccCCCcceEe
Confidence 1111 1135677888877665
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0049 Score=64.45 Aligned_cols=138 Identities=15% Similarity=0.269 Sum_probs=90.5
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEc----CCC-CCeEEEEEeecccccCceeEEEEeC-CC
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHG----DSP-RPDISFYSMRTAQHAGRVSKLTTLK-GK 513 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~----d~~-~~~v~i~d~~~~~~~~~~~~~~~~~-~~ 513 (712)
++.++.+... ..+.+....-.....++.||-. ...+.+... ++. .-.-.+|++...+ .+...+.+++ ..
T Consensus 185 Nl~L~~~~~~--klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k--lqrvsvtsipL~s 260 (545)
T PF11768_consen 185 NLHLLSCSGG--KLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK--LQRVSVTSIPLPS 260 (545)
T ss_pred cEEEEEecCC--cEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc--eeEEEEEEEecCC
Confidence 4555555543 2222221111444566777763 333433322 221 1133567764322 1233444555 44
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.+.+.+++|+...++.|+. ||.|.+||...+..........++.++|+|+|..|++|+. .|.+.+||..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~-----qGelQ~FD~A 329 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCE---DGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSE-----QGELQCFDMA 329 (545)
T ss_pred cceEEecCcccceEEEEec---CCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcC-----CceEEEEEee
Confidence 7899999999999999999 9999999998665555555567889999999999999999 8999999975
|
|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-06 Score=84.51 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=55.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHH
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKE 127 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~ 127 (712)
.++++||++|++ +..++.|+..|++||+|.+ +.++.|+.+++++||+||+|++++.-..++.
T Consensus 5 ~~~KlfiGgisw------~ttee~Lr~yf~~~Gev~d--~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~ 66 (311)
T KOG4205|consen 5 ESGKLFIGGLSW------ETTEESLREYFSQFGEVTD--CVVMRDPSTGRSRGFGFVTFATPEGVDAVLN 66 (311)
T ss_pred CCcceeecCcCc------cccHHHHHHHhcccCceee--EEEeccCCCCCcccccceecCCCcchheeec
Confidence 567999999998 6668999999999999999 9999999999999999999998876666544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0025 Score=67.10 Aligned_cols=256 Identities=12% Similarity=0.055 Sum_probs=126.0
Q ss_pred CCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeE-EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 224 LGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKL-IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 224 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~-i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
++..++.++.++ +..+|.. +++.+-+....+ +.+ ... .+..++.+..+ +.|..||..+|+.+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~----------g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAE-DGKELWRAKLSSEVLSPPLV--ANGLVVVRTND----------GRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECC-CCcEeeeeccCceeecCCEE--ECCEEEEECCC----------CeEEEEEcCCCceeeE
Confidence 456666777676 7788987 666665544332 221 111 34566677777 8899999999998777
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc-C------eeeEEECC--
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-N------VMDFSWSP-- 370 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~-~------v~~~~~sp-- 370 (712)
+........ ..+.. .... . ++ .++.+. ++.+..+|..+|+.+........ + +..+.-+|
T Consensus 171 ~~~~~~~~~------~~~~~--sp~~-~-~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 171 YSRVTPALT------LRGSA--SPVI-A-DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred EccCCCcee------ecCCC--CCEE-E-CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 654432210 00000 1122 2 33 444444 78999999988876654322111 0 00111111
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
.+..+.+ ++. ...++.++..+.+.+-...... ... ....+..++++..++. +..++....
T Consensus 240 ~~~~vy~-----~~~--~g~l~a~d~~tG~~~W~~~~~~--~~~--p~~~~~~vyv~~~~G~---------l~~~d~~tG 299 (377)
T TIGR03300 240 DGGQVYA-----VSY--QGRVAALDLRSGRVLWKRDASS--YQG--PAVDDNRLYVTDADGV---------VVALDRRSG 299 (377)
T ss_pred ECCEEEE-----EEc--CCEEEEEECCCCcEEEeeccCC--ccC--ceEeCCEEEEECCCCe---------EEEEECCCC
Confidence 1334443 112 2346666665554332222111 011 1224556666554443 233332211
Q ss_pred CcceeEE-EecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCce-eEEEEccCCCe
Q 005140 451 DIPIEVL-ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA-NALFWSPSGRF 526 (712)
Q Consensus 451 ~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v-~~l~~spdg~~ 526 (712)
. ..-.. .+. .....+... .+.++++++.++ .|.+++..+++ .+..+. ...+ .+..+. ++ .
T Consensus 300 ~-~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G---~l~~~d~~tG~------~~~~~~~~~~~~~~sp~~~-~~-~ 363 (377)
T TIGR03300 300 S-ELWKNDELK--YRQLTAPAV--VGGYLVVGDFEG---YLHWLSREDGS------FVARLKTDGSGIASPPVVV-GD-G 363 (377)
T ss_pred c-EEEcccccc--CCccccCEE--ECCEEEEEeCCC---EEEEEECCCCC------EEEEEEcCCCccccCCEEE-CC-E
Confidence 1 10000 110 111112222 467888888888 89999987665 333333 2222 223332 33 4
Q ss_pred EEEEeccCCCceEEEE
Q 005140 527 IVLAGLKGFNGQLEFY 542 (712)
Q Consensus 527 l~~~~~~~~dg~v~iw 542 (712)
|++++. ||.|+.|
T Consensus 364 l~v~~~---dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTR---DGDLYAF 376 (377)
T ss_pred EEEEeC---CceEEEe
Confidence 667776 8888765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00029 Score=73.26 Aligned_cols=92 Identities=14% Similarity=0.278 Sum_probs=66.6
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
..+|.+..+......++--.....|.+.+++|+.+.|+.|..|| +|.+||...+.. ..... .-..+.++|+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg---SiiLyD~~~~~t-----~~~ka-~~~P~~iaWH 308 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG---SIILYDTTRGVT-----LLAKA-EFIPTLIAWH 308 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC---eEEEEEcCCCee-----eeeee-cccceEEEEc
Confidence 45565554322211121114488999999999999999999999 999999865432 11111 2246889999
Q ss_pred cCCCeEEEEeccCCCceEEEEECC
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|+|..+++|+. .|.+.+||+.
T Consensus 309 p~gai~~V~s~---qGelQ~FD~A 329 (545)
T PF11768_consen 309 PDGAIFVVGSE---QGELQCFDMA 329 (545)
T ss_pred CCCcEEEEEcC---CceEEEEEee
Confidence 99999999998 8999999986
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=82.16 Aligned_cols=63 Identities=29% Similarity=0.437 Sum_probs=58.2
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+||+ |.|+ +..|.++|+++|.|.. +.+-+|- | +.|||||.|.++++|++|++.+|...+.++
T Consensus 3 sl~vg--~~v~-------e~~l~~~f~~~~~v~s--~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~ 65 (369)
T KOG0123|consen 3 SLYVG--PDVT-------EAMLFDKFSPAGPVLS--IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGK 65 (369)
T ss_pred ceecC--CcCC-------hHHHHHHhcccCCcee--EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCc
Confidence 57888 6655 8889999999999999 9999998 6 999999999999999999999999999886
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00095 Score=65.73 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=65.6
Q ss_pred eEEeecccCcceeeeecCC--CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCC
Q 005140 236 AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 312 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~ 312 (712)
+++.+.. +++...-++.. .|.+++|||... .|..++.+ ..|+|.|+.+...+..+..+...
T Consensus 175 v~~l~~~-~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~----------nkiki~dlet~~~vssy~a~~~~----- 238 (463)
T KOG1645|consen 175 VQKLESH-DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLG----------NKIKIMDLETSCVVSSYIAYNQI----- 238 (463)
T ss_pred eEEeccC-CcchhhcccccchhhhhhccCccccceeeeeccC----------ceEEEEecccceeeeheeccCCc-----
Confidence 5555555 55544433322 299999999887 67788888 89999999999988888887443
Q ss_pred CCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCC
Q 005140 313 TGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES 349 (712)
Q Consensus 313 ~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~ 349 (712)
| +++|.- |+..++.++ +|.|.|||+..
T Consensus 239 --------w-SC~wDl-de~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 239 --------W-SCCWDL-DERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred --------e-eeeecc-CCcceeEEeccCceEEEEEccC
Confidence 6 589998 776555555 89999999874
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4e-05 Score=75.15 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC-CCcccccCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG-SADEFAVGGT 313 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~-~~~~~~~~~~ 313 (712)
+.+|... .+.....+.|-. +..++||||+++|+|+..| ..|+|-....--.+..|.. |..-+.
T Consensus 134 ~di~s~~-~~~~~~~lGhvSml~dVavS~D~~~IitaDRD----------EkIRvs~ypa~f~IesfclGH~eFVS---- 198 (390)
T KOG3914|consen 134 FDILSAD-SGRCEPILGHVSMLLDVAVSPDDQFIITADRD----------EKIRVSRYPATFVIESFCLGHKEFVS---- 198 (390)
T ss_pred eeeeccc-ccCcchhhhhhhhhheeeecCCCCEEEEecCC----------ceEEEEecCcccchhhhccccHhhee----
Confidence 5588877 566666666665 9999999999999999999 8899887765555666654 544432
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
.++..+ +..|++++ |++|++||+.+|+.++.
T Consensus 199 ---------~isl~~--~~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 199 ---------TISLTD--NYLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ---------eeeecc--CceeeecCCCCcEEEEecccCCcccc
Confidence 345444 45566666 99999999999988743
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.4e-06 Score=54.69 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=33.0
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEee
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG 240 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~ 240 (712)
+...+.+|...|++++|+|++.+||+++.|+ |+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567899999999999999999999999999 88997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00047 Score=66.39 Aligned_cols=226 Identities=10% Similarity=0.163 Sum_probs=126.8
Q ss_pred CCCEEEEec-CCeEEEEEcC-Cceecccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC----ccce
Q 005140 330 KDKYFAKLG-KNMISVYETE-SFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS----KEEL 402 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~----~~~~ 402 (712)
...-+.+.+ |.+++||--. .++.-..... ...+++.+++++....|.+ +-.++. +.-+.... ...+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~v-----g~~ngt--vtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYV-----GQDNGT--VTEFALSEDFNKMTFL 107 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEE-----EEecce--EEEEEhhhhhhhcchh
Confidence 344556666 9999999644 3333322212 2235888999999888887 323333 33333221 1122
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
+....+......+.|+..-..+++.+.+.. -.|.-.+.+.......+ ....+++.+.-. +-.++.
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~----------~~~hc~e~~~~lg~Y~~---~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQ----------FAWHCTESGNRLGGYNF---ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccc----------eEEEeeccCCcccceEe---eccCCCCceeeE--EEEecc
Confidence 222222222333345555555555544433 23333332222111111 001111111101 222222
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---eeccccc
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM---ATAEHFM 557 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~---~~~~~~~ 557 (712)
..+ .|....+.... +.++.++.++ .+.+++|.|..+.|+++.. |..+.+||+...+-+ ..+|...
T Consensus 173 ~~g---qvt~lr~~~~~----~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~---d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 173 HSG---QITMLKLEQNG----CQLITTFNGHTGEVTCLKWDPGQRLLFSGAS---DHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred ccc---ceEEEEEeecC----CceEEEEcCcccceEEEEEcCCCcEEEeccc---cCceEEEeccCCcceeeeeccchhh
Confidence 233 45554443222 3477777766 6899999999999999998 999999999854333 2477788
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|..+..-+--+.+.+++. |+.|.+|+.+-.
T Consensus 243 V~~l~~~~~t~~l~S~~e-----dg~i~~w~mn~~ 272 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGE-----DGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhheeeeeccC-----CCeEEEEeccce
Confidence 888888888889999999 999999998743
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.6e-05 Score=73.11 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=108.4
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc----cCccee
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA----NTFNRL 248 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~----~~~~~~ 248 (712)
.|-.+..|.. |.++.. ..+.+-|.. ..-...|. ....|.+++|...+.++..|+.+| |...|+. +++.+.
T Consensus 218 awSlni~gyh-fs~G~s-qqv~L~nve--tg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLS-QQVLLTNVE--TGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhccceee-eccccc-ceeEEEEee--cccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 4555555554 444333 333344542 11222233 456788999999999999999999 8888876 224456
Q ss_pred eeecCCC-eeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce---eeeccCCCcccccCCCCCcCCCCcCe
Q 005140 249 MRYAHPQ-VKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV---MRDFKGSADEFAVGGTGGVAGVSWPV 323 (712)
Q Consensus 249 ~~~~~~~-v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (712)
.++.|+. |+++..-. ++++|++.+.+ |.|++||++--++ ++++.+|..... .--
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~----------gkikLyD~R~~K~~~~V~qYeGHvN~~a-----------~l~ 351 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMT----------GKIKLYDLRATKCKKSVMQYEGHVNLSA-----------YLP 351 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCc----------CceeEeeehhhhcccceeeeeccccccc-----------ccc
Confidence 6666664 88887766 78999999999 9999999976555 888888865431 111
Q ss_pred EEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 324 FRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 324 ~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+-..+ ....+++++ |-..+||.+..+.++.......
T Consensus 352 ~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 352 AHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 33445 556666677 8899999999998886654443
|
|
| >PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.3e-05 Score=56.82 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=49.1
Q ss_pred CEEEECCCCC-CCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 60 NIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 60 ~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+.++|.|||. .+. .....-|++++..+| +|.. | +.|-|+|.|.+++.|.+|.+.|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~---~~I~~RL~qLsdNCGGkVl~--v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDP---SSIKNRLRQLSDNCGGKVLS--V----------SGGTAILRFPNQEFAERAQKRMEGEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-H---HHHHHHHHHHHHTTT--EEE--------------TT-EEEEESSHHHHHHHHHHHTT--SSSS
T ss_pred cEEEEecCCCCCCH---HHHHHHHHHHhhccCCEEEE--E----------eCCEEEEEeCCHHHHHHHHHhhcccccccc
Confidence 5799999995 443 567888999999997 7765 3 236899999999999999999999888876
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 68 -kI~v~~~ 74 (90)
T PF11608_consen 68 -KISVSFS 74 (90)
T ss_dssp ---EEESS
T ss_pred -eEEEEEc
Confidence 5666554
|
Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=71.39 Aligned_cols=206 Identities=14% Similarity=0.233 Sum_probs=125.1
Q ss_pred ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 251 YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 251 ~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
+-|..+..=.+-.--+++.+++.| |.++.|.- ++ +.+..|..|...+. +++.
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlD----------Gh~KFWkK-s~isGvEfVKhFraHL~~I~-------------sl~~ 61 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLD----------GHKKFWKK-SRISGVEFVKHFRAHLGVIL-------------SLAV 61 (558)
T ss_pred hcccceeeeEeeehhheEEeeecc----------hhhhhcCC-CCccceeehhhhHHHHHHHH-------------hhhc
Confidence 345554444444556899999999 99999984 33 23455555655442 4667
Q ss_pred cCCCCCEEEEec--CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCC--eEEEEeecCCCCCCCeEEEEEecCC--c
Q 005140 327 GGGKDKYFAKLG--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPS--K 399 (712)
Q Consensus 327 s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~--~ 399 (712)
|. ++.++++.+ |..++++|+.+...+.-.. .-.++..+...+|... .|++ +.-..+.+.+++... .
T Consensus 62 S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAV------s~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 62 SY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAV------SLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred cc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEe------ecccCCCcEEECCcCCcC
Confidence 77 999998866 8999999998776653222 2334444444455432 2332 233344555555432 2
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec-CCcc-----------eeEEEecCCCCceE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE-RDIP-----------IEVLELDNKNDKII 467 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~-----------~~~~~l~~h~~~v~ 467 (712)
+....+.++......+.+++.+..+.+....+. ++-|.... -..| .....++-......
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm---------VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM---------VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred ccceecccccCceEEEEeeccccceeeccccce---------eEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence 344445555566666677777777666554444 33343331 0000 00111222356678
Q ss_pred EEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 468 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
++.|+|+|..+.+.+.|. .|+++..+++.
T Consensus 206 s~Efsp~g~qistl~~Dr---kVR~F~~KtGk 234 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNPDR---KVRGFVFKTGK 234 (558)
T ss_pred ceEEccccCcccccCccc---EEEEEEeccch
Confidence 999999999999999888 99999998775
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.4e-06 Score=87.02 Aligned_cols=213 Identities=10% Similarity=0.108 Sum_probs=131.6
Q ss_pred cCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 321 WPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 321 ~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+++++||. +.++|+.|. .|.|++|++.+|........|...|+.+.-|.+|..+++ .+.-...-.-+|+..+-
T Consensus 1104 fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt-----sss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1104 FTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT-----SSSSSSPLSALWDASST 1177 (1516)
T ss_pred eeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee-----eccccCchHHHhccccc
Confidence 34899999 999999999 999999999999988888889999999999999988876 22222222233443321
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceEEEEEeeCCCEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l 478 (712)
.-..+++.... .+.|+.....-++++.... ..+|++.....-...+. ..+.+..-+...|||+.+.+
T Consensus 1178 -~~~~Hsf~ed~--~vkFsn~~q~r~~gt~~d~---------a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1178 -GGPRHSFDEDK--AVKFSNSLQFRALGTEADD---------ALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred -cCccccccccc--eeehhhhHHHHHhcccccc---------eEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 00111111111 2234444333333333322 46777765322110000 00112333667899988766
Q ss_pred EEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCce-eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccc
Q 005140 479 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA-NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFM 557 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~ 557 (712)
. +|| .+||++... .++.+..-.+ -.=.|+|+|.-+++-+. |||+++.+++.+...-.
T Consensus 1246 l---ndG-----vLWDvR~~~------aIh~FD~ft~~~~G~FHP~g~eVIINSE--------IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1246 L---NDG-----VLWDVRIPE------AIHRFDQFTDYGGGGFHPSGNEVIINSE--------IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred e---eCc-----eeeeeccHH------HHhhhhhheecccccccCCCceEEeech--------hhhhHHHHHHhcCcccc
Confidence 4 455 489997654 3333332211 22358999999988764 89999999988766655
Q ss_pred eeeEEECCCCCEEEEE
Q 005140 558 ATDVEWDPTGRYVATA 573 (712)
Q Consensus 558 v~~~~~spdg~~l~t~ 573 (712)
-..+.|+..|..+...
T Consensus 1304 qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ceEEEeccCccchhhh
Confidence 6678899998865443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00045 Score=63.95 Aligned_cols=175 Identities=7% Similarity=0.042 Sum_probs=98.9
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEc
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s 272 (712)
.|+....-.+...+.+|+.+-.+-+.|--++.++++..+| +.+.+.+..++...+.. |.+-.+.+.-..+..|.++.
T Consensus 72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~ 151 (319)
T KOG4714|consen 72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG 151 (319)
T ss_pred hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCC
Confidence 5666555567777788888877778888889999999999 67888872222222221 22233333444555555543
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCc
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESF 350 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~ 350 (712)
-..... .+..++|+++..+ ++....... .+ -++++-.| ..+ .+++++ +|.+.+||....
T Consensus 152 ~g~~n~-----~d~~~a~~~~p~~---t~~~~~~~~--------~~--v~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~ 212 (319)
T KOG4714|consen 152 CGNWNA-----QDNFYANTLDPIK---TLIPSKKAL--------DA--VTALCSHP-AQQHLVCCGTDDGIVGLWDARNV 212 (319)
T ss_pred cceEee-----ccceeeecccccc---ccccccccc--------cc--chhhhCCc-ccccEEEEecCCCeEEEEEcccc
Confidence 320000 0234455543222 222111110 00 11456666 554 445555 999999999866
Q ss_pred eecc-cccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEec
Q 005140 351 TLID-KKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 351 ~~~~-~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
.... .+..|...+..+.|+|. +..|.+ ++.++ .+|.|+.
T Consensus 213 ~~p~S~l~ahk~~i~eV~FHpk~p~~Lft-----~sedG--slw~wda 253 (319)
T KOG4714|consen 213 AMPVSLLKAHKAEIWEVHFHPKNPEHLFT-----CSEDG--SLWHWDA 253 (319)
T ss_pred cchHHHHHHhhhhhhheeccCCCchheeE-----ecCCC--cEEEEcC
Confidence 4332 23456677999999997 456666 44444 4666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00097 Score=70.22 Aligned_cols=201 Identities=15% Similarity=0.230 Sum_probs=99.3
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
...++++|+|+++++. +++...|+ ... ..+. ........+.|.+.+++ |+...... +
T Consensus 35 p~~ls~npngr~v~V~------g~geY~iy--t~~---~~r~--k~~G~g~~~vw~~~n~y-Av~~~~~~---------I 91 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC------GDGEYEIY--TAL---AWRN--KAFGSGLSFVWSSRNRY-AVLESSST---------I 91 (443)
T ss_dssp -SEEEE-TTSSEEEEE------ETTEEEEE--ETT---TTEE--EEEEE-SEEEE-TSSEE-EEE-TTS----------E
T ss_pred CeeEEECCCCCEEEEE------cCCEEEEE--Ecc---CCcc--cccCceeEEEEecCccE-EEEECCCe---------E
Confidence 6889999999999982 34443333 211 1122 22344556789996664 44433333 4
Q ss_pred EEEE-EecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 443 ELFR-IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 443 ~l~~-l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
.++. +.+. ....+.+ ...+..+-- |..|++.+.+ .|.+||+.++. .+..+.-.++..+.||
T Consensus 92 ~I~kn~~~~--~~k~i~~---~~~~~~If~---G~LL~~~~~~----~i~~yDw~~~~------~i~~i~v~~vk~V~Ws 153 (443)
T PF04053_consen 92 KIYKNFKNE--VVKSIKL---PFSVEKIFG---GNLLGVKSSD----FICFYDWETGK------LIRRIDVSAVKYVIWS 153 (443)
T ss_dssp EEEETTEE---TT--------SS-EEEEE----SSSEEEEETT----EEEEE-TTT--------EEEEESS-E-EEEEE-
T ss_pred EEEEcCccc--cceEEcC---CcccceEEc---CcEEEEECCC----CEEEEEhhHcc------eeeEEecCCCcEEEEE
Confidence 5542 1111 1112233 222333322 8888777653 59999997765 7888876678999999
Q ss_pred cCCCeEEEEeccCCCceEEEEECCcc-----------eeeee-cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVDEL-----------ETMAT-AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~~~-----------~~~~~-~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
++|.+++..+ +..+.|++.+.- ..+.. .. ...|.+.+|.-| .++..+. +.++. =
T Consensus 154 ~~g~~val~t----~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~------~~lkY-l 220 (443)
T PF04053_consen 154 DDGELVALVT----KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS------NHLKY-L 220 (443)
T ss_dssp TTSSEEEEE-----S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T------TEEEE-E
T ss_pred CCCCEEEEEe----CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC------CeEEE-E
Confidence 9999999998 567888776532 02222 22 467889999877 4555544 35555 3
Q ss_pred ecCceeeeecc-cceeeeEEecCCCCCCCh
Q 005140 589 FNGKLLYRTLK-DHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 589 ~~g~~~~~~~~-~~i~~~~w~p~~~~l~s~ 617 (712)
+.|..-.-.+. .+++=+...|+...++..
T Consensus 221 ~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~ 250 (443)
T PF04053_consen 221 VNGETGIIAHLDKPLYLLGYLPKENRLYLI 250 (443)
T ss_dssp ETTEEEEEEE-SS--EEEEEETTTTEEEEE
T ss_pred EcCCcceEEEcCCceEEEEEEccCCEEEEE
Confidence 33432222222 345555566644444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0032 Score=61.41 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=49.0
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCC
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN 340 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~ 340 (712)
..+++.++++++.+ +.|..||..+|+.+..+....... . .. ... ++..++...++
T Consensus 32 ~~~~~~~v~~~~~~----------~~l~~~d~~tG~~~W~~~~~~~~~------------~-~~-~~~-~~~v~v~~~~~ 86 (238)
T PF13360_consen 32 AVPDGGRVYVASGD----------GNLYALDAKTGKVLWRFDLPGPIS------------G-AP-VVD-GGRVYVGTSDG 86 (238)
T ss_dssp EEEETTEEEEEETT----------SEEEEEETTTSEEEEEEECSSCGG------------S-GE-EEE-TTEEEEEETTS
T ss_pred EEEeCCEEEEEcCC----------CEEEEEECCCCCEEEEeecccccc------------c-ee-eec-cccccccccee
Confidence 34467777777777 899999999999988877643322 0 12 222 44555555588
Q ss_pred eEEEEEcCCceeccc
Q 005140 341 MISVYETESFTLIDK 355 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~ 355 (712)
.+..+|..+|+.+..
T Consensus 87 ~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 87 SLYALDAKTGKVLWS 101 (238)
T ss_dssp EEEEEETTTSCEEEE
T ss_pred eeEecccCCcceeee
Confidence 999999999988765
|
... |
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=76.83 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=62.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
...+|||++||. +..+.+|+..|.+||.|.. +.+++|..+++.+||+||.|.+.+...+++.. ....|.++
T Consensus 96 ~tkkiFvGG~~~------~~~e~~~r~yfe~~g~v~~--~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk 166 (311)
T KOG4205|consen 96 RTKKIFVGGLPP------DTTEEDFKDYFEQFGKVAD--VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGK 166 (311)
T ss_pred ceeEEEecCcCC------CCchHHHhhhhhccceeEe--eEEeecccccccccceeeEeccccccceeccc-ceeeecCc
Confidence 456999999998 5559999999999999999 99999999999999999999998887777552 33344442
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|.+.
T Consensus 167 -~vevkrA 173 (311)
T KOG4205|consen 167 -KVEVKRA 173 (311)
T ss_pred -eeeEeec
Confidence 4445443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.7e-05 Score=75.62 Aligned_cols=170 Identities=7% Similarity=0.088 Sum_probs=110.1
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc------eeeee-cCC-CeeEEEecCCCCEEEEEcCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN------RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHE 275 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~------~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~ 275 (712)
....|.+|+..|+.++--.+.+-+++++.|+ |++|.+...+. ...++ .|. .|.++.|-.+-++++++..
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~-- 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDG-- 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccC--
Confidence 3446789999998887666777788999888 88998753222 22333 243 5999999999999998764
Q ss_pred CCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEE-EEec-CCeEEEEEcCCcee
Q 005140 276 PSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYF-AKLG-KNMISVYETESFTL 352 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~l-a~~~-d~~i~iwd~~~~~~ 352 (712)
.|.+||.--|+++.......... .+. .+..-++ +...+ |.++ ..+++++|...+..
T Consensus 805 ----------giHlWDPFigr~Laq~~dapk~~------a~~-----~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 805 ----------GIHLWDPFIGRLLAQMEDAPKEG------AGG-----NIKCLENVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred ----------cceeecccccchhHhhhcCcccC------CCc-----eeEecccCcchheeeeccchhhheeeecccccc
Confidence 48999987777766443221111 000 1222331 23333 3335 88999999987765
Q ss_pred cccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 353 IDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 353 ~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
...... ...-+.+++..|.|+.++. +-..+.|.+++..+++.+..
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa-------~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVADKGNKLAA-------ALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred eeeEEeccCCCCchheeEEEeccCcchhhH-------HhcCCcEEEEecCCCceecc
Confidence 443322 2334889999999999987 33344566677666665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0024 Score=69.11 Aligned_cols=192 Identities=14% Similarity=0.143 Sum_probs=116.7
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEe
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKL 337 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~ 337 (712)
-+|++.+..+|.|+.+ |.|.+.+ ..-+.++.|+.+...+. .+-|.- ++ .+|++.
T Consensus 29 sc~~s~~~~vvigt~~----------G~V~~Ln-~s~~~~~~fqa~~~siv-------------~~L~~~-~~~~~L~sv 83 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTAD----------GRVVILN-SSFQLIRGFQAYEQSIV-------------QFLYIL-NKQNFLFSV 83 (933)
T ss_pred eEEcCCCceEEEeecc----------ccEEEec-ccceeeehheecchhhh-------------hHhhcc-cCceEEEEE
Confidence 3578889999999999 8877776 34455588888766521 234454 44 577777
Q ss_pred c-C-C----eEEEEEcCCce------ec---cccc----ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC-
Q 005140 338 G-K-N----MISVYETESFT------LI---DKKS----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP- 397 (712)
Q Consensus 338 ~-d-~----~i~iwd~~~~~------~~---~~~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~- 397 (712)
+ | + .++||+++.-. .+ .... ....++.+++.|.+-+.+|+ |-.+|. |..+...
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~-----Gf~nG~--V~~~~GDi 156 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC-----GFTNGL--VICYKGDI 156 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE-----EecCcE--EEEEcCcc
Confidence 7 3 3 58999987331 11 0011 11234788899998888888 445554 4444332
Q ss_pred -Cccceeee--eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 398 -SKEELRQK--NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 398 -~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
..+..+.. .....++..+.+..+|+.+++.+.... +.+|.+..++ | ....+..|..++.|-++++.
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~---------V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ---------VMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecce---------eEEEEecCCC-c-ceeeeccCCccceeeecCCC
Confidence 21111111 112345556677777776443333322 6888888555 3 22336567788888888876
Q ss_pred CCEEEEEEcCCCCCeEEEEEeec
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
...|++++.. .|.+|+.+.
T Consensus 226 t~qfIca~~e----~l~fY~sd~ 244 (933)
T KOG2114|consen 226 TYQFICAGSE----FLYFYDSDG 244 (933)
T ss_pred CccEEEecCc----eEEEEcCCC
Confidence 6546655554 599999864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00086 Score=71.83 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=107.4
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..++|++++ +++||.|..+| +.+.+..++. ...+.|... ..+|.|++||+.| |.|.|-.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~D----------Gkv~I~sl 100 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDD----------GKVVIGSL 100 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCC----------CcEEEeec
Confidence 567788887 78999999998 7798887332 333334333 5689999999999 99999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-----CCEEEEec-CCeEEEEEcCCceecccccc--cccCee
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-----DKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVM 364 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-----g~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~ 364 (712)
.+.+...++..+.... +++++| + .+.+++++ .| +.++.-.=.+-.....+ ..+.|.
T Consensus 101 ~~~~~~~~~df~rpik--------------sial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 101 FTDDEITQYDFKRPIK--------------SIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred cCCccceeEecCCcce--------------eEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence 8888777666555443 578888 6 45677787 55 77776442111111112 234599
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee------eeecceeEEECcCCCEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL------FSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~l~ 425 (712)
++.|. |++||. ++.. -|.+|+.+.++.+..... .....+.+.|.++.+.++
T Consensus 165 ~i~W~--g~lIAW-----and~---Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 165 SIKWR--GNLIAW-----ANDD---GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred EEEec--CcEEEE-----ecCC---CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 99996 677775 2222 245667766654433221 122345678888766543
|
|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.9e-05 Score=80.43 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+++|||++||. ...|.+|..+|+.||+|.+ |.|.- ++|.|||.+..+.+|.+|+.+|+.+.+.++
T Consensus 420 ~SrTLwvG~i~k------~v~e~dL~~~feefGeiqS--i~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPK------NVTEQDLANLFEEFGEIQS--IILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeeeeccccc------hhhHHHHHHHHHhccccee--Eeecc------CCceeEEEEeehhHHHHHHHHHhcccccce
Confidence 689999999997 5569999999999999999 76653 679999999999999999999999998875
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
++++..
T Consensus 486 -~Iki~W 491 (894)
T KOG0132|consen 486 -TIKIAW 491 (894)
T ss_pred -eeEEee
Confidence 665554
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.9e-05 Score=73.50 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+.++.|+||.... ....|+..|.+||.|.+ +.+.. +|+||-|.-.++|..|++.|||..++|+
T Consensus 77 ~stkl~vgNis~tc------tn~ElRa~fe~ygpvie--cdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTC------TNQELRAKFEKYGPVIE--CDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred CccccccCCCCccc------cCHHHhhhhcccCCcee--eeeec--------ceeEEEEeeccchHHHHhcccccccccc
Confidence 57899999999633 36789999999999999 87765 4999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|-.-
T Consensus 141 -~m~vq~s 147 (346)
T KOG0109|consen 141 -RMHVQLS 147 (346)
T ss_pred -eeeeeee
Confidence 5665543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.013 Score=57.14 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=58.6
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCc----------eeEEEEccCCCeEEEEeccCCCceEEE
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQ----------ANALFWSPSGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~----------v~~l~~spdg~~l~~~~~~~~dg~v~i 541 (712)
.++.++++..++ .|..+|++++.. +... .... +..-....++ .+++++. ++.+.-
T Consensus 121 ~~~~~~~~~~~g---~l~~~d~~tG~~------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~---~g~~~~ 187 (238)
T PF13360_consen 121 DGDRLYVGTSSG---KLVALDPKTGKL------LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG---DGRVVA 187 (238)
T ss_dssp ETTEEEEEETCS---EEEEEETTTTEE------EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC---TSSEEE
T ss_pred ecCEEEEEeccC---cEEEEecCCCcE------EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC---CCeEEE
Confidence 477787777766 788888876652 2222 1111 1122222345 6666555 665333
Q ss_pred EECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 542 YNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 542 wd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+|+.+++.+-......+.. ...+++..|+.++. ++.+..||+..
T Consensus 188 ~d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~-----~~~l~~~d~~t 231 (238)
T PF13360_consen 188 VDLATGEKLWSKPISGIYS-LPSVDGGTLYVTSS-----DGRLYALDLKT 231 (238)
T ss_dssp EETTTTEEEEEECSS-ECE-CEECCCTEEEEEET-----TTEEEEEETTT
T ss_pred EECCCCCEEEEecCCCccC-CceeeCCEEEEEeC-----CCEEEEEECCC
Confidence 4999988664333222222 24577788888887 89999999873
|
... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0048 Score=65.43 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=83.5
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
|...+..-+++..++||+.|+..| +.+|+-.+...++... .+..+..+..|++..++|.|+.. |.|.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~----------g~V~ 101 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTAS----------GRVS 101 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCC----------ceEE
Confidence 345566678888999999999999 7788887444444444 34447778899999999999988 9999
Q ss_pred EEEccCCce-----eeeccC-CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC
Q 005140 289 IFDVRTGKV-----MRDFKG-SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 289 iwd~~~g~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~ 349 (712)
++-+..+.. ++.+.. |...++ ++.|++ |+..+.+|. .|.|..-.+++
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVT-------------al~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVT-------------ALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEE-------------EEEecc-cccEEeecCCCceEEEEEech
Confidence 998765432 111111 223332 899999 999999999 89998888776
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0065 Score=58.53 Aligned_cols=190 Identities=15% Similarity=0.226 Sum_probs=105.1
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.+..|+|+|+.+.|++....+ +.|..++. +|+.++.+......- .-.+++.. ++.|+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~---------~~i~els~-~G~vlr~i~l~g~~D------------~EgI~y~g-~~~~v 79 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEP---------GEIYELSL-DGKVLRRIPLDGFGD------------YEGITYLG-NGRYV 79 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTT---------TEEEEEET-T--EEEEEE-SS-SS------------EEEEEE-S-TTEEE
T ss_pred CccccEEcCCCCeEEEEECCC---------CEEEEEcC-CCCEEEEEeCCCCCC------------ceeEEEEC-CCEEE
Confidence 499999999877666555442 77888885 688888775442110 11578888 88888
Q ss_pred EEec-CCeEEEEEcCCce-ec-----cccc-----ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC--Ccc
Q 005140 335 AKLG-KNMISVYETESFT-LI-----DKKS-----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP--SKE 400 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~-~~-----~~~~-----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~--~~~ 400 (712)
++.. ++.+.++++.... .+ .... .+..++-.++|.|.++.|.+ +....+..|+-++.. ...
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-----~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-----AKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-----EEESSSEEEEEEESTT-SS-
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-----EeCCCChhhEEEccccCccc
Confidence 8776 8999999884321 11 1111 12345889999999877776 334566677777651 111
Q ss_pred -------ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-------CCce
Q 005140 401 -------ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-------NDKI 466 (712)
Q Consensus 401 -------~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-------~~~v 466 (712)
.+.....+......++++|....|++.++... .|..++..+.+...+.|... -...
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~----------~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR----------LLLELDRQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT----------EEEEE-TT--EEEEEE-STTGGG-SS---SE
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCC----------eEEEECCCCCEEEEEEeCCcccCcccccCCc
Confidence 01111122223345677888888877777655 67777777777777777431 1257
Q ss_pred EEEEEeeCCCEEEEEEc
Q 005140 467 IAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~ 483 (712)
-.+++.|+|+.+++ +.
T Consensus 225 EGIa~d~~G~LYIv-sE 240 (248)
T PF06977_consen 225 EGIAFDPDGNLYIV-SE 240 (248)
T ss_dssp EEEEE-TT--EEEE-ET
T ss_pred cEEEECCCCCEEEE-cC
Confidence 78999999865544 44
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=48.34 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=32.5
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
..+.+|...|.+++|+|++.+|++++.|+ .|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~---~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDG---TIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTS---EEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCC---EEEEEC
Confidence 45678999999999999999999999999 999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0086 Score=56.68 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=89.8
Q ss_pred ceEEEcCCC-cEEEEEecCc--eEEeecccCcceeeeecCC-C---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 217 SFVQWSPLG-TYLATVHRQG--AAVWGGANTFNRLMRYAHP-Q---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 217 ~~v~~Spdg-~~lat~~~~~--i~iw~~~~~~~~~~~~~~~-~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
..++|+|.- .-++++-..| ..++|.. +.+........ + --.=.|||||.+|...-.| -+.+.|.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~-~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd-----fd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPN-GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND-----FDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCC-CCcCcEEEecccCceeecccccCCCCcEEEeecCC-----CCCCCceEEE
Confidence 347899864 5577777777 4589988 55544444322 1 2234699999999877666 2445589999
Q ss_pred EEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCC-------------------eEEEEEcCC
Q 005140 290 FDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN-------------------MISVYETES 349 (712)
Q Consensus 290 wd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~-------------------~i~iwd~~~ 349 (712)
||.+.+ ..+..+..+..... .+.|.+ ||..++....| ++.+.+..+
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpH-------------ev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPH-------------EVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred EecccccceecccccCCcCcc-------------eeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 998644 33555655543221 588999 99998876521 244555566
Q ss_pred ceeccccccc----ccCeeeEEECCCCCeEEE
Q 005140 350 FTLIDKKSLK----VENVMDFSWSPTDPIISL 377 (712)
Q Consensus 350 ~~~~~~~~~~----~~~v~~~~~sp~~~~la~ 377 (712)
|.++.+..+. .-.+..++..+||..++-
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 6666655433 234677777777766553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.013 Score=61.88 Aligned_cols=142 Identities=14% Similarity=0.182 Sum_probs=79.6
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
....++++|+|++++.++...-.|+... ....... ..-....|++.++|.+. ... .+|.|+.--+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k~~---G~g~~~vw~~~n~yAv~-~~~----------~~I~I~kn~~ 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNKAF---GSGLSFVWSSRNRYAVL-ESS----------STIKIYKNFK 98 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETT-TTEEEEE---EE-SEEEE-TSSEEEEE--TT----------S-EEEEETTE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccccc---CceeEEEEecCccEEEE-ECC----------CeEEEEEcCc
Confidence 3577999999999999665556677754 3333222 23567889997775544 435 6788874223
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
....+.+..+... -..- .|.+|+..+++.|.+||..+++.+... ...+|..+.||++|.+
T Consensus 99 ~~~~k~i~~~~~~----------------~~If--~G~LL~~~~~~~i~~yDw~~~~~i~~i--~v~~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 99 NEVVKSIKLPFSV----------------EKIF--GGNLLGVKSSDFICFYDWETGKLIRRI--DVSAVKYVIWSDDGEL 158 (443)
T ss_dssp E-TT-----SS-E----------------EEEE---SSSEEEEETTEEEEE-TTT--EEEEE--SS-E-EEEEE-TTSSE
T ss_pred cccceEEcCCccc----------------ceEE--cCcEEEEECCCCEEEEEhhHcceeeEE--ecCCCcEEEEECCCCE
Confidence 3332334333211 0111 367888888789999999999888654 3445899999999999
Q ss_pred EEEEeecCCCCCCCeEEEEEecC
Q 005140 375 ISLFVPELGGGNQPARVSLVQIP 397 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~ 397 (712)
++.. ......|..++..
T Consensus 159 val~------t~~~i~il~~~~~ 175 (443)
T PF04053_consen 159 VALV------TKDSIYILKYNLE 175 (443)
T ss_dssp EEEE-------S-SEEEEEE-HH
T ss_pred EEEE------eCCeEEEEEecch
Confidence 9984 3456667777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.045 Score=57.95 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=55.4
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~ 553 (712)
.+..+++++.++ .+..+|..++... +. ...+......+... .+.+|++++. +|.|+++|..+++.+...
T Consensus 293 ~~~~vy~~~~~g---~l~ald~~tG~~~--W~-~~~~~~~~~~sp~v--~~g~l~v~~~---~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 293 DGGRIYLVDQND---RVYALDTRGGVEL--WS-QSDLLHRLLTAPVL--YNGYLVVGDS---EGYLHWINREDGRFVAQQ 361 (394)
T ss_pred ECCEEEEEcCCC---eEEEEECCCCcEE--Ec-ccccCCCcccCCEE--ECCEEEEEeC---CCEEEEEECCCCCEEEEE
Confidence 466777777777 7888888665421 00 00111111222222 2456777776 999999999999887653
Q ss_pred cc--ccee-eEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 554 EH--FMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 554 ~~--~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
.. ..+. .... .+..|+.++. +|.++.++
T Consensus 362 ~~~~~~~~s~P~~--~~~~l~v~t~-----~G~l~~~~ 392 (394)
T PRK11138 362 KVDSSGFLSEPVV--ADDKLLIQAR-----DGTVYAIT 392 (394)
T ss_pred EcCCCcceeCCEE--ECCEEEEEeC-----CceEEEEe
Confidence 22 2222 2222 2346777777 77776654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=69.74 Aligned_cols=129 Identities=17% Similarity=0.302 Sum_probs=85.9
Q ss_pred cCCCcEEEEEecCc-eEEeecccCcceeeeecC-CCeeEEEecCC-----CCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 222 SPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH-PQVKLIDFSPG-----EKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 222 Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~-~~v~~i~~Spd-----g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
.-+|.|+||++.|| +.|-.+- +.+...++.. ..+.+++++|+ .+.+++|+.. | +.++.-.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~-~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~a----------g-lvL~er~- 146 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLF-TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMA----------G-LVLSERN- 146 (846)
T ss_pred ccCCceEEEecCCCcEEEeecc-CCccceeEecCCcceeEEeccchhhhhhhheeecCcc----------e-EEEehhh-
Confidence 45799999999999 7777776 6666666653 45999999998 5678888887 7 6666421
Q ss_pred CceeeeccCCCcc-cccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccC------eeeEE
Q 005140 295 GKVMRDFKGSADE-FAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVEN------VMDFS 367 (712)
Q Consensus 295 g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~------v~~~~ 367 (712)
+-+.... +.....+.+. ++.| .|++||-++|-.|+|||+.+.+.+......... -..+.
T Consensus 147 ------wlgnk~~v~l~~~eG~I~-----~i~W---~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~ 212 (846)
T KOG2066|consen 147 ------WLGNKDSVVLSEGEGPIH-----SIKW---RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLH 212 (846)
T ss_pred ------hhcCccceeeecCccceE-----EEEe---cCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceE
Confidence 1111111 1111222233 4677 568999999989999999988766543322222 34678
Q ss_pred ECCCCCeEEE
Q 005140 368 WSPTDPIISL 377 (712)
Q Consensus 368 ~sp~~~~la~ 377 (712)
|.+..+.+.-
T Consensus 213 W~~~~~LVIG 222 (846)
T KOG2066|consen 213 WQDEDRLVIG 222 (846)
T ss_pred ecCCCeEEEe
Confidence 8888777764
|
|
| >KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.7e-05 Score=70.92 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=64.5
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-...+||+|+-. ++ -..+...|+.+|.|.. +.||.|+.+|.+||||||+|.+.+.+.+|+. |||..+.+
T Consensus 100 d~~sv~v~nvd~~~t-------~~~~e~hf~~Cg~i~~--~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~ 169 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVT-------LTKIELHFESCGGINR--VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG 169 (231)
T ss_pred CCceEEEeccccccc-------cchhhheeeccCCccc--eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc
Confidence 356899999995 33 2238899999999988 9999999999999999999999999999999 99999988
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
. .+.|..
T Consensus 170 ~-~i~vt~ 176 (231)
T KOG4209|consen 170 P-AIEVTL 176 (231)
T ss_pred c-cceeee
Confidence 6 444444
|
|
| >KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.1e-05 Score=69.06 Aligned_cols=69 Identities=17% Similarity=0.365 Sum_probs=62.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+.+|||.|+-. .+.|+.|.++|-+.|.|.+ +.||.++ .++.| ||||+|.++-....|++.+||..+.+.
T Consensus 9 drtl~v~n~~~------~v~eelL~ElfiqaGPV~k--v~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 9 DRTLLVQNMYS------GVSEELLSELFIQAGPVYK--VGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred hhHHHHHhhhh------hhhHHHHHHHhhccCceEE--EeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 45899999996 5668889999999999999 9999998 77888 999999999999999999999888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.013 Score=64.39 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=111.4
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecC-CCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPEL-GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
+|.+.-.+-.....+.........+...+.||+|..+++..... ...+....||+.+..... .... .........|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt-~g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL-EGHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee-cCCCCCCceE
Confidence 66665443222222222222334578899999999998754211 013455688888753221 1111 1123456789
Q ss_pred CcCCCEEEEEEcccccc-cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKT-KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|+|..|++..+..... .......-.+|.+...+..... .+ .+.|.++.|||||.++++... + .|.+--+.
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~---~g~Issl~wSpDG~RiA~i~~-g---~v~Va~Vv 476 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RV---PGPISELQLSRDGVRAAMIIG-G---KVYLAVVE 476 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-cc---CCCcCeEEECCCCCEEEEEEC-C---EEEEEEEE
Confidence 99999988876542200 0000011234433322211111 22 567999999999999999874 4 67764443
Q ss_pred c-ccccCceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-ec--cccceeeEEECC
Q 005140 497 T-AQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TA--EHFMATDVEWDP 565 (712)
Q Consensus 497 ~-~~~~~~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~--~~~~v~~~~~sp 565 (712)
. ..+..++.....+. ...+.++.|.+++..+ ++..+. +..+...+++...... .. ....+..++=++
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~-~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDP-EHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCC-CCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 2 12211121112222 2235789999999865 444322 4456556666332211 11 235566666665
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0019 Score=59.89 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=53.4
Q ss_pred ceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEcc-CCCeEEEEeccCCCceEE
Q 005140 465 KIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSP-SGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 465 ~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~ 540 (712)
.|.+++-+|..+ .+++++.+| .+.+||++.... +...+. ..+++.+-|+| ++..|++++. ||.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg---~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft~se---dGslw 249 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDG---IVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSE---DGSLW 249 (319)
T ss_pred cchhhhCCcccccEEEEecCCC---eEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeEecC---CCcEE
Confidence 488999999655 455556677 899999976532 333333 33789999999 5678999988 99999
Q ss_pred EEECCc
Q 005140 541 FYNVDE 546 (712)
Q Consensus 541 iwd~~~ 546 (712)
-||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999884
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.082 Score=55.85 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=42.1
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEEECCCCCEEEEE
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~ 573 (712)
+++..++.||+|++||.-.. +|.+.+.+.+-.+.+.. ........+.|.-+...++..
T Consensus 217 ~~i~~iavSpng~~iAl~t~---~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTD---SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred CCeEEEEECCCCCEEEEEEC---CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe
Confidence 57899999999999999887 89999988764444433 223466678888776544444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=5.4e-05 Score=78.35 Aligned_cols=77 Identities=27% Similarity=0.424 Sum_probs=66.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
...|+|+|||. ..++..++++...||.+.. ..+..|..+|.+|||||.+|-++.....|+..|||+.+.++
T Consensus 289 ~~ki~v~~lp~------~l~~~q~~Ell~~fg~lk~--f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~- 359 (500)
T KOG0120|consen 289 PNKIFVGGLPL------YLTEDQVKELLDSFGPLKA--FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK- 359 (500)
T ss_pred cchhhhccCcC------ccCHHHHHHHHHhcccchh--heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc-
Confidence 36899999996 3347888999999999988 88999999999999999999999999999999999999876
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|-.
T Consensus 360 ~lvvq~ 365 (500)
T KOG0120|consen 360 KLVVQR 365 (500)
T ss_pred eeEeeh
Confidence 444443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=71.62 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=82.6
Q ss_pred CcEEEEEe-cCceEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVH-RQGAAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~-~~~i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+..++.|+ .+.++.+|.. +.+.....+ .++|.-+. .++++|.+|... |+|.+-|..+.+.+++|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~-~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~----------G~V~LrD~~s~~~iht~ 213 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLN-TEKETRTTNVSASGVTIMR--YNNRNLFCGDTR----------GTVFLRDPNSFETIHTF 213 (1118)
T ss_pred Ccceeecchhhheeeeecc-cceeeeeeeccCCceEEEE--ecCcEEEeeccc----------ceEEeecCCcCceeeee
Confidence 33444444 4447788887 555555444 33444444 468899999988 99999999999999999
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------CeEEEEEcCCceecccccccccCeeeEEECCC
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------NMISVYETESFTLIDKKSLKVENVMDFSWSPT 371 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (712)
..|.+.+ ..|.- .|+.|++++ . .-|+|||+...+.+....++.++ .-+.|.|.
T Consensus 214 ~aHs~si---------------SDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Ps 276 (1118)
T KOG1275|consen 214 DAHSGSI---------------SDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPS 276 (1118)
T ss_pred eccccce---------------eeeec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccc
Confidence 9998876 46666 788888886 2 34889999988877655555443 44556665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.032 Score=53.47 Aligned_cols=167 Identities=15% Similarity=0.265 Sum_probs=108.1
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
+.++.+++|+|+.+.|++.... ..-.||=..+|+.+++++... +.- .+.|.. +
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~----------p~~iVElt~~GdlirtiPL~g~~DpE--------------~Ieyig-~ 139 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNK----------PAAIVELTKEGDLIRTIPLTGFSDPE--------------TIEYIG-G 139 (316)
T ss_pred cccccceeeCCCcceEEEecCC----------CceEEEEecCCceEEEecccccCChh--------------HeEEec-C
Confidence 3459999999999999888776 344466567899999876543 222 578888 8
Q ss_pred CCEEEEec-CCeEEEEEcCCce-ecc---------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 331 DKYFAKLG-KNMISVYETESFT-LID---------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~-~~~---------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
|+|.++-- ++.+.++.+.... .+. .......+...++|.|.+..|.+ +..-.+..|+.++....
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-----aKEr~P~~I~~~~~~~~ 214 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-----AKERNPIGIFEVTQSPS 214 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-----EEccCCcEEEEEecCCc
Confidence 88877776 8888888766432 111 11112446789999999988887 44667888888874331
Q ss_pred c--------ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 400 E--------ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 400 ~--------~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
. +-....++-.+...+.+++....|++-++... .+..++..+.++..+.+
T Consensus 215 ~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr----------~l~Evd~~G~~~~~lsL 272 (316)
T COG3204 215 SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR----------RLLEVDLSGEVIELLSL 272 (316)
T ss_pred ccccccccCcccccceEeeccccceecCCCCcEEEEecCCc----------eEEEEecCCCeeeeEEe
Confidence 1 11122233344445677877777777666543 45555555555555555
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.013 Score=62.29 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=80.7
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
+..|.--+++..++||+.|+.. |.+.+|+-..|+. +.++. .....+ ....|+ +
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~----------G~lyl~~R~~~~~-~~~~~~~~~~~~~-------------~~~vs~-~ 87 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSA----------GSVYLYNRHTGEM-RKLKNEGATGITC-------------VRSVSS-V 87 (726)
T ss_pred cceEEEEEeecCCceEEEeccc----------ceEEEEecCchhh-hcccccCccceEE-------------EEEecc-h
Confidence 3447788889999999999999 9999999655543 33332 222221 467788 8
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccc------cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKK------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+.++|.++ .|.|.++-+.....-... ..|...|++++|++++..+.+ +|..++|....+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-------GD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS-------GDSQGKVVLTELDS 155 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEee-------cCCCceEEEEEech
Confidence 88888888 889999987753221111 113446999999999999998 77777777766655
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.076 Score=60.10 Aligned_cols=249 Identities=11% Similarity=0.097 Sum_probs=122.3
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+..+.|||||++|+.+... .+.....|++.|+.+|..+........ . .++|++ |++.|+
T Consensus 129 l~~~~~Spdg~~la~~~d~-----~G~E~~~l~v~d~~tg~~l~~~i~~~~-~--------------~~~w~~-D~~~~~ 187 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF-----LSRRQYGIRFRNLETGNWYPELLDNVE-P--------------SFVWAN-DSWTFY 187 (686)
T ss_pred EeEEEECCCCCEEEEEecC-----CCcEEEEEEEEECCCCCCCCccccCcc-e--------------EEEEee-CCCEEE
Confidence 6788999999999877544 222236789999988864322111111 1 589999 998776
Q ss_pred Eec--C-----CeEEEEEcCCceeccccccc--ccCee-eEEECCCCCeEEEEeecCCCCCCCeEEEEEec--CCcccee
Q 005140 336 KLG--K-----NMISVYETESFTLIDKKSLK--VENVM-DFSWSPTDPIISLFVPELGGGNQPARVSLVQI--PSKEELR 403 (712)
Q Consensus 336 ~~~--d-----~~i~iwd~~~~~~~~~~~~~--~~~v~-~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 403 (712)
... + ..|..+++.++......... ..... .+..+.+++++++... ......+++++. +......
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~----~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA----SATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE----CCccccEEEEECcCCCCCceE
Confidence 654 2 35666777665211111111 11122 3333447887765322 333345666663 2222111
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-C-CceEEEEEeeCCCEEEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-N-DKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~-~~v~~~~~sp~g~~l~~~ 481 (712)
.. .............+..+.+.++.+.. ...|+.+.... +.....+..+ . ..+..+.++ +++|++.
T Consensus 264 ~~--~~~~~~~~~~~~~~~~ly~~tn~~~~-------~~~l~~~~~~~-~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~ 331 (686)
T PRK10115 264 FL--PRRKDHEYSLDHYQHRFYLRSNRHGK-------NFGLYRTRVRD-EQQWEELIPPRENIMLEGFTLF--TDWLVVE 331 (686)
T ss_pred EE--ECCCCCEEEEEeCCCEEEEEEcCCCC-------CceEEEecCCC-cccCeEEECCCCCCEEEEEEEE--CCEEEEE
Confidence 11 01111111122234555555543221 13444444321 1111222233 2 367777776 5577776
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeC-CC--ceeEEEEc--cCCC-eEEEEeccCCCceEEEEECCcce
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--QANALFWS--PSGR-FIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--~v~~l~~s--pdg~-~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
..++....+.+++..++ .+..+. .. .+..+.++ +++. +++..+.-...+.++.+|..+++
T Consensus 332 ~~~~g~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 332 ERQRGLTSLRQINRKTR-------EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEeCCEEEEEEEcCCCC-------ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 66554445666665322 122222 11 22333445 4444 44444333347889999988654
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0007 Score=65.15 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=70.3
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeec------eEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKED------GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~------~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
......|||.|||- +++-..+.++|+++|.|.++ -|.|=.|. .|+.||=|.+.|-..++...|++.|
T Consensus 131 ~~~Nt~VYVsgLP~------DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~il 203 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPL------DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKIL 203 (382)
T ss_pred cccCceEEecCCCC------cccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHh
Confidence 34567799999997 66688899999999998764 46666776 5999999999999999999999999
Q ss_pred CCCccCCceEEEEEeec
Q 005140 130 NGYKLDRAHIFAVNMFD 146 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~ 146 (712)
|+..|.| +.++|....
T Consensus 204 De~~~rg-~~~rVerAk 219 (382)
T KOG1548|consen 204 DEDELRG-KKLRVERAK 219 (382)
T ss_pred CcccccC-cEEEEehhh
Confidence 9999987 488887643
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.081 Score=50.36 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=66.5
Q ss_pred eeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
...|+|+|.-..- +.+-.. . .-..++|..+++.+.++.......- .| .-.||| ||.+|
T Consensus 70 ~Hgi~~~p~~~ravafARrP-G--------tf~~vfD~~~~~~pv~~~s~~~RHf-------yG----HGvfs~-dG~~L 128 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRP-G--------TFAMVFDPNGAQEPVTLVSQEGRHF-------YG----HGVFSP-DGRLL 128 (366)
T ss_pred cCCeecCCCCcceEEEEecC-C--------ceEEEECCCCCcCcEEEecccCcee-------ec----ccccCC-CCcEE
Confidence 5678899976544 444433 1 2356889877776666655444321 11 347899 99999
Q ss_pred EEec------CCeEEEEEcCCc-eecccccccccCeeeEEECCCCCeEEE
Q 005140 335 AKLG------KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 335 a~~~------d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
...- -|.|-|||...+ ..+.....+.-+-..+.|.+||+.|++
T Consensus 129 YATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred EeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE
Confidence 8765 377999998732 233334444446788999999999998
|
|
| >KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00027 Score=68.00 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=56.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~~ 137 (712)
..+|||+||-. ..++.+|++.|-+||+|.. +.+... +|.|||+|.+++.|+.|.+.. |-..++|.
T Consensus 228 I~tLyIg~l~d------~v~e~dIrdhFyqyGeirs--i~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLND------EVLEQDIRDHFYQYGEIRS--IRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred eeEEEeccccc------chhHHHHHHHHhhcCCeee--EEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 46999999976 6679999999999999999 776543 369999999999999999874 54556664
Q ss_pred eEEEEE
Q 005140 138 HIFAVN 143 (712)
Q Consensus 138 ~~l~v~ 143 (712)
.+++.
T Consensus 294 -Rl~i~ 298 (377)
T KOG0153|consen 294 -RLKIK 298 (377)
T ss_pred -EEEEE
Confidence 55554
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00063 Score=69.25 Aligned_cols=259 Identities=13% Similarity=0.096 Sum_probs=137.7
Q ss_pred CCCEEEEec-CCeEEEEEcCC-ce------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 330 KDKYFAKLG-KNMISVYETES-FT------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~-~~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
+.+-+++++ |+++++|.+.. +. .......|...|.++.|-.+.+++++ .|+.+.+|.-= ..+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S-------cD~giHlWDPF--igr~ 816 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS-------CDGGIHLWDPF--IGRL 816 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-------ccCcceeeccc--ccch
Confidence 445556666 99999999862 21 22334557778999999999988887 66666665422 2222
Q ss_pred eeee----eeeeecceeEEECcCCCEEEEE-EcccccccccccccEEEEEEecCCcceeEE--EecCCCCceEEEEEeeC
Q 005140 402 LRQK----NLFSVSDCKMYWQSSGDYLAVK-VDRYTKTKKSTYTGFELFRIKERDIPIEVL--ELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 402 ~~~~----~~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~l~~h~~~v~~~~~sp~ 474 (712)
+.+. .-..+..+...-+-+...+..+ +...+ +++++.+..+...+.. ..++.+..+.+++..|.
T Consensus 817 Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST---------VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 817 LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST---------VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred hHhhhcCcccCCCceeEecccCcchheeeeccchhh---------heeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 1110 0000111111111122233332 22222 4555554432221111 12344677899999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEE-EccCCCeEEEEeccCCCceEEE-EECCcceeeee
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALF-WSPSGRFIVLAGLKGFNGQLEF-YNVDELETMAT 552 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~-~spdg~~l~~~~~~~~dg~v~i-wd~~~~~~~~~ 552 (712)
|++++++-..| .|.+.|.+++.. +.+.....+.-+. -.|..+.|+.... |..+.+ |-.-.+....+
T Consensus 888 GN~lAa~LSnG---ci~~LDaR~G~v------INswrpmecdllqlaapsdq~L~~sal---dHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 888 GNKLAAALSNG---CIAILDARNGKV------INSWRPMECDLLQLAAPSDQALAQSAL---DHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred cchhhHHhcCC---cEEEEecCCCce------eccCCcccchhhhhcCchhHHHHhhcc---cceeEeeehhcCCeeeec
Confidence 99999999888 899999887652 3322211111111 1355566666665 778877 76554443333
Q ss_pred ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce-----eeee----cccceeeeEEecCCCCCCChhhHHHH
Q 005140 553 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-----LYRT----LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-----~~~~----~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
....+-..--.-.-|.-++++.. .+.+.+|.-.+.. +.+. -.+..+.++--|-...++.+.+.+.|
T Consensus 956 ~kpppepahflqsvgpSLV~a~~-----Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 956 DKPPPEPAHFLQSVGPSLVTAQN-----GNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred cCCCCcchhhhhccCceeEEecc-----CcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 21111110011123556777776 6777777543321 1122 22456677777766666666655544
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00026 Score=67.31 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=53.8
Q ss_pred CCEEEECCCC-CCCchhhhhhHHHHH--HHhhccCeeeeceEEEeccCCC---CCcccE--EEEEeCCHHHHHHHHHHhC
Q 005140 59 GNIIVVDNLP-VVPKEKFEKLEGVIR--KIYSQIGVIKEDGLWMPVDPET---QKSLGY--CFIEYNTPQEAELAKEKTN 130 (712)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~~~~~l~--~~f~~~g~v~~~~~~~~~d~~~---~~~~g~--~fv~~~~~~~a~~a~~~~~ 130 (712)
.+.+||.||| .|+.| -...+|+ +.|++||.|.+ |-+ ++.| ..+.|- -+|+|.+.++|.+||...+
T Consensus 114 KNLvYVigi~pkva~E---e~~~vLk~~eyFGQyGkI~K--Ivv--Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vD 186 (480)
T COG5175 114 KNLVYVIGIPPKVADE---EVAPVLKRHEYFGQYGKIKK--IVV--NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD 186 (480)
T ss_pred cceeEEecCCCCCCcc---cccccccchhhhhhccceeE--EEe--cccccccccccccceEEEEecchHHHHHHHHHhc
Confidence 3678999999 45441 1122454 88999999987 544 3322 122332 3999999999999999999
Q ss_pred CCccCCceEEEE
Q 005140 131 GYKLDRAHIFAV 142 (712)
Q Consensus 131 ~~~~~~~~~l~v 142 (712)
|..+||+ .+++
T Consensus 187 gs~~DGr-~lka 197 (480)
T COG5175 187 GSLLDGR-VLKA 197 (480)
T ss_pred cccccCc-eEee
Confidence 9999997 4443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0067 Score=66.62 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=83.8
Q ss_pred CCCcccceEEEcCCCcEEEEEe------cCc-eEEe--ecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCC--CC
Q 005140 211 RSYWTESFVQWSPLGTYLATVH------RQG-AAVW--GGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPS--NP 279 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~------~~~-i~iw--~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~--~~ 279 (712)
+....+..+++||||+.+|+.. .+. -.|| +..+....+ . .........|||||+.|++.+..... -.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-L-EGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-e-cCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3334678899999999998876 233 3455 433122222 1 22248899999999988887643100 00
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEE---EEcCCce-ec-c
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISV---YETESFT-LI-D 354 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~i---wd~~~~~-~~-~ 354 (712)
.....+.+.+.++..+.....+.+ .+. .++||| ||+.+|...++.|.+ -....|. .+ .
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g---~Is-------------sl~wSp-DG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~ 487 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPG---PIS-------------ELQLSR-DGVRAAMIIGGKVYLAVVEQTEDGQYALTN 487 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCC---CcC-------------eEEECC-CCCEEEEEECCEEEEEEEEeCCCCceeecc
Confidence 011113454445544433221111 121 699999 999999988888877 3333443 11 1
Q ss_pred c--ccccccC-eeeEEECCCCCeEE
Q 005140 355 K--KSLKVEN-VMDFSWSPTDPIIS 376 (712)
Q Consensus 355 ~--~~~~~~~-v~~~~~sp~~~~la 376 (712)
. ....... +.++.|.+++.+++
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred cEEeecccCCccccceEecCCEEEE
Confidence 1 1112223 57899999998553
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.25 Score=55.19 Aligned_cols=321 Identities=11% Similarity=0.102 Sum_probs=149.8
Q ss_pred ceEEEcCCCcEEEEEecCceEEe-ecccCcceeeee-cC---CCeeEEEecCCC------CEEEEEcCCCCCCCcCCCcc
Q 005140 217 SFVQWSPLGTYLATVHRQGAAVW-GGANTFNRLMRY-AH---PQVKLIDFSPGE------KYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~i~iw-~~~~~~~~~~~~-~~---~~v~~i~~Spdg------~~l~t~s~d~~~~~~~~~~~ 285 (712)
++...+.+...++.++.++..++ +.. ... +... ++ ..|.|+.++|-| ++++.|..+. -
T Consensus 491 ti~~~~~n~sqVvvA~~~~~l~y~~i~-~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~---------~ 559 (1096)
T KOG1897|consen 491 TIGVVSANASQVVVAGGGLALFYLEIE-DGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSD---------I 559 (1096)
T ss_pred EEEEEeecceEEEEecCccEEEEEEee-ccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecc---------e
Confidence 33444444555555555553333 333 222 2222 22 249999999853 2677777661 2
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEc--CCceecccccccc--
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYET--ESFTLIDKKSLKV-- 360 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~--~~~~~~~~~~~~~-- 360 (712)
.+.+.-+.+...+.........+ ++++. ...+-. |..||.++. ||.+.-|-+ .++..-..++.+.
T Consensus 560 ~~~l~~~pd~~~~~~~~l~~~~i-------PRSIl--~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt 629 (1096)
T KOG1897|consen 560 SMILTFLPDLILITHEQLSGEII-------PRSIL--LTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT 629 (1096)
T ss_pred EEEEEECCCcceeeeeccCCCcc-------chhee--eEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCC
Confidence 23333334444443332221111 22221 234555 677777776 998876654 4555554443333
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC-CCEEEEEEccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS-GDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~~~~~~~~~~~~~~ 439 (712)
.++.--.|+..++.-++ +..+.+.-++..+.. -.+...++......+..-++. +..++.+..+.
T Consensus 630 ~P~~Lr~f~sk~~t~vf-----a~sdrP~viY~~n~k--Lv~spls~kev~~~c~f~s~a~~d~l~~~~~~~-------- 694 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRTAVF-----ALSDRPTVIYSSNGK--LVYSPLSLKEVNHMCPFNSDAYPDSLASANGGA-------- 694 (1096)
T ss_pred CCcEEEEEeeCCceEEE-----EeCCCCEEEEecCCc--EEEeccchHHhhhhcccccccCCceEEEecCCc--------
Confidence 34444455555433333 236666555443211 011111111111111111222 22444433332
Q ss_pred ccEEEEEEec-CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC--------C---CCeEEEEEeecccccCceeEE
Q 005140 440 TGFELFRIKE-RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS--------P---RPDISFYSMRTAQHAGRVSKL 507 (712)
Q Consensus 440 ~~~~l~~l~~-~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~--------~---~~~v~i~d~~~~~~~~~~~~~ 507 (712)
+.+..+++ ....+.++.+ ......+++.+....+++.+... . ...++++|-++-. .+
T Consensus 695 --l~i~tid~iqkl~irtvpl---~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~------vl 763 (1096)
T KOG1897|consen 695 --LTIGTIDEIQKLHIRTVPL---GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE------VL 763 (1096)
T ss_pred --eEEEEecchhhcceeeecC---CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee------EE
Confidence 34554443 1222333444 55667778877555555544321 1 1134455543211 22
Q ss_pred EEeC--CC----ceeEEEEccC-CCeEEEEecc-------CCCceEEEEECCcceeeeeccc----cceeeEEECCCCCE
Q 005140 508 TTLK--GK----QANALFWSPS-GRFIVLAGLK-------GFNGQLEFYNVDELETMATAEH----FMATDVEWDPTGRY 569 (712)
Q Consensus 508 ~~~~--~~----~v~~l~~spd-g~~l~~~~~~-------~~dg~v~iwd~~~~~~~~~~~~----~~v~~~~~spdg~~ 569 (712)
...+ .. .+.+..|..| +.++++|..- ...|.|.+|....+..+...+. +.+.++. --+|++
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkl 842 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKL 842 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeE
Confidence 2221 11 3455668777 7787777531 1368899988876444443332 3333322 135777
Q ss_pred EEEEEccceeccccEEEEEecCc
Q 005140 570 VATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
||.-.. .+++|++..+
T Consensus 843 lA~In~-------~vrLye~t~~ 858 (1096)
T KOG1897|consen 843 LAGINQ-------SVRLYEWTTE 858 (1096)
T ss_pred EEecCc-------EEEEEEcccc
Confidence 776654 7888887643
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.014 Score=57.84 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=131.2
Q ss_pred eEEecCCCCC-EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
.++||| ... ++..++ ++.|+|.|+.+...+.....+ ..+.+.+|.-+....++. ++..+.|++||+...+
T Consensus 198 dlafSp-~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa------Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 198 DLAFSP-FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA------GLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhccCc-cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE------eccCceEEEEEccCCC
Confidence 588999 666 566666 999999999988776555444 568999999988777762 5666777888875533
Q ss_pred c--------eeeeeeeeecceeE-EECcCCCEEEEEEcccccccccccccEEEEEEecC-CcceeEEEecCCCCceEEEE
Q 005140 401 E--------LRQKNLFSVSDCKM-YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-DIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 401 ~--------~~~~~~~~~~~~~~-~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~ 470 (712)
. +...+++....+.- .-.+.|.+|+..... +..|.+... +.+....++ +..+...+++
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~-----------l~f~ei~~s~~~~p~vlel-e~pG~cismq 337 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV-----------LQFYEIVFSAECLPCVLEL-EPPGICISMQ 337 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh-----------hhhhhhhccccCCCccccc-CCCcceeeee
Confidence 1 11111111111100 123345555554443 344544322 222222333 3356777888
Q ss_pred EeeCCCEEEEEEcCC-CCCeEEEE--EeecccccCceeEEEEeCCC------ceeEEEEccCCCeEEEEeccCCCceEEE
Q 005140 471 WEPKGHRFAVIHGDS-PRPDISFY--SMRTAQHAGRVSKLTTLKGK------QANALFWSPSGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~-~~~~v~i~--d~~~~~~~~~~~~~~~~~~~------~v~~l~~spdg~~l~~~~~~~~dg~v~i 541 (712)
..+..+.+++..... ..+++++- .++...+..-|..-....+. .-..+.=.++..+|+..+. ....+.+
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil 415 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELIL 415 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEE
Confidence 888777776665532 22233321 11111111111111111111 1122333556666665442 2688999
Q ss_pred EECCcceeeeeccc-cceeeEEECC-C-CCEEEEEEccceeccccEEEEEec
Q 005140 542 YNVDELETMATAEH-FMATDVEWDP-T-GRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 542 wd~~~~~~~~~~~~-~~v~~~~~sp-d-g~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
||..+++++.+..- .++.+++... + +.||++-+ |..++||...
T Consensus 416 ~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT------d~~v~Iyk~e 461 (463)
T KOG1645|consen 416 QDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT------DDRVHIYKNE 461 (463)
T ss_pred eccchhheeeecccCcceeecceeecCCcchhhhee------cceEEEEecC
Confidence 99999988877433 5666665443 2 34666555 4677777643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.027 Score=61.34 Aligned_cols=224 Identities=12% Similarity=0.116 Sum_probs=121.9
Q ss_pred EEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCc--
Q 005140 324 FRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSK-- 399 (712)
Q Consensus 324 ~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~-- 399 (712)
-+|++ .+..++.++ +|.|.+++-. .+.+........++..+-|.-++ .+|++.+.+. .+++..+.+|++...
T Consensus 29 sc~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~--~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE--QGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecC--CCCceEEEEecccccCC
Confidence 47888 888888888 9998887643 22323333333333333444444 4555543332 224445555554322
Q ss_pred ----cceeeeeee-------eecceeEEECcCCCEEEEEEcccccccccccccEEEEEE---ecCCcceeEEEecCCCCc
Q 005140 400 ----EELRQKNLF-------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI---KERDIPIEVLELDNKNDK 465 (712)
Q Consensus 400 ----~~~~~~~~~-------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~~l~~h~~~ 465 (712)
..+..+..+ ......++.+.+-+.+++|-.++. +.++.- ++.+.. ..-.....++
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~---------V~~~~GDi~RDrgsr--~~~~~~~~~p 173 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL---------VICYKGDILRDRGSR--QDYSHRGKEP 173 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcE---------EEEEcCcchhccccc--eeeeccCCCC
Confidence 122111111 223344566777778888777765 333321 122221 1111233789
Q ss_pred eEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 466 IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
|+.+++..+++.++.+.... .|.+|.+.... . ....+. |.+.+|-.+++....+++++ +..|.+|+
T Consensus 174 ITgL~~~~d~~s~lFv~Tt~---~V~~y~l~gr~-p----~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~ 241 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVATTE---QVMLYSLSGRT-P----SLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYD 241 (933)
T ss_pred ceeeEEecCCceeEEEEecc---eeEEEEecCCC-c----ceeeeccCCccceeeecCCCCccEEEec----CceEEEEc
Confidence 99999999998844444434 79999997332 1 233233 44678888887665466655 57899999
Q ss_pred CCcceeeeeccccceeeEEECCCCCEEEEEE
Q 005140 544 VDELETMATAEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 544 ~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s 574 (712)
.+....-.+...+.-.-+-|...|.+|+...
T Consensus 242 sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred CCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence 9865544443322222344444455555443
|
|
| >KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=75.40 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=58.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
..+|+|-|||. .+.+..|+.+|+.||+|++ |.+ |-..+|.+||+|-+..+|+.|++.||+..+.++
T Consensus 75 ~~~L~v~nl~~------~Vsn~~L~~~f~~yGeir~--ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 75 QGTLVVFNLPR------SVSNDTLLRIFGAYGEIRE--IRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cceEEEEecCC------cCCHHHHHHHHHhhcchhh--hhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 46899999997 4448999999999999988 544 667889999999999999999999999998876
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.022 Score=54.90 Aligned_cols=183 Identities=9% Similarity=0.134 Sum_probs=99.4
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDIS 491 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~ 491 (712)
..++|+|+...|++..+... .|+.++..+..+..+.+.+ .+....+++.-++.+ +.... ++ .+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~~----------~i~els~~G~vlr~i~l~g-~~D~EgI~y~g~~~~-vl~~Er~~---~L~ 89 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPG----------EIYELSLDGKVLRRIPLDG-FGDYEGITYLGNGRY-VLSEERDQ---RLY 89 (248)
T ss_dssp EEEEEETTTTEEEEEETTTT----------EEEEEETT--EEEEEE-SS--SSEEEEEE-STTEE-EEEETTTT---EEE
T ss_pred cccEEcCCCCeEEEEECCCC----------EEEEEcCCCCEEEEEeCCC-CCCceeEEEECCCEE-EEEEcCCC---cEE
Confidence 34689999888887777654 6788887777777777744 567888888766654 44443 55 888
Q ss_pred EEEeecccccCceeEEEEeC-------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc----ceee--e-------
Q 005140 492 FYSMRTAQHAGRVSKLTTLK-------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE----LETM--A------- 551 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~-------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~----~~~~--~------- 551 (712)
++++..............+. +...-.++|+|.++.|+++.. ..-..+|.+.. .... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceeeccccccccc
Confidence 88885432221122222221 124678999999888888865 33344444432 1111 1
Q ss_pred eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecc-----------cceeeeEEecCCCCCCCh
Q 005140 552 TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK-----------DHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 552 ~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~-----------~~i~~~~w~p~~~~l~s~ 617 (712)
......+++++++|....|..-|.. ...+.++|.+|+.+..... .+.-.+++.|+|+..+++
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~e----s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDE----SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETT----TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cceeccccceEEcCCCCeEEEEECC----CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1223457789999976544444442 6788888888876554321 346779999999765543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0099 Score=59.64 Aligned_cols=243 Identities=12% Similarity=0.032 Sum_probs=145.2
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeee-e-cCCC-eeEEEecCCCCEEEEEcC-CCCCCCcCCCcc
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMR-Y-AHPQ-VKLIDFSPGEKYLVTYSS-HEPSNPRDANRV 285 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~-~-~~~~-v~~i~~Spdg~~l~t~s~-d~~~~~~~~~~~ 285 (712)
|...|+.+.-+ --+++.+++-|| ++.|.-.. .+..... + .|-. +.+++.|-+|..+.|.+. | .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D----------h 76 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD----------H 76 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcc----------c
Confidence 45556555443 457899999999 88998662 1221111 1 2333 889999999999999776 7 7
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC--C-EEEEec--CCeEEEEEcCCc--eecccccc
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD--K-YFAKLG--KNMISVYETESF--TLIDKKSL 358 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg--~-~la~~~--d~~i~iwd~~~~--~~~~~~~~ 358 (712)
.++++|+.+-..+.-++...-+- .+.|....| . .||... ++.+.|+|-... .......+
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg--------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPG--------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred ceeEEEeeccchhhhcccccCCC--------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 89999987655443332221111 233322122 1 444444 899999996532 33444567
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-ccc----e----------eeeeeeeecceeEEECcCCCE
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEE----L----------RQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~----~----------~~~~~~~~~~~~~~~s~~g~~ 423 (712)
|..+|..+.++|.+..+++ .+..+.|-.|..+. .+- + ....-......++.++|+|..
T Consensus 143 H~sPV~~i~y~qa~Ds~vS-------iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVS-------IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred ccCceEEEEeeccccceee-------ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 8889999999999988887 66666777776652 110 0 011112334456788999998
Q ss_pred EEEEEcccccccccccccEEEEEEecCC-------------------cceeEEE----------ecCCC-CceEEEEEee
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERD-------------------IPIEVLE----------LDNKN-DKIIAFAWEP 473 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~-------------------~~~~~~~----------l~~h~-~~v~~~~~sp 473 (712)
+.....+.. +.++.+.... ..+..++ +.-|. ..-+.+.|..
T Consensus 216 istl~~Drk---------VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 216 ISTLNPDRK---------VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred ccccCcccE---------EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 888776654 3333332110 0000011 11122 2344678888
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
.|++|+.++--| |++.++.++.
T Consensus 287 s~~flly~t~~g----ikvin~~tn~ 308 (558)
T KOG0882|consen 287 SGNFLLYGTILG----IKVINLDTNT 308 (558)
T ss_pred CCCEEEeeccee----EEEEEeecCe
Confidence 999999988765 7888887643
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.19 Score=53.10 Aligned_cols=48 Identities=15% Similarity=0.364 Sum_probs=36.9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE 348 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~ 348 (712)
.|.||+. .|+.+.++.-..+.+. .+.|+. +..+++...+|.+++|++.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv-------------~~~wt~-~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIV-------------GMGWTD-DEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEE-------------EEEECC-CCeEEEEEcCCEEEEEeCC
Confidence 4888884 7777777655444332 689999 8888888889999999986
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.16 Score=57.57 Aligned_cols=117 Identities=10% Similarity=0.013 Sum_probs=70.5
Q ss_pred CcccceEEEcCCCcEEEEEecCc------eEEeecccCcceeee-ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG------AAVWGGANTFNRLMR-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~------i~iw~~~~~~~~~~~-~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
.+.+..+.|||||++||.+...+ +.+.++. ++..+.. +.... ..++|++|++.|+....++. .....
T Consensus 126 ~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~----~~~~~ 199 (686)
T PRK10115 126 FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPV----TLLPY 199 (686)
T ss_pred cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCccccCcc-eEEEEeeCCCEEEEEEecCC----CCCCC
Confidence 36778899999999999876432 5577877 4442221 11112 46999999998887766421 01125
Q ss_pred EEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcC
Q 005140 286 VINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETE 348 (712)
Q Consensus 286 ~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~ 348 (712)
.|+.+++.++ +....+....... |.....+. ++++++..+ ++.+.+|+..
T Consensus 200 ~v~~h~lgt~~~~d~lv~~e~~~~~------------~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 200 QVWRHTIGTPASQDELVYEEKDDTF------------YVSLHKTT-SKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEEECCCChhHCeEEEeeCCCCE------------EEEEEEcC-CCCEEEEEEECCccccEEEEECc
Confidence 7899999888 3333444322221 11233455 777655333 5678888853
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0003 Score=72.02 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=57.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
..|||.|||. +++...|++.|.+||.|++.+|.+-. + .++...||||+|.+.+.++.|+..- -..+++ +.
T Consensus 289 ~~i~V~nlP~------da~~~~l~~~Fk~FG~Ik~~~I~vr~-~-~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~-~k 358 (419)
T KOG0116|consen 289 LGIFVKNLPP------DATPAELEEVFKQFGPIKEGGIQVRS-P-GGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG-RK 358 (419)
T ss_pred cceEeecCCC------CCCHHHHHHHHhhcccccccceEEec-c-CCCcCceEEEEEeecchhhhhhhcC-ccccCC-ee
Confidence 4499999998 67788899999999999996665544 2 2344499999999999999998853 444444 46
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|-.
T Consensus 359 l~Vee 363 (419)
T KOG0116|consen 359 LNVEE 363 (419)
T ss_pred EEEEe
Confidence 66554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00067 Score=65.38 Aligned_cols=125 Identities=10% Similarity=0.163 Sum_probs=90.1
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEcc-CCCeEEEEeccCCCceEEE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~i 541 (712)
.+.|.++.|...++.+..|...| .|..+|++.+..........-+++..++++..-. ++++|.+.+. +|.|.+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRng---eI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M---~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNG---EIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDM---TGKIKL 325 (425)
T ss_pred chhHHHHHhcccCCeeEecccCC---cEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccC---cCceeE
Confidence 67788888988888888888888 8999999876432223334444556778777655 6788888887 999999
Q ss_pred EECCccee---eee--ccccc--eeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeec
Q 005140 542 YNVDELET---MAT--AEHFM--ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTL 598 (712)
Q Consensus 542 wd~~~~~~---~~~--~~~~~--v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~ 598 (712)
||++-.+. +.+ +|... -.-+...+....|++++. |.-.+||.+. |.++.+.+
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd-----DcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD-----DCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccC-----eeEEEEEecccCceeeccC
Confidence 99985544 333 34322 223455677778888888 9999999998 66666553
|
|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=57.92 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=55.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEec-cCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc-
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPV-DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA- 137 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~-d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~- 137 (712)
+++||.|||. ++--..|.-+|-.|-.-.. ..+-+ ++..+-.+-+||++|.+..+|..|++.|||..+|-.
T Consensus 35 RTLFVSGLP~------DvKpREiynLFR~f~GYEg--slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 35 RTLFVSGLPN------DVKPREIYNLFRRFHGYEG--SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred ceeeeccCCc------ccCHHHHHHHhccCCCccc--eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 5999999996 4446678888988743333 44433 333344568999999999999999999999999753
Q ss_pred -eEEEEEe
Q 005140 138 -HIFAVNM 144 (712)
Q Consensus 138 -~~l~v~~ 144 (712)
.+|..-.
T Consensus 107 ~stLhiEl 114 (284)
T KOG1457|consen 107 GSTLHIEL 114 (284)
T ss_pred CceeEeee
Confidence 2444443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.45 Score=53.25 Aligned_cols=360 Identities=13% Similarity=0.151 Sum_probs=177.6
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCC------cEEEEEecCc-e-EEeecccCcceeeee--c
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLG------TYLATVHRQG-A-AVWGGANTFNRLMRY--A 252 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg------~~lat~~~~~-i-~iw~~~~~~~~~~~~--~ 252 (712)
.|.++..++...++-.....+-.+.....-...|.|+.+||-| +++|.|.-+. + .|--.+ ....+... .
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p-d~~~~~~~~l~ 578 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP-DLILITHEQLS 578 (1096)
T ss_pred eEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC-CcceeeeeccC
Confidence 3555555544444444422221111111123578999999853 3777777665 2 233333 33333322 1
Q ss_pred C---C-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCCcee--eeccCCCcccccCCCCCcCCCCcCeE
Q 005140 253 H---P-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 253 ~---~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
. + .|...+|--|..||+++..+ |.+.-|.+ .+|..- +.......+.. .-
T Consensus 579 ~~~iPRSIl~~~~e~d~~yLlvalgd----------G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~-------------Lr 635 (1096)
T KOG1897|consen 579 GEIIPRSILLTTFEGDIHYLLVALGD----------GALLYFVLDINTGQLSDRKKVTLGTQPIS-------------LR 635 (1096)
T ss_pred CCccchheeeEEeeccceEEEEEcCC----------ceEEEEEEEcccceEccccccccCCCCcE-------------EE
Confidence 1 1 25566666778999999999 87765544 444321 11111111111 34
Q ss_pred EecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeE-EECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 325 RWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDF-SWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 325 ~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~-~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.|+....+.+.+++|.-..+|..+..-.... +....+..+ .|+.+ ...|++. .++...+..++--..-.
T Consensus 636 ~f~sk~~t~vfa~sdrP~viY~~n~kLv~sp--ls~kev~~~c~f~s~a~~d~l~~~------~~~~l~i~tid~iqkl~ 707 (1096)
T KOG1897|consen 636 TFSSKSRTAVFALSDRPTVIYSSNGKLVYSP--LSLKEVNHMCPFNSDAYPDSLASA------NGGALTIGTIDEIQKLH 707 (1096)
T ss_pred EEeeCCceEEEEeCCCCEEEEecCCcEEEec--cchHHhhhhcccccccCCceEEEe------cCCceEEEEecchhhcc
Confidence 5655245567777788777886552222111 111112222 12222 2344431 33444444443222212
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccc--cccEEEEEEecCCcceeEEEec--CC---CCceEEEEEeeC
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST--YTGFELFRIKERDIPIEVLELD--NK---NDKIIAFAWEPK 474 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~l~--~h---~~~v~~~~~sp~ 474 (712)
+++.. ......++.+++....+.+.+.+...+...+ ...+...++-+.. ....+... .. ...+.+..|..|
T Consensus 708 irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n-Tf~vl~~hef~~~E~~~Si~s~~~~~d 785 (1096)
T KOG1897|consen 708 IRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN-TFEVLSSHEFERNETALSIISCKFTDD 785 (1096)
T ss_pred eeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC-ceeEEeeccccccceeeeeeeeeecCC
Confidence 22222 2233345567775666666665543222110 1112222222211 11111110 00 123445557776
Q ss_pred -CCEEEEEEc----CCC---CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 475 -GHRFAVIHG----DSP---RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 475 -g~~l~~~~~----d~~---~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+.++++|.+ |.. ...|.+|.+...+ +++.+.... .+.+.++.. -+|+++|.- +..|++|++.
T Consensus 786 ~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~---~L~~v~e~~v~Gav~aL~~-fngkllA~I-----n~~vrLye~t 856 (1096)
T KOG1897|consen 786 PNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN---SLELVAETVVKGAVYALVE-FNGKLLAGI-----NQSVRLYEWT 856 (1096)
T ss_pred CceEEEEEEEeeccCCCCcccceEEEEEEecCC---ceeeeeeeeeccceeehhh-hCCeEEEec-----CcEEEEEEcc
Confidence 778888765 111 1268888886521 233333332 222333221 267777655 5699999999
Q ss_pred cceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 546 ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 546 ~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+.+.+.. .+..++..+...-.|..|+.|.. -+++.+-.+.
T Consensus 857 ~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-----m~Sitll~y~ 898 (1096)
T KOG1897|consen 857 TERELRIECNISNPIIALDLQVKGDEIAVGDL-----MRSITLLQYK 898 (1096)
T ss_pred ccceehhhhcccCCeEEEEEEecCcEEEEeec-----cceEEEEEEe
Confidence 8866654 56678888999999999999987 5566655544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.11 Score=54.59 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=123.3
Q ss_pred ccceEEEcCCCcEEEEEe--cCceEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 215 TESFVQWSPLGTYLATVH--RQGAAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~--~~~i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
.-..++.++.|..+.... .+.+.+.|.. ........... ....++++|+++++..+.... ..+++.+.|
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-------~~~~vsvid 146 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-------GNNTVSVID 146 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEeeeccCCceEEECCCCCEEEEEeccc-------CCceEEEEe
Confidence 335788999998555554 3448898977 55555554433 588999999999888776631 117899999
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecc-cc---cccccCeee
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLID-KK---SLKVENVMD 365 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~-~~---~~~~~~v~~ 365 (712)
..+++.+........+. .++++| +|+.+.... ++.|.+.+..+..... .. ......-..
T Consensus 147 ~~t~~~~~~~~vG~~P~--------------~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~ 211 (381)
T COG3391 147 AATNKVTATIPVGNTPT--------------GVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAG 211 (381)
T ss_pred CCCCeEEEEEecCCCcc--------------eEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCce
Confidence 88888887755443332 589999 999776666 8999999977665552 10 112233577
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-cceeEEECcCCCEEEEEEcc
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~ 430 (712)
+.++|+|..+.+... ......+..++............... ....+..+|+|.++.+....
T Consensus 212 i~v~~~g~~~yV~~~----~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 212 IAVDPDGNRVYVAND----GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred EEECCCCCEEEEEec----cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 899999997765311 22235777777766654443211111 23345678999988876544
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00024 Score=65.32 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=54.4
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+||++||. ..-+.+|..+|..||++.+ +.| ..||+||+|.+..+|..|+..+||..|.+..
T Consensus 2 ~rv~vg~~~~------~~~~~d~E~~f~~yg~~~d--~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPY------RARERDVERFFKGYGKIPD--ADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCC------ccchhHHHHHHhhcccccc--cee--------ecccceeccCchhhhhcccchhcCceeccee
Confidence 4689999997 4458999999999999877 544 3479999999999999999999999998863
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0043 Score=67.55 Aligned_cols=192 Identities=11% Similarity=0.102 Sum_probs=122.6
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 409 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 409 (712)
+..++.++ ...+..+|+.+.+.........++|.-+. .+++.+.+ ++..+.|.+-+..+.+.+.....|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~-------G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFC-------GDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEe-------ecccceEEeecCCcCceeeeeeccc
Confidence 34555566 77788889988877665555555555444 34677776 7778888899998888887776666
Q ss_pred ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCC
Q 005140 410 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRP 488 (712)
Q Consensus 410 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~ 488 (712)
.... .|.-+|+.|+++.-...........-+.+|+++.-.. +..+.+ .....-+.|.|. ...+|+++..|
T Consensus 218 ~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~---~~~P~flrf~Psl~t~~~V~S~sG--- 288 (1118)
T KOG1275|consen 218 GSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQF---PYGPQFLRFHPSLTTRLAVTSQSG--- 288 (1118)
T ss_pred ccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhc-cCCccc---ccCchhhhhcccccceEEEEeccc---
Confidence 5554 3577899998876654432322333467888875311 111222 112234567774 46788888878
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
...+-|..+-... ........+ +..+..+.+|++|..++++.. +|.|.+|.-
T Consensus 289 q~q~vd~~~lsNP-~~~~~~v~p~~s~i~~fDiSsn~~alafgd~---~g~v~~wa~ 341 (1118)
T KOG1275|consen 289 QFQFVDTATLSNP-PAGVKMVNPNGSGISAFDISSNGDALAFGDH---EGHVNLWAD 341 (1118)
T ss_pred ceeeccccccCCC-ccceeEEccCCCcceeEEecCCCceEEEecc---cCcEeeecC
Confidence 7888773221111 111222223 334899999999999999998 999999973
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.18 Score=50.48 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=82.6
Q ss_pred eEEEcCCCcEEEEEecCc--eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 218 FVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
+..|.|++..|..+.-.+ |.-|+.. ++ ....+.++. +.++..-..+..|+++... +.+++..+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~-~g-~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g------------~~~~~~~~ 94 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPE-TG-KKRVFPSPGGFSSGALIDAGGRLIACEHG------------VRLLDPDT 94 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCC-cC-ceEEEECCCCcccceeecCCCeEEEEccc------------cEEEeccC
Confidence 356888888777776554 6677776 33 233333333 5555554455566666554 56777766
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecC----------CeEEEEEcC-CceecccccccccCe
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK----------NMISVYETE-SFTLIDKKSLKVENV 363 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d----------~~i~iwd~~-~~~~~~~~~~~~~~v 363 (712)
+..+..+....... ....++.....| +|.+-++... ..-.+|.+. .+..+.....+...-
T Consensus 95 ~~~~t~~~~~~~~~--------~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 95 GGKITLLAEPEDGL--------PLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred CceeEEeccccCCC--------CcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 65533332221111 001133566677 7776554333 112455555 444443332334456
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP 397 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~ 397 (712)
+.++||||++.|.+. .....+|+.++..
T Consensus 166 NGla~SpDg~tly~a------DT~~~~i~r~~~d 193 (307)
T COG3386 166 NGLAFSPDGKTLYVA------DTPANRIHRYDLD 193 (307)
T ss_pred CceEECCCCCEEEEE------eCCCCeEEEEecC
Confidence 889999999877762 3344677777765
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.23 Score=46.65 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeE
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMI 342 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i 342 (712)
-|.+++.|... +.+.+.+..+|.....|..-..... .....+ ++..+..++ |++.
T Consensus 62 vgdfVV~GCy~----------g~lYfl~~~tGs~~w~f~~~~~vk~-------------~a~~d~-~~glIycgshd~~~ 117 (354)
T KOG4649|consen 62 VGDFVVLGCYS----------GGLYFLCVKTGSQIWNFVILETVKV-------------RAQCDF-DGGLIYCGSHDGNF 117 (354)
T ss_pred ECCEEEEEEcc----------CcEEEEEecchhheeeeeehhhhcc-------------ceEEcC-CCceEEEecCCCcE
Confidence 57889999998 8899999999988777765432211 235566 888999888 9999
Q ss_pred EEEEcCCceeccc
Q 005140 343 SVYETESFTLIDK 355 (712)
Q Consensus 343 ~iwd~~~~~~~~~ 355 (712)
...|..+...+.+
T Consensus 118 yalD~~~~~cVyk 130 (354)
T KOG4649|consen 118 YALDPKTYGCVYK 130 (354)
T ss_pred EEecccccceEEe
Confidence 9999887666544
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.29 Score=50.17 Aligned_cols=222 Identities=14% Similarity=0.183 Sum_probs=117.8
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC----CCEEEEec----------C-CeEEEEEcCC
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK----DKYFAKLG----------K-NMISVYETES 349 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d----g~~la~~~----------d-~~i~iwd~~~ 349 (712)
..|++.|..+.+.+.++.-..... +.++. .+.+.. + ..+|+.|. . |.|.+|++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~-------~~s~~--~~~l~~-~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~ 71 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEH-------VTSLC--SVKLKG-DSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISE 71 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEE-------EEEEE--EEEETT-S---SSEEEEEEEEE--TTSSS-S-EEEEEEEECS
T ss_pred cEEEEEeCCCCeEEEEEECCCCce-------EEEEE--EEEEcC-ccccccCEEEEEecccccccccccCcEEEEEEEEc
Confidence 468888887887777666554433 11111 233333 2 35777654 1 8899999987
Q ss_pred c-----ee--cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCC
Q 005140 350 F-----TL--IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGD 422 (712)
Q Consensus 350 ~-----~~--~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 422 (712)
. ++ +.... ..+.|.+++-- .+.+++. .+..+.++.++... .+..................+.
T Consensus 72 ~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~~lv~~-------~g~~l~v~~l~~~~--~l~~~~~~~~~~~i~sl~~~~~ 140 (321)
T PF03178_consen 72 SPENNFKLKLIHSTE-VKGPVTAICSF-NGRLVVA-------VGNKLYVYDLDNSK--TLLKKAFYDSPFYITSLSVFKN 140 (321)
T ss_dssp S-----EEEEEEEEE-ESS-EEEEEEE-TTEEEEE-------ETTEEEEEEEETTS--SEEEEEEE-BSSSEEEEEEETT
T ss_pred ccccceEEEEEEEEe-ecCcceEhhhh-CCEEEEe-------ecCEEEEEEccCcc--cchhhheecceEEEEEEecccc
Confidence 3 22 22221 22447776654 4444443 34555555555444 3333333333222233344467
Q ss_pred EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc---
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ--- 499 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~--- 499 (712)
+++++..... +.++..+........+.-......++++.+-++++.++++..++ ++.++......
T Consensus 141 ~I~vgD~~~s---------v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~g---nl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 141 YILVGDAMKS---------VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDG---NLFVLRYNPEIPNS 208 (321)
T ss_dssp EEEEEESSSS---------EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTS---EEEEEEE-SS-SST
T ss_pred EEEEEEcccC---------EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCC---eEEEEEECCCCccc
Confidence 8888766544 67777776444333333333355688888887778888888888 89998886311
Q ss_pred -ccC-ceeEEEEeC-CCceeEE---EEcc--CCC------eEEEEeccCCCceEEEE
Q 005140 500 -HAG-RVSKLTTLK-GKQANAL---FWSP--SGR------FIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 500 -~~~-~~~~~~~~~-~~~v~~l---~~sp--dg~------~l~~~~~~~~dg~v~iw 542 (712)
... +......+. +..++++ ++.| .+. .++.++. +|.|...
T Consensus 209 ~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~---~G~Ig~l 262 (321)
T PF03178_consen 209 RDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV---DGSIGVL 262 (321)
T ss_dssp TTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET---TS-EEEE
T ss_pred ccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec---CCEEEEE
Confidence 111 344455555 4467776 5555 222 3666666 8888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.53 Score=49.81 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=62.2
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCCC-ee-EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VK-LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~-~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+..++.++.++ +..+|.. +++.+=+....+ +. +... .+..++.+..+ +.|..+|..+|+.+..+
T Consensus 120 ~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~----------g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE-DGEVAWQTKVAGEALSRPVV--SDGLVLVHTSN----------GMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECC-CCCCcccccCCCceecCCEE--ECCEEEEECCC----------CEEEEEEccCCCEeeee
Confidence 44555566666 7788887 666555443322 21 1222 24456667767 78999999999988777
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK 356 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~ 356 (712)
........ ..+..-| ... ++..++...++.+..++..+|+.+...
T Consensus 187 ~~~~~~~~------~~~~~sP--~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 187 NLDVPSLT------LRGESAP--ATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCCccc------ccCCCCC--EEE--CCEEEEEcCCCEEEEEEccCChhhhee
Confidence 64321110 0000111 111 344444444888888888888766543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.55 Score=49.28 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=139.9
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccc-cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKK-SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+...+ ++..+.... .+.+...+.. ....... ......-..++.++.+..+... ....-.|..++....
T Consensus 35 ~v~~~~-~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~------~~~~~~v~vid~~~~ 106 (381)
T COG3391 35 GVAVNP-DGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVT------TGDSNTVSVIDTATN 106 (381)
T ss_pred eeEEcC-ccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEe------cCCCCeEEEEcCccc
Confidence 467777 775444333 3344444443 2221111 1111224577888888866552 212345556665555
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
..+....... ....+.++++++++.+..... ..-.++.++......... .+....+ ..++++|+|+.++
T Consensus 107 ~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~--------~~~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p~g~~vy 175 (381)
T COG3391 107 TVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN--------GNNTVSVIDAATNKVTAT-IPVGNTP-TGVAVDPDGNKVY 175 (381)
T ss_pred ceeeEeeecc-CCceEEECCCCCEEEEEeccc--------CCceEEEEeCCCCeEEEE-EecCCCc-ceEEECCCCCeEE
Confidence 5444444333 455678999999988876642 012344444432222111 2111233 8899999999888
Q ss_pred EEEc-CCCCCeEEEEEeecccccCceeEEE-E----eC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 480 VIHG-DSPRPDISFYSMRTAQHAGRVSKLT-T----LK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 480 ~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~-~----~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+... ++ .|.+++..... ... . .. ...-..+.++|+|.++.+....+.++.+...|..++.....
T Consensus 176 v~~~~~~---~v~vi~~~~~~------v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 176 VTNSDDN---TVSVIDTSGNS------VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred EEecCCC---eEEEEeCCCcc------eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 8774 44 89999965432 121 1 11 12346799999999888876533246899999998777765
Q ss_pred -ccc-c-ceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 553 -AEH-F-MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 553 -~~~-~-~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
... . ....+..+|+|+++...... .+.+.+-+.....+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~----~~~V~vid~~~~~v 287 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQ----GGTVSVIDGATDRV 287 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecC----CCeEEEEeCCCCce
Confidence 111 1 45678999999998888652 46777777654333
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.41 Score=47.76 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=76.4
Q ss_pred CCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc
Q 005140 223 PLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 302 (712)
Q Consensus 223 pdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~ 302 (712)
..|+.|+.|..+|+.+++...........+...|..+...|+-+.|++-+. +.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd-----------~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD-----------GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC-----------CccEEEEchhhccccccc
Confidence 357889999999998888842344444444445999999998887777653 579999986544332110
Q ss_pred ---CCCcccccCCCCCcCCCCcCeEE---ecCCCCCEEEEecCCeEEEEEcCCc--ee-cccccccc-cCeeeEEECCCC
Q 005140 303 ---GSADEFAVGGTGGVAGVSWPVFR---WGGGKDKYFAKLGKNMISVYETESF--TL-IDKKSLKV-ENVMDFSWSPTD 372 (712)
Q Consensus 303 ---~~~~~~~~~~~~~~~~~~~~~~~---~s~~dg~~la~~~d~~i~iwd~~~~--~~-~~~~~~~~-~~v~~~~~sp~~ 372 (712)
..........-....++. .++ -.. .+.+|+.+....|.+|..... .. ...+.+.. ..+..++|. +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~--~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~ 148 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVS--FFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--G 148 (275)
T ss_pred cccccccccccccccccCCee--EEeeccccc-cceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--C
Confidence 000000000000011111 122 112 445666666889999887642 11 11111222 457888888 4
Q ss_pred CeEEE
Q 005140 373 PIISL 377 (712)
Q Consensus 373 ~~la~ 377 (712)
+.|++
T Consensus 149 ~~i~v 153 (275)
T PF00780_consen 149 NKICV 153 (275)
T ss_pred CEEEE
Confidence 55555
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0028 Score=44.52 Aligned_cols=52 Identities=21% Similarity=0.476 Sum_probs=40.0
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHH
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAK 126 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~ 126 (712)
+.|.|.|.|. +. ...+.+.|.+||+|.. +.++. ..-+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~------~~-~~~vl~~F~~fGeI~~--~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPP------DL-AEEVLEHFASFGEIVD--IYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECc------hH-HHHHHHHHHhcCCEEE--EEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4678888885 33 3445568999999999 88872 2238999999999999984
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.065 Score=51.42 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=81.4
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
...+.+++|.. ...+.|..+|..+-+.+.. +...|+.+|+.+|+.++....+..... -
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~y--------G~S~l~~~d~~tg~~~~~~~l~~~~Fg-------E---- 93 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLY--------GQSSLRKVDLETGKVLQSVPLPPRYFG-------E---- 93 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECST--------TEEEEEEEETTTSSEEEEEE-TTT--E-------E----
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCC--------CcEEEEEEECCCCcEEEEEECCccccc-------e----
Confidence 34667777765 7889998889888888876 225899999999998876665544331 1
Q ss_pred CeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 322 PVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
-+.... |.-+..+.-++...+||..+.+.+.......++ ..++ .++..|.. .|++.+++.++..+.+.
T Consensus 94 -Git~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG-WGLt--~dg~~Li~-------SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 94 -GITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG-WGLT--SDGKRLIM-------SDGSSRLYFLDPETFKE 161 (264)
T ss_dssp -EEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEE--ECSSCEEE-------E-SSSEEEEE-TTT-SE
T ss_pred -eEEEEC-CEEEEEEecCCeEEEEccccceEEEEEecCCcc-eEEE--cCCCEEEE-------ECCccceEEECCcccce
Confidence 133333 333444445999999999998887665444332 3344 56777777 78888999888766554
Q ss_pred ee
Q 005140 402 LR 403 (712)
Q Consensus 402 ~~ 403 (712)
.+
T Consensus 162 ~~ 163 (264)
T PF05096_consen 162 VR 163 (264)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0012 Score=60.92 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC--------CCcccE----EEEEeCCHHHHHHH
Q 005140 59 GNIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET--------QKSLGY----CFIEYNTPQEAELA 125 (712)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~--------~~~~g~----~fv~~~~~~~a~~a 125 (712)
.-+||+++|| ...+. -|++||+.||.|-. |++.....+ |..+++ |.|+|.+...|+..
T Consensus 74 ~GVvylS~IPp~m~~~-------rlReil~~yGeVGR--vylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i 144 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPV-------RLREILSQYGEVGR--VYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI 144 (278)
T ss_pred ceEEEeccCCCccCHH-------HHHHHHHhccccce--EEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence 3589999999 45543 49999999999999 999777655 444443 56999999999999
Q ss_pred HHHhCCCccCCc
Q 005140 126 KEKTNGYKLDRA 137 (712)
Q Consensus 126 ~~~~~~~~~~~~ 137 (712)
...|||..|+|+
T Consensus 145 Ae~Lnn~~Iggk 156 (278)
T KOG3152|consen 145 AELLNNTPIGGK 156 (278)
T ss_pred HHHhCCCccCCC
Confidence 999999999886
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0009 Score=61.57 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=57.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.+.++|.+++- +..+.+|.+.|.++|++.. ..+ ..+++||+|+..++|.+|+..++|..+.++
T Consensus 98 s~~r~~~~~~~~------r~~~qdl~d~~~~~g~~~~--~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 98 THFRLIVRNLSL------RVSWQDLKDHFRPAGEVTY--VDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred ccceeeeccchh------hhhHHHHhhhhcccCCCch--hhh--------hccccceeehhhhhhhhcchhccchhhcCc
Confidence 467899999997 6668999999999999844 212 568999999999999999999999999887
Q ss_pred eEEEE
Q 005140 138 HIFAV 142 (712)
Q Consensus 138 ~~l~v 142 (712)
.+.+
T Consensus 162 -~l~~ 165 (216)
T KOG0106|consen 162 -RISV 165 (216)
T ss_pred -eeee
Confidence 4444
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0081 Score=58.06 Aligned_cols=87 Identities=18% Similarity=0.348 Sum_probs=69.4
Q ss_pred CCCCEEEECCCCCCCchhhhh-------hHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 57 GFGNIIVVDNLPVVPKEKFEK-------LEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~-------~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
.+.++|++-|+= +++.+++ ++++|++-.++||.|.+ | +..|+ .+.|.+-|.|.+.++|..||+.|
T Consensus 263 r~~~tVi~kn~F--tp~~~~~~~~l~~dlkedl~eec~K~G~v~~--v-vv~d~---hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 263 RADRTVILKNMF--TPEDFEKNPDLLNDLKEDLTEECEKFGQVRK--V-VVYDR---HPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cCCcEEEeeecC--CHHHhccCHHHHHHHHHHHHHHHHHhCCcce--E-EEecc---CCCceeEEEeCChHHHHHHHHHh
Confidence 467899999984 2333332 56667777999999998 5 55665 68899999999999999999999
Q ss_pred CCCccCCceEEEEEeeccccccc
Q 005140 130 NGYKLDRAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~~~~~~~ 152 (712)
+|..++|+ .+....+...-++.
T Consensus 335 ~GR~fdgR-ql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 335 DGRWFDGR-QLTASIWDGKTKFQ 356 (382)
T ss_pred cCeeecce-EEEEEEeCCcceee
Confidence 99999996 88888887655554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00082 Score=70.12 Aligned_cols=182 Identities=14% Similarity=0.183 Sum_probs=107.2
Q ss_pred eEEEEECCeeEEEecCCCCCCC-cccccCCCcccceEEEcC-CCcEEEEEecC----c-eEEeecccCcc--ee--eee-
Q 005140 184 QFVIRSGTDTEVLWNDARHLKP-EPVYKRSYWTESFVQWSP-LGTYLATVHRQ----G-AAVWGGANTFN--RL--MRY- 251 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~----~-i~iw~~~~~~~--~~--~~~- 251 (712)
..+++..+|.+.+-+...+... .-...+|...+++++|++ |...||.|... . +.|||.. +.- +. -.|
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~-s~ltvPke~~~fs 150 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN-SLLTVPKESPLFS 150 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc-cccCCCccccccc
Confidence 4456666676666655222222 234468888999999998 56677777532 2 7799988 441 11 111
Q ss_pred --cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 --AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 --~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
...+..+++|-.+.+.+++|... ..+.++|++.. .....+... .+.|++ .=-|++
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~s----------r~~~ifdlRqs~~~~~svnTk----------~vqG~t--Vdp~~~ 208 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTS----------RSVHIFDLRQSLDSVSSVNTK----------YVQGIT--VDPFSP 208 (783)
T ss_pred cccccCccccccccCcchhhccccc----------chhhhhhhhhhhhhhhhhhhh----------hcccce--ecCCCC
Confidence 12346788998888989888887 78999998622 112222110 112211 113444
Q ss_pred CCCCEEEEecCCeEEEEEcC-Cce-eccc----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 329 GKDKYFAKLGKNMISVYETE-SFT-LIDK----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 329 ~dg~~la~~~d~~i~iwd~~-~~~-~~~~----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
.|+++..++.|.+||.. ..+ ++.. .......+..++|+|...-+.. ........|.+|++
T Consensus 209 ---nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla-----~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 209 ---NYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA-----VLSRDSITIRLYDI 274 (783)
T ss_pred ---CceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh-----hhccCcceEEEecc
Confidence 79998889999999943 221 1111 1111224889999997543332 11445566777765
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=64.69 Aligned_cols=102 Identities=9% Similarity=0.135 Sum_probs=69.2
Q ss_pred CCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 224 LGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 224 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
.+..+|.|+..| +...|..++.....+-. ..+|++++|+.+|+.++.|-.+ |.|.+||+..++.++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~----------G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGD----------GHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCC----------CcEEEEEccCCcceee
Confidence 466788888777 77777764433333332 2349999999999999999999 9999999999999888
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.-+..+. +++- .+.|.. ++..+.++. .|. +|.+.
T Consensus 168 i~e~~ap~--------t~vi--~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 168 ITEHGAPV--------TGVI--FVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeecCCcc--------ceEE--EEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 77665443 1211 345555 555555554 443 66543
|
|
| >KOG1995 consensus Conserved Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0016 Score=63.37 Aligned_cols=87 Identities=23% Similarity=0.223 Sum_probs=74.1
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeec------eEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKED------GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~------~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
.....+|||-+||- .+++++|...|.++|.|..+ -|++=+|++|++.||=|.|+|+++..|+.|+.-+
T Consensus 63 ~s~~~ti~v~g~~d------~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ 136 (351)
T KOG1995|consen 63 KSDNETIFVWGCPD------SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWF 136 (351)
T ss_pred ccccccceeeccCc------cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhh
Confidence 34556999999997 55589999999999998653 3677889999999999999999999999999999
Q ss_pred CCCccCCceEEEEEeecccc
Q 005140 130 NGYKLDRAHIFAVNMFDDFD 149 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~~~~ 149 (712)
++..+.+ .+++|..+....
T Consensus 137 agkdf~g-n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 137 AGKDFCG-NTIKVSLAERRT 155 (351)
T ss_pred ccccccC-CCchhhhhhhcc
Confidence 9999988 488888766544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.44 Score=47.82 Aligned_cols=228 Identities=13% Similarity=0.041 Sum_probs=115.7
Q ss_pred EEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeE-EECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-
Q 005140 324 FRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDF-SWSPTDPIISLFVPELGGGNQPARVSLVQIPSK- 399 (712)
Q Consensus 324 ~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~-~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~- 399 (712)
..|.+ +...|..+. .+.|.-|+..++.... . .....+.++ .....+.++++ ..+.. ++..+....
T Consensus 30 P~w~~-~~~~L~w~DI~~~~i~r~~~~~g~~~~-~-~~p~~~~~~~~~d~~g~Lv~~-------~~g~~-~~~~~~~~~~ 98 (307)
T COG3386 30 PVWDP-DRGALLWVDILGGRIHRLDPETGKKRV-F-PSPGGFSSGALIDAGGRLIAC-------EHGVR-LLDPDTGGKI 98 (307)
T ss_pred ccCcC-CCCEEEEEeCCCCeEEEecCCcCceEE-E-ECCCCcccceeecCCCeEEEE-------ccccE-EEeccCCcee
Confidence 46778 888666666 8888888887553221 0 111223333 33444444443 22211 111111111
Q ss_pred ccee----eeeeeeecceeEEECcCCCEEEEEEc---ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 400 EELR----QKNLFSVSDCKMYWQSSGDYLAVKVD---RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 400 ~~~~----~~~~~~~~~~~~~~s~~g~~l~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
..+. .......++ ....|+|.+.+.... .... ... .. -.+|+++..+... ..+..+-..-+.++||
T Consensus 99 t~~~~~~~~~~~~r~ND--~~v~pdG~~wfgt~~~~~~~~~-~~~-~~-G~lyr~~p~g~~~--~l~~~~~~~~NGla~S 171 (307)
T COG3386 99 TLLAEPEDGLPLNRPND--GVVDPDGRIWFGDMGYFDLGKS-EER-PT-GSLYRVDPDGGVV--RLLDDDLTIPNGLAFS 171 (307)
T ss_pred EEeccccCCCCcCCCCc--eeEcCCCCEEEeCCCccccCcc-ccC-Cc-ceEEEEcCCCCEE--EeecCcEEecCceEEC
Confidence 0000 011111122 234788876555433 1110 011 11 1688887432221 1122233455679999
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEeec--ccccCc-eeEEEEeCCCceeEEEEccCCCeEEEEeccCCCc-eEEEEECCcce
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMRT--AQHAGR-VSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG-QLEFYNVDELE 548 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~~--~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg-~v~iwd~~~~~ 548 (712)
||++.|+++-... ..|.-|++.. +....+ .........+....++...+|.+.+++.. +| .|.+|+.+ ++
T Consensus 172 pDg~tly~aDT~~--~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~~pd-G~ 245 (307)
T COG3386 172 PDGKTLYVADTPA--NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRFNPD-GK 245 (307)
T ss_pred CCCCEEEEEeCCC--CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEECCC-Cc
Confidence 9999888876643 2677777752 111111 11111122234566788888888765544 43 89999999 77
Q ss_pred eeee--ccccceeeEEEC-CCCCEEEEEEc
Q 005140 549 TMAT--AEHFMATDVEWD-PTGRYVATAVT 575 (712)
Q Consensus 549 ~~~~--~~~~~v~~~~~s-pdg~~l~t~s~ 575 (712)
++.. .....+++++|- |+.+.|...+.
T Consensus 246 l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 246 LLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 7665 344677777775 45565555554
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0064 Score=63.74 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=64.9
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC--ee-EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VK-LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~-~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
.+..+.|+|.-.+||++...| +.+.... ++++-+++.++ ++ +++|.|||+.||.|-.| |+|++-
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd----------G~I~L~ 89 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD----------GTIRLH 89 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecC----------CeEEEE
Confidence 456789999999999999999 8888776 77888887443 66 99999999999999999 999999
Q ss_pred EccCCceeeec
Q 005140 291 DVRTGKVMRDF 301 (712)
Q Consensus 291 d~~~g~~~~~~ 301 (712)
|+.+|..+..+
T Consensus 90 Dve~~~~l~~~ 100 (665)
T KOG4640|consen 90 DVEKGGRLVSF 100 (665)
T ss_pred EccCCCceecc
Confidence 99999888774
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.86 Score=45.42 Aligned_cols=234 Identities=12% Similarity=0.142 Sum_probs=118.3
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 341 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~ 341 (712)
..++.|+.|..+ | |.++++... ...+...... +. .+...+ +-+.++..+|+.
T Consensus 5 ~~~~~L~vGt~~----------G-l~~~~~~~~~~~~~i~~~~~--I~-------------ql~vl~-~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTED----------G-LYVYDLSDPSKPTRILKLSS--IT-------------QLSVLP-ELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECC----------C-EEEEEecCCccceeEeecce--EE-------------EEEEec-ccCEEEEEcCCc
Confidence 457889999887 7 889998322 2222222211 21 466777 778888888999
Q ss_pred EEEEEcCCceecccc--------------cccccCeeeEE---ECCCCCeEEEEeecCCCCCCCeEEEEEecCCc---cc
Q 005140 342 ISVYETESFTLIDKK--------------SLKVENVMDFS---WSPTDPIISLFVPELGGGNQPARVSLVQIPSK---EE 401 (712)
Q Consensus 342 i~iwd~~~~~~~~~~--------------~~~~~~v~~~~---~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~---~~ 401 (712)
+.+|++......... .....++..++ -......|++. ....+.|+.|..+.. +.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va------~kk~i~i~~~~~~~~~f~~~ 131 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA------VKKKILIYEWNDPRNSFSKL 131 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE------ECCEEEEEEEECCcccccce
Confidence 999998865443311 11223455555 12223445542 233566666665422 23
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC----------CCCceEEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN----------KNDKIIAFAW 471 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~----------h~~~v~~~~~ 471 (712)
++... .......+.|. ++.++++..+. +.+.++.... +........ ...++..+..
T Consensus 132 ~ke~~-lp~~~~~i~~~--~~~i~v~~~~~----------f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (275)
T PF00780_consen 132 LKEIS-LPDPPSSIAFL--GNKICVGTSKG----------FYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIFQL 197 (275)
T ss_pred eEEEE-cCCCcEEEEEe--CCEEEEEeCCc----------eEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEEEe
Confidence 33322 23444556677 67777776543 3455554221 111111100 0122333333
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+++.+|++ ..+ .-.+.+.. |... + ...-.... ...++++ ...||+... ++.|.||++.+++++.
T Consensus 198 -~~~e~Ll~-~~~----~g~fv~~~-G~~~-r-~~~i~W~~-~p~~~~~--~~pyli~~~----~~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 198 -SDNEFLLC-YDN----IGVFVNKN-GEPS-R-KSTIQWSS-APQSVAY--SSPYLIAFS----SNSIEVRSLETGELVQ 261 (275)
T ss_pred -CCceEEEE-ecc----eEEEEcCC-CCcC-c-ccEEEcCC-chhEEEE--ECCEEEEEC----CCEEEEEECcCCcEEE
Confidence 34444443 322 22333432 2211 0 11112222 3344444 234777665 5669999999998887
Q ss_pred ecccccee
Q 005140 552 TAEHFMAT 559 (712)
Q Consensus 552 ~~~~~~v~ 559 (712)
+.....+.
T Consensus 262 ~i~~~~~~ 269 (275)
T PF00780_consen 262 TIPLPNIR 269 (275)
T ss_pred EEECCCEE
Confidence 76554443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.78 Score=44.93 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=87.0
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.+...++|+++..+++.. ..+....++............ .........|+++|...++......
T Consensus 25 ~~~s~AvS~dg~~~A~v~----~~~~~~~L~~~~~~~~~~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~--------- 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVS----EGDGGRSLYVGPAGGPVRPVL---TGGSLTRPSWDPDGWVWTVDDGSGG--------- 88 (253)
T ss_pred cccceEECCCCCeEEEEE----EcCCCCEEEEEcCCCcceeec---cCCccccccccCCCCEEEEEcCCCc---------
Confidence 578899999999888753 134445565554432211110 1123445679999776666543332
Q ss_pred EEEEEEecC-CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc--Cce-eEEEEeC--CCce
Q 005140 442 FELFRIKER-DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA--GRV-SKLTTLK--GKQA 515 (712)
Q Consensus 442 ~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~--~~~-~~~~~~~--~~~v 515 (712)
..++.-... ......+....-.+.|.+|.+||||.++|+...++....|.+--+...... ... ..+.... ...+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v 168 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV 168 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence 233321111 111111222111238999999999999999985433347888776532211 111 1112221 3367
Q ss_pred eEEEEccCCCeEEEEec
Q 005140 516 NALFWSPSGRFIVLAGL 532 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~ 532 (712)
..+.|.+++.+++.+..
T Consensus 169 ~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRS 185 (253)
T ss_pred eeeeecCCCEEEEEeCC
Confidence 89999999988887765
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.00059 Score=71.12 Aligned_cols=148 Identities=11% Similarity=0.287 Sum_probs=94.6
Q ss_pred ecCCCCceEEEEEee-CCCEEEEEEcC-CCCCeEEEEEeecccccCceeE-EEEeCCCceeEEEEccCCCeEEEEeccCC
Q 005140 459 LDNKNDKIIAFAWEP-KGHRFAVIHGD-SPRPDISFYSMRTAQHAGRVSK-LTTLKGKQANALFWSPSGRFIVLAGLKGF 535 (712)
Q Consensus 459 l~~h~~~v~~~~~sp-~g~~l~~~~~d-~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~~~~~~~~ 535 (712)
.++|..+.++++|++ |.+.||++... .....+.|||+.++-....-.. +..-.....++++|-.+.+.+.+|..
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~--- 174 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT--- 174 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc---
Confidence 456788999999999 67778877542 1123799999987522111111 11111224568999988888888876
Q ss_pred CceEEEEECC-cceeeeeccccceeeEEECC-CCCEEEEEEccceeccccEEEEEe-c--Cceeeee------cccceee
Q 005140 536 NGQLEFYNVD-ELETMATAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSF-N--GKLLYRT------LKDHFFQ 604 (712)
Q Consensus 536 dg~v~iwd~~-~~~~~~~~~~~~v~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~-~--g~~~~~~------~~~~i~~ 604 (712)
...+.++|++ ............+..+..+| .+.|+++.+ |+.+.+||. . .+.+... ...++..
T Consensus 175 sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFA 248 (783)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc------cCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence 7789999988 33333333444566777888 777877655 589999993 2 1222211 1246999
Q ss_pred eEEecCCCCCC
Q 005140 605 FLWRPRPPSFL 615 (712)
Q Consensus 605 ~~w~p~~~~l~ 615 (712)
++|.|..+-++
T Consensus 249 ~aycPtrtgll 259 (783)
T KOG1008|consen 249 LAYCPTRTGLL 259 (783)
T ss_pred EEeccCCcchh
Confidence 99999865443
|
|
| >PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0068 Score=49.73 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=35.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN 130 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~ 130 (712)
+++|.+.|++. +...++|+..|++||.|.- |.+... .. -|+|.|.+++.|+.|+..+.
T Consensus 1 G~il~~~g~~~------~~~re~iK~~f~~~g~V~y--VD~~~G----~~--~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 1 GCILKFSGLGE------PTSREDIKEAFSQFGEVAY--VDFSRG----DT--EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp --EEEEEE--S------S--HHHHHHHT-SS--EEE--EE--TT-----S--EEEEEESS---HHHHHHHHH
T ss_pred CeEEEEecCCC------CcCHHHHHHHHHhcCCcce--EEecCC----CC--EEEEEECCcchHHHHHHHHH
Confidence 46889999886 5558999999999999877 655543 33 68999999999999998754
|
It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.83 Score=44.04 Aligned_cols=179 Identities=14% Similarity=0.112 Sum_probs=105.5
Q ss_pred ceEEEcCCCcEEEEEecCc---eEEeecccCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHRQG---AAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~---i~iw~~~~~~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
-.+.|..+|.++-+.+..| ++.++.. +++.+.+...+. -..++...|.-+.+|.-. +...+|
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----------~~~f~y 115 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----------GTGFVY 115 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----------SEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCccccceeEEEECCEEEEEEecC-----------CeEEEE
Confidence 3578878899888888766 7799999 777666554432 445566555445555543 588999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCee
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVM 364 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~ 364 (712)
|..+-+.+.++...... |- ++ . |++.|+.+. ...|.++|..+++......... ..++
T Consensus 116 d~~tl~~~~~~~y~~EG-------------WG-Lt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPGEG-------------WG-LT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp ETTTTEEEEEEE-SSS---------------E-EE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred ccccceEEEEEecCCcc-------------eE-EE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence 99999998888765322 64 55 3 666555554 8899999988887665544332 3467
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee--------------eec-ceeEEECcCCCEEEEEEc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF--------------SVS-DCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~s~~g~~l~~~~~ 429 (712)
.+.|- +|...|= -=.+-.|..++..+++......+. ... -..++|.|.+..|.+...
T Consensus 179 ELE~i-~G~IyAN-------VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 179 ELEYI-NGKIYAN-------VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEE-TTEEEEE-------ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEE-cCEEEEE-------eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 77776 4443331 122335666666665543322110 011 124688888888877666
Q ss_pred ccc
Q 005140 430 RYT 432 (712)
Q Consensus 430 ~~~ 432 (712)
...
T Consensus 251 ~Wp 253 (264)
T PF05096_consen 251 LWP 253 (264)
T ss_dssp T-S
T ss_pred CCC
Confidence 544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.015 Score=61.11 Aligned_cols=90 Identities=18% Similarity=0.383 Sum_probs=70.4
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCcee-EEEEccCCCeEEEEeccCCCceE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQAN-ALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~-~l~~spdg~~l~~~~~~~~dg~v 539 (712)
...+.-+.|+|.-..||++..+| .|-++.+. +..+.+++ +..++ +++|.|||+.|++|-. ||+|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~g---elli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I 86 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKG---ELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTI 86 (665)
T ss_pred ccceEEEEEcCccchhheeccCC---cEEEEEec-------cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeE
Confidence 44567789999999999999988 88888774 12555555 44565 9999999999999998 9999
Q ss_pred EEEECCcceeeee---ccccceeeEEECC
Q 005140 540 EFYNVDELETMAT---AEHFMATDVEWDP 565 (712)
Q Consensus 540 ~iwd~~~~~~~~~---~~~~~v~~~~~sp 565 (712)
.+-|..++..+.. .-...|+++.|+|
T Consensus 87 ~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCceeccccccccchheeeccc
Confidence 9999998877765 2235667777763
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.19 Score=52.98 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=85.6
Q ss_pred EEecCCCCCEEEEec----CCeEEEEEcCCceecccccccccCeeeEEECCCC-----CeEEEEeecCCCCCCCeEEEEE
Q 005140 324 FRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD-----PIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 324 ~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~~~~i~~~ 394 (712)
++|. ||+.++-.. +|.+++=|.. .+ ..++.|.+++|+|-+ .+||+ .....+.||.+
T Consensus 25 laWT--DGkqVvLT~L~l~~gE~kfGds~---vi----GqFEhV~GlsW~P~~~~~~paLLAV------QHkkhVtVWqL 89 (671)
T PF15390_consen 25 LAWT--DGKQVVLTDLQLHNGEPKFGDSK---VI----GQFEHVHGLSWAPPCTADTPALLAV------QHKKHVTVWQL 89 (671)
T ss_pred eEec--CCCEEEEEeeeeeCCccccCCcc---Ee----eccceeeeeeecCcccCCCCceEEE------eccceEEEEEe
Confidence 5665 666554332 4554443322 22 455679999999963 35564 14455666666
Q ss_pred ecCC---ccceeeee-----eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 395 QIPS---KEELRQKN-----LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 395 ~~~~---~~~~~~~~-----~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
.... .+.+.... .+.+-.....|+|....|++.+.+.. -.++.++..+..+. ..+ ...+.|
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv---------SV~~sV~~d~srVk-aDi-~~~G~I 158 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV---------SVLPSVHCDSSRVK-ADI-KTSGLI 158 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce---------eEeeeeeeCCceEE-Eec-cCCceE
Confidence 5432 22222211 12222233469999999998776654 34566655444432 223 337889
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|.+|.+||++|+++.+..- .-+|||-.
T Consensus 159 hCACWT~DG~RLVVAvGSsL--HSyiWd~~ 186 (671)
T PF15390_consen 159 HCACWTKDGQRLVVAVGSSL--HSYIWDSA 186 (671)
T ss_pred EEEEecCcCCEEEEEeCCeE--EEEEecCc
Confidence 99999999999999887542 56778754
|
|
| >KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0083 Score=63.49 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=58.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP---ETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~---~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.-+.+||+||+- ...++.|-..|+.||.|.. +.+++-+ +..+.+-.+||.|-+..+|++|++.|+|..+
T Consensus 173 ~TTNlyv~Nlnp------sv~E~~ll~tfGrfgPlas--vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNP------SVDENFLLRTFGRFGPLAS--VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred cccceeeecCCc------cccHHHHHHHhcccCcccc--eeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 457999999995 3348999999999999988 6555433 3455677899999999999999999999876
Q ss_pred CCc
Q 005140 135 DRA 137 (712)
Q Consensus 135 ~~~ 137 (712)
...
T Consensus 245 ~~~ 247 (877)
T KOG0151|consen 245 MEY 247 (877)
T ss_pred eee
Confidence 653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.32 Score=47.68 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=82.8
Q ss_pred ccceEEEcCCCcEEEEEe--cCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE-
Q 005140 215 TESFVQWSPLGTYLATVH--RQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD- 291 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~--~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd- 291 (712)
.+.++++|+||+.+|... .++..||-............-..+...+|+++|...+....+ ...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~----------~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGS----------GGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCC----------CceEEEEe
Confidence 678899999999998877 555444433311222222233368899999998777666655 4455553
Q ss_pred ccCCceee-eccCCCc--ccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcC---Cc--eec-ccccc
Q 005140 292 VRTGKVMR-DFKGSAD--EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETE---SF--TLI-DKKSL 358 (712)
Q Consensus 292 ~~~g~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~---~~--~~~-~~~~~ 358 (712)
..++.... ....... .+. .+++|| ||..+|... ++.|.+--+. .+ ..+ .....
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~-------------~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRIT-------------ALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred cCCCcceeEEecccccCCceE-------------EEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 33333211 1111110 221 799999 999988776 6777776543 22 111 11111
Q ss_pred ---cccCeeeEEECCCCCeEEE
Q 005140 359 ---KVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 359 ---~~~~v~~~~~sp~~~~la~ 377 (712)
....+..++|.+++.+++.
T Consensus 161 ~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 161 APPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred cccccCcceeeeecCCCEEEEE
Confidence 1345889999999987776
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1855 consensus Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0074 Score=60.02 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=56.3
Q ss_pred cCcccccC--CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEecc---C--CCCCc--------ccEEEE
Q 005140 50 DDQEVESG--FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVD---P--ETQKS--------LGYCFI 114 (712)
Q Consensus 50 ~~~~~~~~--~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d---~--~~~~~--------~g~~fv 114 (712)
+-|+++.- -+.+|++-|||- +.+-+-|.+||+.+|.|+. |.+-.- + ..|.. +-.|||
T Consensus 220 Plp~~~~eel~srtivaenLP~------Dh~~enl~kiFg~~G~Iks--IRIckPgaip~d~r~~~~~~~~~~tk~~Alv 291 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPL------DHSYENLSKIFGTVGSIKS--IRICKPGAIPEDVRGFPKKYFELQTKECALV 291 (484)
T ss_pred CCCCccccccccceEEEecCCc------chHHHHHHHHhhcccceee--eeecCCCCCCcccccCCccchhhhhhhhhhh
Confidence 44444433 578999999998 6667889999999999988 766332 1 13333 456899
Q ss_pred EeCCHHHHHHHHHHhCCC
Q 005140 115 EYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 115 ~~~~~~~a~~a~~~~~~~ 132 (712)
+|...+.|.+|.+.+|-.
T Consensus 292 Eye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 292 EYEEVEAARKARELLNPE 309 (484)
T ss_pred hhhhhHHHHHHHHhhchh
Confidence 999999999999988654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.8 Score=44.34 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=96.6
Q ss_pred CeEEEEEcCCceeccccccccc-Ce---eeEEECCC----CCeEEEEeecCCCCC--CC-eEEEEEecCCc----cceee
Q 005140 340 NMISVYETESFTLIDKKSLKVE-NV---MDFSWSPT----DPIISLFVPELGGGN--QP-ARVSLVQIPSK----EELRQ 404 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~-~v---~~~~~sp~----~~~la~~~~~~~~~~--~~-~~i~~~~~~~~----~~~~~ 404 (712)
..|+++|..++..+....+... .+ ..+.+..+ ..+|++.+.-..+.+ .. ++|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577777776666654443322 23 33444443 456665432111111 23 88999998773 12221
Q ss_pred e--eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 405 K--NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 405 ~--~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
. .........+ .+-+.+|+++.... +.+|++.... .............+.++ ...+++++++.
T Consensus 82 i~~~~~~g~V~ai--~~~~~~lv~~~g~~----------l~v~~l~~~~-~l~~~~~~~~~~~i~sl--~~~~~~I~vgD 146 (321)
T PF03178_consen 82 IHSTEVKGPVTAI--CSFNGRLVVAVGNK----------LYVYDLDNSK-TLLKKAFYDSPFYITSL--SVFKNYILVGD 146 (321)
T ss_dssp EEEEEESS-EEEE--EEETTEEEEEETTE----------EEEEEEETTS-SEEEEEEE-BSSSEEEE--EEETTEEEEEE
T ss_pred EEEEeecCcceEh--hhhCCEEEEeecCE----------EEEEEccCcc-cchhhheecceEEEEEE--eccccEEEEEE
Confidence 1 1122233333 23245566666542 6899998776 12222221112344444 44577999888
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEE-eCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
... .+.++..+... ..+..+.. .....+.++.+-++++.++++.. +|.|.++...
T Consensus 147 ~~~---sv~~~~~~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~---~gnl~~l~~~ 202 (321)
T PF03178_consen 147 AMK---SVSLLRYDEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDK---DGNLFVLRYN 202 (321)
T ss_dssp SSS---SEEEEEEETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEET---TSEEEEEEE-
T ss_pred ccc---CEEEEEEEccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcC---CCeEEEEEEC
Confidence 766 68887665422 12333333 22446788888877777777777 8999998776
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.31 Score=47.02 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=95.2
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+-...++++.|+|+.+.|.+.....-.|..+...+..+.+++..+ ...|.+.-+|+|.++--.+ +.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~----------~~ 151 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERD----------RA 151 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhc----------ce
Confidence 3444558999999999998888887754444443788888887554 5678899999999988887 78
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCC-cCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecc---------
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGG-VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LID--------- 354 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~--------- 354 (712)
+.++.+..+..+..+... .+..+.... -.|. .-++|.| .+..|...- .+-+.||.+.... .+.
T Consensus 152 l~~~~vd~~t~~~~~~~~--~i~L~~~~k~N~Gf--EGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 152 LYLFTVDADTTVISAKVQ--KIPLGTTNKKNKGF--EGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEEEEEcCCccEEeccce--EEeccccCCCCcCc--eeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 888887655333222221 111111111 1222 2589999 777766666 6777777665221 110
Q ss_pred cccccccCeeeEEECCCCCeEEE
Q 005140 355 KKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
...+....|.++.|.+....|.+
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred ccceEeeccccceecCCCCcEEE
Confidence 01122345778888877555554
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.32 Score=54.65 Aligned_cols=135 Identities=12% Similarity=0.128 Sum_probs=80.8
Q ss_pred CCCeEEEEEecCCccceeeeeeeeecceeEEECcCC-------CEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005140 386 NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG-------DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 458 (712)
Q Consensus 386 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-------~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 458 (712)
...-.|+.+|+..++.+....+..... -..+.|+. ...++|.+++. +..|+.+..+..+..-.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~---------lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNS---------LFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCc---------eEEeccCCCCCceeecc
Confidence 356679999999998887766544221 11223332 12233333332 34444444332211101
Q ss_pred e--cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccC
Q 005140 459 L--DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 459 l--~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~ 534 (712)
. ........|++-+.+| +||+|+.+| .|++||--... .-..++ +.+|.++..+.||++|+..+
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G---~IRLyd~~g~~------AKT~lp~lG~pI~~iDvt~DGkwilaTc--- 637 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKG---DIRLYDRLGKR------AKTALPGLGDPIIGIDVTADGKWILATC--- 637 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCC---cEEeecccchh------hhhcCCCCCCCeeEEEecCCCcEEEEee---
Confidence 1 1234456777776665 789999999 99999942211 222333 56899999999999999887
Q ss_pred CCceEEEEEC
Q 005140 535 FNGQLEFYNV 544 (712)
Q Consensus 535 ~dg~v~iwd~ 544 (712)
+..|.+++.
T Consensus 638 -~tyLlLi~t 646 (794)
T PF08553_consen 638 -KTYLLLIDT 646 (794)
T ss_pred -cceEEEEEE
Confidence 577888775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0073 Score=38.48 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=29.7
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEee
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG 240 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~ 240 (712)
...+..|...+.+++|+|++.++++++.++ +.+|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345567788899999999999999999998 77885
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.99 Score=46.11 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=85.9
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY- 251 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~- 251 (712)
...+|...+..|++++|.-+.+.-..+...-+...--...+.+.++.||+|.+.||.-..+. |.+.+.. ..+.....
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHH
Confidence 45666667777888887766655444444444444445567999999999999999998887 7788774 22222222
Q ss_pred -----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 252 -----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 252 -----~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
....|....|+.+ .-+|..+.. | +-+|-+... +.+|..+.+...+ .| ..
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~----------G-~e~y~v~pekrslRlVks~~~nv-----------nW--y~ 160 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQ----------G-IEFYQVLPEKRSLRLVKSHNLNV-----------NW--YM 160 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecC----------C-eEEEEEchhhhhhhhhhhcccCc-----------cE--EE
Confidence 2334899999877 445555544 3 667765433 3455555554443 36 57
Q ss_pred ecCCCCCEEE
Q 005140 326 WGGGKDKYFA 335 (712)
Q Consensus 326 ~s~~dg~~la 335 (712)
|.+ +...+.
T Consensus 161 yc~-et~v~L 169 (657)
T KOG2377|consen 161 YCP-ETAVIL 169 (657)
T ss_pred Ecc-ccceEe
Confidence 888 776443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.4 Score=43.48 Aligned_cols=247 Identities=13% Similarity=0.150 Sum_probs=117.3
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCcee---cccc----cccccCeeeEEECCC----CCeEEEEeec-CCCCCCCeE
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTL---IDKK----SLKVENVMDFSWSPT----DPIISLFVPE-LGGGNQPAR 390 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~sp~----~~~la~~~~~-~~~~~~~~~ 390 (712)
.++|.| ||+++++-..|.|.+++ ..+.. +... .....+...++++|+ +.+.++++.. ........+
T Consensus 6 ~~a~~p-dG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLP-DGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEET-TSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeC-CCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 589999 99998877799999999 33332 1111 112246899999995 3444443321 111233445
Q ss_pred EEEEecCCc-------ccee-eeee---eeecceeEEECcCCCEEEEEEccccc--cccc-ccccEEEEEEecCCcc---
Q 005140 391 VSLVQIPSK-------EELR-QKNL---FSVSDCKMYWQSSGDYLAVKVDRYTK--TKKS-TYTGFELFRIKERDIP--- 453 (712)
Q Consensus 391 i~~~~~~~~-------~~~~-~~~~---~~~~~~~~~~s~~g~~l~~~~~~~~~--~~~~-~~~~~~l~~l~~~~~~--- 453 (712)
|..+..... +.+. .... .......|.|.|+| +|++...+... ..+. ....-.++++...+..
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~d 162 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPAD 162 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TT
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCC
Confidence 666655433 1111 1111 11223457899999 55554444332 0111 1112256677654431
Q ss_pred ----------eeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeeccccc---------------------
Q 005140 454 ----------IEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHA--------------------- 501 (712)
Q Consensus 454 ----------~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~--------------------- 501 (712)
.+.... ++ .....++|+|. |..+++-.+... .=.|.-+..+...
T Consensus 163 nP~~~~~~~~~~i~A~-Gl-RN~~~~~~d~~tg~l~~~d~G~~~--~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAY-GL-RNPFGLAFDPNTGRLWAADNGPDG--WDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp STTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSS--SEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CccccCCCceEEEEEe-CC-CccccEEEECCCCcEEEEccCCCC--CcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 111111 22 34557999998 777665544321 1222223322110
Q ss_pred --CceeEEEEeCCC-ceeEEEEcc-------CCCeEEEEeccCCCceEEEEECCcceeee-e-----ccccceeeEEECC
Q 005140 502 --GRVSKLTTLKGK-QANALFWSP-------SGRFIVLAGLKGFNGQLEFYNVDELETMA-T-----AEHFMATDVEWDP 565 (712)
Q Consensus 502 --~~~~~~~~~~~~-~v~~l~~sp-------dg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~-----~~~~~v~~~~~sp 565 (712)
.-..++..+..+ .+..+.|-. .|.+++..-. .+.|....++....+. . .....+.++++.|
T Consensus 239 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 239 CPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG---GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp -TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT---TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCCcCccceeecCccccCceEEECCccCccccCcEEEecCC---CCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 001133333333 345555543 3344444332 5677777766332221 1 1224788999999
Q ss_pred CCCEEEEEEccceeccccE
Q 005140 566 TGRYVATAVTSVHEMENGF 584 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v 584 (712)
||...++... ++.|
T Consensus 316 DG~Lyv~~d~-----~G~i 329 (331)
T PF07995_consen 316 DGALYVSDDS-----DGKI 329 (331)
T ss_dssp TSEEEEEE-T-----TTTE
T ss_pred CCeEEEEECC-----CCeE
Confidence 9987777666 5655
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.02 Score=58.23 Aligned_cols=69 Identities=20% Similarity=0.443 Sum_probs=56.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-+.+|-+.|||+ ...+++|.+.|+-. .|+.++|.||.|+ .+++.|=|||.|++.+.|++|+.. |...+.
T Consensus 102 ~d~vVRLRGLPf------scte~dI~~FFaGL-~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG 170 (510)
T KOG4211|consen 102 NDGVVRLRGLPF------SCTEEDIVEFFAGL-EIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIG 170 (510)
T ss_pred CCceEEecCCCc------cCcHHHHHHHhcCC-cccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhc
Confidence 456999999997 55589999999966 4445579999998 788999999999999999999874 334444
|
|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.022 Score=59.55 Aligned_cols=68 Identities=22% Similarity=0.423 Sum_probs=53.1
Q ss_pred HHHHHHhhccCeeeeceEEEecc-C--CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccc
Q 005140 80 GVIRKIYSQIGVIKEDGLWMPVD-P--ETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 80 ~~l~~~f~~~g~v~~~~~~~~~d-~--~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~ 151 (712)
++++.-+++||.|.. |.+|.+ . ...-.-|--||+|++.+++++|...|+|.++.++ ..|..+-+.++|
T Consensus 424 Edvr~ec~k~g~v~~--v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR--tVvtsYydeDkY 494 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRS--VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR--TVVASYYDEDKY 494 (500)
T ss_pred HHHHHHhcccCceeE--EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc--EEEEEecCHHHh
Confidence 446666999999999 999988 2 2345567889999999999999999999999986 334444444554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.83 E-value=3.8 Score=44.96 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=63.2
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec---cccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA---EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~---~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
..+..+..||+.++|+.-.. .|.+.+-+.+..+.+... .+...-.++|..+...+++ . +..+.+..-
T Consensus 217 ~~~~ki~VS~n~~~laLyt~---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~--~-----e~~l~lvgp 286 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTE---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLS--W-----EVNLMLVGP 286 (829)
T ss_pred ceEEEEEEcCCcceEEEEec---CCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEE--E-----eeeEEEEcC
Confidence 45778999999999999887 999999988865555432 2334447888877632222 2 345555555
Q ss_pred cCceeeeecccceeeeEEecCCCCCCChhhHHHH
Q 005140 590 NGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 590 ~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.|..+.-.....+. +.--+||-.++|.+...-+
T Consensus 287 ~gd~V~f~yd~t~~-l~~E~DGVRI~t~t~~EFl 319 (829)
T KOG2280|consen 287 PGDSVQFYYDETAI-LSAEVDGVRIITSTSHEFL 319 (829)
T ss_pred CCCccccccCCCce-eeeccCeeEEeccchHHHH
Confidence 55444322222222 6666788788876655443
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.026 Score=57.52 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=53.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
...|-+.|||+ ..++++|.+.|+.++ |.. +.++.+ +|++.|=|||+|.+.|++++|+++ |-..+..
T Consensus 10 ~~~vr~rGLPw------sat~~ei~~Ff~~~~-I~~--~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~ 75 (510)
T KOG4211|consen 10 AFEVRLRGLPW------SATEKEILDFFSNCG-IEN--LEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGH 75 (510)
T ss_pred ceEEEecCCCc------cccHHHHHHHHhcCc-eeE--EEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCC
Confidence 34889999999 666999999999886 455 556654 799999999999999999999984 4444443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.3 Score=43.88 Aligned_cols=238 Identities=13% Similarity=0.164 Sum_probs=103.4
Q ss_pred CCCEEEEec--CCeEEEEEcCCce----e---cccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 330 KDKYFAKLG--KNMISVYETESFT----L---IDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 330 dg~~la~~~--d~~i~iwd~~~~~----~---~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
+.++|+..+ ++.|.|.|+.+.- + +....+ .......+..-|+|.++++..... .+++.+.+.+++.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~-~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDA-DGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEET-TS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCC-CCCCCCcEEEEcC
Confidence 456777777 8999999987421 1 111001 112234556678887777654432 2477778888888
Q ss_pred CCccceeeeeee---eecceeEEECcCCCEEEEEEcccc-----------cccccccccEEEEEEecCCcceeEEEecCC
Q 005140 397 PSKEELRQKNLF---SVSDCKMYWQSSGDYLAVKVDRYT-----------KTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 397 ~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~~~~~~~-----------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
.+.......... ..-...+-|+|.-+.+++..-... .....+-..+.+|++... .....+.+...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeEEecCCC
Confidence 776554433221 122334567887777776533211 011123346889988764 23344555221
Q ss_pred CCceEEEEE--eeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCC-------------------ceeEEEE
Q 005140 463 NDKIIAFAW--EPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------------------QANALFW 520 (712)
Q Consensus 463 ~~~v~~~~~--sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------------------~v~~l~~ 520 (712)
...+..+.| .|+..+=.+++. .+ +|..|--.. .+....+.+..++.. -++.|.+
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss---~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSS---SIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--E---EEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCceEEEEecCCCCccceEEEEeccc---eEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 122334444 454444333333 33 454443321 122223344444321 2588999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcc---eeeee---------cc---------ccceeeEEECCCCCEEEEEEc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDEL---ETMAT---------AE---------HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~---~~~~~---------~~---------~~~v~~~~~spdg~~l~t~s~ 575 (712)
|.|.++|.+++. ..|.|+.||+..- +++.+ .. .+...-+..|-||+.|...++
T Consensus 320 SlDDrfLYvs~W--~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 320 SLDDRFLYVSNW--LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS-EEEEEET--TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCEEEEEcc--cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999999999987 4899999999841 22211 00 123356889999998877665
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.026 Score=58.30 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=52.6
Q ss_pred hHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCC
Q 005140 78 LEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPD 156 (712)
Q Consensus 78 ~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 156 (712)
..+++.+-.++||.|. +|-+|+ .+-|+-||.|.+.+.|..|++.|||..|+|+ .++...+....-+..+|+
T Consensus 466 I~edV~Eec~k~g~v~----hi~vd~---ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr-~Ita~~~~~~~Y~~~FP~ 536 (549)
T KOG0147|consen 466 IREDVIEECGKHGKVC----HIFVDK---NSAGCVYVRCPSAEAAGTAVKALHGRWFAGR-MITAKYLPLERYHSKFPD 536 (549)
T ss_pred HHHHHHHHHHhcCCee----EEEEcc---CCCceEEEecCcHHHHHHHHHHHhhhhhccc-eeEEEEeehhhhhhhCCC
Confidence 3455556669999994 455565 3449999999999999999999999999996 777766544333333444
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.11 Score=56.15 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=63.4
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
-..++|-|.|..++|...|...+ ...|+.+. ++|-.-..|... .+...... ..+|.- ....+|
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~-----S~~ViFfE-rNGLrHGef~lr-----~~~dEk~~-----~~~wn~-~s~vla 311 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCST-----SESVIFFE-RNGLRHGEFDLR-----VGCDEKAF-----LENWNL-LSTVLA 311 (1243)
T ss_pred hhccccccCCceeeeeccCCCCC-----cceEEEEc-cCCcccCCcccc-----CCchhhhh-----hhhhhH-HHHHHH
Confidence 34689999999999988662221 13566665 344322222111 00111112 356666 666677
Q ss_pred EecCCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 336 KLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 336 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
.+..+.+.+|-..+....-+.....+++.-+.|+|....
T Consensus 312 v~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 312 VAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred HhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCc
Confidence 666899999988876655556677888999999997543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.46 E-value=3.8 Score=42.44 Aligned_cols=236 Identities=12% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcC-eEEecCCCCCEEEEec
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKDKYFAKLG 338 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~dg~~la~~~ 338 (712)
+-++|+..+... +.|.|+|+.+. +..+.+....-.. ..+++.| .+..-| +|.+++++-
T Consensus 86 ~Rr~Li~PgL~S---------srIyviD~~~dPr~P~l~KvIe~~ev~~-------k~g~s~PHT~Hclp-~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRS---------SRIYVIDTKTDPRKPRLHKVIEPEEVFE-------KTGLSRPHTVHCLP-DGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT-----------EEEEE--S-TTS-EEEEEE-HHHHHH-------HH-EEEEEEEEE-S-S--EEEEEE
T ss_pred cCCcEEeeeecc---------CcEEEEECCCCCCCCceEeeeCHHHHHh-------hcCCCCCceeeecC-CccEEEEec
Confidence 457888877552 68999998643 2333332200000 0011111 234457 887776653
Q ss_pred -------CCeEEEEEcCCceeccccccc---ccCeeeEEECCCCCeEEEEeec------CCC--CC-----CCeEEEEEe
Q 005140 339 -------KNMISVYETESFTLIDKKSLK---VENVMDFSWSPTDPIISLFVPE------LGG--GN-----QPARVSLVQ 395 (712)
Q Consensus 339 -------d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~------~~~--~~-----~~~~i~~~~ 395 (712)
.|.+.++|-+++.+...-... ..--.++-|.|..+.+++..-. .|- .+ ---++.+|+
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD 228 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWD 228 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEE
Confidence 356888888877766433221 1224678889988877762100 000 00 113678888
Q ss_pred cCCccceeeeeeeee----cceeEEECcCCCEEEEEEcccccccccccccEEEEEEec--CC-cc-eeEEEecCC-----
Q 005140 396 IPSKEELRQKNLFSV----SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RD-IP-IEVLELDNK----- 462 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~----~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~-~~-~~~~~l~~h----- 462 (712)
..+++.+....+... -.+++.+.|+..+-++++.-.. .+|.+.. .+ -. ...++++..
T Consensus 229 ~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss----------~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 229 WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSS----------SIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--E----------EEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccc----------eEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 888887777666532 2345566777776555444221 2333322 11 11 111222211
Q ss_pred ------------CCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC-CC---------------
Q 005140 463 ------------NDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--------------- 513 (712)
Q Consensus 463 ------------~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--------------- 513 (712)
..-|+.+.+|.|.++|.++.- .| .|+.||+...... +++..+. ++
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G---dvrqYDISDP~~P---kl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG---DVRQYDISDPFNP---KLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTT---EEEEEE-SSTTS----EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCC---cEEEEecCCCCCC---cEEeEEEECcEeccCCCcccccccc
Confidence 244789999999999998876 56 8999999764332 2333221 11
Q ss_pred --ceeEEEEccCCCeEEEEec
Q 005140 514 --QANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 514 --~v~~l~~spdg~~l~~~~~ 532 (712)
...-+..|-||+.|.+.+.
T Consensus 373 ~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -S----EEE-TTSSEEEEE--
T ss_pred CCCCCeEEEccCCeEEEEEee
Confidence 1245888999999988753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.2 Score=36.57 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=56.8
Q ss_pred eEEEEEee-CC---CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 466 IIAFAWEP-KG---HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 466 v~~~~~sp-~g---~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
|+++++.. +| +.|++++.|. .|++|+-.. .+..+. ...+.+++-...++ ++.+-. +|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~---~IRvf~~~e--------~~~Ei~e~~~v~~L~~~~~~~-F~Y~l~---NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDF---EIRVFKGDE--------IVAEITETDKVTSLCSLGGGR-FAYALA---NGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCc---EEEEEeCCc--------EEEEEecccceEEEEEcCCCE-EEEEec---CCEEE
Confidence 55666655 32 5889999999 999998532 455554 44678877777654 555655 89999
Q ss_pred EEECCcceeeeeccccceeeEEE-CC--CCC-EEEEEEc
Q 005140 541 FYNVDELETMATAEHFMATDVEW-DP--TGR-YVATAVT 575 (712)
Q Consensus 541 iwd~~~~~~~~~~~~~~v~~~~~-sp--dg~-~l~t~s~ 575 (712)
+|+-... +-.......++++++ +. ||. -|++|-.
T Consensus 67 vY~~~~R-lWRiKSK~~~~~~~~~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 67 VYDRSQR-LWRIKSKNQVTSMAFYDINGDGVPELIVGWS 104 (111)
T ss_pred EEeCcce-eeeeccCCCeEEEEEEcCCCCCceEEEEEec
Confidence 9976522 222222223444433 33 333 4666665
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.074 Score=48.77 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=62.3
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.....++++.|||. +.....|..+|.+|.--.+ +.+.-. .+|.|||+|.+...|.-|...+.|..+.
T Consensus 143 ~ppn~ilf~~niP~------es~~e~l~~lf~qf~g~ke--ir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIPS------ESESEMLSDLFEQFPGFKE--IRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCCc------chhHHHHHHHHhhCcccce--eEeccC-----CCceeEEecchhhhhHHHhhhhccceec
Confidence 44678999999998 5558889999999987777 766543 4589999999999999999999999887
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
..|...+..
T Consensus 210 ~~~~m~i~~ 218 (221)
T KOG4206|consen 210 KKNTMQITF 218 (221)
T ss_pred cCceEEecc
Confidence 777776654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.51 Score=38.66 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred eeEEEecC---CC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 256 VKLIDFSP---GE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 256 v~~i~~Sp---dg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|++++++. || +.|+.|+.| ..|+||+ ....+..+.-..... .+.-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D----------~~IRvf~--~~e~~~Ei~e~~~v~--------------~L~~~~-~~ 54 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD----------FEIRVFK--GDEIVAEITETDKVT--------------SLCSLG-GG 54 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC----------cEEEEEe--CCcEEEEEecccceE--------------EEEEcC-CC
Confidence 56666654 33 689999999 8999997 557777776665544 455555 54
Q ss_pred CEEEEec-CCeEEEEEcC
Q 005140 332 KYFAKLG-KNMISVYETE 348 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~ 348 (712)
.|+.+. +|+|-+|+-.
T Consensus 55 -~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 55 -RFAYALANGTVGVYDRS 71 (111)
T ss_pred -EEEEEecCCEEEEEeCc
Confidence 455555 9999999754
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.19 E-value=6 Score=43.14 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEecCCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~d~~i~ 343 (712)
+..++.++.+ +.|.-.|..+|+.+-.+........ ....+ +.-+ +.. . + +..++...++.|.
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~--~~~~~--~~~g-~~~-~-~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADR--GCCDV--VNRG-VAY-W-DPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccc--ccccc--ccCC-cEE-c-cCCeEEEecCCCeEE
Confidence 4456666767 7888999999988777654432100 00000 0000 111 1 3 4444433499999
Q ss_pred EEEcCCceecccccc
Q 005140 344 VYETESFTLIDKKSL 358 (712)
Q Consensus 344 iwd~~~~~~~~~~~~ 358 (712)
-+|..+|+.+.+...
T Consensus 124 AlD~~TG~~~W~~~~ 138 (488)
T cd00216 124 ALDAETGKQVWKFGN 138 (488)
T ss_pred EEECCCCCEeeeecC
Confidence 999999988866543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4210 consensus Nuclear localization sequence binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.013 Score=57.76 Aligned_cols=70 Identities=17% Similarity=0.360 Sum_probs=58.4
Q ss_pred CCCEEE-ECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIV-VDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~-v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-...++ |.+|+. ...+.+|.+.|..+|.|.. +.+|.++.++..+|||+|.|.....+..|+.. ....+.+
T Consensus 183 ~s~~~~~~~~~~f------~~~~d~~~~~~~~~~~i~~--~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~ 253 (285)
T KOG4210|consen 183 PSDTIFFVGELDF------SLTRDDLKEHFVSSGEITS--VRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG 253 (285)
T ss_pred ccccceeeccccc------ccchHHHhhhccCcCccee--eccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC
Confidence 344555 999997 3347888899999999999 99999999999999999999999999888775 5555554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.063 Score=36.47 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=30.5
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
..|..++|+|....||.++. +|.|.|+.++++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~-----~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTE-----DGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEEC-----CCeEEEEECCCcCc
Confidence 56889999999999999999 99999999987654
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=7 Score=42.60 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=113.2
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+-.++.|||+++||.+-.. .+...-++++-|+.+|..+......... .++|.+ |++.|.
T Consensus 131 Lg~~~~s~D~~~la~s~D~-----~G~e~y~lr~kdL~tg~~~~d~i~~~~~---------------~~~Wa~-d~~~lf 189 (682)
T COG1770 131 LGAASISPDHNLLAYSVDV-----LGDEQYTLRFKDLATGEELPDEITNTSG---------------SFAWAA-DGKTLF 189 (682)
T ss_pred eeeeeeCCCCceEEEEEec-----ccccEEEEEEEecccccccchhhccccc---------------ceEEec-CCCeEE
Confidence 6788899999999876544 1222368999999999865543322111 589999 998776
Q ss_pred Eec--CC--eEEEEEcCCce--ecccccccccC---eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 336 KLG--KN--MISVYETESFT--LIDKKSLKVEN---VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 336 ~~~--d~--~i~iwd~~~~~--~~~~~~~~~~~---v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
... ++ .-++|-..-+. .......+... ..++.-+.+..+|+.. .+...+..+++++..........-
T Consensus 190 Yt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~----~~~~~tsE~~ll~a~~p~~~p~vv 265 (682)
T COG1770 190 YTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVIS----LGSHITSEVRLLDADDPEAEPKVV 265 (682)
T ss_pred EEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEE----cCCCcceeEEEEecCCCCCceEEE
Confidence 665 22 23444332222 11111111111 2233334456666653 224455667776654432111111
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
..........-...|.+++..++...+ ++.|+.......+.....+..|...+.--.++--..+|+....++.
T Consensus 266 ~pr~~g~eY~~eh~~d~f~i~sN~~gk-------nf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~g 338 (682)
T COG1770 266 LPRENGVEYSVEHGGDRFYILSNADGK-------NFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEG 338 (682)
T ss_pred EEcCCCcEEeeeecCcEEEEEecCCCc-------ceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccC
Confidence 111111222223345666655554331 2455554431111222334467777666667777788888888776
Q ss_pred CCeEEEEEeeccc
Q 005140 487 RPDISFYSMRTAQ 499 (712)
Q Consensus 487 ~~~v~i~d~~~~~ 499 (712)
.+.|.+++.+++.
T Consensus 339 lp~v~v~~~~~~~ 351 (682)
T COG1770 339 LPRVVVRDRKTGE 351 (682)
T ss_pred CceEEEEecCCCc
Confidence 7789999886554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.072 Score=33.52 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=28.6
Q ss_pred ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 459 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 459 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
+..|...|.+++|+|.+..+++++.++ .+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~---~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDG---TIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCC---eEEEcC
Confidence 346788999999999999999999998 899885
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.13 Score=51.20 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|.|.||-. ...+...|.-+|+-||.|.+ |.|...+ + --|.|.|.+...|+.|+..|+|..+.++
T Consensus 297 n~vllvsnln~-----~~VT~d~LftlFgvYGdVqR--Vkil~nk--k---d~ALIQmsd~~qAqLA~~hL~g~~l~gk- 363 (492)
T KOG1190|consen 297 NVVLLVSNLNE-----EAVTPDVLFTLFGVYGDVQR--VKILYNK--K---DNALIQMSDGQQAQLAMEHLEGHKLYGK- 363 (492)
T ss_pred ceEEEEecCch-----hccchhHHHHHHhhhcceEE--EEeeecC--C---cceeeeecchhHHHHHHHHhhcceecCc-
Confidence 68899999983 02236679999999999999 9888765 2 3599999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++|..-+
T Consensus 364 ~lrvt~SK 371 (492)
T KOG1190|consen 364 KLRVTLSK 371 (492)
T ss_pred eEEEeecc
Confidence 77776644
|
|
| >PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT [] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.13 Score=41.43 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=48.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEE-EeccC------CCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLW-MPVDP------ETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~-~~~d~------~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
++-|.|=|-|. . ....+.+.|++||.|.+ .. +..+. ..-.....--|.|.++.+|.+|+. -||
T Consensus 6 ~~wVtVFGfp~------~-~~~~Vl~~F~~~G~Ile--~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG 75 (100)
T PF05172_consen 6 ETWVTVFGFPP------S-ASNQVLRHFSSFGTILE--HFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNG 75 (100)
T ss_dssp CCEEEEE---G------G-GHHHHHHHHHCCS-EEC--EEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTT
T ss_pred CeEEEEEccCH------H-HHHHHHHHHHhcceEEE--eecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCC
Confidence 34688888885 2 26668889999999988 53 11110 001233589999999999999988 599
Q ss_pred CccCCceEEEEEe
Q 005140 132 YKLDRAHIFAVNM 144 (712)
Q Consensus 132 ~~~~~~~~l~v~~ 144 (712)
..+.+.-..-|..
T Consensus 76 ~i~~g~~mvGV~~ 88 (100)
T PF05172_consen 76 TIFSGSLMVGVKP 88 (100)
T ss_dssp EEETTCEEEEEEE
T ss_pred eEEcCcEEEEEEE
Confidence 9998863333433
|
This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=8.8 Score=43.64 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=68.6
Q ss_pred ceEEeecccCcceeeeecCC-CeeEEEecCCCC-------EEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHP-QVKLIDFSPGEK-------YLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSA 305 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~-------~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~ 305 (712)
++.-.|++ .++.+..+... .+.-..+.|+.+ ..+.|-.+ ..+..||.+-. ..+..-..+.
T Consensus 505 ~ly~mDLe-~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~----------n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 505 KLYKMDLE-RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSD----------NSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEEEecC-CCcEEEEeecCCCcceeEecccccccccCCCceEEEECC----------CceEEeccCCCCCceeeccccc
Confidence 36677888 88888877533 344455555432 22334444 56889998642 2221111111
Q ss_pred cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEE
Q 005140 306 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
. ..+..+.|++-+. +| +||.++ +|.|++||-...+....+..-..+|.++..+.||++|+.
T Consensus 574 Y---------~~~~~Fs~~aTt~-~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 574 Y---------SSKNNFSCFATTE-DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred c---------ccCCCceEEEecC-Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 1 1112244666666 65 556666 999999995432211111122346999999999999985
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.12 Score=35.17 Aligned_cols=32 Identities=6% Similarity=0.163 Sum_probs=28.7
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV 297 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~ 297 (712)
.|.+++|||....||.+..+ |.|.|+.+ +++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~----------g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTED----------GEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECCCCCEEEEEECC----------CeEEEEEC-CCcC
Confidence 49999999999999999999 99999997 6654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.6 Score=42.17 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=73.8
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCce-EEeecc-cCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQGA-AVWGGA-NTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~i-~iw~~~-~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
..-...+..+.-++||+|+|++....+ .-|+.- +...+..+.....|.+|.|+|++...+.+ .. +.|
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G----------g~~ 209 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG----------GQI 209 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT----------TEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC----------cEE
Confidence 444567888899999999999977775 477643 23555566556679999999998876655 55 566
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc--c-ccCee
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL--K-VENVM 364 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~--~-~~~v~ 364 (712)
+.=+. .....++..+.... ...+...-.++|.+ ++...|+++.|.+ +...+.|+.-.+... . ...+.
T Consensus 210 ~~s~~--~~~~~~w~~~~~~~------~~~~~~~ld~a~~~-~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~ 279 (302)
T PF14870_consen 210 QFSDD--PDDGETWSEPIIPI------KTNGYGILDLAYRP-PNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLY 279 (302)
T ss_dssp EEEE---TTEEEEE---B-TT------SS--S-EEEEEESS-SS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---
T ss_pred EEccC--CCCccccccccCCc------ccCceeeEEEEecC-CCCEEEEeCCccE-EEeCCCCccceECccccCCCCceE
Confidence 66551 11222222211110 00111111679999 9999998888865 345555543322211 2 23477
Q ss_pred eEEECCCCCeEEE
Q 005140 365 DFSWSPTDPIISL 377 (712)
Q Consensus 365 ~~~~sp~~~~la~ 377 (712)
.+.|.+..+-+++
T Consensus 280 ~i~f~~~~~gf~l 292 (302)
T PF14870_consen 280 RIVFVNPDKGFVL 292 (302)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEcCCCceEEE
Confidence 7777766666665
|
|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.12 Score=53.24 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhh-ccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYS-QIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 128 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~-~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~ 128 (712)
+...+|||||||. ...-.+|..||. -||.|.- +-|=+|++-+-+||-|=|+|++...-.+||..
T Consensus 368 DprrTVFVGgvpr------pl~A~eLA~imd~lyGgV~y--aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPR------PLTAEELAMIMEDLFGGVLY--VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCC------cchHHHHHHHHHHhcCceEE--EEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3568999999997 444777999999 5999988 77888877889999999999999988888874
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.12 Score=58.04 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=59.0
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee---cCC--CeeE
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY---AHP--QVKL 258 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~--~v~~ 258 (712)
.+++++.+.+...+....-.+...-.+-..+|++++|+.+|+.++.|..+| |.+||.. ..+.+..+ .++ +|..
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeeecCCccceEEE
Confidence 344555555544333212233233344568999999999999999999999 7799999 65555444 233 4666
Q ss_pred EEecCCCCEEEEEcCC
Q 005140 259 IDFSPGEKYLVTYSSH 274 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d 274 (712)
+.+..++..++++...
T Consensus 181 v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTG 196 (1206)
T ss_pred EEEeCCCcEEEEccCC
Confidence 7777777777777766
|
|
| >KOG1996 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.13 Score=48.79 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=52.5
Q ss_pred hhHHHHHHHhhccCeeeeceEEEeccCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeeccccccc
Q 005140 77 KLEGVIRKIYSQIGVIKEDGLWMPVDPETQKS-LGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 77 ~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~-~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~ 152 (712)
-|+..+.+-+++||+|.. |.|-.++.--.. .---||+|+..++|.+|+-.|||..|+|+ +.+.+.+ +.++|.
T Consensus 298 elede~keEceKyg~V~~--viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr-~v~A~Fy-n~ekfs 370 (378)
T KOG1996|consen 298 ELEDETKEECEKYGKVGN--VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR-VVSACFY-NLEKFS 370 (378)
T ss_pred HHHHHHHHHHHhhcceee--EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce-eeeheec-cHHhhh
Confidence 477888888999999988 766555411111 22489999999999999999999999986 6655543 445544
|
|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.094 Score=54.00 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=47.8
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC---CCCCccc---EEEEEeCCHHHHHHHHHH
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP---ETQKSLG---YCFIEYNTPQEAELAKEK 128 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~---~~~~~~g---~~fv~~~~~~~a~~a~~~ 128 (712)
..++++|||+|||. +..|+.|...|..||.+.- ..|.-. .---++| |+|+.|+++..-...+..
T Consensus 256 ~~~S~KVFvGGlp~------dise~~i~~~F~~FGs~~V---dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPW------DITEAQINASFGQFGSVKV---DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccccceeecCCCc------cccHHHHHhhcccccceEe---ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 44899999999998 7779999999999998644 455311 1123477 999999998766655443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.5 Score=44.13 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred ceeEEECcCCCEEEEEEccccccccc-ccccEEEEEEec---CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKS-TYTGFELFRIKE---RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~-~~~~~~l~~l~~---~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
...|+|.++|+.+++-..+....... ....-+|+.+.. .+.......+...-...+.+++.++| .++ +...
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~--- 90 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP--- 90 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC---
Confidence 34567888888665543221110000 000114444443 22222222222223456789999988 444 3332
Q ss_pred CeEEEE-Eeeccc-ccCcee-EEEEeCC------CceeEEEEccCCCeEEEEeccC----------------CCceEEEE
Q 005140 488 PDISFY-SMRTAQ-HAGRVS-KLTTLKG------KQANALFWSPSGRFIVLAGLKG----------------FNGQLEFY 542 (712)
Q Consensus 488 ~~v~i~-d~~~~~-~~~~~~-~~~~~~~------~~v~~l~~spdg~~l~~~~~~~----------------~dg~v~iw 542 (712)
.|..| +..... ...+.+ .+..+.. +..+.+.|.|||++.++.+... ..|.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 45444 332111 110111 2233322 3467899999998776554210 12556666
Q ss_pred ECCcceeeee-ccccceeeEEECCCCCEEEEEE
Q 005140 543 NVDELETMAT-AEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 543 d~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s 574 (712)
+.++.+.... ........++|+|+|+.+++-.
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6664432211 2234567899999999876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 712 | ||||
| 2nlw_A | 105 | Solution Structure Of The Rrm Domain Of Human Eukar | 8e-17 | ||
| 2krb_A | 81 | Solution Structure Of Eif3b-Rrm Bound To Eif3j Pept | 7e-12 | ||
| 3ns6_A | 100 | Crystal Structure Of Hte Rna Recognition Motif Of Y | 5e-04 |
| >pdb|2NLW|A Chain A, Solution Structure Of The Rrm Domain Of Human Eukaryotic Initiation Factor 3b Length = 105 | Back alignment and structure |
|
| >pdb|2KRB|A Chain A, Solution Structure Of Eif3b-Rrm Bound To Eif3j Peptide Length = 81 | Back alignment and structure |
|
| >pdb|3NS6|A Chain A, Crystal Structure Of Hte Rna Recognition Motif Of Yeast Eif3b Residues 76-170 Length = 100 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.98 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.98 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.98 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.98 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.94 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.94 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.92 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 3ns6_A | 100 | Eukaryotic translation initiation factor 3 subuni; | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.79 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.78 | |
| 2nlw_A | 105 | Eukaryotic translation initiation factor 3 subunit | 99.78 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.74 | |
| 2krb_A | 81 | Eukaryotic translation initiation factor 3 subunit | 99.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 4fxv_A | 99 | ELAV-like protein 1; RNA recognition motif, putati | 99.71 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.7 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.69 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 3s8s_A | 110 | Histone-lysine N-methyltransferase SETD1A; chromat | 99.66 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 2lxi_A | 91 | RNA-binding protein 10; NMR {Homo sapiens} | 99.64 | |
| 2lkz_A | 95 | RNA-binding protein 5; RRM; NMR {Homo sapiens} | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 3md1_A | 83 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.59 | |
| 2wbr_A | 89 | GW182, gawky, LD47780P; DNA-binding protein, RRM, | 99.59 | |
| 3p5t_L | 90 | Cleavage and polyadenylation specificity factor S; | 99.59 | |
| 2x1f_A | 96 | MRNA 3'-END-processing protein RNA15; transcriptio | 99.59 | |
| 3bs9_A | 87 | Nucleolysin TIA-1 isoform P40; RNA recognition mot | 99.58 | |
| 3mdf_A | 85 | Peptidyl-prolyl CIS-trans isomerase E; RRM domain, | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 2dnz_A | 95 | Probable RNA-binding protein 23; RNA recognition m | 99.57 | |
| 1s79_A | 103 | Lupus LA protein; RRM, alpha/beta, RNA binding pro | 99.57 | |
| 1whw_A | 99 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.57 | |
| 4f25_A | 115 | Polyadenylate-binding protein 1; RRM fold, transla | 99.56 | |
| 2cq0_A | 103 | Eukaryotic translation initiation factor 3 subunit | 99.56 | |
| 2j8a_A | 136 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.56 | |
| 1x5u_A | 105 | Splicing factor 3B subunit 4 (spliceosome associat | 99.56 | |
| 2e5h_A | 94 | Zinc finger CCHC-type and RNA-binding motif- conta | 99.55 | |
| 1x5t_A | 96 | Splicing factor 3B subunit 4; structure genomics, | 99.55 | |
| 2jrs_A | 108 | RNA-binding protein 39; RNA binding motif of RBM39 | 99.55 | |
| 2dnm_A | 103 | SRP46 splicing factor; RRM domain, RBD, structural | 99.55 | |
| 2cqc_A | 95 | Arginine/serine-rich splicing factor 10; RNA recog | 99.55 | |
| 2dgs_A | 99 | DAZ-associated protein 1; RRM domain, structural g | 99.55 | |
| 3n9u_C | 156 | Cleavage and polyadenylation specificity factor S; | 99.55 | |
| 1p27_B | 106 | RNA-binding protein 8A; nuclear protein, mRNA spli | 99.55 | |
| 2dgo_A | 115 | Cytotoxic granule-associated RNA binding protein 1 | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 2fy1_A | 116 | RNA-binding motif protein, Y chromosome, family 1 | 99.54 | |
| 1x5s_A | 102 | Cold-inducible RNA-binding protein; structure geno | 99.54 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.54 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.54 | |
| 2la6_A | 99 | RNA-binding protein FUS; structural genomics, nort | 99.54 | |
| 2cqb_A | 102 | Peptidyl-prolyl CIS-trans isomerase E; RNA recogni | 99.54 | |
| 1x4h_A | 111 | RNA-binding protein 28; structural genomics, RRM d | 99.54 | |
| 2dgp_A | 106 | Bruno-like 4, RNA binding protein; RRM domain, str | 99.54 | |
| 3s7r_A | 87 | Heterogeneous nuclear ribonucleoprotein A/B; ferre | 99.53 | |
| 2div_A | 99 | TRNA selenocysteine associated protein; structural | 99.53 | |
| 2cpz_A | 115 | CUG triplet repeat RNA-binding protein 1; RRM doma | 99.53 | |
| 2do4_A | 100 | Squamous cell carcinoma antigen recognized by T- c | 99.53 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.53 | |
| 2mss_A | 75 | Protein (musashi1); RNA-binding domain, RNA bindin | 99.53 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.53 | |
| 1oo0_B | 110 | CG8781-PA, drosophila Y14; RNA recognition motif, | 99.53 | |
| 1x4e_A | 85 | RNA binding motif, single-stranded interacting pro | 99.53 | |
| 2dnh_A | 105 | Bruno-like 5, RNA binding protein; RRM domain, RBD | 99.52 | |
| 4a8x_A | 88 | RNA-binding protein with serine-rich domain 1; tra | 99.52 | |
| 3ucg_A | 89 | Polyadenylate-binding protein 2; ferredoxin-like, | 99.52 | |
| 2cpf_A | 98 | RNA binding motif protein 19; RNA recognition moti | 99.52 | |
| 3ulh_A | 107 | THO complex subunit 4; nuclear protein, RNA bindin | 99.52 | |
| 2a3j_A | 127 | U1 small nuclear ribonucleoprotein A; computationa | 99.52 | |
| 2cph_A | 107 | RNA binding motif protein 19; RNA recognition moti | 99.52 | |
| 2ywk_A | 95 | Putative RNA-binding protein 11; RRM-domain, struc | 99.52 | |
| 2cpe_A | 113 | RNA-binding protein EWS; RNA recognition motif, RR | 99.52 | |
| 2ek1_A | 95 | RNA-binding protein 12; RNA recognition motif, dim | 99.51 | |
| 2kxn_B | 129 | Transformer-2 protein homolog beta; SR protein, RR | 99.51 | |
| 1p1t_A | 104 | Cleavage stimulation factor, 64 kDa subunit; RNA r | 99.51 | |
| 2khc_A | 118 | Testis-specific RNP-type RNA binding protein; RRM, | 99.51 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.51 | |
| 1uaw_A | 77 | Mouse-musashi-1; RNP-type structure, RNA binding p | 99.51 | |
| 2cqp_A | 98 | RNA-binding protein 12; RNA recognition motif, RRM | 99.5 | |
| 2dgx_A | 96 | KIAA0430 protein; RRM domain, structural genomics, | 99.5 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.5 | |
| 1u6f_A | 139 | Tcubp1, RNA-binding protein UBP1; trypanosome, mRN | 99.5 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.49 | |
| 2j76_E | 100 | EIF-4B, EIF4B, eukaryotic translation initiation f | 99.49 | |
| 2m2b_A | 131 | RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio | 99.49 | |
| 2cq4_A | 114 | RNA binding motif protein 23; RRM domain, structur | 99.49 | |
| 2do0_A | 114 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.49 | |
| 2d9p_A | 103 | Polyadenylate-binding protein 3; RRM domain, struc | 99.49 | |
| 2dng_A | 103 | Eukaryotic translation initiation factor 4H; RRM d | 99.49 | |
| 1wi8_A | 104 | EIF-4B, eukaryotic translation initiation factor 4 | 99.49 | |
| 3ex7_B | 126 | RNA-binding protein 8A; protein-RNA complex, mRNA | 99.49 | |
| 1sjq_A | 105 | Polypyrimidine tract-binding protein 1; babbab mot | 99.49 | |
| 1h2v_Z | 156 | 20 kDa nuclear CAP binding protein; CAP-binding-co | 99.49 | |
| 2ki2_A | 90 | SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA | 99.49 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.49 | |
| 2kt5_A | 124 | RNA and export factor-binding protein 2; chaperone | 99.49 | |
| 2dhg_A | 104 | TRNA selenocysteine associated protein (SECP43); R | 99.48 | |
| 2rs2_A | 109 | Musashi-1, RNA-binding protein musashi homolog 1; | 99.48 | |
| 1wez_A | 102 | HnRNP H', FTP-3, heterogeneous nuclear ribonucleop | 99.48 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.48 | |
| 3r27_A | 100 | HnRNP L, heterogeneous nuclear ribonucleoprotein L | 99.48 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.48 | |
| 2dgv_A | 92 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.48 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.47 | |
| 2hgl_A | 136 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.47 | |
| 2cpi_A | 111 | CCR4-NOT transcription complex subunit 4; RNA reco | 99.47 | |
| 1iqt_A | 75 | AUF1, heterogeneous nuclear ribonucleoprotein D0; | 99.47 | |
| 2cqd_A | 116 | RNA-binding region containing protein 1; RNA recog | 99.47 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 99.47 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.46 | |
| 2dh8_A | 105 | DAZ-associated protein 1; RRM domain, structural g | 99.46 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.46 | |
| 2cpy_A | 114 | RNA-binding protein 12; RRM domain, structural gen | 99.46 | |
| 2dis_A | 109 | Unnamed protein product; structural genomics, RRM | 99.46 | |
| 2cqg_A | 103 | TDP-43, TAR DNA-binding protein-43; RNA recognitio | 99.46 | |
| 2pe8_A | 105 | Splicing factor 45; RRM, protein binding; 2.00A {H | 99.46 | |
| 2cqi_A | 103 | Nucleolysin TIAR; RNA recognition motif, RRM, RNA | 99.46 | |
| 1x4b_A | 116 | Heterogeneous nuclear ribonucleoproteins A2/B1; st | 99.46 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.45 | |
| 2lea_A | 135 | Serine/arginine-rich splicing factor 2; SR protein | 99.45 | |
| 2dgw_A | 91 | Probable RNA-binding protein 19; RRM domain, struc | 99.45 | |
| 2db1_A | 118 | Heterogeneous nuclear ribonucleoprotein F; RRM dom | 99.45 | |
| 2jwn_A | 124 | Embryonic polyadenylate-binding protein 2-B; epabp | 99.45 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 99.45 | |
| 2err_A | 109 | Ataxin-2-binding protein 1; protein-RNA complex, R | 99.45 | |
| 2dnn_A | 109 | RNA-binding protein 12; RRM domain, RBD, structura | 99.45 | |
| 1rk8_A | 165 | CG8781-PA, CG8781-PA protein; mRNA processing, RRM | 99.45 | |
| 1x5o_A | 114 | RNA binding motif, single-stranded interacting pro | 99.44 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.44 | |
| 2cq3_A | 103 | RNA-binding protein 9; RRM domain, structural geno | 99.44 | |
| 1wg5_A | 104 | Heterogeneous nuclear ribonucleoprotein H; structu | 99.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.44 | |
| 3q2s_C | 229 | Cleavage and polyadenylation specificity factor S; | 99.43 | |
| 2lmi_A | 107 | GRSF-1, G-rich sequence factor 1; G-rich RNA seque | 99.43 | |
| 2dha_A | 123 | FLJ20171 protein; RRM domain, structural genomics, | 99.43 | |
| 2ad9_A | 119 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.43 | |
| 1x4d_A | 102 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.42 | |
| 2cq1_A | 101 | PTB-like protein L; RRM domain, structural genomic | 99.42 | |
| 1wel_A | 124 | RNA-binding protein 12; structural genomics, NPPSF | 99.42 | |
| 2jvr_A | 111 | Nucleolar protein 3; RNA recognition motif, nucleu | 99.42 | |
| 3v4m_A | 105 | Splicing factor U2AF 65 kDa subunit; canonical RNA | 99.42 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.41 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.41 | |
| 1x4a_A | 109 | Splicing factor, arginine/serine-rich 1 (splicing | 99.41 | |
| 2xs2_A | 102 | Deleted in azoospermia-like; RNA binding protein-R | 99.41 | |
| 1x4f_A | 112 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.4 | |
| 2diu_A | 96 | KIAA0430 protein; structural genomics, RRM domain, | 99.4 | |
| 2f3j_A | 177 | RNA and export factor binding protein 2; RRM domai | 99.4 | |
| 3lqv_A | 115 | PRE-mRNA branch site protein P14; cysless mutant, | 99.4 | |
| 1wex_A | 104 | Hypothetical protein (riken cDNA 2810036L13); stru | 99.4 | |
| 2cq2_A | 114 | Hypothetical protein LOC91801; RRM domain, structu | 99.39 | |
| 2fc9_A | 101 | NCL protein; structure genomics, RRM_1 domain, str | 99.39 | |
| 2fc8_A | 102 | NCL protein; structure genomics, RRM_1 domain, str | 99.39 | |
| 2cpx_A | 115 | Hypothetical protein FLJ11016; RRM domain, structu | 99.39 | |
| 1whx_A | 111 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.39 | |
| 2hgm_A | 126 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.38 | |
| 1x4c_A | 108 | Splicing factor, arginine/serine-rich 1; structura | 99.38 | |
| 2hgn_A | 139 | Heterogeneous nuclear ribonucleoprotein F; RNA rec | 99.38 | |
| 1fj7_A | 101 | Nucleolin RBD1, protein C23; RNP, RRM, RNA binding | 99.37 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.37 | |
| 2hvz_A | 101 | Splicing factor, arginine/serine-rich 7; RRM, RNA | 99.37 | |
| 1x4g_A | 109 | Nucleolysin TIAR; structural genomics, RRM domain, | 99.36 | |
| 1nu4_A | 97 | U1A RNA binding domain; RNA recognition motif, U1 | 99.36 | |
| 1why_A | 97 | Hypothetical protein riken cDNA 1810017N16; RNA re | 99.35 | |
| 2dnq_A | 90 | RNA-binding protein 4B; RRM domain,RBD, structural | 99.35 | |
| 3ue2_A | 118 | Poly(U)-binding-splicing factor PUF60; RNA recogni | 99.35 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.35 | |
| 2lcw_A | 116 | RNA-binding protein FUS; RRM, nucleic acid binding | 99.03 | |
| 2xnq_A | 97 | Nuclear polyadenylated RNA-binding protein 3; tran | 99.34 | |
| 1fjc_A | 96 | Nucleolin RBD2, protein C23; RNP, RRM, RNA binding | 99.34 | |
| 2cpj_A | 99 | Non-POU domain-containing octamer-binding protein; | 99.34 | |
| 2e5j_A | 97 | Methenyltetrahydrofolate synthetase domain contain | 99.34 | |
| 2jvo_A | 108 | Nucleolar protein 3; nucleus, phosphorylation, rib | 99.34 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.34 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.34 | |
| 2la4_A | 101 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.33 | |
| 2dit_A | 112 | HIV TAT specific factor 1 variant; structural geno | 99.33 | |
| 1sjr_A | 164 | Polypyrimidine tract-binding protein 1; extended b | 99.33 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.32 | |
| 2ytc_A | 85 | PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s | 99.32 | |
| 3pgw_S | 437 | U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM | 99.32 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.31 | |
| 2dnl_A | 114 | Cytoplasmic polyadenylation element binding protei | 99.31 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.3 | |
| 2dnp_A | 90 | RNA-binding protein 14; RRM domain, RBD, structura | 99.3 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.3 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 99.3 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.3 | |
| 3zzy_A | 130 | Polypyrimidine tract-binding protein 1; protein bi | 99.3 | |
| 3egn_A | 143 | RNA-binding protein 40; RNA recognition motif (RRM | 99.3 | |
| 1wg1_A | 88 | KIAA1579 protein, homolog EXC-7; RBD, structural g | 99.3 | |
| 2dgu_A | 103 | Heterogeneous nuclear ribonucleoprotein Q; RRM dom | 99.3 | |
| 2kvi_A | 96 | Nuclear polyadenylated RNA-binding protein 3; RNA- | 99.29 | |
| 3beg_B | 115 | Splicing factor, arginine/serine-rich 1; kinase, S | 99.29 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.29 | |
| 2cpd_A | 99 | Apobec-1 stimulating protein; RNA recognition moti | 99.29 | |
| 3d2w_A | 89 | TAR DNA-binding protein 43; DP-43 proteinopathy, T | 99.28 | |
| 2hzc_A | 87 | Splicing factor U2AF 65 kDa subunit; RNA splicing, | 99.28 | |
| 2voo_A | 193 | Lupus LA protein; RNA-binding protein, RNA recogni | 99.28 | |
| 2e5i_A | 124 | Heterogeneous nuclear ribonucleoprotein L-like; RR | 99.28 | |
| 2dgt_A | 92 | RNA-binding protein 30; RRM domain, structural gen | 99.28 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.28 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.27 | |
| 2e5g_A | 94 | U6 snRNA-specific terminal uridylyltransferase 1; | 99.27 | |
| 1wf1_A | 110 | RNA-binding protein RALY; structural genomics, RRM | 99.27 | |
| 2e44_A | 96 | Insulin-like growth factor 2 mRNA binding protein | 99.27 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.27 | |
| 1jmt_A | 104 | Splicing factor U2AF 35 kDa subunit; RRM, RNA spli | 99.27 | |
| 1x5p_A | 97 | Negative elongation factor E; structure genomics, | 99.26 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.26 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.26 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.26 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.25 | |
| 2cqh_A | 93 | IGF-II mRNA-binding protein 2 isoform A; RNA recog | 99.25 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.25 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.25 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.24 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.24 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.24 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.23 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.23 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.22 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.21 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.2 | |
| 2bz2_A | 121 | Negative elongation factor E; NELF E, RNA recognit | 99.2 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.19 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.18 | |
| 3s6e_A | 114 | RNA-binding protein 39; ferredoxin-like, structura | 99.18 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.17 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.17 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.17 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.16 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.16 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.15 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.15 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.15 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 99.13 | |
| 1wf0_A | 88 | TDP-43, TAR DNA-binding protein-43; structural gen | 99.12 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.1 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.09 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.07 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.07 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.07 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.07 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.07 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.06 | |
| 3tht_A | 345 | Alkylated DNA repair protein ALKB homolog 8; struc | 99.05 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.05 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.05 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.05 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.02 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.01 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.99 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 98.99 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.98 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 98.97 | |
| 2d9o_A | 100 | DNAJ (HSP40) homolog, subfamily C, member 17; RRM | 98.96 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 98.95 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 98.94 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.92 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.91 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 98.91 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.91 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 98.91 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.87 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 98.85 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 98.83 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 98.82 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.81 | |
| 2dnr_A | 91 | Synaptojanin-1; RRM domain, RBD, structural genomi | 98.78 | |
| 1owx_A | 121 | Lupus LA protein, SS-B, LA; RRM, transcription; NM | 98.74 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.73 | |
| 1ufw_A | 95 | Synaptojanin 2; RNP domain, structural genomics, r | 98.69 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.68 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.67 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.67 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.66 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.63 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 98.63 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.6 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.6 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.56 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.55 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.54 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.5 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.49 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.49 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.46 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.44 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.42 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.28 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.25 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.24 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.22 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.16 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.16 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.09 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.07 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.07 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.04 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.03 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.02 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.01 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.99 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.98 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.96 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.96 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.88 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.88 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.88 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.85 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.85 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.82 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.8 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.79 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.79 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.76 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.75 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.75 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.73 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.7 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.69 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.63 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.6 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.59 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.58 | |
| 2l9w_A | 117 | U4/U6 snRNA-associated-splicing factor PRP24; RRM, | 97.57 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.54 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.4 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.39 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.37 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.34 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.33 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.3 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.28 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=387.77 Aligned_cols=401 Identities=13% Similarity=0.174 Sum_probs=306.1
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--e
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--R 247 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~ 247 (712)
......++|+|+ .++... ++.+.+|+. ........+.+|...|++++|||+|++||+++.++ |+|||.. +.. .
T Consensus 20 ~~~~~~~spdg~-~l~~~~-~~~v~l~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~-~~~~~~ 95 (611)
T 1nr0_A 20 TAVVLGNTPAGD-KIQYCN-GTSVYTVPV-GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT-QTTHIL 95 (611)
T ss_dssp CCCCCEECTTSS-EEEEEE-TTEEEEEET-TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS-STTCCE
T ss_pred ceeEEeeCCCCC-EEEeCC-CCEEEEecC-CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECC-CCccee
Confidence 334455678877 334444 568889998 45667778999999999999999999999999999 8899986 332 2
Q ss_pred eeee-cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRY-AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~-~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
...+ .| ..|.+++|||+|++|++++.+. ...+.|++|| ++..+..+.+|...+. +++
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~------~~~~~v~~wd--~~~~~~~l~gh~~~v~-------------~v~ 154 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGR------ERFGHVFLFD--TGTSNGNLTGQARAMN-------------SVD 154 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCS------SCSEEEEETT--TCCBCBCCCCCSSCEE-------------EEE
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCC------CceeEEEEee--CCCCcceecCCCCCce-------------EEE
Confidence 2233 24 4599999999999999988651 1125788888 5777888888887764 799
Q ss_pred ecCCCCC-EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 326 WGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 326 ~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|+| ++. .|++++ |++|++|+..+++.+.....|...|.+++|+|+|++|++ ++.|+.+++|. ..+.+.+.
T Consensus 155 f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las-----~s~D~~i~lwd--~~~g~~~~ 226 (611)
T 1nr0_A 155 FKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS-----TGGDGTIVLYN--GVDGTKTG 226 (611)
T ss_dssp ECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCCEEE
T ss_pred ECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE-----EECCCcEEEEE--CCCCcEee
Confidence 999 987 588888 999999999988877767778888999999999999999 77888777654 44443333
Q ss_pred eee-------eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC-------------------------
Q 005140 404 QKN-------LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD------------------------- 451 (712)
Q Consensus 404 ~~~-------~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~------------------------- 451 (712)
... .+......+.|+|+|++|++++.+++ +++|++....
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~---------v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT---------IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE---------EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCe---------EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 221 34556677899999999999999987 4444432210
Q ss_pred ---------------cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC--------ceeE--
Q 005140 452 ---------------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG--------RVSK-- 506 (712)
Q Consensus 452 ---------------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~--------~~~~-- 506 (712)
.......+.+|...|.+++|+|+|++|++++.|+ .|++||+.++.... .+..
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~---~v~~Wd~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG---HINSWDISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeecccCCcceEEEEE
Confidence 0011234568999999999999999999999999 99999986532100 0000
Q ss_pred -------------------------------------------------------------------EEEe-CCCceeEE
Q 005140 507 -------------------------------------------------------------------LTTL-KGKQANAL 518 (712)
Q Consensus 507 -------------------------------------------------------------------~~~~-~~~~v~~l 518 (712)
+..+ ....+.++
T Consensus 375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v 454 (611)
T 1nr0_A 375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454 (611)
T ss_dssp ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence 0000 01246789
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCccee--ee-eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC--ce
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--KL 593 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~--~~-~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~~ 593 (712)
+|||||++|++++. |+.|++||+.++.. +. ..|...|++++|||||++|++++. |+.+++|++.. .+
T Consensus 455 a~spdg~~lasgs~---D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-----d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 455 ALSNDKQFVAVGGQ---DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-----SRKVIPYSVANNFEL 526 (611)
T ss_dssp EECTTSCEEEEEET---TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSCEEEEEGGGTTEE
T ss_pred EEeCCCCEEEEeCC---CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-----CCCEEEEEcCCCCce
Confidence 99999999999998 99999999986543 12 467789999999999999999999 99999999874 33
Q ss_pred eee----ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 594 LYR----TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 594 ~~~----~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+.. .|...|++++|+|++++|++++.|+.|+
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence 322 2778999999999999999999998876
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=378.33 Aligned_cols=405 Identities=15% Similarity=0.189 Sum_probs=302.6
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCC-CCCCcccccCCCcccceEEEcCCCcEEEEEecC----c-eEEeeccc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDAR-HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----G-AAVWGGAN 243 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~-i~iw~~~~ 243 (712)
..+....++|+|+ .++..+.++++.+|+... .......+.+|...|.+++|||+|++||+++.+ + +.+|+..
T Consensus 60 ~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~- 137 (611)
T 1nr0_A 60 HQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG- 137 (611)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-
T ss_pred CceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-
Confidence 3456667788875 566777899999999832 222344678899999999999999999998865 2 6678754
Q ss_pred CcceeeeecCCCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 244 TFNRLMRYAHPQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 244 ~~~~~~~~~~~~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
........|...|.+++|+|++. +|++++.| ++|++||..+++.+..+.+|...+.
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D----------~~v~lwd~~~~~~~~~l~~H~~~V~------------- 194 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDD----------NTVAIFEGPPFKFKSTFGEHTKFVH------------- 194 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETT----------SCEEEEETTTBEEEEEECCCSSCEE-------------
T ss_pred CCcceecCCCCCceEEEECCCCCeEEEEEeCC----------CeEEEEECCCCeEeeeeccccCceE-------------
Confidence 32222233344599999999997 59999999 9999999999999999999988763
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc-------ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS-------LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
+++|+| +|++|++++ |++|++|++.+++.+.... .|...|.+++|+|++++|++ ++.|+.+++|.
T Consensus 195 ~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s-----~s~D~~v~lWd- 267 (611)
T 1nr0_A 195 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS-----ASADKTIKIWN- 267 (611)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE-----EETTSEEEEEE-
T ss_pred EEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE-----EeCCCeEEEEe-
Confidence 799999 999999999 9999999998877654432 47778999999999999998 77787776654
Q ss_pred ecCCcccee-------------------------------------------eeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 395 QIPSKEELR-------------------------------------------QKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 395 ~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
+.+.+.+. ....+......+.|+|+|++|++++.++
T Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 268 -VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp -TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 33322111 1112334456788999999999999887
Q ss_pred cccccccc---------------------------------ccEEEEEEecCCc-------------ce-----------
Q 005140 432 TKTKKSTY---------------------------------TGFELFRIKERDI-------------PI----------- 454 (712)
Q Consensus 432 ~~~~~~~~---------------------------------~~~~l~~l~~~~~-------------~~----------- 454 (712)
....|... ..+++|++..... +.
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 63322211 0122222111000 00
Q ss_pred --------------eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eCCCceeEEE
Q 005140 455 --------------EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANALF 519 (712)
Q Consensus 455 --------------~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~l~ 519 (712)
....+ .|...+.+++|+|+|++||+++.|+ .|++|++.++.. ..+.. .+...|++++
T Consensus 427 ~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~---~v~lwd~~~~~~----~~~~~~~h~~~v~~v~ 498 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDS---KVHVYKLSGASV----SEVKTIVHPAEITSVA 498 (611)
T ss_dssp EEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTS---EEEEEEEETTEE----EEEEEEECSSCEEEEE
T ss_pred EEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCC---eEEEEEccCCce----eeeeccCCCCceEEEE
Confidence 00111 2456788999999999999999999 999999975431 12222 2345799999
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCc-ceeeee----ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-c-
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMAT----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-K- 592 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~-~~~~~~----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~- 592 (712)
|||+|++|++++. |+.|++|++.+ ++++.. .|...|++++|||||++||+++. |+.|+||++.. .
T Consensus 499 fspdg~~las~s~---d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-----D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 499 FSNNGAFLVATDQ---SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-----DNSVIVWNMNKPSD 570 (611)
T ss_dssp ECTTSSEEEEEET---TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTCTTS
T ss_pred ECCCCCEEEEEcC---CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC-----CCcEEEEECCCccc
Confidence 9999999999998 99999999987 655443 37789999999999999999999 99999999974 2
Q ss_pred ee-e--eec-ccceeeeEEecCCCCCCChhhHHHHH
Q 005140 593 LL-Y--RTL-KDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 593 ~~-~--~~~-~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+ . ..| ...|.+++|+|++. |++++.|+.|+
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred ccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEE
Confidence 22 2 235 68899999999998 99999988765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=365.89 Aligned_cols=382 Identities=16% Similarity=0.268 Sum_probs=309.1
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR 250 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~ 250 (712)
+......|+++ .++..+.++.+.+|+. .......+.+|...|.+++|+|+|++|++++.++ +++|+.. .+.+..
T Consensus 183 v~~~~~~~~~~-~l~~~~~d~~v~~w~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~ 257 (577)
T 2ymu_A 183 VWGVAFSPDGQ-TIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT 257 (577)
T ss_dssp EEEEEECTTSS-CEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEE
T ss_pred eeeeeecCCCC-EEEEEcCCCEEEEEeC--CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE
Confidence 33445556554 5667778899999986 4566677889999999999999999999999999 8899976 333433
Q ss_pred e--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 251 Y--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 251 ~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
+ +...|.+++|+|++++|++++.+ +.|++|+. +++.++.+.+|...+. +++|+|
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d----------~~i~~w~~-~~~~~~~~~~h~~~v~-------------~~~~~~ 313 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDD----------KTVKLWNR-NGQLLQTLTGHSSSVW-------------GVAFSP 313 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEET-TSCEEEEECCCSSCEE-------------EEEECT
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCC----------CEEEEEeC-CCcEEEEEecCCCCeE-------------EEEECC
Confidence 3 33459999999999999999999 89999995 7888888988877763 689999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
++++|++++ |+.|++|+.....+ .....+...+.+++|+|++++|++ ++.++.+++| +. +.+.+.....
T Consensus 314 -~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~-----~~~dg~v~~~--~~-~~~~~~~~~~ 383 (577)
T 2ymu_A 314 -DGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIAS-----ASDDKTVKLW--NR-NGQLLQTLTG 383 (577)
T ss_dssp -TSSEEEEEETTSCEEEEETTSCEE-EEECCCSSCEEEEEECTTSSEEEE-----EETTSEEEEE--ET-TCCEEEEEEC
T ss_pred -CCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCCCEEEEEECCCCCEEEE-----EeCCCEEEEE--cC-CCCEEEEecC
Confidence 999999998 99999999875543 334456678999999999999998 6666666655 43 3344444444
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
+......+.|+|+|++|++++.++. +.+|+.. +. ....+.+|...|.+++|+|++++|++++.|+
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~---------v~~~~~~--~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~-- 448 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKT---------VKLWNRN--GQ--LLQTLTGHSSSVWGVAFSPDDQTIASASDDK-- 448 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSE---------EEEECTT--CC--EEEEEECCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCE---------EEEEeCC--CC--EEEEecCCCCCeEEEEECCCCCEEEEEcCCC--
Confidence 5556667899999999999998876 7788732 22 2245668999999999999999999999999
Q ss_pred CeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW 563 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~ 563 (712)
.|++|++.. . .+..+.+ ..+.+++|+|+|++|++++. |+.|++||.. ++++.. .|...|++++|
T Consensus 449 -~v~~w~~~~-~------~~~~~~~~~~~v~~~~~spd~~~las~~~---d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~ 516 (577)
T 2ymu_A 449 -TVKLWNRNG-Q------LLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVKLWNRN-GQLLQTLTGHSSSVRGVAF 516 (577)
T ss_dssp -EEEEEETTS-C------EEEEEECCSSCEEEEEECTTSCEEEEEET---TSEEEEEETT-SCEEEEEECCSSCEEEEEE
T ss_pred -EEEEEECCC-C------EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEcCC-CCEEEEEeCCCCCEEEEEE
Confidence 999999732 1 3444443 47899999999999999998 9999999975 455443 67789999999
Q ss_pred CCCCCEEEEEEccceeccccEEEEEecCceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 564 DPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 564 spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+|+|++|++++. |+.|+||+..|+.+... |.+.|++++|+|++++|+|++.|+.|+
T Consensus 517 s~dg~~l~s~~~-----dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 517 SPDGQTIASASD-----DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp CTTSSCEEEEET-----TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cCCCCEEEEEEC-----cCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 999999999999 99999999988877654 778999999999999999999887654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=348.35 Aligned_cols=396 Identities=16% Similarity=0.270 Sum_probs=305.1
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
..+.+..++|+|+ .++..+.++++.+|+. .++....+.+|...|++++|||||++||+++.|+ |+|||.. ++.+
T Consensus 17 ~~V~~~a~spdg~-~las~~~d~~v~iWd~--~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~--~~~~ 91 (577)
T 2ymu_A 17 SSVRGVAFSPDGQ-TIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLL 91 (577)
T ss_dssp SCEEEEEECTTSS-CEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEE
T ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEC--CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEE
Confidence 3455667788887 4566778899999996 5677788999999999999999999999999999 8899976 3444
Q ss_pred eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccC-------------C-
Q 005140 249 MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG-------------G- 312 (712)
Q Consensus 249 ~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~-------------~- 312 (712)
..+ .|. .|.+++|+|+|++|++++.+ +.+++|+.... ....+..+...+... .
T Consensus 92 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d----------~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 92 QTLTGHSSSVRGVAFSPDGQTIASASDD----------KTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEcCC----------Cceeecccccc-eeeeccCCCCceeeeeeecCCccceecccc
Confidence 444 244 49999999999999999999 88999986332 222222221111000 0
Q ss_pred ---------------CCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEE
Q 005140 313 ---------------TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 313 ---------------~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
.....+..+ .+.|+| ++++|++++ |+.|++|+.. ++.+.....|...|.+++|+|++.+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~ 237 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVW-GVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIA 237 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEE-EEEECT-TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred cceeccccceeeeeeccCCCccee-eeeecC-CCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEE
Confidence 000000001 578999 999999998 9999999964 555555566778899999999999999
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
+ ++.++.+++|. . ..+.+.....+......+.|+|+|..|++++.++. +.+|+... . ..
T Consensus 238 ~-----~~~d~~i~~w~--~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~---------i~~w~~~~--~--~~ 296 (577)
T 2ymu_A 238 S-----ASDDKTVKLWN--R-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT---------VKLWNRNG--Q--LL 296 (577)
T ss_dssp E-----EETTSCEEEEC--T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEETTS--C--EE
T ss_pred E-----EeCCCEEEEEe--C-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCE---------EEEEeCCC--c--EE
Confidence 8 66777777664 3 23334444445556667889999999999998877 78887432 2 22
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccC
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~ 534 (712)
..+.+|...|.+++|+|++++|++++.|+ .|++|++... .+..+.. ..+.+++|+|+|++|++++.
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~---~i~~w~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-- 364 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDK---TVKLWNRNGQ-------HLQTLTGHSSSVWGVAFSPDGQTIASASD-- 364 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSC-------EEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCC-------eeEEEeCCCCCEEEEEECCCCCEEEEEeC--
Confidence 45678999999999999999999999999 9999997532 3334443 47899999999999999998
Q ss_pred CCceEEEEECCcceeee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee--cccceeeeEEecC
Q 005140 535 FNGQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
+|.|++|+.. ++.+. ..|...|++++|+|+|++|++++. |+.+++|+.+++.+... |...+++++|+|+
T Consensus 365 -dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 365 -DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 437 (577)
T ss_dssp -TSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECTTCCEEEEEECCSSCEEEEEECTT
T ss_pred -CCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCEEEEecCCCCCeEEEEECCC
Confidence 9999999976 44443 357789999999999999999999 99999999888776544 6688999999999
Q ss_pred CCCCCChhhHHHHH
Q 005140 611 PPSFLTPEKEEEIA 624 (712)
Q Consensus 611 ~~~l~s~~~d~~i~ 624 (712)
++.|++++.|+.|+
T Consensus 438 ~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 438 DQTIASASDDKTVK 451 (577)
T ss_dssp SSEEEEEETTSEEE
T ss_pred CCEEEEEcCCCEEE
Confidence 99999999887664
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=318.96 Aligned_cols=281 Identities=18% Similarity=0.280 Sum_probs=234.6
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
...+.+|...|++++|+|+|.+||+++.|+ |+|||.. ++.....+. |. .|.+++|+|+|++|++|+.|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-------- 171 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-------- 171 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC--------
Confidence 456789999999999999999999999999 8899998 666665553 44 59999999999999999999
Q ss_pred CccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc
Q 005140 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 361 (712)
Q Consensus 283 ~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~ 361 (712)
++|+|||+.+++.++.+.+|...+. +++|+| ++++|++++ |++|++||+.++..+.....|..
T Consensus 172 --~~i~iwd~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~ 235 (410)
T 1vyh_C 172 --MTIKLWDFQGFECIRTMHGHDHNVS-------------SVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235 (410)
T ss_dssp --SCCCEEETTSSCEEECCCCCSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred --CeEEEEeCCCCceeEEEcCCCCCEE-------------EEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence 9999999999999999999987764 799999 999999999 99999999999887776667777
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.|.++.|+|++.+|++ ++.|+.+++|. +.+.....
T Consensus 236 ~v~~~~~~~~g~~l~s-----~s~D~~v~vwd--~~~~~~~~-------------------------------------- 270 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIAS-----CSNDQTVRVWV--VATKECKA-------------------------------------- 270 (410)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCCEEE--------------------------------------
T ss_pred cEEEEEECCCCCEEEE-----EcCCCeEEEEE--CCCCceee--------------------------------------
Confidence 8999999999999988 66777766553 32222111
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeC--------------------CCEEEEEEcCCCCCeEEEEEeeccccc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--------------------GHRFAVIHGDSPRPDISFYSMRTAQHA 501 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--------------------g~~l~~~~~d~~~~~v~i~d~~~~~~~ 501 (712)
.+.+|...|.+++|+|+ |.+|++++.|+ .|++||+.++.
T Consensus 271 ----------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~---~i~iwd~~~~~-- 329 (410)
T 1vyh_C 271 ----------------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK---TIKMWDVSTGM-- 329 (410)
T ss_dssp ----------------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS---EEEEEETTTTE--
T ss_pred ----------------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC---eEEEEECCCCc--
Confidence 22344555566666554 77899999999 99999997654
Q ss_pred CceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccc
Q 005140 502 GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV 577 (712)
Q Consensus 502 ~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~ 577 (712)
.+..+.+| .|++++|+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|++.+|++++.
T Consensus 330 ----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~-- 400 (410)
T 1vyh_C 330 ----CLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-- 400 (410)
T ss_dssp ----EEEEEECCSSCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET--
T ss_pred ----eEEEEECCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 45555544 6899999999999999998 99999999998877664 67789999999999999999999
Q ss_pred eeccccEEEEEe
Q 005140 578 HEMENGFNIWSF 589 (712)
Q Consensus 578 ~~~d~~v~iw~~ 589 (712)
|+.|+||++
T Consensus 401 ---D~~i~vW~~ 409 (410)
T 1vyh_C 401 ---DQTVKVWEC 409 (410)
T ss_dssp ---TSEEEEEC-
T ss_pred ---CCcEEEEeC
Confidence 999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=363.98 Aligned_cols=400 Identities=13% Similarity=0.150 Sum_probs=306.3
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
.+....++|+++ .+++.+.++++.+|+. ..+.....+.+|...|++++|||+|++||+++.++ |+|||.. +++.+.
T Consensus 617 ~v~~~~~s~~~~-~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~ 693 (1249)
T 3sfz_A 617 AVYHACFSQDGQ-RIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-TGKLVH 693 (1249)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEE
T ss_pred cEEEEEECCCCC-EEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-CCceEE
Confidence 344556777665 5566778899999999 56777888899999999999999999999999999 8899999 777777
Q ss_pred eec-CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 250 RYA-HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 250 ~~~-~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.+. |. .|.+++|+| ++.++++++.+ +.|++||+.+++.+..+.+|...+. +++
T Consensus 694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d----------~~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~ 750 (1249)
T 3sfz_A 694 TYDEHSEQVNCCHFTNKSNHLLLATGSND----------FFLKLWDLNQKECRNTMFGHTNSVN-------------HCR 750 (1249)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEEETT----------SCEEEEETTSSSEEEEECCCSSCEE-------------EEE
T ss_pred EEcCCCCcEEEEEEecCCCceEEEEEeCC----------CeEEEEECCCcchhheecCCCCCEE-------------EEE
Confidence 663 44 499999999 45689999999 9999999999999999999887764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccc------------------------------------------------
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKK------------------------------------------------ 356 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~------------------------------------------------ 356 (712)
|+| ++++|++++ |+.|++|++.++......
T Consensus 751 ~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 751 FSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp ECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred Eec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 999 999999999 999999998765432111
Q ss_pred -------cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 357 -------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 357 -------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
..+...|.+++|+|++..+++ ++.++. |.+|+..+...+.....+......+.|+|+|.+|++++.
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~-----~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVI-----ALSQYC--VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEE-----ECSSSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEE-----EeCCCe--EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence 023345778888888888887 555555 445566666655555556666777889999999999888
Q ss_pred cccccccccc----------------------------------------------------------------------
Q 005140 430 RYTKTKKSTY---------------------------------------------------------------------- 439 (712)
Q Consensus 430 ~~~~~~~~~~---------------------------------------------------------------------- 439 (712)
++....|...
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 7763322210
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc------Cce---------
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA------GRV--------- 504 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~------~~~--------- 504 (712)
+.+.+|++.... ....+.+|...|.+++|+|+|++|++++.|+ .|++|++.++... ..+
T Consensus 983 g~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 983 GAIKIIELPNNR---VFSSGVGHKKAVRHIQFTADGKTLISSSEDS---VIQVWNWQTGDYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp SCCEEEETTTTS---CEEECCCCSSCCCCEEECSSSSCEEEECSSS---BEEEEETTTTEEECCBCCSSCEEEEEECSSS
T ss_pred CCEEEEEcCCCc---eeeecccCCCceEEEEECCCCCEEEEEcCCC---EEEEEECCCCceEEEecCCCcEEEEEEcCCC
Confidence 112333332211 1234557899999999999999999999998 8999997653210 000
Q ss_pred -------------------eEEEEe--CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeE
Q 005140 505 -------------------SKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDV 561 (712)
Q Consensus 505 -------------------~~~~~~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~ 561 (712)
..+..+ +...+.+++|+|+|+++++++. ||.|++||+.+++.+.. .|...|+++
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~---d~~v~iwd~~~~~~~~~l~~h~~~v~~~ 1133 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA---DKTAKIWSFDLLSPLHELKGHNGCVRCS 1133 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC---SSCCCEECSSSSSCSBCCCCCSSCEEEE
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC---CCcEEEEECCCcceeeeeccCCCcEEEE
Confidence 011112 2335788999999999999998 99999999998877654 577889999
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEec-Cceeee-----------ecccceeeeEEecCCCCCCChh
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR-----------TLKDHFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~-----------~~~~~i~~~~w~p~~~~l~s~~ 618 (712)
+|||+|++|++++. |+.|++|++. +..+.. .|.+.+.+++|+|++.+|++++
T Consensus 1134 ~~s~dg~~lat~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1134 AFSLDGILLATGDD-----NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp EECSSSSEEEEEET-----TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred EECCCCCEEEEEeC-----CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 99999999999999 9999999987 444432 2567899999999999998875
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=302.14 Aligned_cols=279 Identities=14% Similarity=0.221 Sum_probs=228.3
Q ss_pred cccCCCcccceEEEcCC----CcEEEEEecCc-eEEeecccCcceee--ee-cCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPL----GTYLATVHRQG-AAVWGGANTFNRLM--RY-AHP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spd----g~~lat~~~~~-i~iw~~~~~~~~~~--~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.+++|...|++++|+|+ +.+||+|+.|+ |+||+.. ...... .+ .|. .|.+++|+|++.++++++.|
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~-~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D---- 101 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD---- 101 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC-CCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC----
Confidence 45789999999999985 67999999999 8899987 443322 22 244 59999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
++|++||+.+++.+..+..+...+ + +++|+| ++++|++++ ++.|++|++.++.......
T Consensus 102 ------~~i~lWd~~~~~~~~~~~~~~~~~------------~-~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 102 ------AHIRLWDLENGKQIKSIDAGPVDA------------W-TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp ------SEEEEEETTTTEEEEEEECCTTCC------------C-CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred ------CcEEEEECCCCCEEEEEeCCCccE------------E-EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 999999999999999988776654 2 599999 999999999 9999999999887665554
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.+...|.+++|+|++++|++ ++.++.+++| ++.+.+
T Consensus 162 ~~~~~v~~~~~spdg~~las-----g~~dg~i~iw--d~~~~~------------------------------------- 197 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLAS-----GAIDGIINIF--DIATGK------------------------------------- 197 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEE-----EETTSCEEEE--ETTTTE-------------------------------------
T ss_pred CCCceEEEEEECCCCCEEEE-----EcCCCeEEEE--ECCCCc-------------------------------------
Confidence 55566888888888888887 5566655543 322111
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ce
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QA 515 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v 515 (712)
....+.+|..+|.+++|+|++++|++++.|+ .|++||++++. .+..+.+| .|
T Consensus 198 -----------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg---~i~iwd~~~~~------~~~~~~~h~~~v 251 (321)
T 3ow8_A 198 -----------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDG---YIKIYDVQHAN------LAGTLSGHASWV 251 (321)
T ss_dssp -----------------EEEEECCCSSCCCEEEECTTSCEEEEECTTS---CEEEEETTTCC------EEEEECCCSSCE
T ss_pred -----------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCC---eEEEEECCCcc------eeEEEcCCCCce
Confidence 1123457889999999999999999999999 99999997654 45566555 68
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+++|+|+|++|++++. |+.|++||+.+++++.+ .|...|.+++|+|+|++|++++. |+.|+||++
T Consensus 252 ~~~~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~-----d~~i~vwd~ 319 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSS---DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD-----DQEIHIYDC 319 (321)
T ss_dssp EEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TCCEEEEEC
T ss_pred EEEEECCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEeC
Confidence 99999999999999998 99999999999888775 56789999999999999999999 999999995
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=346.11 Aligned_cols=405 Identities=10% Similarity=0.053 Sum_probs=286.7
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
.+.+..++|+++ .++++..++++.+|+.. ....... ..|...|++++|+| |++||+++.|+ |+|||+. +.+.+.
T Consensus 19 ~V~~lafspdg~-~lAsgs~Dg~I~lw~~~-~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~-~~~~~~ 93 (902)
T 2oaj_A 19 KPIAAAFDFTQN-LLAIATVTGEVHIYGQQ-QVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY-SQKVLT 93 (902)
T ss_dssp CEEEEEEETTTT-EEEEEETTSEEEEECST-TCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT-TCSEEE
T ss_pred CcEEEEECCCCC-EEEEEeCCCEEEEEeCC-CcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC-CCcEEE
Confidence 455667778775 66788889999999973 3322222 34778999999999 89999999999 8899999 777777
Q ss_pred eecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee-----------eeccCCCcccccCCCCCcC
Q 005140 250 RYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM-----------RDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 250 ~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~-----------~~~~~~~~~~~~~~~~~~~ 317 (712)
.+.|. .|.+++|+|++++|++|+.+ ++|++||+.+++.. ..+.+|...+.
T Consensus 94 ~~~~~~~V~~v~~sp~g~~l~sgs~d----------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~-------- 155 (902)
T 2oaj_A 94 TVFVPGKITSIDTDASLDWMLIGLQN----------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV-------- 155 (902)
T ss_dssp EEECSSCEEEEECCTTCSEEEEEETT----------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC--------
T ss_pred EEcCCCCEEEEEECCCCCEEEEEcCC----------CcEEEEECCCCccccceeccccccccccccCCCCeE--------
Confidence 77655 49999999999999999999 99999999888753 22344544442
Q ss_pred CCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceeccccccc------------------ccCeeeEEECCCCCeEEE
Q 005140 318 GVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLK------------------VENVMDFSWSPTDPIISL 377 (712)
Q Consensus 318 ~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~sp~~~~la~ 377 (712)
+++|+| ++ .+|++++ |+.| +||+.+++.+.....+ ...|.+++|+|+|.+|++
T Consensus 156 -----sl~~sp-~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 156 -----SIQWNP-RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp -----EEEEET-TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred -----EEEEcc-CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 799999 75 5777777 9999 9999988766444333 356999999999999999
Q ss_pred EeecCCCCCCCeEEEEEecCCccceeeeee------------------eeecceeEEEC----cCC-CEEEEEEcccc--
Q 005140 378 FVPELGGGNQPARVSLVQIPSKEELRQKNL------------------FSVSDCKMYWQ----SSG-DYLAVKVDRYT-- 432 (712)
Q Consensus 378 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------~~~~~~~~~~s----~~g-~~l~~~~~~~~-- 432 (712)
++.|+.+++| ++.+.+.+....+ +......+.|+ |++ ..|++++.+..
T Consensus 229 -----gs~Dg~i~lW--d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 229 -----IHEDNSLVFW--DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp -----EETTCCEEEE--ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred -----EECCCeEEEE--ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 7777776655 5554444332111 12235567884 444 34555533310
Q ss_pred ---ccccc----------------------------------------------c----------------cccEEEEEE
Q 005140 433 ---KTKKS----------------------------------------------T----------------YTGFELFRI 447 (712)
Q Consensus 433 ---~~~~~----------------------------------------------~----------------~~~~~l~~l 447 (712)
...+. . .+.+.+|++
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 00000 0 023555554
Q ss_pred ecCCc----------------ceeEE----------------------EecCCCCceEEEEEeeCCCEEEEEEcCCCCCe
Q 005140 448 KERDI----------------PIEVL----------------------ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 489 (712)
Q Consensus 448 ~~~~~----------------~~~~~----------------------~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 489 (712)
..... .+..+ .+.+|...+.+++|+|++++|++++.|+ +
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg---t 458 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG---S 458 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS---E
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC---c
Confidence 21100 00000 1234445555667789999999999999 9
Q ss_pred EEEEEeecccccCceeEEEE-------eCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce--------------
Q 005140 490 ISFYSMRTAQHAGRVSKLTT-------LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE-------------- 548 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~-------~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~-------------- 548 (712)
|++||+.++........... -+...|.+++|||||++||+|+. ||+|+||++.+++
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~---DgtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE---TGDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET---TSCEEEEEEEECCC-------------
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec---CcEEEEEEecCccccCccccCCCcccc
Confidence 99999977632110001111 12337999999999999999998 9999999998652
Q ss_pred -------------------------------eee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 549 -------------------------------TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 549 -------------------------------~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
++. ..|...|++++||||| +||+|+. |+.|+|||+.+..+.
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~-----D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA-----AGSLMLIDRRGPAII 609 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET-----TSEEEEEETTTTEEE
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC-----CCcEEEEECCCCeEE
Confidence 122 2577899999999999 9999999 999999999875432
Q ss_pred e---------ecccceeeeEEe-----cCC---CCCCChhhHHHHH
Q 005140 596 R---------TLKDHFFQFLWR-----PRP---PSFLTPEKEEEIA 624 (712)
Q Consensus 596 ~---------~~~~~i~~~~w~-----p~~---~~l~s~~~d~~i~ 624 (712)
. .|.+.|++++|+ ||| ++|++++.|++|+
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 1 355679999999 885 7999999998886
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=304.14 Aligned_cols=280 Identities=16% Similarity=0.261 Sum_probs=230.4
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
...+.+|...|++++|||+|++||+++.|+ |+|||.. +...+..+. |. .|.+++|+|+|++|++++.+
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-------- 118 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-------- 118 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEECSSSCEEEEEECTTSSEEEEEETT--------
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCCcceEeecCCccEEEEEECCCCCEEEEEeCC--------
Confidence 456789999999999999999999999999 8899998 677666653 33 49999999999999999999
Q ss_pred CccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc
Q 005140 283 NRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 283 ~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~ 358 (712)
+.|++|++.++. ..+.+.+|...+. ++.|++ ++.+++++.|+.|++||+.++..+.....
T Consensus 119 --~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 119 --NICSIYNLKTREGNVRVSRELAGHTGYLS-------------CCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp --CEEEEEETTTCSBSCEEEEEEECCSSCEE-------------EEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred --CeEEEEECccCCCcceeEEEecCCCccEE-------------EEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcC
Confidence 999999997653 4566777776653 688999 88754444499999999999888777767
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
|...|.+++|+|++.+|++ ++.++.+++|. +.+..
T Consensus 183 h~~~v~~~~~~~~~~~l~s-----g~~d~~v~~wd--~~~~~-------------------------------------- 217 (340)
T 1got_B 183 HTGDVMSLSLAPDTRLFVS-----GACDASAKLWD--VREGM-------------------------------------- 217 (340)
T ss_dssp CSSCEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCS--------------------------------------
T ss_pred CCCceEEEEECCCCCEEEE-----EeCCCcEEEEE--CCCCe--------------------------------------
Confidence 8888999999999998888 66777666553 21110
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC----Cc
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----KQ 514 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~ 514 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++||++++. .+..+.. ..
T Consensus 218 ----------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~---~v~iwd~~~~~------~~~~~~~~~~~~~ 272 (340)
T 1got_B 218 ----------------CRQTFTGHESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQ------ELMTYSHDNIICG 272 (340)
T ss_dssp ----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE------EEEEECCTTCCSC
T ss_pred ----------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCc------EEEEEccCCcccc
Confidence 0123457889999999999999999999999 99999997644 3333332 25
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+.+++|+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.|+||+
T Consensus 273 v~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-----D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYD---DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-----DSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSCEEEEC
T ss_pred eEEEEECCCCCEEEEECC---CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC-----CccEEecC
Confidence 899999999999999998 99999999988776654 67789999999999999999999 99999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=325.71 Aligned_cols=415 Identities=13% Similarity=0.167 Sum_probs=286.8
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCC----CCcccccCCCcc-cceEEEcC--CCcEEEEEecCc-eEEeec
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHL----KPEPVYKRSYWT-ESFVQWSP--LGTYLATVHRQG-AAVWGG 241 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~-v~~v~~Sp--dg~~lat~~~~~-i~iw~~ 241 (712)
..+....++|+++ .+++.. ++.+.+|+.. .+ .....+.+|... |++++||| +|++||+++.++ |+||+.
T Consensus 19 ~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 19 NFTTHLSYDPTTN-AIAYPC-GKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TCCCCCEEETTTT-EEEEEE-TTEEEEEECC-SSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred CceeEEEECCCCC-EEEEec-CCeEEEEECC-CCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 4456667778776 333333 7788899984 55 677788999999 99999999 999999999999 889999
Q ss_pred ccCc--------ceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCC----------------------------CCc---
Q 005140 242 ANTF--------NRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPS----------------------------NPR--- 280 (712)
Q Consensus 242 ~~~~--------~~~~~~~-~-~~v~~i~~Spdg~~l~t~s~d~~~----------------------------~~~--- 280 (712)
. +. ..+..+. | ..|.+++|+|+|++|++++.+... .+.
T Consensus 96 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 96 T-FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 174 (615)
T ss_dssp E-EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred C-CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc
Confidence 6 33 3333332 3 348888888888877777654100 000
Q ss_pred ----CCCccEEEEEEccCCceeeeccCCCc---ccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCce
Q 005140 281 ----DANRVVINIFDVRTGKVMRDFKGSAD---EFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 281 ----~~~~~~I~iwd~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~ 351 (712)
...++.|++||+.+++.+..+.+|.. .+. +++|+| + +++|++++ ++.|++|++.+++
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR-------------DVEFSP-DSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE-------------EEEECS-TTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE-------------EEEECC-CCCCEEEEEeCCCeEEEEECCCCC
Confidence 11237899999999999999988876 543 799999 9 99999988 9999999999888
Q ss_pred ecccc-c---ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee----eecceeEEECcCCCE
Q 005140 352 LIDKK-S---LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDY 423 (712)
Q Consensus 352 ~~~~~-~---~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~ 423 (712)
.+... . .|...|.+++|+ ++.+|++ ++.++. |.+|++.+.+.+...... ......+.|+ ++.+
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-----~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFAT-----VGADAT--IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR 311 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEE-----EETTSE--EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEE-----EcCCCc--EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence 77665 4 677789999999 9999998 555554 556666666555444332 2334455664 8889
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEe---------------------cCCCCceEEEEEeeCCCEEEEEE
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL---------------------DNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---------------------~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
+++++.++....+.......+..+.....++..+.+ .+|...|.+++| +++..|++++
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~ 390 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS 390 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe
Confidence 999888776222221111111111111111110000 234445555555 3345555555
Q ss_pred cCCCCCeEEEEEeecccc------------------------------------------------------------cC
Q 005140 483 GDSPRPDISFYSMRTAQH------------------------------------------------------------AG 502 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~------------------------------------------------------------~~ 502 (712)
.++ .|++|++.++.. ..
T Consensus 391 ~d~---~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 391 WDD---TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp TTT---EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred CCC---CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 554 455554432110 00
Q ss_pred ce--------eEE-EEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--c-cccceeeEEECC---
Q 005140 503 RV--------SKL-TTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--A-EHFMATDVEWDP--- 565 (712)
Q Consensus 503 ~~--------~~~-~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~-~~~~v~~~~~sp--- 565 (712)
.+ ... ..+.. ..+.+++|+|+|++|++++. ||.|++||+.+++.+.. . |...|++++|+|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV---MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC---CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence 00 011 33333 36899999999999999998 99999999999888775 3 778999999999
Q ss_pred -------CCCEEEEEEccceeccccEEEEEecC--ceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 566 -------TGRYVATAVTSVHEMENGFNIWSFNG--KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 566 -------dg~~l~t~s~~~~~~d~~v~iw~~~g--~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+|++|++++. |+.|+||++.. ..+... |...|++++|+|++. |++++.|+.|+
T Consensus 545 ~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSL-----DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp -----CCSCCEEEEEET-----TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred cccccccCCCEEEEEcC-----CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence 9999999999 99999999974 344433 678999999999999 99999887654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=313.11 Aligned_cols=332 Identities=15% Similarity=0.176 Sum_probs=258.6
Q ss_pred EEecCCCCCCCcccccCCCcccceEEEcCCCc-EEEEEecCc-eEEeec----ccCcc------eeeeec----------
Q 005140 195 VLWNDARHLKPEPVYKRSYWTESFVQWSPLGT-YLATVHRQG-AAVWGG----ANTFN------RLMRYA---------- 252 (712)
Q Consensus 195 ~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~----~~~~~------~~~~~~---------- 252 (712)
.+|+. ...........|...|++++|||+|+ +||+++.++ |+||++ . ++. ....+.
T Consensus 28 ~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 28 SSDDL-DGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC----
T ss_pred ccccc-hhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccC-Ccccccccccccccccccccccccc
Confidence 36666 23333333455668999999999999 999999999 889999 7 555 333332
Q ss_pred -CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 -HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 -~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
|. .|.+++|+|+|++|++++.+ +.|++|| .+++.+..+..|...+. +++|+| +
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~i~~-~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 160 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVEN----------GELRLWN-KTGALLNVLNFHRAPIV-------------SVKWNK-D 160 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETT----------SCEEEEE-TTSCEEEEECCCCSCEE-------------EEEECT-T
T ss_pred CCCCceEEEEEcCCCCEEEEEeCC----------CeEEEEe-CCCCeeeeccCCCccEE-------------EEEECC-C
Confidence 34 59999999999999999999 9999999 68889999988877663 799999 9
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccC---------------eeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVEN---------------VMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
+++|++++ ++.|++|++.+++.+.....+... +.+++|+|++. +++ ++.++ .|.+|
T Consensus 161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~g--~i~~~ 232 (425)
T 1r5m_A 161 GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVI-----PGPKG--AIFVY 232 (425)
T ss_dssp SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEE-----ECGGG--CEEEE
T ss_pred CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEE-----EcCCC--eEEEE
Confidence 99999998 999999999988877655555544 89999999866 444 34444 46667
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
++...+.+.....+......+.|+|++++|++++.++. +.+|++..... ...+.+|...|.+++|+|+
T Consensus 233 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT---------LRIWHGGNGNS---QNCFYGHSQSIVSASWVGD 300 (425)
T ss_dssp ETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC---------EEEECSSSBSC---SEEECCCSSCEEEEEEETT
T ss_pred EcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE---------EEEEECCCCcc---ceEecCCCccEEEEEECCC
Confidence 77776665555555666778899999999999998876 78888765332 2445678999999999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce----
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE---- 548 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~---- 548 (712)
+ +|++++.++ .|++||+.++. .+..+. ...+.+++|+|+|++|++++. +|.|++||+.+++
T Consensus 301 ~-~l~~~~~d~---~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 301 D-KVISCSMDG---SVRLWSLKQNT------LLALSIVDGVPIFAGRISQDGQKYAVAFM---DGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp T-EEEEEETTS---EEEEEETTTTE------EEEEEECTTCCEEEEEECTTSSEEEEEET---TSCEEEEECHHHHC---
T ss_pred C-EEEEEeCCC---cEEEEECCCCc------EeEecccCCccEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcccee
Confidence 9 999999999 99999997654 344443 457999999999999999998 9999999999776
Q ss_pred ----------------eeee--cccc--ceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 549 ----------------TMAT--AEHF--MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 549 ----------------~~~~--~~~~--~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
.+.. .|.. .|++++|+|+|++|++++. |+.++||++.|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~g 425 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS-----LQEGSVVAIPG 425 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES-----SSCCEEEECCC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec-----CceEEEEeecC
Confidence 5554 3433 8999999999999999999 99999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=361.18 Aligned_cols=411 Identities=14% Similarity=0.167 Sum_probs=307.1
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcC--CCcEEEEEecCc-eEEeecccCcc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGANTFN 246 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~~~ 246 (712)
..+.+..++|+++ .+++.+.++.+.+|+. ..++....+.+|...|.+++|+| ++.++++++.++ |++||.. ++.
T Consensus 658 ~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~ 734 (1249)
T 3sfz_A 658 DEVLCCAFSSDDS-YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKE 734 (1249)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSS
T ss_pred CCEEEEEEecCCC-EEEEEeCCCeEEEEEC-CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-Ccc
Confidence 3455566677665 5677778899999999 56778888999999999999999 556899999999 8899999 777
Q ss_pred eeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc---------------
Q 005140 247 RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA--------------- 309 (712)
Q Consensus 247 ~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~--------------- 309 (712)
.+..+ .|. .|.+++|+|+|++|++++.+ +.|++||+.++.....+........
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSAD----------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESS----------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECC----------CeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 66655 344 49999999999999999999 9999999988876655432110000
Q ss_pred ----------cCC-------------------CCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 310 ----------VGG-------------------TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 310 ----------~~~-------------------~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
.+. .+... ...+++|+| ++.++++++ ++.|.+|++.++..+.....|
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 881 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS--TIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGH 881 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS--CCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC--ceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCC
Confidence 000 00001 112689999 999999998 999999999998888777778
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe--------------------------------------------
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ-------------------------------------------- 395 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~-------------------------------------------- 395 (712)
...|.+++|+|+++.|++ ++.++.+++|...
T Consensus 882 ~~~v~~v~~spdg~~l~s-----~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 882 LSWVHGVMFSPDGSSFLT-----ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp SSCEEEEEECTTSSEEEE-----EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ccceEEEEECCCCCEEEE-----EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 888999999999999998 6777777776532
Q ss_pred ---------------------------------cCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc---
Q 005140 396 ---------------------------------IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY--- 439 (712)
Q Consensus 396 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~--- 439 (712)
..+...+.....+......+.|+|+|++|++++.++....|...
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 11111111112233344567888888888888777653222211
Q ss_pred ----------------------------ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 440 ----------------------------TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 440 ----------------------------~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
+.+.+|++..... ...+.+|.+.|.+++|+|+|++|++++.|+ .|+
T Consensus 1037 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~---~v~ 1110 (1249)
T 3sfz_A 1037 YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI---ERDFTCHQGTVLSCAISSDATKFSSTSADK---TAK 1110 (1249)
T ss_dssp EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC---CEEEECCSSCCCCEEECSSSSSCEEECCSS---CCC
T ss_pred eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce---eEEEcccCCcEEEEEECCCCCEEEEEcCCC---cEE
Confidence 1234444432221 234567899999999999999999999999 899
Q ss_pred EEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----------ccccce
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----------AEHFMA 558 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~~v 558 (712)
+|++.++. .+..+.+ ..+++++|||+|++|++++. ||.|++||+.+++.+.. .|...|
T Consensus 1111 iwd~~~~~------~~~~l~~h~~~v~~~~~s~dg~~lat~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 1181 (1249)
T 3sfz_A 1111 IWSFDLLS------PLHELKGHNGCVRCSAFSLDGILLATGDD---NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181 (1249)
T ss_dssp EECSSSSS------CSBCCCCCSSCEEEEEECSSSSEEEEEET---TSCCCEEESSSSCCCCCCCCCC-------CCSCC
T ss_pred EEECCCcc------eeeeeccCCCcEEEEEECCCCCEEEEEeC---CCEEEEEECCCCceEEEeccccccccccccCceE
Confidence 99997654 3334443 36899999999999999998 99999999998876653 366889
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHH
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
++++|||||++|++++ +.+++|++. |..+... +...+.+++|+|++..|++++.++.+
T Consensus 1182 ~~l~fs~dg~~l~s~~-------g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v 1242 (1249)
T 3sfz_A 1182 TDVCFSPDSKTLVSAG-------GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGIL 1242 (1249)
T ss_dssp CEEEECTTSSCEEEES-------SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCE
T ss_pred EEEEECCCCCEEEECC-------CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEE
Confidence 9999999999998763 699999986 5544433 55789999999999999998887654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=299.51 Aligned_cols=281 Identities=13% Similarity=0.205 Sum_probs=226.7
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
....+.+|...|++++|+|+|++||+++.|+ |+|||.. +......+. ...|.+++|+|+|.+|++++.|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d------- 127 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD------- 127 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCEEEECTTSSEEEEESTT-------
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCcceEEecCCCCEEEEEECCCCCEEEEeeCC-------
Confidence 3456789999999999999999999999999 8899988 666555543 3459999999999999999999
Q ss_pred CCccEEEEEEccCC------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc
Q 005140 282 ANRVVINIFDVRTG------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 354 (712)
Q Consensus 282 ~~~~~I~iwd~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~ 354 (712)
+.+++|++... .....+.+|...+. +++|+| ++.+|++++ |++|++||+.+++.+.
T Consensus 128 ---~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 128 ---NKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-------------ACSFTN-SDMQILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp ---SEEEEEECCCCTTCCSGGGCEEEEECSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ---CCEEEEEEeccccccccccceeeeccCCcEE-------------EEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEE
Confidence 99999998643 23445555655543 689999 999999998 9999999999988877
Q ss_pred cccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 355 KKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
....|...|.+++|+|+ +++|++ ++.|+.+++|. +.+.+
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~s-----gs~Dg~v~~wd--~~~~~-------------------------------- 231 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVS-----GGCDKKAMVWD--MRSGQ-------------------------------- 231 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEE-----EETTSCEEEEE--TTTCC--------------------------------
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEE-----EeCCCeEEEEE--CCCCc--------------------------------
Confidence 77677778888888774 567777 55666655443 21110
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 512 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 512 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++||++... .+..+..
T Consensus 232 ----------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~---~v~lwd~~~~~------~~~~~~~ 280 (354)
T 2pbi_B 232 ----------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDA---TCRLYDLRADR------EVAIYSK 280 (354)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE------EEEEECC
T ss_pred ----------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEECCCCc------EEEEEcC
Confidence 0123447889999999999999999999999 99999997643 2333322
Q ss_pred ----CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 513 ----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 513 ----~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
..+.+++|+|+|++|++++. |+.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.++|
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~-----D~~v~v 352 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYN---DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW-----DHTLRV 352 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET-----TSEEEE
T ss_pred CCcccceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC-----CCCEEe
Confidence 25789999999999999998 99999999988876654 67789999999999999999999 999999
Q ss_pred EE
Q 005140 587 WS 588 (712)
Q Consensus 587 w~ 588 (712)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 95
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=309.80 Aligned_cols=289 Identities=16% Similarity=0.249 Sum_probs=223.9
Q ss_pred CCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 202 HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 202 ~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.......+.+|...|++++|||+|++||+++.|+ |+|||.. +...+..+ +...|.+++|+|+|++|++++.|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d---- 129 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD---- 129 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEEECCCTTCCCCEECTTSSEEEECCSS----
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCccceEEecCCCCEEEEEECCCCCEEEEeeCC----
Confidence 3444567899999999999999999999999999 8899998 66666555 33459999999999999999999
Q ss_pred CcCCCccEEEEEEccCCc-------eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCC
Q 005140 279 PRDANRVVINIFDVRTGK-------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~ 349 (712)
+.|++|++.+.. ..+.+.+|...+. ++.|+| + +..|++++ |++|++||+.+
T Consensus 130 ------~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~-------------~~~~~~-~~~~~l~s~s~D~~i~~wd~~~ 189 (380)
T 3iz6_a 130 ------SACSIFNLSSQADRDGNMPVSRVLTGHKGYAS-------------SCQYVP-DQETRLITGSGDQTCVLWDVTT 189 (380)
T ss_dssp ------SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC-------------CCBCCS-SSSSCEEEECTTSCEEEECTTT
T ss_pred ------CcEEEEECCCCccccCCccceeeccCCCcceE-------------EEEEec-CCCCEEEEECCCCcEEEEEcCC
Confidence 999999986532 3445666665542 578888 6 45688888 99999999998
Q ss_pred ceecccc-----cccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE
Q 005140 350 FTLIDKK-----SLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 350 ~~~~~~~-----~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
+..+... ..|...|.+++|+| ++.+|++ ++.|+.+++|
T Consensus 190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-----gs~D~~v~~w------------------------------- 233 (380)
T 3iz6_a 190 GQRISIFGSEFPSGHTADVLSLSINSLNANMFIS-----GSCDTTVRLW------------------------------- 233 (380)
T ss_dssp CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE-----EETTSCEEEE-------------------------------
T ss_pred CcEEEEeecccCCCCccCeEEEEeecCCCCEEEE-----EECCCeEEEE-------------------------------
Confidence 7765332 23445566777655 5556665 5555554443
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
+++..... ...+.+|.+.|.+++|+|+|++|++++.|+ .|++||++++.
T Consensus 234 ----------------------d~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~---~i~lwd~~~~~---- 282 (380)
T 3iz6_a 234 ----------------------DLRITSRA--VRTYHGHEGDINSVKFFPDGQRFGTGSDDG---TCRLFDMRTGH---- 282 (380)
T ss_dssp ----------------------ETTTTCCC--CEEECCCSSCCCEEEECTTSSEEEEECSSS---CEEEEETTTTE----
T ss_pred ----------------------ECCCCCcc--eEEECCcCCCeEEEEEecCCCeEEEEcCCC---eEEEEECCCCc----
Confidence 33221111 133557899999999999999999999999 99999997654
Q ss_pred eeEEEEeCCC---------ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee------ccccceeeEEECCCCC
Q 005140 504 VSKLTTLKGK---------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT------AEHFMATDVEWDPTGR 568 (712)
Q Consensus 504 ~~~~~~~~~~---------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~------~~~~~v~~~~~spdg~ 568 (712)
.+..+..+ .+++++|+|+|++|++++. ||.|++||+..++.+.. .|...|++++|+|+|+
T Consensus 283 --~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 283 --QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS---NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp --EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT---TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred --EEEEecccccccccccCceEEEEECCCCCEEEEEEC---CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 33333221 3789999999999999998 99999999987766543 5678899999999999
Q ss_pred EEEEEEccceeccccEEEEEecCc
Q 005140 569 YVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 569 ~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+|++++. |+.++||++.+.
T Consensus 358 ~l~sgs~-----D~~i~iW~~~~~ 376 (380)
T 3iz6_a 358 ALCTGSW-----DKNLKIWAFSGH 376 (380)
T ss_dssp EEEEECT-----TSCEEEEECCSS
T ss_pred EEEEeeC-----CCCEEEEecCCC
Confidence 9999999 999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=295.27 Aligned_cols=292 Identities=15% Similarity=0.298 Sum_probs=225.5
Q ss_pred cccccCCCc-ccceEEEcCCCcEEEEEecCc-eEEeecccCcceee--e--ecCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 206 EPVYKRSYW-TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM--R--YAHP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 206 ~~~~~~~~~-~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~--~--~~~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
...+++|.. .|.+++|||+|++||+++.|+ |+||+.. +..... . ..|. .|.+++|||+|++|++++.|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D---- 82 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD---- 82 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEE-TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT----
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcC-CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC----
Confidence 345678887 899999999999999999999 8899998 443221 1 2344 49999999999999999999
Q ss_pred CcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce---e
Q 005140 279 PRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT---L 352 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~---~ 352 (712)
++|+||++.++. .+..+.+|...+. +++|+| ++++|++++ |++|++|++.++. .
T Consensus 83 ------~~v~iw~~~~~~~~~~~~~~~h~~~v~-------------~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 83 ------ATTCIWKKNQDDFECVTTLEGHENEVK-------------SVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp ------SCEEEEEECCC-EEEEEEECCCSSCEE-------------EEEECT-TSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred ------CcEEEEEccCCCeEEEEEccCCCCCce-------------EEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 999999987764 5778888887764 799999 999999999 9999999997653 2
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
+.....|...|.+++|+|++.+|++ ++.++.+++|....
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s-----~s~d~~i~~w~~~~------------------------------------ 181 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLAS-----ASYDDTVKLYREEE------------------------------------ 181 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEE-----EETTSCEEEEEEET------------------------------------
T ss_pred EEEecCcCCCeEEEEECCCCCEEEE-----EeCCCcEEEEEecC------------------------------------
Confidence 3333456667888888888888887 66676666554321
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc---------Cc
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA---------GR 503 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~---------~~ 503 (712)
.. ......+.+|...|.+++|+|+|++|++++.|+ .|++|+....... ..
T Consensus 182 -----------------~~-~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~---~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 182 -----------------DD-WVCCATLEGHESTVWSLAFDPSGQRLASCSDDR---TVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp -----------------TE-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEEECTTCTTCCCCC---CE
T ss_pred -----------------CC-EEEEEEecCCCCceEEEEECCCCCEEEEEeCCC---eEEEeccccCCCCccceeeccCCc
Confidence 00 011134558899999999999999999999999 9999997532211 11
Q ss_pred eeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce--------ee---eeccccceeeEEECCCCC-
Q 005140 504 VSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--------TM---ATAEHFMATDVEWDPTGR- 568 (712)
Q Consensus 504 ~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~--------~~---~~~~~~~v~~~~~spdg~- 568 (712)
...+..+. ...+.+++|+|++..|++++. |+.|++|+..... .. ...|...|++++|+|++.
T Consensus 241 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp EEEEEEECSSCSSCEEEEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred cceeEEecCCCCCcEEEEEEecCCCEEEEEeC---CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 22334443 336899999999999999998 9999999987432 11 125778999999999984
Q ss_pred EEEEEEccceeccccEEEEEecCc
Q 005140 569 YVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 569 ~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+||+++. |+.|+||++...
T Consensus 318 ~laS~s~-----Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 318 LLASCSD-----DGEVAFWKYQRP 336 (345)
T ss_dssp EEEEEET-----TSCEEEEEECC-
T ss_pred EEEEcCC-----CCcEEEEEecCC
Confidence 9999999 999999998743
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=300.20 Aligned_cols=301 Identities=11% Similarity=0.124 Sum_probs=209.0
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec------Cc-eEEeecccCccee-----ee
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR------QG-AAVWGGANTFNRL-----MR 250 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~------~~-i~iw~~~~~~~~~-----~~ 250 (712)
..|+...++.....|+.+.. ....|...|++++|||||++||+++. ++ +.+|+.. +.... ..
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~-~~~~~~~~~~~~ 90 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP-EGAPNESLCTAG 90 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC-C---CGGGCSEE
T ss_pred ceEEecCCCccccccCCCCC-----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC-CCCcceeEeccc
Confidence 34555666667778988422 23578999999999999999999997 44 6677765 33322 12
Q ss_pred ecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec----cCCCcccccCCCCCcCCCCcCeEE
Q 005140 251 YAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF----KGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 251 ~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
..| ..|.+++|+|++++| +++.+ ++|+|||+.+++.+... .+|...+. +++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l-~~s~d----------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~-------------~v~ 146 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGIL-VASDS----------GAVELWEILEKESLLVNKFAKYEHDDIVK-------------TLS 146 (357)
T ss_dssp EECSSCEEEEEEETTTEEE-EEETT----------SCEEEC--------CCCCEEECCCSSCEE-------------EEE
T ss_pred CCCCCCEEEEEEcCCCCEE-EEECC----------CEEEEeeccccceeEEEeeccCCCCCCEE-------------EEE
Confidence 234 459999999998755 56778 89999999888755432 35555543 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|+| ++++|++++ |+.|++||+.+++.+.....|...|.+++|+|++. .+++ ++.++.+++| ++.+.+.+.
T Consensus 147 ~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s-----~~~dg~v~~w--d~~~~~~~~ 218 (357)
T 4g56_B 147 VFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS-----CGEDGRILLW--DTRKPKPAT 218 (357)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE-----EETTSCEEEC--CTTSSSCBC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee-----eccCCceEEE--ECCCCceee
Confidence 999 999999999 99999999999988877777888899999999975 5666 5566665554 332221110
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIH 482 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~ 482 (712)
.+.+..|...+.+++|+|+ +.+|++++
T Consensus 219 ----------------------------------------------------~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 219 ----------------------------------------------------RIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ----------------------------------------------------BCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ----------------------------------------------------eeeeccccccccchhhhhcccceEEEee
Confidence 0112245678899999997 46788888
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeee-ccccce
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMA 558 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v 558 (712)
.|+ .|++||++++.. +..+. ...|++++|+|+| ++|++++. |+.|+|||+++++++.. .|...|
T Consensus 247 ~d~---~i~~wd~~~~~~------~~~~~~~~~~v~~l~~sp~~~~~lasgs~---D~~i~iwd~~~~~~~~~~~H~~~V 314 (357)
T 4g56_B 247 ETG---NVSLVNIKNPDS------AQTSAVHSQNITGLAYSYHSSPFLASISE---DCTVAVLDADFSEVFRDLSHRDFV 314 (357)
T ss_dssp SSS---CEEEEESSCGGG------CEEECCCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTSCEEEEECCCSSCE
T ss_pred ccc---ceeEEECCCCcE------eEEEeccceeEEEEEEcCCCCCEEEEEeC---CCEEEEEECCCCcEeEECCCCCCE
Confidence 898 899999977552 33443 4479999999997 57888988 99999999999888765 567899
Q ss_pred eeEEECC-CCCEEEEEEccceeccccEEEEEec
Q 005140 559 TDVEWDP-TGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 559 ~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++++|+| ++++|++++. |+.|++|++.
T Consensus 315 ~~vafsP~d~~~l~s~s~-----Dg~v~iW~~~ 342 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGW-----DHKVLHHHLP 342 (357)
T ss_dssp EEEEECSSSTTEEEEEET-----TSCEEEEECC
T ss_pred EEEEEeCCCCCEEEEEcC-----CCeEEEEECC
Confidence 9999999 8999999999 9999999986
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=337.88 Aligned_cols=362 Identities=10% Similarity=0.111 Sum_probs=261.4
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
..+|...|++++|||+|++||+|+.++ |+||+.. +...+..+.|.. |.+++|+| |++|++++.| ++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D----------~~ 80 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK----------DT 80 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEECSSCCCEEEEEEET-TTEEEEEETT----------CE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc----------Ce
Confidence 357889999999999999999999999 8899998 676666666554 99999999 8899999999 99
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-----------c
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-----------D 354 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-----------~ 354 (712)
|+|||+.+++.+..+..+ ..+. +++|+| ++++|++++ ||.|++||+.++.+. .
T Consensus 81 v~lWd~~~~~~~~~~~~~-~~V~-------------~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~ 145 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVFVP-GKIT-------------SIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSF 145 (902)
T ss_dssp EEEEETTTCSEEEEEECS-SCEE-------------EEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHT
T ss_pred EEEEECCCCcEEEEEcCC-CCEE-------------EEEECC-CCCEEEEEcCCCcEEEEECCCCccccceecccccccc
Confidence 999999999998888633 3332 799999 999999999 999999999987653 1
Q ss_pred cccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee------------------eecceeE
Q 005140 355 KKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF------------------SVSDCKM 415 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~ 415 (712)
....|...|.+++|+|++ ..|++ ++.++. | +|++.+.+.+.....+ ......+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~-----g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLI-----SYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEE-----ECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred ccccCCCCeEEEEEccCCCCEEEE-----EeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence 223466789999999974 66776 555544 5 7777766554433222 2346678
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe---c-------------CCCCceEEEEEee----CC
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL---D-------------NKNDKIIAFAWEP----KG 475 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---~-------------~h~~~v~~~~~sp----~g 475 (712)
.|+|+|.+|++++.++. +.+|++... ..+....+ . .|...|.+++|+| ++
T Consensus 218 ~fspdg~~lasgs~Dg~---------i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~ 287 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNS---------LVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY 287 (902)
T ss_dssp EECTTSSEEEEEETTCC---------EEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred EEcCCCCEEEEEECCCe---------EEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence 99999999999999987 788887543 22111111 0 1345788888865 32
Q ss_pred -CEEEEEEcCCC--CCeEEEEEeecc----------------------------c-------------------cc----
Q 005140 476 -HRFAVIHGDSP--RPDISFYSMRTA----------------------------Q-------------------HA---- 501 (712)
Q Consensus 476 -~~l~~~~~d~~--~~~v~i~d~~~~----------------------------~-------------------~~---- 501 (712)
..|++++.+.. ...+.+|++... . ..
T Consensus 288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l 367 (902)
T 2oaj_A 288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI 367 (902)
T ss_dssp EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence 34555544321 114555553100 0 00
Q ss_pred ------CceeEEE-------------------------------------------------EeCCC--ceeEEEEccCC
Q 005140 502 ------GRVSKLT-------------------------------------------------TLKGK--QANALFWSPSG 524 (712)
Q Consensus 502 ------~~~~~~~-------------------------------------------------~~~~~--~v~~l~~spdg 524 (712)
..+.... .+.++ .+..++|+|+|
T Consensus 368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence 0000000 00111 12345678999
Q ss_pred CeEEEEeccCCCceEEEEECCcceeee-------------eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELETMA-------------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~~~-------------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++|++++. |++|++||+.++.+.. ..|...|++++|||||++||+++. |+.|+||++.+
T Consensus 448 ~~laSgs~---DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-----DgtV~lwd~~~ 519 (902)
T 2oaj_A 448 TAFITGHS---NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-----TGDVVLFKYEV 519 (902)
T ss_dssp EEEEEEET---TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-----TSCEEEEEEEE
T ss_pred cEEEEecC---CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-----CcEEEEEEecC
Confidence 99999998 9999999998764321 156678999999999999999999 99999999974
Q ss_pred ce----------------------------------------------ee--eecccceeeeEEecCCCCCCChhhHHHH
Q 005140 592 KL----------------------------------------------LY--RTLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 592 ~~----------------------------------------------~~--~~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.. +. ..|.+.|++++|+|+| +|++++.|+.|
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 31 22 2267899999999999 99999999887
Q ss_pred H
Q 005140 624 A 624 (712)
Q Consensus 624 ~ 624 (712)
+
T Consensus 599 ~ 599 (902)
T 2oaj_A 599 M 599 (902)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=288.23 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=229.6
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....|.+|...|++++|||+|++||+++.++ |+|||.. +...+..+. | ..|.+++|+|++++|++++.|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------ 76 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------ 76 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCceeEEeeccCCcEEEEEEeCCCCEEEEECCC------
Confidence 45567889999999999999999999999999 8899999 777666664 3 359999999999999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSL 358 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~ 358 (712)
++|++||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+.++. .......
T Consensus 77 ----~~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 77 ----FRIRVFNYNTGEKVVDFEAHPDYIR-------------SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp ----SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred ----CEEEEEECCCCcEEEEEeCCCCcEE-------------EEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999988764 799999 999999999 9999999998763 3334456
Q ss_pred cccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 359 KVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 359 ~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
|...|.+++|+| ++..|++ ++.|+.+++|. +......
T Consensus 139 h~~~v~~v~~~p~~~~~l~s-----gs~D~~v~iwd--~~~~~~~----------------------------------- 176 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFAS-----GCLDRTVKVWS--LGQSTPN----------------------------------- 176 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEE-----EETTSEEEEEE--TTCSSCS-----------------------------------
T ss_pred cCCcEEEEEECCCCCCEEEE-----EeCCCeEEEEE--CCCCCcc-----------------------------------
Confidence 777799999999 5677887 66777666553 2211100
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEee--CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
. ....+|...+..++|+| ++.+|++++.|+ .|++||++++. .+..+.+|
T Consensus 177 -----------------~-~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~---~i~iWd~~~~~------~~~~~~~h~~ 229 (304)
T 2ynn_A 177 -----------------F-TLTTGQERGVNYVDYYPLPDKPYMITASDDL---TIKIWDYQTKS------CVATLEGHMS 229 (304)
T ss_dssp -----------------E-EEECCCTTCEEEEEECCSTTCCEEEEEETTS---EEEEEETTTTE------EEEEEECCSS
T ss_pred -----------------c-eeccCCcCcEEEEEEEEcCCCCEEEEEcCCC---eEEEEeCCCCc------cceeeCCCCC
Confidence 0 00114456788888887 778999999999 99999997654 55666554
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCC--EEEEEEccceeccccEEEEEe
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR--YVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~--~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+.+++|+|++++|++++. ||.|++||+.+++++.+ .+...+.+++|+|+|+ ++++++ ++++.+|++
T Consensus 230 ~v~~~~~~p~~~~l~s~s~---Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~------~~g~~~~~~ 300 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF------DNGFTVLSL 300 (304)
T ss_dssp CEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE------TTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEcC---CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec------CCceEEEEe
Confidence 7899999999999999998 99999999999888776 4557899999999986 466665 477888887
Q ss_pred cC
Q 005140 590 NG 591 (712)
Q Consensus 590 ~g 591 (712)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 54
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=293.76 Aligned_cols=317 Identities=10% Similarity=0.104 Sum_probs=250.5
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
|...+.+++|||||+++|++..++ +.+|........+....|.. |.+++|+|++++|++++ + +.|++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d----------g~i~i 76 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K----------GCVKV 76 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B----------SEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-C----------CeEEE
Confidence 346789999999999999888766 66776653455555566665 99999999999999998 8 89999
Q ss_pred EEccCCceeeecc-----CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce--eccccccccc
Q 005140 290 FDVRTGKVMRDFK-----GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT--LIDKKSLKVE 361 (712)
Q Consensus 290 wd~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~ 361 (712)
||+.++.....+. .|...+. +++|+| ++++|++++ ++.|++|++.++. .......+..
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIR-------------SCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEE-------------EEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred EECCCCCceeeeecccccCCCCcEE-------------EEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence 9998776433332 4444432 799999 999999988 9999999999776 3333445666
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.+.+++|+|++++|++ ++.++. |.+|++.+.+.+.....+......+.|+|+|.+|++++.++.
T Consensus 143 ~i~~~~~~~~~~~l~~-----~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--------- 206 (337)
T 1gxr_A 143 ACYALAISPDSKVCFS-----CCSDGN--IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT--------- 206 (337)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE---------
T ss_pred ceEEEEECCCCCEEEE-----EeCCCc--EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc---------
Confidence 7999999999999998 555555 556677666666555555666778899999999999998876
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
+.+|++.... ... .+ .|...+.+++|+|++++|++++.++ .|++|++.++.. .........+.+++|+
T Consensus 207 i~~~d~~~~~-~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~~~---~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~ 274 (337)
T 1gxr_A 207 VRSWDLREGR-QLQ--QH-DFTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNKPDK-----YQLHLHESCVLSLKFA 274 (337)
T ss_dssp EEEEETTTTE-EEE--EE-ECSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSSCE-----EEECCCSSCEEEEEEC
T ss_pred EEEEECCCCc-eEe--ee-cCCCceEEEEECCCCCEEEEEcCCC---cEEEEECCCCCe-----EEEcCCccceeEEEEC
Confidence 7888876432 111 22 4688999999999999999999998 899999976431 1111224479999999
Q ss_pred cCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
|+|++|++++. +|.|++|++.+++.+.. .+...+++++|+|+|++|++++. |+.+++|++
T Consensus 275 ~~~~~l~~~~~---dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~ 335 (337)
T 1gxr_A 275 YCGKWFVSTGK---DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-----DKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-----TSCEEEEEE
T ss_pred CCCCEEEEecC---CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC-----CCeEEEEEE
Confidence 99999999998 99999999998877754 56688999999999999999999 999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=287.93 Aligned_cols=286 Identities=14% Similarity=0.201 Sum_probs=220.6
Q ss_pred ccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCc----ceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
..+.+|...|++++|+|++ ++|++++.|+ |++|+..+.. ..+..+ .|. .|.+++|+|+|++|++++.|
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---- 86 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD---- 86 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC----
Confidence 3578999999999999965 8999999999 8899986221 223334 344 59999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
++|+|||+.+++.++.+.+|...+. +++|+| ++.+|++++ |++|++|++... .+....
T Consensus 87 ------~~v~~wd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~s~s~D~~i~vwd~~~~-~~~~~~ 145 (319)
T 3frx_A 87 ------KTLRLWDVATGETYQRFVGHKSDVM-------------SVDIDK-KASMIISGSRDKTIKVWTIKGQ-CLATLL 145 (319)
T ss_dssp ------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSCEEEEEETTSCEEEEETTSC-EEEEEC
T ss_pred ------CEEEEEECCCCCeeEEEccCCCcEE-------------EEEEcC-CCCEEEEEeCCCeEEEEECCCC-eEEEEe
Confidence 9999999999999999999988764 799999 999999999 999999999743 333444
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.|...|.++.|+|.... .+++..+++++.++.
T Consensus 146 ~h~~~v~~~~~~~~~~~-------------------------------------------~~~~~~l~s~~~d~~----- 177 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKA-------------------------------------------DDDSVTIISAGNDKM----- 177 (319)
T ss_dssp CCSSCEEEEEECCC-------------------------------------------------CCEEEEEETTSC-----
T ss_pred ccCCcEEEEEEccCCCC-------------------------------------------CCCccEEEEEeCCCE-----
Confidence 56667888888875320 112223333333333
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCcee
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 516 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 516 (712)
+.+|++.... ....+.+|...|.+++|+|+|++|++++.|+ .|++||+.++. .+..+. ...+.
T Consensus 178 ----i~~wd~~~~~---~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~i~iwd~~~~~------~~~~~~~~~~v~ 241 (319)
T 3frx_A 178 ----VKAWNLNQFQ---IEADFIGHNSNINTLTASPDGTLIASAGKDG---EIMLWNLAAKK------AMYTLSAQDEVF 241 (319)
T ss_dssp ----EEEEETTTTE---EEEEECCCCSCEEEEEECTTSSEEEEEETTC---EEEEEETTTTE------EEEEEECCSCEE
T ss_pred ----EEEEECCcch---hheeecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc------EEEEecCCCcEE
Confidence 3444443211 1234568899999999999999999999999 99999997654 444444 34799
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----------ccccceeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
+++|+|+|.+|++++ ++.+++|+++....+.. .+...+.+++|||||++|++++. |+.|+|
T Consensus 242 ~~~~sp~~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~-----Dg~i~v 312 (319)
T 3frx_A 242 SLAFSPNRYWLAAAT----ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT-----DNVIRV 312 (319)
T ss_dssp EEEECSSSSEEEEEE----TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-----TSCEEE
T ss_pred EEEEcCCCCEEEEEc----CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-----CceEEE
Confidence 999999999999887 56699999987655432 23456889999999999999999 999999
Q ss_pred EEec
Q 005140 587 WSFN 590 (712)
Q Consensus 587 w~~~ 590 (712)
|++.
T Consensus 313 Wd~~ 316 (319)
T 3frx_A 313 WQVM 316 (319)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9975
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=289.59 Aligned_cols=292 Identities=13% Similarity=0.180 Sum_probs=227.3
Q ss_pred cccccCCCcccceEEE-----cC-CCcEEEEEecCc-eEEeecccC------cceeeee-cCC-CeeEEEecCCCCEEEE
Q 005140 206 EPVYKRSYWTESFVQW-----SP-LGTYLATVHRQG-AAVWGGANT------FNRLMRY-AHP-QVKLIDFSPGEKYLVT 270 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~-----Sp-dg~~lat~~~~~-i~iw~~~~~------~~~~~~~-~~~-~v~~i~~Spdg~~l~t 270 (712)
...+.+|...|++++| +| +|++||+++.|+ |+||++... ......+ .|. .|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3467899999999999 77 999999999999 889998621 1222333 344 5999999999999999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~ 349 (712)
++.| ++|++||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+..
T Consensus 94 ~s~D----------~~v~lwd~~~~~~~~~~~~h~~~v~-------------~v~~sp-~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 94 SSWD----------KTLRLWDLRTGTTYKRFVGHQSEVY-------------SVAFSP-DNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp EETT----------SEEEEEETTSSCEEEEEECCCSCEE-------------EEEECS-STTEEEEEETTSCEEEEESSS
T ss_pred EcCC----------CcEEEEECCCCcEEEEEcCCCCcEE-------------EEEECC-CCCEEEEEcCCCEEEEEeccC
Confidence 9999 9999999999999999999987764 799999 999999998 99999999874
Q ss_pred ceecc--cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEE
Q 005140 350 FTLID--KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK 427 (712)
Q Consensus 350 ~~~~~--~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~ 427 (712)
..... ....|...|.+++|+|++.... .++|.+.+|+++
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------------------~~~~~~~~l~s~ 190 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSAN---------------------------------------KVQPFAPYFASV 190 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCS---------------------------------------CCCSSCCEEEEE
T ss_pred CceeeeecccCCCceeeeeeecccccccc---------------------------------------ccCCCCCEEEEE
Confidence 33221 1124556689999998753211 124556677777
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEE
Q 005140 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKL 507 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~ 507 (712)
+.++. +.+|+.. . .....+.+|...|.+++|+|+|++|++++.|+ .|++||+..... ..
T Consensus 191 ~~d~~---------i~iwd~~--~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg---~v~iwd~~~~~~-----~~ 249 (343)
T 2xzm_R 191 GWDGR---------LKVWNTN--F--QIRYTFKAHESNVNHLSISPNGKYIATGGKDK---KLLIWDILNLTY-----PQ 249 (343)
T ss_dssp ETTSE---------EEEEETT--T--EEEEEEECCSSCEEEEEECTTSSEEEEEETTC---EEEEEESSCCSS-----CS
T ss_pred cCCCE---------EEEEcCC--C--ceeEEEcCccccceEEEECCCCCEEEEEcCCC---eEEEEECCCCcc-----cc
Confidence 77665 6777621 1 12245668999999999999999999999999 999999954322 12
Q ss_pred EEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee--e-------------ccccceeeEEECCCCCEEE
Q 005140 508 TTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--T-------------AEHFMATDVEWDPTGRYVA 571 (712)
Q Consensus 508 ~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~--~-------------~~~~~v~~~~~spdg~~l~ 571 (712)
..+ .++.+++++|+|++++++++. |+.|++|++.+++... . .|...+++++|+|+|++|+
T Consensus 250 ~~~~~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 250 REFDAGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp EEEECSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred eeecCCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 222 356799999999999887654 7889999998655432 1 3556799999999999999
Q ss_pred EEEccceeccccEEEEEec
Q 005140 572 TAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. |+.|++|++.
T Consensus 326 sg~~-----Dg~v~~w~~~ 339 (343)
T 2xzm_R 326 AGFT-----DGVIRTFSFE 339 (343)
T ss_dssp EEET-----TSEEEEEEEE
T ss_pred EecC-----CceEEEEEEE
Confidence 9999 9999999975
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=311.68 Aligned_cols=322 Identities=13% Similarity=0.252 Sum_probs=252.1
Q ss_pred CcccceEEEcCCCc-EEEEE----------ecCc-eEEeecccCcc---eeeeecCC-CeeEEEecCCCCEEEEEcCCCC
Q 005140 213 YWTESFVQWSPLGT-YLATV----------HRQG-AAVWGGANTFN---RLMRYAHP-QVKLIDFSPGEKYLVTYSSHEP 276 (712)
Q Consensus 213 ~~~v~~v~~Spdg~-~lat~----------~~~~-i~iw~~~~~~~---~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~ 276 (712)
...+.+++|||+|+ +||++ +.++ |+||+.. +.. .+..+.|. .|.+++|+|++++|++++.+
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN-- 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS--
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC--
Confidence 35788999999997 99999 7777 8999998 543 44455555 49999999999999999999
Q ss_pred CCCcCCCccEEEEEEccC----CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCc
Q 005140 277 SNPRDANRVVINIFDVRT----GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~ 350 (712)
+.|++||+.+ .+.+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.++
T Consensus 89 --------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 89 --------GSLELYSTNEANNAINSMARFSNHSSSVK-------------TVKFNA-KQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp --------SCEEEECCSSTTSCCCEEEECCCSSSCCC-------------EEEECS-SSTTBEEEECSSSCEEBCBTTTT
T ss_pred --------CeEEEeecccccccccchhhccCCccceE-------------EEEEcC-CCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999987 357888888877663 799999 8 88999998 999999999877
Q ss_pred e------ecc---cccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee------eeccee
Q 005140 351 T------LID---KKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF------SVSDCK 414 (712)
Q Consensus 351 ~------~~~---~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~ 414 (712)
. ... ....|...|.+++|+|+ +.+|++ ++.++. |.+|++.+.+.+...... ......
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----AGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE-----ESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEE-----EcCCCC--EEEEECCCCCcceEEeccccccccCCceEE
Confidence 5 221 12346667999999999 678887 556665 455666666555544433 455677
Q ss_pred EEECcCC-CEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceEEEEEee-CCCEEEEEEcCCCCCeEE
Q 005140 415 MYWQSSG-DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEP-KGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 415 ~~~s~~g-~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~ 491 (712)
+.|+|++ .+++++..++. .+.+.+|++.....+. ..+. +|...|.+++|+| ++++|++++.|+ .|+
T Consensus 220 ~~~~~~~~~~l~~~~~d~~------~~~i~~~d~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg---~v~ 288 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDN------DPSILIWDLRNANTPL--QTLNQGHQKGILSLDWCHQDEHLLLSSGRDN---TVL 288 (416)
T ss_dssp EEECSSCTTEEEEEECCSS------SCCCCEEETTSTTSCS--BCCCSCCSSCEEEEEECSSCSSCEEEEESSS---EEE
T ss_pred EEECCCCCCEEEEEECCCC------CceEEEEeCCCCCCCc--EEeecCccCceeEEEeCCCCCCeEEEEeCCC---CEE
Confidence 8999998 57888887751 0127899887643333 3344 7899999999999 999999999999 999
Q ss_pred EEEeecccccCceeEEEEeCC--CceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeeec---------------
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMATA--------------- 553 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--------------- 553 (712)
+||+.++. .+..+.. ..+.+++|+|++ .+|++++. ||.|++|++.+.......
T Consensus 289 ~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 289 LWNPESAE------QLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EECSSSCC------EEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCCCCCSSCC---------------
T ss_pred EeeCCCCc------cceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 99997654 4555544 478999999999 89999988 999999999865432211
Q ss_pred ----------------------cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 554 ----------------------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 554 ----------------------~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+...+++++|||+|++|++++. |+.|+||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-----d~~v~~w~~~~ 414 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD-----GKGVSITNPKI 414 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT-----SSCBCCBCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC-----CCeEEEEEecc
Confidence 3456779999999999999999 99999999763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=327.06 Aligned_cols=356 Identities=13% Similarity=0.178 Sum_probs=275.8
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....+++|...|++++|||+|++||+++.+| |.||+.. ++..+..+. |. .|.+++|||+|++|++++.+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 76 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------ 76 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC------
Confidence 44567889999999999999999999999998 8899998 777776664 44 49999999999999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc-eecccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSL 358 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~-~~~~~~~~ 358 (712)
+.|++||+.+++.+..+.+|...+. +++|+| ++++|++++ |+.|++|++.++ ........
T Consensus 77 ----g~i~vw~~~~~~~~~~~~~~~~~v~-------------~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 77 ----FRIRVFNYNTGEKVVDFEAHPDYIR-------------SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp ----SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred ----CeEEEEECCCCcEEEEEecCCCCEE-------------EEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999998887763 799999 999999998 999999999876 44444555
Q ss_pred cccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-ecceeEEECc--CCCEEEEEEcccccc
Q 005140 359 KVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQS--SGDYLAVKVDRYTKT 434 (712)
Q Consensus 359 ~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~--~g~~l~~~~~~~~~~ 434 (712)
|...|.+++|+| ++..|++ ++.++. |.+|++............. .....+.|+| +|.+|++++.++.
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~-----~~~dg~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-- 209 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFAS-----GCLDRT--VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-- 209 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEE-----EETTSE--EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE--
T ss_pred CCCcEEEEEEEcCCCCEEEE-----EeCCCe--EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE--
Confidence 777899999999 7888888 556655 5556665544433333222 4455678888 9999999998876
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--C
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--G 512 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~ 512 (712)
+.+|++.... ....+.+|...|.+++|+|++++|++++.|+ .|++|++.++. .+..+. .
T Consensus 210 -------i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~------~~~~~~~~~ 270 (814)
T 3mkq_A 210 -------IKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYK------VEKTLNVGL 270 (814)
T ss_dssp -------EEEEETTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCS------EEEEECCSS
T ss_pred -------EEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc------EEEEeecCC
Confidence 7888875432 2345668899999999999999999999999 99999997654 444444 3
Q ss_pred CceeEEEEccCCCe--EEEEeccCCCceEEEEECCcc----------eeeee----------------------------
Q 005140 513 KQANALFWSPSGRF--IVLAGLKGFNGQLEFYNVDEL----------ETMAT---------------------------- 552 (712)
Q Consensus 513 ~~v~~l~~spdg~~--l~~~~~~~~dg~v~iwd~~~~----------~~~~~---------------------------- 552 (712)
..+.+++|+|+|+. ++++. ++.+.+|++... ..+..
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGF----DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEE----TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred CcEEEEEEccCCCceEEEEEe----CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence 47999999999974 44444 677888886531 11110
Q ss_pred -------ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 553 -------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 553 -------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+...+++++|+|+|++|++++. +.+.+|++..... .+.+.+.+++|+|+++.+++++.++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~------~~~~i~~~~~~~~--~~~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 347 LQTKELGSVDVFPQSLAHSPNGRFVTVVGD------GEYVIYTALAWRN--KAFGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp CCCEEECCCSSCCSEEEECTTSSEEEEEET------TEEEEEETTTTEE--EEEEECSEEEECTTSSCEEEECTTCCEE
T ss_pred eeeecCCCCccCCceeEECCCCCEEEEecC------CEEEEEECccccc--cCCCceEEEEEeCCCCeEEEEeCCCcEE
Confidence 12235689999999999998874 8899999753322 2345677888888888888777666543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=290.62 Aligned_cols=282 Identities=10% Similarity=0.101 Sum_probs=214.2
Q ss_pred CCCcccceEEEcCCCcEEEEEecCceEEeeccc-----------Ccceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGAN-----------TFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~-----------~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.|...+.+++|||||++|++++...+++|+... ......... ...|.+++|+|++ +|++++.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d---- 102 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS---- 102 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT----
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC----
Confidence 455679999999999999999866677887430 011111222 3459999999985 68899999
Q ss_pred CcCCCccEEEEEEccCCceeeec----cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec
Q 005140 279 PRDANRVVINIFDVRTGKVMRDF----KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI 353 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~ 353 (712)
++|+|||+.+++.+..+ .+|...+. +++|+| +|++|++++ |++|++||+.+++.+
T Consensus 103 ------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~-------------~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 103 ------GAVELWELDENETLIVSKFCKYEHDDIVS-------------TVSVLS-SGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp ------SEEEEEEECTTSSCEEEEEEEECCSSCEE-------------EEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ------CEEEEEeccCCCceeEeeccccCCCCCEE-------------EEEECC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999998765443 36766653 799999 999999999 999999999999988
Q ss_pred ccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 354 DKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.....|...|.+++|+|++. +|++ ++.|+.+++| ++.+.+.+..
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s-----~s~D~~v~iw--d~~~~~~~~~---------------------------- 207 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLS-----CSEDNRILLW--DTRCPKPASQ---------------------------- 207 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEE-----EETTSCEEEE--ETTSSSCEEE----------------------------
T ss_pred EEEcCcCCceEEEEecCCCCCceee-----eccccccccc--cccccceeee----------------------------
Confidence 87778888999999999985 5566 6677776654 3332221110
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
+....|...+.+++|+|+ +++|++++.|+ .|++||++++. .+..+.
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---~v~~wd~~~~~------~~~~~~ 254 (344)
T 4gqb_B 208 ------------------------IGCSAPGYLPTSLAWHPQQSEVFVFGDENG---TVSLVDTKSTS------CVLSSA 254 (344)
T ss_dssp ------------------------CC----CCCEEEEEECSSCTTEEEEEETTS---EEEEEESCC--------CCEEEE
T ss_pred ------------------------eecceeeccceeeeecCCCCcceEEeccCC---cEEEEECCCCc------EEEEEc
Confidence 111134567889999995 56788899999 99999997655 344444
Q ss_pred C--CceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCE-EEEEEccceeccccEEE
Q 005140 512 G--KQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNI 586 (712)
Q Consensus 512 ~--~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~-l~t~s~~~~~~d~~v~i 586 (712)
+ ..|++++|+|+| ++|++++. |+.|+|||+.+++++.. .|...|++++|+|+|++ |++++. |+.|++
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~---D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~-----D~~v~~ 326 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSE---DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW-----DHQVVH 326 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET-----TSCEEE
T ss_pred CCCCCEEEEEEccCCCeEEEEEeC---CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC-----CCeEEE
Confidence 4 479999999998 57889988 99999999998887764 67789999999999975 668888 999999
Q ss_pred EEecCce
Q 005140 587 WSFNGKL 593 (712)
Q Consensus 587 w~~~g~~ 593 (712)
|++..+.
T Consensus 327 w~v~~~~ 333 (344)
T 4gqb_B 327 HVVPTEP 333 (344)
T ss_dssp EECCC--
T ss_pred EECCCCC
Confidence 9987543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=289.88 Aligned_cols=289 Identities=14% Similarity=0.181 Sum_probs=225.9
Q ss_pred CCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCC--------------------CeeEEEecCCCCEEEE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--------------------QVKLIDFSPGEKYLVT 270 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~--------------------~v~~i~~Spdg~~l~t 270 (712)
+|...|++++|||||++||+++...++||+.. ++..+..+... .|.+++|||+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 68999999999999999999987669999998 66666554211 2889999999999999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~ 349 (712)
++.| +.|+|||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+.+
T Consensus 141 ~~~d----------~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~p-~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 141 GAED----------RLIRIWDIENRKIVMILQGHEQDIY-------------SLDYFP-SGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp EETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred EcCC----------CeEEEEECCCCcEEEEEccCCCCEE-------------EEEEcC-CCCEEEEecCCCcEEEEECCC
Confidence 9999 9999999999999999999987763 799999 999999998 99999999998
Q ss_pred ceecccccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 350 FTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
+...... .+...+.+++|+| ++.+|++ ++.++.+++| +..+...+...
T Consensus 197 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~-----~s~d~~v~iw--d~~~~~~~~~~----------------------- 245 (393)
T 1erj_A 197 GQCSLTL-SIEDGVTTVAVSPGDGKYIAA-----GSLDRAVRVW--DSETGFLVERL----------------------- 245 (393)
T ss_dssp TEEEEEE-ECSSCEEEEEECSTTCCEEEE-----EETTSCEEEE--ETTTCCEEEEE-----------------------
T ss_pred CeeEEEE-EcCCCcEEEEEECCCCCEEEE-----EcCCCcEEEE--ECCCCcEEEee-----------------------
Confidence 8765433 2345688999999 7888888 6677776655 33222111000
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC------
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG------ 502 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~------ 502 (712)
.. ......+|...|.+++|+|+|++|++++.|+ .|++||+.+.....
T Consensus 246 -------------------~~-----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 246 -------------------DS-----ENESGTGHKDSVYSVVFTRDGQSVVSGSLDR---SVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp -------------------C-----------CCCSSCEEEEEECTTSSEEEEEETTS---EEEEEEC-------------
T ss_pred -------------------cc-----cccCCCCCCCCEEEEEECCCCCEEEEEeCCC---EEEEEECCCCCCcccccCCC
Confidence 00 0011237889999999999999999999999 99999997532110
Q ss_pred ceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC------CCCEEEE
Q 005140 503 RVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP------TGRYVAT 572 (712)
Q Consensus 503 ~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp------dg~~l~t 572 (712)
.......+.+| .+.+++|+|+|++|++++. |+.|++||+.+++.+.. .|...|.+++|+| ++.+|++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~---D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSK---DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 01122333333 6899999999999999998 99999999998887654 6778999999886 7889999
Q ss_pred EEccceeccccEEEEEec
Q 005140 573 AVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~ 590 (712)
++. |+.|+||++.
T Consensus 376 gs~-----Dg~i~iW~~~ 388 (393)
T 1erj_A 376 GSG-----DCKARIWKYK 388 (393)
T ss_dssp EET-----TSEEEEEEEE
T ss_pred ECC-----CCcEEECccc
Confidence 999 9999999986
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=279.20 Aligned_cols=286 Identities=16% Similarity=0.274 Sum_probs=229.8
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
....+.+|...|++++|+|+|++||+++.++ ++||+.. +......+. | ..|.+++|+|++++|++++.+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------- 86 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSNLLVSASDD------- 86 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-CcccchhhccCCCceEEEEEcCCCCEEEEECCC-------
Confidence 3446789999999999999999999999999 8899998 666555553 4 359999999999999999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+.|++||+.+++.+..+.+|...+. ++.|+| ++++|++++ |+.|++||+.+++.+.....|.
T Consensus 87 ---~~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 87 ---KTLKIWDVSSGKCLKTLKGHSNYVF-------------CCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp ---SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---CEEEEEECCCCcEEEEEcCCCCCEE-------------EEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 9999999999999999998877663 689999 999999999 9999999999888776666677
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..|.+++|+|++++|++ ++.++.+++| ++.+.+.+.
T Consensus 150 ~~v~~~~~~~~~~~l~~-----~~~d~~i~~w--d~~~~~~~~------------------------------------- 185 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVS-----SSYDGLCRIW--DTASGQCLK------------------------------------- 185 (312)
T ss_dssp SCEEEEEECTTSSEEEE-----EETTSCEEEE--ETTTCCEEE-------------------------------------
T ss_pred CcEEEEEEcCCCCEEEE-----EeCCCcEEEE--ECCCCceee-------------------------------------
Confidence 78999999999999888 6666665544 332211100
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--c---e
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--Q---A 515 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~---v 515 (712)
.....+...+..++|+|++++|++++.|+ .|++||+.++. .+..+.++ . +
T Consensus 186 ----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~------~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 186 ----------------TLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDYSKGK------CLKTYTGHKNEKYCI 240 (312)
T ss_dssp ----------------EECCSSCCCEEEEEECTTSSEEEEEETTT---EEEEEETTTTE------EEEEECSSCCSSSCC
T ss_pred ----------------EEeccCCCceEEEEECCCCCEEEEEcCCC---eEEEEECCCCc------EEEEEEecCCceEEE
Confidence 00113466788999999999999999999 99999997654 45555443 1 2
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
......+++.+|++++. ||.|++||+.+++.+.. .|...|.+++|+|++.+|++++.+ .|+.|++|+.+
T Consensus 241 ~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~---~d~~i~~W~~d 311 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSE---DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE---NDKTIKLWKSD 311 (312)
T ss_dssp CEEEECSSSCEEEECCT---TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECT---TTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEECC---CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEcc---CCccEEEecCC
Confidence 22333467889999988 99999999998887765 577889999999999999999831 18999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=323.12 Aligned_cols=387 Identities=11% Similarity=0.132 Sum_probs=296.1
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR 250 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~ 250 (712)
+.....+|+++ .+++...++.+.+|+. ..+.....+.+|...|++++|||+|++||+++.++ |.||+.. ++..+..
T Consensus 16 v~~i~~sp~~~-~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~-~~~~~~~ 92 (814)
T 3mkq_A 16 VKGIDFHPTEP-WVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVD 92 (814)
T ss_dssp EEEEEECSSSS-EEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCCEEEE
T ss_pred eEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEE
Confidence 44556667665 5677778899999998 46667778899999999999999999999999999 8899999 7777766
Q ss_pred ec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 251 YA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 251 ~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
+. |. .|.+++|+|+|++|++++.+ +.|++||+.++ .....+.+|...+. +++|+
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~v~-------------~~~~~ 149 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDD----------LTVKLWNWENNWALEQTFEGHEHFVM-------------CVAFN 149 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETT----------SEEEEEEGGGTSEEEEEEECCSSCEE-------------EEEEE
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCC----------CEEEEEECCCCceEEEEEcCCCCcEE-------------EEEEE
Confidence 64 54 49999999999999999999 99999999887 66777777776653 78999
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccccccc-cCeeeEEECC--CCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-ENVMDFSWSP--TDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp--~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|.++.+|++++ |+.|++|++.++........+. ..+..++|+| ++.+|++ ++.++ .|.+|+..+.+.+.
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg--~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT-----ASDDL--TIKIWDYQTKSCVA 222 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE-----ECTTS--EEEEEETTTTEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE-----EeCCC--EEEEEECCCCcEEE
Confidence 83456888888 9999999998776554444443 6799999999 8999998 55555 56667777766666
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCE--EEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHR--FAVI 481 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~--l~~~ 481 (712)
....+......+.|+|+|.+|++++.++. +.+|++.... ....+..|...+.+++|+|+|.. ++++
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGT---------LKIWNSSTYK---VEKTLNVGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSC---------EEEEETTTCS---EEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCc---EEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence 55555566677899999999999998877 7888876432 22456677899999999999874 4444
Q ss_pred EcCCCCCeEEEEEeecccccCc----eeEEE---------------------------------EeC--CCceeEEEEcc
Q 005140 482 HGDSPRPDISFYSMRTAQHAGR----VSKLT---------------------------------TLK--GKQANALFWSP 522 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~----~~~~~---------------------------------~~~--~~~v~~l~~sp 522 (712)
. ++ .+.+|++........ ...+. .+. ...+.+++|+|
T Consensus 291 ~-~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 366 (814)
T 3mkq_A 291 F-DN---GFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366 (814)
T ss_dssp E-TT---EEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred e-CC---CEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence 4 44 578887653211000 00111 111 11468899999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccce
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHF 602 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i 602 (712)
+|+++++++ +|.+.+|++...... +.+.+++++|+|+|++|++++. ++.+++|+. ...+...+
T Consensus 367 dg~~la~~~----~~~~~i~~~~~~~~~---~~~~i~~~~~spdg~~la~~~~-----~g~v~l~~~-----~~~~~~~v 429 (814)
T 3mkq_A 367 NGRFVTVVG----DGEYVIYTALAWRNK---AFGKCQDFVWGPDSNSYALIDE-----TGQIKYYKN-----FKEVTSWS 429 (814)
T ss_dssp TSSEEEEEE----TTEEEEEETTTTEEE---EEEECSEEEECTTSSCEEEECT-----TCCEEEEET-----TEECTTCC
T ss_pred CCCEEEEec----CCEEEEEECcccccc---CCCceEEEEEeCCCCeEEEEeC-----CCcEEEEEC-----CCCccceE
Confidence 999999987 799999998744332 3467889999999999999999 999999962 23355678
Q ss_pred eeeEEecCC---CCCCChhhHHHHH
Q 005140 603 FQFLWRPRP---PSFLTPEKEEEIA 624 (712)
Q Consensus 603 ~~~~w~p~~---~~l~s~~~d~~i~ 624 (712)
..+.|+|++ ..|++++.++.|+
T Consensus 430 ~~~~~s~dg~~~~~l~~~~~d~~v~ 454 (814)
T 3mkq_A 430 VPMHSAIDRLFSGALLGVKSDGFVY 454 (814)
T ss_dssp CCCSSCCCEEECSSSEEEEETTEEE
T ss_pred EcCCcCccceecceEEEEecCCEEE
Confidence 889999998 6888887777654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=290.85 Aligned_cols=296 Identities=14% Similarity=0.211 Sum_probs=239.3
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
..+.+..++|++. .++..+.|+++.+|+. ..+.....+.+|...|++++|+|+|++||+++.|+ |+|||.. +...+
T Consensus 109 ~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~~ 185 (410)
T 1vyh_C 109 SPVTRVIFHPVFS-VMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFECI 185 (410)
T ss_dssp SCEEEEEECSSSS-EEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCEE
T ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCcee
Confidence 3455667777665 6677888999999998 56777888999999999999999999999999999 8899998 77777
Q ss_pred eeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 249 MRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 249 ~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
..+. |. .|.+++|+|+|++|++++.| ++|++||+.++.++..+.+|...+. ++.|
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D----------~~i~~wd~~~~~~~~~~~~h~~~v~-------------~~~~ 242 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRD----------KTIKMWEVQTGYCVKTFTGHREWVR-------------MVRP 242 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTCCEEEEEECCSSCEE-------------EEEE
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCcEEEEEeCCCccEE-------------EEEE
Confidence 6663 44 49999999999999999999 9999999999999999999887663 6899
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
+| ++.+|++++ |+.|++|++.++........|...|.+++|+|++.+... ....+..
T Consensus 243 ~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-----~~~~~~~---------------- 300 (410)
T 1vyh_C 243 NQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI-----SEATGSE---------------- 300 (410)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG-----GGCCSCC----------------
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccch-----hhhcccc----------------
Confidence 99 999999999 999999999988877666677788999999998765332 0000000
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.....+.|.+|++++.++. +.+|++.... ....+.+|...|.+++|+|+|++|++++.|+
T Consensus 301 --------~~~~~~~g~~l~sgs~D~~---------i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 301 --------TKKSGKPGPFLLSGSRDKT---------IKMWDVSTGM---CLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp ---------------CCEEEEEETTSE---------EEEEETTTTE---EEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred --------ccccCCCCCEEEEEeCCCe---------EEEEECCCCc---eEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 0012446789999998877 7888876432 2345678999999999999999999999999
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|++||+.++. .+..+. ...|++++|+|++.+|++++. ||.|++|+++
T Consensus 361 ---~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~---D~~i~vW~~r 410 (410)
T 1vyh_C 361 ---TLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYVVTGSV---DQTVKVWECR 410 (410)
T ss_dssp ---EEEEECCTTSC------CCEEEECCSSCEEEEEECSSSSCEEEEET---TSEEEEEC--
T ss_pred ---eEEEEECCCCc------eEEEEcCCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEeCC
Confidence 99999997654 233443 447999999999999999998 9999999863
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=307.98 Aligned_cols=359 Identities=12% Similarity=0.175 Sum_probs=267.8
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCc---ccceEEEcCC-CcEEEEEecCc-eEEeecccC
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPL-GTYLATVHRQG-AAVWGGANT 244 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~ 244 (712)
..+....++|+++..++..+.++.+.+|+. ...+....+.+|.. .|++++|+|+ |++|++++.++ |++|++. +
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~ 238 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQG-PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-S 238 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEET-TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-T
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeC-CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-C
Confidence 345566777888778889999999999998 56667778888998 9999999999 99999999998 8899998 7
Q ss_pred cceeeee-----cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCC
Q 005140 245 FNRLMRY-----AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 245 ~~~~~~~-----~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (712)
.+.+..+ .|.. |.+++|+ ++++|++++.+ +.|++||+.+++.+..+..+..... .
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~--------~ 299 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----------ATIRVWDVTTSKCVQKWTLDKQQLG--------N 299 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----------SEEEEEETTTTEEEEEEECCTTCGG--------G
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----------CcEEEEECCCCcEEEEEcCCCCccc--------C
Confidence 7777777 5554 9999999 99999999999 9999999999999988887632110 0
Q ss_pred CCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCC--------------------------
Q 005140 319 VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPT-------------------------- 371 (712)
Q Consensus 319 ~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-------------------------- 371 (712)
. ...+.| + ++.++++++ ++.|++|++.++..+.....|...|.+++| |+
T Consensus 300 ~-~~~~~~-~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v 375 (615)
T 1pgu_A 300 Q-QVGVVA-T-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLI 375 (615)
T ss_dssp C-EEEEEE-E-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred c-eeEEEe-C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCce
Confidence 0 004566 4 677888887 999999999987776655555555666666 54
Q ss_pred -------CCeEEEEeecCCCCCCCeEEEEEecC--------------------------------Cccceeeeeeeeecc
Q 005140 372 -------DPIISLFVPELGGGNQPARVSLVQIP--------------------------------SKEELRQKNLFSVSD 412 (712)
Q Consensus 372 -------~~~la~~~~~~~~~~~~~~i~~~~~~--------------------------------~~~~~~~~~~~~~~~ 412 (712)
+..|++ ++.++.+++|..... ..+.+.... +....
T Consensus 376 ~~~~~~~~~~l~~-----~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 449 (615)
T 1pgu_A 376 VSLDNSKAQEYSS-----ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPG 449 (615)
T ss_dssp EEEECCSTTCCEE-----EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred EEEEECCCcEEEE-----EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCc
Confidence 333333 333333333322210 111111111 11222
Q ss_pred eeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 413 CKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
..+.|+ +++|+++.. ++. +.+|++...... ...+.+|...|.+++|+|+|++|++++.|+ .|+
T Consensus 450 ~~~~~~--~~~l~~~~~~d~~---------i~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~ 513 (615)
T 1pgu_A 450 SAVSLS--QNYVAVGLEEGNT---------IQVFKLSDLEVS--FDLKTPLRAKPSYISISPSETYIAAGDVMG---KIL 513 (615)
T ss_dssp EEEEEC--SSEEEEEETTTSC---------EEEEETTEEEEE--EECSSCCSSCEEEEEECTTSSEEEEEETTS---CEE
T ss_pred eEEEEc--CCEEEEeecCCCe---------EEEEECCCcccc--ccccCCccCceEEEEECCCCCEEEEcCCCC---eEE
Confidence 334444 666666665 554 778876542111 144668899999999999999999999999 999
Q ss_pred EEEeecccccCceeEEEEeCC---CceeEEEEcc----------CCCeEEEEeccCCCceEEEEECCcc-eeeee--ccc
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG---KQANALFWSP----------SGRFIVLAGLKGFNGQLEFYNVDEL-ETMAT--AEH 555 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~---~~v~~l~~sp----------dg~~l~~~~~~~~dg~v~iwd~~~~-~~~~~--~~~ 555 (712)
+|++.++. .+..+.+ ..+++++|+| +|++|++++. ||.|++||+.++ +.+.. .|.
T Consensus 514 iw~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~h~ 584 (615)
T 1pgu_A 514 LYDLQSRE------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL---DTNIFIYSVKRPMKIIKALNAHK 584 (615)
T ss_dssp EEETTTTE------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET---TSCEEEEESSCTTCCEEETTSST
T ss_pred EeeCCCCc------ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC---CCcEEEEECCCCceechhhhcCc
Confidence 99997654 4555543 3799999999 9999999998 999999999986 55554 577
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
..|++++|+|+|+ |++++. |+.|++|++.
T Consensus 585 ~~v~~l~~s~~~~-l~s~~~-----d~~v~iw~~~ 613 (615)
T 1pgu_A 585 DGVNNLLWETPST-LVSSGA-----DACIKRWNVV 613 (615)
T ss_dssp TCEEEEEEEETTE-EEEEET-----TSCEEEEEEC
T ss_pred cceEEEEEcCCCC-eEEecC-----CceEEEEeee
Confidence 8999999999999 999999 9999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=278.00 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=215.1
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccC-cceeeee--c-CC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT-FNRLMRY--A-HP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~-~~~~~~~--~-~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
....+++|...|.+++|+|+ +||+++.|+ |+||++.+. ...+..+ . |. .|.+++|+|++++|++++.|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D---- 79 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD---- 79 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT----
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC----
Confidence 44567899999999999998 999999999 889999822 2333333 2 54 49999999999999999999
Q ss_pred CcCCCccEEEEEEccC-------CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 279 PRDANRVVINIFDVRT-------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
++|+|||+.. .+.+..+.+|...+. +++|+| ++++|++++ |++|++|++...
T Consensus 80 ------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-------------~v~~sp-~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 80 ------STVSIWAKEESADRTFEMDLLAIIEGHENEVK-------------GVAWSN-DGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp ------SCEEEEEC-------CCCEEEEEEC----CEE-------------EEEECT-TSCEEEEEETTSCEEEEECCTT
T ss_pred ------CcEEEEEcccCcCccccceeEEEEcCCCCcEE-------------EEEECC-CCCEEEEEeCCCEEEEEeccCC
Confidence 9999999843 346677888877763 799999 999999999 999999999432
Q ss_pred ----eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 351 ----TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 351 ----~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
..+.....|...|.+++|+|++.+|++ ++.|+.+++|......
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s-----~s~D~~i~iW~~~~~~---------------------------- 186 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHPSEALLAS-----SSYDDTVRIWKDYDDD---------------------------- 186 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECSSSSEEEE-----EETTSCEEEEEEETTE----------------------------
T ss_pred CCCeEEEEEeccCCCceEEEEECCCCCEEEE-----EcCCCeEEEEECCCCC----------------------------
Confidence 233344456677999999999988888 7777777766432100
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC--CCEEEEEEcCCCCCeEEEEEeecccccC--
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAG-- 502 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~-- 502 (712)
......+.+|.+.|.+++|+|+ +.+|++++.|+ .|++|++..+....
T Consensus 187 --------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~---~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 187 --------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS---TVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp --------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS---CEEEEEEEEECTTSCE
T ss_pred --------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC---eEEEEEecCCCccccc
Confidence 0011335588999999999998 77899999999 99999997642111
Q ss_pred ceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce--eee---ecccc-ceeeEEECC--CCCEEE
Q 005140 503 RVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--TMA---TAEHF-MATDVEWDP--TGRYVA 571 (712)
Q Consensus 503 ~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~--~~~---~~~~~-~v~~~~~sp--dg~~l~ 571 (712)
.......+. ...|.+++|+|++ +|++++. ||.|++|+..+++ .+. ..|.. .|++++|+| +|++|+
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA---DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEET---TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeC---CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 112334443 3379999999766 7888887 9999999988663 232 24554 899999999 799999
Q ss_pred EEEccceeccccEEEEEecC
Q 005140 572 TAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~g 591 (712)
+++. |+.|+||++..
T Consensus 314 s~s~-----Dg~v~~W~~~~ 328 (330)
T 2hes_X 314 TGGD-----DGIVNFWSLEK 328 (330)
T ss_dssp EEET-----TSEEEEEEC--
T ss_pred EecC-----CCcEEEEEecc
Confidence 9999 99999999753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-32 Score=274.17 Aligned_cols=272 Identities=13% Similarity=0.160 Sum_probs=221.5
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
+...|.+++|||+|++|++++.| ++|++||+.++..++.+..|...+. +++|+| ++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~d----------g~v~lWd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~ 67 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYS----------GRVELWNYETQVEVRSIQVTETPVR-------------AGKFIA-RK 67 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEEEG-GG
T ss_pred CCCceEEEEECCCCCEEEEEcCC----------CcEEEEECCCCceeEEeeccCCcEE-------------EEEEeC-CC
Confidence 44569999999999999999999 9999999999999999998877653 689999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
++|++++ |+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.|+.+++|.+.. .
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----gs~D~~v~lWd~~~--~----------- 129 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-----GSDDLTVKLWNWEN--N----------- 129 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE-----EETTSCEEEEEGGG--T-----------
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE-----ECCCCeEEEEECCC--C-----------
Confidence 9999999 999999999999887777778888999999999999988 77787777664321 0
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCe
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPD 489 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~ 489 (712)
.. ....+.+|...|.+++|+| ++.+|++++.|+ .
T Consensus 130 -----------~~-------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~---~ 164 (304)
T 2ynn_A 130 -----------WA-------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR---T 164 (304)
T ss_dssp -----------TE-------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTS---E
T ss_pred -----------cc-------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCC---e
Confidence 00 0123457899999999999 678999999999 9
Q ss_pred EEEEEeecccccCceeEEEEeCCCceeEEEEcc--CCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC
Q 005140 490 ISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP--SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP 565 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp 565 (712)
|++||+.+.... ..+.......+..+.|+| ++.+|++++. |+.|++||+.+++++.+ .|...|++++|+|
T Consensus 165 v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 165 VKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EEEEETTCSSCS---EEEECCCTTCEEEEEECCSTTCCEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EEEEECCCCCcc---ceeccCCcCcEEEEEEEEcCCCCEEEEEcC---CCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 999999654421 112222234688889987 7889999998 99999999999887765 6778999999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEecCCC--CCCChhhHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPP--SFLTPEKEE 621 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~p~~~--~l~s~~~d~ 621 (712)
++++|++++. |+.|+||+... +++... +...+++++|+|++. ++++++.++
T Consensus 239 ~~~~l~s~s~-----Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g 294 (304)
T 2ynn_A 239 TLPIIISGSE-----DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294 (304)
T ss_dssp SSSEEEEEET-----TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred CCCEEEEEcC-----CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc
Confidence 9999999999 99999999874 444443 557899999999886 456665543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=289.68 Aligned_cols=320 Identities=8% Similarity=0.054 Sum_probs=250.5
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
..+++++|||+|++|++++.++ +++|+.. +......+.... +....|+|++++|++++.+ +.|++||
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd 125 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTI-IRDGSKMLKRADYTAVDTAKLQMRRFILGTTE----------GDIKVLD 125 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECC-SEETTTTSCSCCEEEEEEECSSSCEEEEEETT----------SCEEEEC
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEec-ccceeeEEecCCceEEEEEecCCCEEEEEECC----------CCEEEEe
Confidence 4466899999999999999998 8899998 666555554335 5566889999999999999 9999999
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECC
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP 370 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 370 (712)
+.+++.+..+.+|...+. +++|+| ++++|++++ |+.|++||+.+++.+.....|...|.+++|+|
T Consensus 126 ~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 126 SNFNLQREIDQAHVSEIT-------------KLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEEETTSSSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCcceeeecccccCccE-------------EEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 999999988888887764 799999 999999999 99999999999888777767888899999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee------------------------eeecceeEEECcCCCEEEE
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL------------------------FSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~s~~g~~l~~ 426 (712)
++++|++ ++.++.+++| ++.+.+.+..... .......+.|+|+|++|++
T Consensus 192 ~~~~l~s-----~~~d~~v~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 192 RGRNVLS-----ASLDGTIRLW--ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp TTTEEEE-----EETTSCEEEE--ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred CCCEEEE-----EcCCCcEEEe--ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 9999998 6677766655 5544443332221 1123344678999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+..++. +.+|++....... ....+|...|.+++|+|++. +|++++.|+ .|++||++++... ..
T Consensus 265 ~~~dg~---------i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~--~~ 328 (420)
T 3vl1_A 265 GHVSGV---------ITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENG---MLAQWDLRSPECP--VG 328 (420)
T ss_dssp EETTSC---------EEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCTTSC--SE
T ss_pred EcCCCe---------EEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCC---eEEEEEcCCCcCc--hh
Confidence 999877 8899886543221 22336789999999999999 999999999 9999999765421 12
Q ss_pred EEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce-----------eeeeccccceeeEEECCCCC---EEE
Q 005140 506 KLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE-----------TMATAEHFMATDVEWDPTGR---YVA 571 (712)
Q Consensus 506 ~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~v~~~~~spdg~---~l~ 571 (712)
.+.......++++. +|+|++|++++. ||.|++|++.... .....+...+.+++|+|+|+ .|+
T Consensus 329 ~~~~~~~~~v~~~~-~~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~ 404 (420)
T 3vl1_A 329 EFLINEGTPINNVY-FAAGALFVSSGF---DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404 (420)
T ss_dssp EEEESTTSCEEEEE-EETTEEEEEETT---TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred hhhccCCCCceEEE-eCCCCEEEEecC---CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence 22222345677774 567889999988 9999999987521 12235667899999999999 777
Q ss_pred EEEccceeccccEEEEEec
Q 005140 572 TAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. ++.+.+|++.
T Consensus 405 a~g~-----~g~~~~~~~~ 418 (420)
T 3vl1_A 405 EVGK-----NNFCALYNLS 418 (420)
T ss_dssp EEET-----TTEEEEEESC
T ss_pred EEcC-----CceEEEEecc
Confidence 7777 7999999975
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=275.87 Aligned_cols=296 Identities=18% Similarity=0.217 Sum_probs=226.4
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
...+.+|...|++++|||+|++||+++.++ |+||+.. +.+.+..+. |. .|.+++|+|++++|++++.+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------- 95 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD-------- 95 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC--------
Confidence 345789999999999999999999999998 8899998 777777774 44 49999999999999999999
Q ss_pred CccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C-----CeEEEEEcCCceecccc
Q 005140 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K-----NMISVYETESFTLIDKK 356 (712)
Q Consensus 283 ~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d-----~~i~iwd~~~~~~~~~~ 356 (712)
+.|++||+.+++.+..+... ..+. +++|+| ++++|++++ + +.|.+|++.........
T Consensus 96 --g~i~iwd~~~~~~~~~~~~~-~~v~-------------~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 96 --YSIKLWDVSNGQCVATWKSP-VPVK-------------RVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp --TEEEEEETTTCCEEEEEECS-SCEE-------------EEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred --CeEEEEECCCCcEEEEeecC-CCeE-------------EEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999998888733 3332 799999 999999988 6 89999998855432211
Q ss_pred cccc-cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 357 SLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 357 ~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.... ..+..+... . .......+.|+|+|++|+++..++.
T Consensus 159 ~~~~~~~~~~~~~~----------------~---------------------~~~~~~~~~~~~~~~~l~~~~~dg~--- 198 (369)
T 3zwl_B 159 TKVSEEPIHKIITH----------------E---------------------GLDAATVAGWSTKGKYIIAGHKDGK--- 198 (369)
T ss_dssp EEECSSCSEEEECC----------------T---------------------TCCCEEEEEECGGGCEEEEEETTSE---
T ss_pred cccccceeeeccCC----------------c---------------------CccceeEEEEcCCCCEEEEEcCCCE---
Confidence 0000 000000000 0 0001223456666666666666554
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCc
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQ 514 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~ 514 (712)
+.+|++...... ...+..|...|.+++|+|++++|++++.++ .|++||+.++. .+..+. ...
T Consensus 199 ------i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~------~~~~~~~~~~ 261 (369)
T 3zwl_B 199 ------ISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDT---NSFLVDVSTLQ------VLKKYETDCP 261 (369)
T ss_dssp ------EEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCC------EEEEEECSSC
T ss_pred ------EEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCc---eEEEEECCCCc------eeeeecCCCC
Confidence 566665542222 234556889999999999999999999999 99999997654 334433 457
Q ss_pred eeEEEEccCCCeEEEEeccCCCc--------------eEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccce
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNG--------------QLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg--------------~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
+..++|+|+|+++++++. ++ .+++||+.+++.+.. .|...|++++|+|+|++|++++.
T Consensus 262 ~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--- 335 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGG---QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE--- 335 (369)
T ss_dssp EEEEEECSSSSEEEEEEC---CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET---
T ss_pred ceeEEecCCCceEEEeec---CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC---
Confidence 899999999999999987 65 899999998887765 57789999999999999999999
Q ss_pred eccccEEEEEecCc
Q 005140 579 EMENGFNIWSFNGK 592 (712)
Q Consensus 579 ~~d~~v~iw~~~g~ 592 (712)
|+.|+||++...
T Consensus 336 --dg~v~iw~~~~~ 347 (369)
T 3zwl_B 336 --DGFIRLHHFEKS 347 (369)
T ss_dssp --TSEEEEEEECHH
T ss_pred --CCeEEEEECccc
Confidence 999999999743
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=275.24 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=220.8
Q ss_pred ceEEEEECCeeEEEecCCCCC-CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-C-CCeeE
Q 005140 183 DQFVIRSGTDTEVLWNDARHL-KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKL 258 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~ 258 (712)
..++.++.|+++.+|+..... .....+.+|...|.+++|+|++.++|+++.|+ |+|||+. +++.+..+. + ..+.+
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~-~~~~~~~~~~~~~~~~~ 127 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAWT 127 (321)
T ss_dssp CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCTTCCCC
T ss_pred CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC-CCCEEEEEeCCCccEEE
Confidence 467778889999999973221 23345789999999999999999999999999 8899999 777776664 3 34899
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
++|+|+|++|++++.+ +.|++|++.+++....+..+...+. +++|+| ++++|++++
T Consensus 128 ~~~spdg~~l~~g~~d----------g~v~i~~~~~~~~~~~~~~~~~~v~-------------~~~~sp-dg~~lasg~ 183 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHV----------GKVNIFGVESGKKEYSLDTRGKFIL-------------SIAYSP-DGKYLASGA 183 (321)
T ss_dssp EEECTTSSEEEEECTT----------SEEEEEETTTCSEEEEEECSSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred EEECCCCCEEEEEcCC----------CcEEEEEcCCCceeEEecCCCceEE-------------EEEECC-CCCEEEEEc
Confidence 9999999999999999 9999999999999888887766553 799999 999999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++|.. ....
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-----~s~dg~i~iwd~--~~~~----------------- 239 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT-----ASDDGYIKIYDV--QHAN----------------- 239 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE-----ECTTSCEEEEET--TTCC-----------------
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE-----EcCCCeEEEEEC--CCcc-----------------
Confidence 999999999999887777677788999999999999998 777777665532 1110
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++||+.+
T Consensus 240 -------------------------------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~---~v~iwd~~~ 279 (321)
T 3ow8_A 240 -------------------------------------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDK---SVKVWDVGT 279 (321)
T ss_dssp -------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTT
T ss_pred -------------------------------------eeEEEcCCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCC
Confidence 0123457899999999999999999999999 999999976
Q ss_pred ccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 498 AQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+. .+..+.++ .|.+++|+|+|++|++++. ||.|++||+.
T Consensus 280 ~~------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~---d~~i~vwd~p 320 (321)
T 3ow8_A 280 RT------CVHTFFDHQDQVWGVKYNGNGSKIVSVGD---DQEIHIYDCP 320 (321)
T ss_dssp TE------EEEEECCCSSCEEEEEECTTSSEEEEEET---TCCEEEEECC
T ss_pred CE------EEEEEcCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEeCC
Confidence 54 56666544 6999999999999999998 9999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=279.48 Aligned_cols=270 Identities=12% Similarity=0.165 Sum_probs=215.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.+++|+|+|++|++++.| ++|+|||+.+++.+..+..|...+. +++|+| ++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~D----------g~v~iWd~~~~~~~~~~~~~~~~v~-------------~~~~s~-~~ 109 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQD----------GKLIIWDSYTTNKVHAIPLRSSWVM-------------TCAYAP-SG 109 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----------TEEEEEETTTCCEEEEEECSSSCEE-------------EEEECT-TS
T ss_pred CCCceEEEEECCCCCEEEEEeCC----------CcEEEEECCCCCcceEeecCCccEE-------------EEEECC-CC
Confidence 34459999999999999999999 9999999999999999988877653 689999 99
Q ss_pred CEEEEec-CCeEEEEEcCCce----ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 332 KYFAKLG-KNMISVYETESFT----LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
++|++++ |+.|++|++.+.. .......|...|.++.|+|++. +++ ++.++.+++|
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s-----~s~d~~i~~w-------------- 169 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT-----SSGDTTCALW-------------- 169 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE-----EETTSCEEEE--------------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE-----EECCCcEEEE--------------
Confidence 9999999 9999999987643 2222334556677777777665 444 4455554443
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
++... .....+.+|.+.|.+++|+|++++|++++.|+
T Consensus 170 ---------------------------------------d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~- 206 (340)
T 1got_B 170 ---------------------------------------DIETG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA- 206 (340)
T ss_dssp ---------------------------------------ETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred ---------------------------------------ECCCC---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCC-
Confidence 22111 01133557899999999999999999999999
Q ss_pred CCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc----ccceee
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE----HFMATD 560 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~----~~~v~~ 560 (712)
.|++||++++. .+..+.+| .+++++|+|+|++|++++. ||.|++||+.+++.+.... ...+++
T Consensus 207 --~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 207 --SAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp --CEEEEETTTCS------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred --cEEEEECCCCe------eEEEEcCCcCCEEEEEEcCCCCEEEEEcC---CCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 99999997654 45556544 6999999999999999998 9999999999877665432 246899
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEec-Cceeee--ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR--TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~--~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
++|+|+|++|++++. |+.+++|++. +..+.. .|...|.+++|+|++..|+|++.|+.|+
T Consensus 276 ~~~s~~g~~l~~g~~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 276 VSFSKSGRLLLAGYD-----DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp EEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred EEECCCCCEEEEECC-----CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 999999999999999 9999999976 444433 3778999999999999999999887654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=274.51 Aligned_cols=312 Identities=13% Similarity=0.149 Sum_probs=241.8
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce---
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR--- 247 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~--- 247 (712)
+.....+|+|+ .+++...++..+.|..+.... .....+|...|++++|+|+|++|++++ ++ ++||+.. +...
T Consensus 12 v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~-~~~~~~~ 87 (337)
T 1gxr_A 12 AYSFHVTADGQ-MQPVPFPPDALIGPGIPRHAR-QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS-HPGNKSP 87 (337)
T ss_dssp CCEEEECSSSC-EEECCCCTTSSSSTTCCSEEE-EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT-STTCCSC
T ss_pred eeEEEECCCCC-EEEeecCCCcEeccccCCccc-cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC-CCCceee
Confidence 34556677776 333444444455665533222 333457999999999999999999999 66 8899997 4432
Q ss_pred eeee---cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCc
Q 005140 248 LMRY---AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 248 ~~~~---~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
+..+ .|. .|.+++|+|++++|++++.+ +.|++||+.+++ ....+..|...+.
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~i~------------ 145 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----------STLSIWDLAAPTPRIKAELTSSAPACY------------ 145 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESS----------SEEEEEECCCC--EEEEEEECSSSCEE------------
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCC----------CcEEEEECCCCCcceeeecccCCCceE------------
Confidence 2221 344 49999999999999999999 999999998887 5666777766543
Q ss_pred CeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 322 PVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+++|+| ++++|++++ ++.|.+|++.+++.+.....|...+.+++|+|++++|++ ++.++ .|.+|++.+.+
T Consensus 146 -~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-----~~~dg--~i~~~d~~~~~ 216 (337)
T 1gxr_A 146 -ALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT-----GGLDN--TVRSWDLREGR 216 (337)
T ss_dssp -EEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-----EETTS--EEEEEETTTTE
T ss_pred -EEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE-----EecCC--cEEEEECCCCc
Confidence 689999 999999998 999999999998877766667788999999999999998 44554 46667776665
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.+.... +......+.|+|+|++++++..++. +.+|++.... ...+..|...|.+++|+|++++|++
T Consensus 217 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~---------i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 217 QLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN---------VEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEETTSC---------EEEEETTSSC----EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eEeeec-CCCceEEEEECCCCCEEEEEcCCCc---------EEEEECCCCC----eEEEcCCccceeEEEECCCCCEEEE
Confidence 544433 3445667899999999999988776 7888876543 2456688999999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++.++ .|++|++.++. .+... ....+.+++|+|+|++|++++. ||.|++|++
T Consensus 283 ~~~dg---~i~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDN---LLNAWRTPYGA------SIFQSKESSSVLSCDISVDDKYIVTGSG---DKKATVYEV 335 (337)
T ss_dssp EETTS---EEEEEETTTCC------EEEEEECSSCEEEEEECTTSCEEEEEET---TSCEEEEEE
T ss_pred ecCCC---cEEEEECCCCe------EEEEecCCCcEEEEEECCCCCEEEEecC---CCeEEEEEE
Confidence 99999 99999997654 22222 3557999999999999999998 999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=286.58 Aligned_cols=323 Identities=10% Similarity=0.193 Sum_probs=241.7
Q ss_pred EEeecccCcceeeee-cC-CCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEc----cCCc------eeeeccC
Q 005140 237 AVWGGANTFNRLMRY-AH-PQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDV----RTGK------VMRDFKG 303 (712)
Q Consensus 237 ~iw~~~~~~~~~~~~-~~-~~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~----~~g~------~~~~~~~ 303 (712)
.+|+.. ........ .| ..|.+++|+|+|+ +||+++.+ +.|++|++ .+++ ....+..
T Consensus 28 ~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 1r5m_A 28 SSDDLD-GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKN----------SVARLARIVETDQEGKKYWKLTIIAELRH 96 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETB----------TEEEEEEEEEC------CEEEEEEEEEEC
T ss_pred ccccch-hhhhheeeeeccCceEEEEECCCCCcEEEEecCC----------ceEEEEEEecccCCccccccccccccccc
Confidence 478887 44444443 33 4599999999999 99999999 99999999 8888 4444443
Q ss_pred ----------CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 304 ----------SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 304 ----------~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
|...+. +++|+| ++++|++++ ++.|.+|+ .++..+.....|...|.+++|+|++
T Consensus 97 ~~~~~~~~~~~~~~v~-------------~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 97 PFALSASSGKTTNQVT-------------CLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp CCCCC------CBCEE-------------EEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS
T ss_pred cccccccccCCCCceE-------------EEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC
Confidence 232332 799999 999999998 99999999 5566665666677889999999999
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec---------------ceeEEECcCCCEEEEEEccccccccc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS---------------DCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
++|++ ++.++.+ .+|++.+.+.+......... ...+.|++++. ++++..++.
T Consensus 162 ~~l~~-----~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~----- 228 (425)
T 1r5m_A 162 THIIS-----MDVENVT--ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGA----- 228 (425)
T ss_dssp SEEEE-----EETTCCE--EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGC-----
T ss_pred CEEEE-----EecCCeE--EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCe-----
Confidence 99998 5566554 45666665555444433333 56678888865 666666655
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCce
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA 515 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v 515 (712)
+.+|++..... ...+.+|...|.+++|+|++++|++++.++ .|++|++.++.. +..+. ...+
T Consensus 229 ----i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~------~~~~~~~~~~i 292 (425)
T 1r5m_A 229 ----IFVYQITEKTP---TGKLIGHHGPISVLEFNDTNKLLLSASDDG---TLRIWHGGNGNS------QNCFYGHSQSI 292 (425)
T ss_dssp ----EEEEETTCSSC---SEEECCCSSCEEEEEEETTTTEEEEEETTS---CEEEECSSSBSC------SEEECCCSSCE
T ss_pred ----EEEEEcCCCce---eeeeccCCCceEEEEECCCCCEEEEEcCCC---EEEEEECCCCcc------ceEecCCCccE
Confidence 78888765422 234567899999999999999999999999 999999976542 33333 4479
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-c
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-K 592 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~ 592 (712)
.+++|+|+| ++++++. +|.|++||+.+++.+.. .|...+++++|+|+|++|++++. |+.|++|++.. .
T Consensus 293 ~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSM---DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM-----DGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEETTT-EEEEEET---TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET-----TSCEEEEECHHHH
T ss_pred EEEEECCCC-EEEEEeC---CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCc
Confidence 999999999 8888888 99999999998887765 56689999999999999999999 99999999973 3
Q ss_pred --------------------eeeee--ccc--ceeeeEEecCCCCCCChhhHHHH
Q 005140 593 --------------------LLYRT--LKD--HFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 593 --------------------~~~~~--~~~--~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.+... +.. .+.+++|+|++++|++++.++.|
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 364 SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp C--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred cceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 33333 333 89999999999999998887654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=285.47 Aligned_cols=312 Identities=13% Similarity=0.157 Sum_probs=200.9
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
-..+.+++++.|+.+.+......|++. ...+. .|...|.+++|||||++||+++.+... --++.|++|+..++
T Consensus 8 ~sg~d~g~~~~~~~~~g~~~~~~w~~p-~~~p~--~H~~~V~~v~fSpDG~~las~s~d~~~----~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 8 SSGVDLGTENLYFQSNGSSKGSAWGRP-VTAPA--CMEVQIGAVRYRRDGALLLAASSLSSR----TWGGSIWVFKDPEG 80 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSS----SCCEEEEEESSCC-
T ss_pred ccCCCCCccceEEecCCCccccccCCC-CCCcc--cccCCEEEEEECCCCCEEEEEcCCCCc----cccCeEEEEECCCC
Confidence 345778888888777666668899987 33221 233349999999999999999974110 00178999998877
Q ss_pred ceeeecc----CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccc----ccccCeeeEE
Q 005140 296 KVMRDFK----GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS----LKVENVMDFS 367 (712)
Q Consensus 296 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~ 367 (712)
.....+. .|...+. +++|+| ++.+++++.+++|+|||+.+++.+.... .|...|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~V~-------------~~~~s~-d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 81 APNESLCTAGVQTEAGVT-------------DVAWVS-EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp --CGGGCSEEEECSSCEE-------------EEEEET-TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred CcceeEecccCCCCCCEE-------------EEEEcC-CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 6544332 3333332 799999 9988887779999999998776443221 3556789999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
|+|++++|++ ++.++.+++|. ..+.+
T Consensus 147 ~spdg~~l~s-----gs~dg~v~iwd--~~~~~----------------------------------------------- 172 (357)
T 4g56_B 147 VFSDGTQAVS-----GGKDFSVKVWD--LSQKA----------------------------------------------- 172 (357)
T ss_dssp ECSSSSEEEE-----EETTSCEEEEE--TTTTE-----------------------------------------------
T ss_pred ECCCCCEEEE-----EeCCCeEEEEE--CCCCc-----------------------------------------------
Confidence 9999988888 66666665542 22111
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG 524 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg 524 (712)
....+.+|...|.+++|+|++. +|++++.|+ .|++||++++... ....+. ...+.+++|+|++
T Consensus 173 -------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg---~v~~wd~~~~~~~----~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 173 -------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG---RILLWDTRKPKPA----TRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp -------EEEEECCCSSCEEEEEECTTCSSCEEEEETTS---CEEECCTTSSSCB----CBCCCTTCCSCEEEEEECTTS
T ss_pred -------EEEEEcCCCCCEEEEEEccCCCceeeeeccCC---ceEEEECCCCcee----eeeeeccccccccchhhhhcc
Confidence 1123457899999999999885 788888899 9999999765431 111122 2368999999985
Q ss_pred -CeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCC-CEEEEEEccceeccccEEEEEecCce-eeee-c
Q 005140 525 -RFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTG-RYVATAVTSVHEMENGFNIWSFNGKL-LYRT-L 598 (712)
Q Consensus 525 -~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg-~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~-~ 598 (712)
.+|++++. |+.|++||+.+++.+.. .|...|++++|+|+| ++||+++. |+.|+|||+.... +... |
T Consensus 239 ~~~la~g~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~-----D~~i~iwd~~~~~~~~~~~H 310 (357)
T 4g56_B 239 DDTFACGDE---TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE-----DCTVAVLDADFSEVFRDLSH 310 (357)
T ss_dssp TTEEEEEES---SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET-----TSCEEEECTTSCEEEEECCC
T ss_pred cceEEEeec---ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC-----CCEEEEEECCCCcEeEECCC
Confidence 57788887 99999999998877664 567899999999998 57899999 9999999988543 3333 6
Q ss_pred ccceeeeEEec-CCCCCCChhhHHHHH
Q 005140 599 KDHFFQFLWRP-RPPSFLTPEKEEEIA 624 (712)
Q Consensus 599 ~~~i~~~~w~p-~~~~l~s~~~d~~i~ 624 (712)
.+.|++++|+| ++..|+|++.|+.|+
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 78999999999 788999999999876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-30 Score=268.17 Aligned_cols=281 Identities=16% Similarity=0.237 Sum_probs=215.9
Q ss_pred cccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecccCcc-----eeeee-cCC-CeeEEEecCCCCEEEEEcCCCC
Q 005140 206 EPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFN-----RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEP 276 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~-----~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~ 276 (712)
..+|++|...|++|+|||+ +++|||++.|+ |+||++. ... ....+ .|. .|.+++|+|+|++|++++.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~-~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-- 107 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT-RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-- 107 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEEC-CSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC-CCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc--
Confidence 3468899999999999998 68999999999 8899987 332 22333 244 59999999999999999999
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-c
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-D 354 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-~ 354 (712)
+.|++|+...+........+..... ...+++ ++.+|++++ |+.+++|++...... .
T Consensus 108 --------~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 108 --------GTLRLWDLTTGTTTRRFVGHTKDVL-------------SVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp --------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred --------ccceEEeecccceeeeecCCCCcee-------------EEEEee-cCccceeecCCCeEEEEEeCCCceEEE
Confidence 9999999988887777766655442 578899 999999998 999999998755432 2
Q ss_pred cccccccCeeeEEECCCCC--eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 355 KKSLKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
....+...+..++|++++. ++++ ++.++.+++| +..+.+
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s-----~~~d~~i~i~--d~~~~~-------------------------------- 206 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVS-----CGWDKLVKVW--NLANCK-------------------------------- 206 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEE-----EETTSCEEEE--ETTTTE--------------------------------
T ss_pred EeccccCcccceEEccCCCCcEEEE-----EcCCCEEEEE--ECCCCc--------------------------------
Confidence 2334556688888887653 3444 3344444433 221110
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 512 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 512 (712)
....+.+|.+.|.+++|+|++++|++++.|+ .|++||+.+.. .+..+..
T Consensus 207 ----------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg---~i~iwd~~~~~------~~~~~~~ 255 (340)
T 4aow_A 207 ----------------------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDG---QAMLWDLNEGK------HLYTLDG 255 (340)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTC---EEEEEETTTTE------EEEEEEC
T ss_pred ----------------------eeeEecCCCCcEEEEEECCCCCEEEEEeCCC---eEEEEEeccCc------eeeeecC
Confidence 1123457899999999999999999999999 99999997654 4555543
Q ss_pred -CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----------ccccceeeEEECCCCCEEEEEEccceec
Q 005140 513 -KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----------AEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 513 -~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
..+.+++|+|++.+++.+ . |+.|++||++++..+.. .|...|++++|+|+|++|++++.
T Consensus 256 ~~~v~~~~~~~~~~~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----- 326 (340)
T 4aow_A 256 GDIINALCFSPNRYWLCAA-T---GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT----- 326 (340)
T ss_dssp SSCEEEEEECSSSSEEEEE-E---TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET-----
T ss_pred CceEEeeecCCCCceeecc-C---CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC-----
Confidence 478999999998766554 4 89999999997665432 45678999999999999999999
Q ss_pred cccEEEEEec
Q 005140 581 ENGFNIWSFN 590 (712)
Q Consensus 581 d~~v~iw~~~ 590 (712)
|+.|+||++.
T Consensus 327 Dg~v~iW~~~ 336 (340)
T 4aow_A 327 DNLVRVWQVT 336 (340)
T ss_dssp TSCEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 9999999986
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=272.01 Aligned_cols=271 Identities=15% Similarity=0.211 Sum_probs=215.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.+++|+|++++|++++.| ++|+|||..+++....+..+...+. +++|+| +|
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~D----------g~v~vWd~~~~~~~~~~~~~~~~v~-------------~~~~sp-~g 118 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQD----------GKVIVWDSFTTNKEHAVTMPCTWVM-------------ACAYAP-SG 118 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTCCEEEEEECSSSCCC-------------EEEECT-TS
T ss_pred CCCeEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCCcceEEecCCCCEE-------------EEEECC-CC
Confidence 34459999999999999999999 9999999999998888887766553 799999 99
Q ss_pred CEEEEec-CCeEEEEEcCCce------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 332 KYFAKLG-KNMISVYETESFT------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
.+|++++ |+.+.+|++.... .......|...|.+++|+|++..|++ ++.|+.+++| ++.+.+
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-----~s~D~~v~lw--d~~~~~---- 187 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT-----ASGDGTCALW--DVESGQ---- 187 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEE-----EETTSEEEEE--ETTTCC----
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEE-----EeCCCcEEEE--eCCCCe----
Confidence 9999999 9999999986431 11122345566788888888877777 5566555543 222111
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee--CCCEEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--KGHRFAVIH 482 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~~~~ 482 (712)
....+.+|...|.+++|+| +|++|++++
T Consensus 188 --------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 188 --------------------------------------------------LLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp --------------------------------------------------EEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred --------------------------------------------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 0123447888999999988 578999999
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec----ccc
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----EHF 556 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----~~~ 556 (712)
.|+ .|++||++++. .+..+..| .|++++|+|+|.+|++++. |+.|++||+...+.+... +..
T Consensus 218 ~Dg---~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 218 CDK---KAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSD---DATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp TTS---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCCS
T ss_pred CCC---eEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCccc
Confidence 999 99999997754 45555544 7999999999999999998 999999999977665432 224
Q ss_pred ceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 557 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 557 ~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+++++|+|+|++|++++. |+.|+||++. +..+... |...|.+++|+|++++|++++.|+.|+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~-----d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYN-----DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp CEEEEEECTTSSEEEEEET-----TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred ceeEEEEeCCCCEEEEEEC-----CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence 6889999999999999999 9999999985 5555443 778999999999999999999887653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=298.01 Aligned_cols=280 Identities=14% Similarity=0.213 Sum_probs=219.5
Q ss_pred cccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCc----ceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+.+|...|++++|+|++ .+|+|++.|+ |+||++.... .....+ .|. .|.+++|||+|++|++++.|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D----- 451 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD----- 451 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----
Confidence 468999999999999875 7999999999 8899987221 122222 344 49999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc---c
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID---K 355 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~---~ 355 (712)
++|+|||+.++..++.+.+|...+. +++|+| ++++|++++ |++|++|++....... .
T Consensus 452 -----g~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 452 -----GELRLWDLAAGVSTRRFVGHTKDVL-------------SVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp -----SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred -----CcEEEEECCCCcceeEEeCCCCCEE-------------EEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 9999999999999999999988764 799999 999999999 9999999986443221 1
Q ss_pred ccccccCeeeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 356 KSLKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
...|...|.+++|+|++ ..|++ ++.++.+++|.+
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s-----~s~d~~v~vwd~--------------------------------------- 548 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVS-----ASWDKTVKVWNL--------------------------------------- 548 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEE-----EETTSCEEEEET---------------------------------------
T ss_pred CCCCCCcEEEEEEeCCCCcceEEE-----EeCCCeEEEEEC---------------------------------------
Confidence 12455668888888876 45666 556666555432
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-C
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-G 512 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~ 512 (712)
.... ....+.+|.+.|.+++|+|+|++|++++.|+ .|++||+.++. .+..+. .
T Consensus 549 --------------~~~~---~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg---~i~iwd~~~~~------~~~~~~~~ 602 (694)
T 3dm0_A 549 --------------SNCK---LRSTLAGHTGYVSTVAVSPDGSLCASGGKDG---VVLLWDLAEGK------KLYSLEAN 602 (694)
T ss_dssp --------------TTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTS---BCEEEETTTTE------EEECCBCS
T ss_pred --------------CCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCc------eEEEecCC
Confidence 1100 1123557899999999999999999999999 99999997654 455554 3
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---------------------ccceeeEEECCCCCEEE
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------------HFMATDVEWDPTGRYVA 571 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~spdg~~l~ 571 (712)
..+.+++|+|++.+|++++ ++.|++||+.++.++.... ...+++++|||+|++|+
T Consensus 603 ~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred CcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 3689999999999888776 6779999999877654321 11368899999999999
Q ss_pred EEEccceeccccEEEEEec
Q 005140 572 TAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. |+.|+||++.
T Consensus 679 sgs~-----Dg~i~iW~i~ 692 (694)
T 3dm0_A 679 SGYT-----DGVIRVWGIG 692 (694)
T ss_dssp EEET-----TSEEEEEEC-
T ss_pred EEcC-----CCeEEEEecc
Confidence 9999 9999999974
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=273.36 Aligned_cols=286 Identities=16% Similarity=0.255 Sum_probs=227.5
Q ss_pred ceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc---ccccccCeeeEEECC
Q 005140 296 KVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK---KSLKVENVMDFSWSP 370 (712)
Q Consensus 296 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~---~~~~~~~v~~~~~sp 370 (712)
.++..+.+|.. .+ | .++|+| +|++||+++ |++|+||++.++..... ...|...|.+++|+|
T Consensus 6 ~~~~~~~~h~~~~v------------~-~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp 71 (345)
T 3fm0_A 6 VLLGRVPAHPDSRC------------W-FLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71 (345)
T ss_dssp EEEEEECCSTTSCE------------E-EEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT
T ss_pred EEeeeecCCCCCcE------------E-EEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC
Confidence 35667777766 44 3 699999 999999999 99999999987654322 134677899999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
++++|++ ++.|+.++||..+......+.....+......+.|+|+|++|++++.++. +.+|++...
T Consensus 72 ~g~~l~s-----~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~---------v~iwd~~~~ 137 (345)
T 3fm0_A 72 CGNYLAS-----ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS---------VWVWEVDEE 137 (345)
T ss_dssp TSSEEEE-----EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEEECTT
T ss_pred CCCEEEE-----EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe---------EEEEECCCC
Confidence 9999999 88899988887765544444444455666778899999999999999887 899999865
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 528 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~ 528 (712)
........+.+|...|.+++|+|++++|++++.|+ .|++|++.++.. .....+.+| .|.+++|+|+|++|+
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~i~~w~~~~~~~----~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD---TVKLYREEEDDW----VCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS---CEEEEEEETTEE----EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC---cEEEEEecCCCE----EEEEEecCCCCceEEEEECCCCCEEE
Confidence 44444455778999999999999999999999999 999999976432 244556554 799999999999999
Q ss_pred EEeccCCCceEEEEECCcc---------------eeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 529 LAGLKGFNGQLEFYNVDEL---------------ETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~---------------~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. |+.|++|+.... +++.+ .|...|.+++|+|++..|++++. |+.+++|+..
T Consensus 211 s~s~---D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~i~vw~~~ 282 (345)
T 3fm0_A 211 SCSD---DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-----DDAIRVFQED 282 (345)
T ss_dssp EEET---TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-----TSCEEEEEEC
T ss_pred EEeC---CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-----CCeEEEEEeC
Confidence 9998 999999996321 11221 36678999999999999999999 9999999986
Q ss_pred Cce---------ee---eecccceeeeEEecCCC-CCCChhhHHHHH
Q 005140 591 GKL---------LY---RTLKDHFFQFLWRPRPP-SFLTPEKEEEIA 624 (712)
Q Consensus 591 g~~---------~~---~~~~~~i~~~~w~p~~~-~l~s~~~d~~i~ 624 (712)
... .. ..|...|++++|+|++. .|+|++.|+.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 421 11 23667899999999985 788999999886
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-30 Score=271.61 Aligned_cols=296 Identities=15% Similarity=0.187 Sum_probs=224.4
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
++.|...|++++|+|+|++||+++.++ |+||+.. +.. .+..+. |. .|.+++|+|++++|++++.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------- 73 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD--------- 73 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEE-TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT---------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC---------
Confidence 456889999999999999999999888 8899998 554 555553 44 49999999999999999999
Q ss_pred ccEEEEEEccCCceeeec--cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee---cc-cc
Q 005140 284 RVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL---ID-KK 356 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~---~~-~~ 356 (712)
+.|++||+.+++....+ ..|...+. +++|+| ++++|++++ ++.|++|++..+.. .. ..
T Consensus 74 -g~i~vwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 -RNAYVWTLKGRTWKPTLVILRINRAAR-------------CVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp -SCEEEEEEETTEEEEEEECCCCSSCEE-------------EEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred -CeEEEEECCCCeeeeeEEeecCCCcee-------------EEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 99999999888754443 44544442 799999 999999998 99999999987652 11 12
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..|...|.+++|+|++++|++ ++.++.+++|.............. .|...-
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~-----~~~dg~i~~~d~~~~~~~~~~~~~---------~~~~~~--------------- 189 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAA-----GSCDFKCRIFSAYIKEVEERPAPT---------PWGSKM--------------- 189 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEE-----EETTSCEEEEECCCTTTSCCCCCB---------TTBSCC---------------
T ss_pred cccCCCeeEEEEcCCCCEEEE-----EcCCCCEEEEEccccccccccccc---------cccccc---------------
Confidence 335667999999999999998 667777776654332211000000 010000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--Cc
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQ 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~ 514 (712)
........+.+|...|.+++|+|++++|++++.|+ .|++||++++. .+..+.. .+
T Consensus 190 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~------~~~~~~~~~~~ 246 (372)
T 1k8k_C 190 --------------PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS---TVCLADADKKM------AVATLASETLP 246 (372)
T ss_dssp --------------CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT---EEEEEEGGGTT------EEEEEECSSCC
T ss_pred --------------chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC---EEEEEECCCCc------eeEEEccCCCC
Confidence 00001133447889999999999999999999999 99999997655 4444443 37
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCc--ce-----------------------------------------eee
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE--LE-----------------------------------------TMA 551 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~--~~-----------------------------------------~~~ 551 (712)
+.+++|+|+|++|+++ . ++.|++|++.+ ++ .+.
T Consensus 247 v~~~~~~~~~~~l~~~-~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 247 LLAVTFITESSLVAAG-H---DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp EEEEEEEETTEEEEEE-T---TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred eEEEEEecCCCEEEEE-e---CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 8999999999988887 5 99999999987 31 222
Q ss_pred eccccceeeEEEC-CCC---CEEEEEEccceeccccEEEEEec
Q 005140 552 TAEHFMATDVEWD-PTG---RYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 552 ~~~~~~v~~~~~s-pdg---~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
..|...|++++|+ ++| .+|++++. |+.|++|++.
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~-----Dg~i~~W~~~ 360 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGM-----DGGMSIWDVR 360 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEET-----TSEEEEEEHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecC-----CCceEEEEec
Confidence 4677899999966 677 99999999 9999999986
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=277.41 Aligned_cols=290 Identities=11% Similarity=0.195 Sum_probs=223.3
Q ss_pred EeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 238 VWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 238 iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
.|+.. .......+ .|. .|.+++|+|+|++|++++.| ++|+|||+.+++.+..+..|...+.
T Consensus 50 ~~~~~-~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D----------~~v~iWd~~~~~~~~~~~~h~~~v~------ 112 (380)
T 3iz6_a 50 SFNPT-DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQD----------GRLIVWNALTSQKTHAIKLHCPWVM------ 112 (380)
T ss_dssp CCCCC-CCEEEEEECCCSSCEEEEEECTTSSCEEEEETT----------SEEEEEETTTTEEEEEEECCCTTCC------
T ss_pred ccccc-eeEEeecccccccEEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCccceEEecCCCCEE------
Confidence 45555 44444444 344 59999999999999999999 9999999999999999998877653
Q ss_pred cCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-------ecccccccccCeeeEEECCCC-CeEEEEeecCCCCC
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-------LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGN 386 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~ 386 (712)
+++|+| ++++|++++ |+.+++|++.+.. .......|...|.++.|+|++ ..|++ ++.|
T Consensus 113 -------~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s-----~s~D 179 (380)
T 3iz6_a 113 -------ECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT-----GSGD 179 (380)
T ss_dssp -------CCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE-----ECTT
T ss_pred -------EEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE-----ECCC
Confidence 689999 999999999 9999999987432 122234566678889999974 45777 7777
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
+.+++| ++.+.+.+ ..... ....+|...|
T Consensus 180 ~~i~~w--d~~~~~~~----------------------~~~~~---------------------------~~~~~h~~~v 208 (380)
T 3iz6_a 180 QTCVLW--DVTTGQRI----------------------SIFGS---------------------------EFPSGHTADV 208 (380)
T ss_dssp SCEEEE--CTTTCCEE----------------------EEECC---------------------------CSSSSCCSCE
T ss_pred CcEEEE--EcCCCcEE----------------------EEeec---------------------------ccCCCCccCe
Confidence 776654 33222111 00000 0013678899
Q ss_pred EEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 467 IAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 467 ~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.+++|+| ++++|++++.|+ .|++||++.... .+..+.+| .|++++|+|+|++|++++. ||.|++||
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~---~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~i~lwd 277 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDT---TVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRFGTGSD---DGTCRLFD 277 (380)
T ss_dssp EEEEECSSSCCEEEEEETTS---CEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEEEEECS---SSCEEEEE
T ss_pred EEEEeecCCCCEEEEEECCC---eEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeEEEEcC---CCeEEEEE
Confidence 9999987 889999999999 999999964322 34445444 7999999999999999998 99999999
Q ss_pred CCcceeeeecc---------ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee------ecccceeeeEE
Q 005140 544 VDELETMATAE---------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR------TLKDHFFQFLW 607 (712)
Q Consensus 544 ~~~~~~~~~~~---------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~------~~~~~i~~~~w 607 (712)
+.+++.+.... ...+++++|+|+|++|++++. |+.++|||.. +..+.. .|.+.|.+++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----CCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 99887765421 134889999999999999999 9999999975 444332 36678999999
Q ss_pred ecCCCCCCChhhHHHHH
Q 005140 608 RPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 608 ~p~~~~l~s~~~d~~i~ 624 (712)
+|++.+|+|++.|+.|+
T Consensus 353 s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CSSSSEEEEECTTSCEE
T ss_pred CCCCCEEEEeeCCCCEE
Confidence 99999999999998775
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=267.77 Aligned_cols=290 Identities=14% Similarity=0.225 Sum_probs=204.2
Q ss_pred CCCCCCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCC------CCCCCc----ccccCCCcccceEEEcCCCc
Q 005140 157 EWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDA------RHLKPE----PVYKRSYWTESFVQWSPLGT 226 (712)
Q Consensus 157 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~------~~~~~~----~~~~~~~~~v~~v~~Spdg~ 226 (712)
.|..|+..+......+.+..++|+|+ +++..++.++.+|+.. ....+. .....|...|++++|+|++
T Consensus 18 ~w~~~~~~~~~~~~~v~~~~fs~dG~--~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 18 EWNLPPNAPACMERQLEAARYRSDGA--LLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp -----CCSCSSCCSEEEEEEECTTSC--EEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccCCCCCCcccccCCEEEEEECCCCC--EEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 34444444444445677788889886 4555556666677621 011111 1122355679999999996
Q ss_pred EEEEEecCc-eEEeecccCcceeee-----ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee
Q 005140 227 YLATVHRQG-AAVWGGANTFNRLMR-----YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR 299 (712)
Q Consensus 227 ~lat~~~~~-i~iw~~~~~~~~~~~-----~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~ 299 (712)
+|++++.+| |+|||+. +.+.+.. ..|.+ |.+++|||+|++|++++.| ++|++||+.+++.++
T Consensus 95 ~l~~~s~dg~v~lWd~~-~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d----------~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 95 GILVASDSGAVELWELD-ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD----------ICIKVWDLAQQVVLS 163 (344)
T ss_dssp EEEEEETTSEEEEEEEC-TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTTTEEEE
T ss_pred eEEEEECCCEEEEEecc-CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCcEEE
Confidence 577888888 8899998 5543322 13554 9999999999999999999 999999999999999
Q ss_pred eccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCC-Ce
Q 005140 300 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTD-PI 374 (712)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~-~~ 374 (712)
.+.+|...+. +++|++ ++. +|++++ |++|++||+.+++.+..... +...+.+++|+|++ ++
T Consensus 164 ~~~~h~~~V~-------------~~~~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 164 SYRAHAAQVT-------------CVAASP-HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp EECCCSSCEE-------------EEEECS-SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred EEcCcCCceE-------------EEEecC-CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 9999988764 799999 885 778888 99999999998876554322 23347788888854 45
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
|++ ++.++.++|| ++.+.+
T Consensus 230 l~s-----g~~dg~v~~w--d~~~~~------------------------------------------------------ 248 (344)
T 4gqb_B 230 FVF-----GDENGTVSLV--DTKSTS------------------------------------------------------ 248 (344)
T ss_dssp EEE-----EETTSEEEEE--ESCC--------------------------------------------------------
T ss_pred eEE-----eccCCcEEEE--ECCCCc------------------------------------------------------
Confidence 555 4455544443 221111
Q ss_pred eEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCe-EEEE
Q 005140 455 EVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRF-IVLA 530 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~-l~~~ 530 (712)
....+.+|...|++++|+|+| ++|++++.|+ +|+|||+.++. . ..+.+| .|++++|||+|+. |+++
T Consensus 249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~---~i~vwd~~~~~------~-~~~~~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC---SLAVLDSSLSE------L-FRSQAHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCCEEEEETTS---CEEEECTTCCE------E-EEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCc------E-EEEcCCCCCEEEEEEeCCCCeEEEEE
Confidence 013355789999999999998 5788999999 99999986543 2 234444 7999999999975 5678
Q ss_pred eccCCCceEEEEECCcce
Q 005140 531 GLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~ 548 (712)
+. |++|++|++.+..
T Consensus 319 s~---D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 319 GW---DHQVVHHVVPTEP 333 (344)
T ss_dssp ET---TSCEEEEECCC--
T ss_pred cC---CCeEEEEECCCCC
Confidence 87 9999999998543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-30 Score=264.24 Aligned_cols=268 Identities=17% Similarity=0.280 Sum_probs=218.0
Q ss_pred CC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccC-----CceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 253 HP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRT-----GKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 253 ~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
|. .|.+++|+|++ ++|++++.| ++|++|++.+ +..++.+.+|...+. +++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D----------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~ 72 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRD----------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-------------DCT 72 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETT----------SEEEEEEEEEETTEEEEEEEEEECCSSCEE-------------EEE
T ss_pred ccceEEEEEccCCCccEEEEecCC----------ccEEEecCCCCCccccccceEEeCCcccEE-------------EEE
Confidence 44 49999999975 899999999 9999999854 345778888887764 789
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|+| ++++|++++ |++|++||+.+++.+.....|...|.+++|+|++.+|++ ++.|+.+++|.+.
T Consensus 73 ~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----~s~D~~i~vwd~~--------- 137 (319)
T 3frx_A 73 LTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS-----GSRDKTIKVWTIK--------- 137 (319)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEE-----EETTSCEEEEETT---------
T ss_pred ECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEE-----EeCCCeEEEEECC---------
Confidence 999 999999999 999999999999888777778888999999999999988 7778777765321
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC------CCEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK------GHRF 478 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~------g~~l 478 (712)
+.. ...+.+|...|.+++|+|. +..|
T Consensus 138 ----------------~~~--------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 138 ----------------GQC--------------------------------LATLLGHNDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp ----------------SCE--------------------------------EEEECCCSSCEEEEEECCC------CCEE
T ss_pred ----------------CCe--------------------------------EEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence 111 1223467888999999885 4589
Q ss_pred EEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccc
Q 005140 479 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEH 555 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~ 555 (712)
++++.|+ .|++||+.+.. ....+.+| .+++++|+|+|++|++++. ||.|++||+.+++.+.. .++
T Consensus 170 ~s~~~d~---~i~~wd~~~~~------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 170 ISAGNDK---MVKAWNLNQFQ------IEADFIGHNSNINTLTASPDGTLIASAGK---DGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp EEEETTS---CEEEEETTTTE------EEEEECCCCSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEECC
T ss_pred EEEeCCC---EEEEEECCcch------hheeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEecCC
Confidence 9999999 99999997543 44455444 7999999999999999998 99999999998887765 345
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee-e----------cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR-T----------LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~-~----------~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
..+.+++|+|+|.+|++++. +.+++|++....+.. . +...+.+++|+|++++|++++.|+.|+
T Consensus 238 ~~v~~~~~sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcC------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 78999999999999998876 569999998543321 1 235688999999999999999987664
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-30 Score=272.06 Aligned_cols=279 Identities=14% Similarity=0.232 Sum_probs=217.1
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc------eeeee-cCC-CeeEEEecCC----C---CEEEE
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN------RLMRY-AHP-QVKLIDFSPG----E---KYLVT 270 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~------~~~~~-~~~-~v~~i~~Spd----g---~~l~t 270 (712)
..+.+|...|++++|+| ++||+++.++ |+||+.. +.. .+..+ .|. .|.+++|+|+ | ++|++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 35679999999999999 7999999999 8899998 554 34444 344 4999999999 9 99999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCce-----eeeccCCC-----cccccCCCCCcCCCCcCeEEec----CCCCCE-EE
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKV-----MRDFKGSA-----DEFAVGGTGGVAGVSWPVFRWG----GGKDKY-FA 335 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s----~~dg~~-la 335 (712)
++.+ +.|++||+.+++. +..+..|. ..+. +++|+ | ++++ |+
T Consensus 87 ~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~-~~~~~l~ 142 (397)
T 1sq9_A 87 TSFS----------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-------------ALKWGASNDR-LLSHRLV 142 (397)
T ss_dssp EETT----------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-------------EEEEECCC-----CEEEE
T ss_pred EcCC----------CCEEEEEccCCcccccccceeecccccccCCCcEE-------------EEEEeeccCC-CCceEEE
Confidence 9999 9999999998887 78888773 4442 79999 9 9999 99
Q ss_pred Eec-CCeEEEEEcCC------ceecc-----cc-------cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 336 KLG-KNMISVYETES------FTLID-----KK-------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
+++ ++.|++|++.+ +..+. .. ..+...|.+++|+|++ +|++ ++.++.++ +|++
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-----~~~dg~i~--i~d~ 214 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-----GFNNGTVQ--ISEL 214 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-----ECTTSEEE--EEET
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-----EeCCCcEE--EEEC
Confidence 988 99999999987 55543 32 1245567888888888 7766 44444433 3443
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC---C---CCceEEEE
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN---K---NDKIIAFA 470 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~---h---~~~v~~~~ 470 (712)
.+.+. ...+.. | ...|.+++
T Consensus 215 ~~~~~------------------------------------------------------~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 215 STLRP------------------------------------------------------LYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTEE------------------------------------------------------EEEEECCC---CCCCCEEEEE
T ss_pred CCCce------------------------------------------------------eEEEeccccccccCCccceEE
Confidence 22110 012223 6 88999999
Q ss_pred EeeCCCEEEEEEcC---CCCCeEEEEEeecccccCceeEEEEeC---------------CCceeEEEEccCCCeEEEEec
Q 005140 471 WEPKGHRFAVIHGD---SPRPDISFYSMRTAQHAGRVSKLTTLK---------------GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 471 ~sp~g~~l~~~~~d---~~~~~v~i~d~~~~~~~~~~~~~~~~~---------------~~~v~~l~~spdg~~l~~~~~ 532 (712)
|+|++++|++++.+ + .|++||+.++. .+..+. ...+.+++|+|+|++|++++.
T Consensus 241 ~~~~~~~l~~~~~d~~~g---~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFG---CITLYETEFGE------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp ECSSTTEEEEEEEETTEE---EEEEEETTTCC------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCc---eEEEEECCCCc------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 99999999999998 7 99999997654 444443 347899999999999999998
Q ss_pred cCCCceEEEEECCcceeeeec--------c---------------ccceeeEEECCCC----------CEEEEEEcccee
Q 005140 533 KGFNGQLEFYNVDELETMATA--------E---------------HFMATDVEWDPTG----------RYVATAVTSVHE 579 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~~~~~~~--------~---------------~~~v~~~~~spdg----------~~l~t~s~~~~~ 579 (712)
||.|++||+.+++.+... | ...|++++|+|+| ++|++++.
T Consensus 312 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---- 384 (397)
T 1sq9_A 312 ---DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---- 384 (397)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET----
T ss_pred ---CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC----
Confidence 999999999988776643 3 6889999999999 79999999
Q ss_pred ccccEEEEEecC
Q 005140 580 MENGFNIWSFNG 591 (712)
Q Consensus 580 ~d~~v~iw~~~g 591 (712)
|+.|+||++.+
T Consensus 385 -dg~i~iw~~~~ 395 (397)
T 1sq9_A 385 -DRSIRWFREAG 395 (397)
T ss_dssp -TTEEEEEEEEC
T ss_pred -CCcEEEEEcCC
Confidence 99999999874
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=268.92 Aligned_cols=299 Identities=12% Similarity=0.112 Sum_probs=200.4
Q ss_pred cccceEEEcCCCcEEEEEecC--------ceEEeecccCcce-------e--eeec-CC-CeeEEEecCCCCEEEEEcCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ--------GAAVWGGANTFNR-------L--MRYA-HP-QVKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~--------~i~iw~~~~~~~~-------~--~~~~-~~-~v~~i~~Spdg~~l~t~s~d 274 (712)
.+|+|++|||||++||+|+.+ .|+||++...... . ..+. |. .|.++++ +++.++++..+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 589999999999999999753 2789988622211 1 1121 22 3666654 56677776543
Q ss_pred CCCC-CcCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCC
Q 005140 275 EPSN-PRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETES 349 (712)
Q Consensus 275 ~~~~-~~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~ 349 (712)
.... .....++++++|++.++.. +.................+ .+++||| ||+++++++ |++|+|||+.+
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYT-----KLVYISR-EGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCE-----EEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCE-----EEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence 1100 0011226799999866542 1111100000000000001 1589999 999986543 89999999999
Q ss_pred ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 350 FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
+..+... .+...|.+++|+|+|++|++ ++.+. .. +| |..++..+..
T Consensus 167 ~~~~~~~-~~~~~V~~v~fspdg~~l~s-----~s~~~-~~--~~----------------------~~~~~~~~~~--- 212 (365)
T 4h5i_A 167 LTEKFEI-ETRGEVKDLHFSTDGKVVAY-----ITGSS-LE--VI----------------------STVTGSCIAR--- 212 (365)
T ss_dssp TEEEEEE-ECSSCCCEEEECTTSSEEEE-----ECSSC-EE--EE----------------------ETTTCCEEEE---
T ss_pred CcEEEEe-CCCCceEEEEEccCCceEEe-----cccee-EE--EE----------------------EeccCcceee---
Confidence 8877554 35566999999999999998 44332 22 22 2222222111
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC-CeEEEEEeecccccCceeEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR-PDISFYSMRTAQHAGRVSKLT 508 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~-~~v~i~d~~~~~~~~~~~~~~ 508 (712)
....+|...|.+++|+|+|+++++++.++.. ..+++|++..... ......
T Consensus 213 ---------------------------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~ 263 (365)
T 4h5i_A 213 ---------------------------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSK 263 (365)
T ss_dssp ---------------------------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEE
T ss_pred ---------------------------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cceeee
Confidence 1123567889999999999999999887532 2467788765432 122233
Q ss_pred EeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEEECCCCCEEEEEEccceecccc
Q 005140 509 TLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENG 583 (712)
Q Consensus 509 ~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~ 583 (712)
.+.++ .|++++|||||++||+|+. |+.|+|||+.+++++.+ +|...|++++|||||++||+++. |++
T Consensus 264 ~~~~~~~~V~~~~~Spdg~~lasgs~---D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~-----D~t 335 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKGELAVLASN---DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA-----ANT 335 (365)
T ss_dssp EEESSCSCEEEEEECTTSCEEEEEET---TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET-----TSE
T ss_pred eecCCCCCeEeEEECCCCCceEEEcC---CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC-----CCe
Confidence 44433 6999999999999999998 99999999999988764 57799999999999999999999 999
Q ss_pred EEEEEecC
Q 005140 584 FNIWSFNG 591 (712)
Q Consensus 584 v~iw~~~g 591 (712)
|+||++..
T Consensus 336 vrvw~ip~ 343 (365)
T 4h5i_A 336 IHIIKLPL 343 (365)
T ss_dssp EEEEECCT
T ss_pred EEEEEcCC
Confidence 99999853
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=269.84 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=212.3
Q ss_pred CCCcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcceeeee---cCC-CeeEEEecC-CCCEEEEEcCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRY---AHP-QVKLIDFSP-GEKYLVTYSSHE 275 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~-~v~~i~~Sp-dg~~l~t~s~d~ 275 (712)
......+.+|...|++++|+|+| ++||+++.++ |+||+.. +......+ .|. .|.+++|+| ++++|++++.+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d- 140 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR- 140 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-
Confidence 33445678899999999999999 9999999998 8899998 56555444 244 499999999 78999999999
Q ss_pred CCCCcCCCccEEEEEEccCCceeeeccCCC---cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 276 PSNPRDANRVVINIFDVRTGKVMRDFKGSA---DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
+.|++||+.+ ..+..+..+. ..+. +++|+| ++++|++++ |+.|++||+. ++
T Consensus 141 ---------~~i~iwd~~~-~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~ 195 (383)
T 3ei3_B 141 ---------GATTLRDFSG-SVIQVFAKTDSWDYWYC-------------CVDVSV-SRQMLATGDSTGRLLLLGLD-GH 195 (383)
T ss_dssp ---------TEEEEEETTS-CEEEEEECCCCSSCCEE-------------EEEEET-TTTEEEEEETTSEEEEEETT-SC
T ss_pred ---------CEEEEEECCC-CceEEEeccCCCCCCeE-------------EEEECC-CCCEEEEECCCCCEEEEECC-CC
Confidence 9999999874 6666665543 2221 799999 999999999 9999999994 55
Q ss_pred ecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc
Q 005140 352 LIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.+.....|...|.+++|+|+++ +|++ ++.++.+++| ++.+.+ ..+..
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s-----~~~d~~i~iw--d~~~~~------------------~~~~~------- 243 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMAT-----SSVDATVKLW--DLRNIK------------------DKNSY------- 243 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEE-----EETTSEEEEE--EGGGCC------------------STTCE-------
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEE-----EeCCCEEEEE--eCCCCC------------------cccce-------
Confidence 5555556777899999999988 6776 5556555544 332110 00000
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 431 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 431 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
...+ +|...|.+++|+| ++++|++++.|+ .|++||++++.....+.....
T Consensus 244 -------------------------~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 244 -------------------------IAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN---EIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp -------------------------EEEE-ECSSCEEEEEECTTTSCEEEEEESSS---EEEEEETTBTTSCSEEEECCB
T ss_pred -------------------------EEEe-cCCCceEEEEEcCCCCCEEEEEcCCC---cEEEEECCCCccccccccccc
Confidence 0112 5688999999999 999999999999 999999987553211110000
Q ss_pred -e------------CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec----cccceeeEEECCCCCEEEE
Q 005140 510 -L------------KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----EHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 510 -~------------~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----~~~~v~~~~~spdg~~l~t 572 (712)
. +...+..++|+|+|++ +++. ||.|++||+.+++.+... +...+..++|+|+|++|++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~---d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND---KRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC---CCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCC---CCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 0 0112333556666665 4445 999999999988887653 3456667799999999999
Q ss_pred EEccceeccccEEEEEecC
Q 005140 573 AVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~g 591 (712)
+ . |+.|+||++.+
T Consensus 370 ~-s-----d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 G-M-----GFNILIWNRED 382 (383)
T ss_dssp E-E-----TTEEEEEECC-
T ss_pred e-c-----CCcEEEEecCC
Confidence 9 4 69999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=270.89 Aligned_cols=312 Identities=11% Similarity=0.135 Sum_probs=232.7
Q ss_pred ccCCCcccceEEEcCC---Cc--EEEEEecCceEEeecccCcceeeeec------C-CCeeEEEecCC----CCEEEEEc
Q 005140 209 YKRSYWTESFVQWSPL---GT--YLATVHRQGAAVWGGANTFNRLMRYA------H-PQVKLIDFSPG----EKYLVTYS 272 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spd---g~--~lat~~~~~i~iw~~~~~~~~~~~~~------~-~~v~~i~~Spd----g~~l~t~s 272 (712)
..+|...|++++|+|+ |. ++++++.+.|.||+.. +...+..+. | ..|.+++|+|+ |++|++++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC-GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcC-CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 3589999999999984 33 5555555559999998 555544442 2 34999999999 67999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
.+ +.|++||+.+++.+..+.+|...+. +++|+|.++.+|++++ |+.|++||+.+++
T Consensus 93 ~d----------g~i~v~d~~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 93 SR----------GIIRIINPITMQCIKHYVGHGNAIN-------------ELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp TT----------CEEEEECTTTCCEEEEEESCCSCEE-------------EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred CC----------CEEEEEEchhceEeeeecCCCCcEE-------------EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 99 9999999999999999998877764 7999984567888888 9999999999888
Q ss_pred ecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 352 LIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 352 ~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
.+... ..+...|.+++|+|++.+|++ ++.++.+++| ++.+.+.+..... .+.|+|++..++...
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~i~--d~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMS-----CGMDHSLKLW--RINSKRMMNAIKE------SYDYNPNKTNRPFIS 216 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSSEEEE-----EETTSCEEEE--ESCSHHHHHHHHH------HHTCCGGGCSSCCCC
T ss_pred EEEEecccccccCceeEEEECCCCCEEEE-----ecCCCCEEEE--ECCCCccccccce------eEEecCCCCcccccc
Confidence 76554 457778999999999999998 6667666554 5544432221110 223566655433322
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc--------
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH-------- 500 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~-------- 500 (712)
.... .+ ......+|...|.+++|+ +++|++++.++ .|++||+.+...
T Consensus 217 ~~~~-------------------~~-~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 217 QKIH-------------------FP-DFSTRDIHRNYVDCVRWL--GDLILSKSCEN---AIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp EEEC-------------------CC-SEEECSSCSSCCCEEEEE--TTEEEEECSSS---EEEEEEESSTTCCGGGCCTT
T ss_pred eeec-------------------cC-ccccccCCcceEEEEEEc--CCEEEEEecCC---EEEEEeCCCccccccccccC
Confidence 1110 00 112344689999999998 78999999999 999999976532
Q ss_pred cCceeEEEEeCCC--ceeEEEEccC--CCeEEEEeccCCCceEEEEECCcceeee------ecc--ccceeeEEECCCCC
Q 005140 501 AGRVSKLTTLKGK--QANALFWSPS--GRFIVLAGLKGFNGQLEFYNVDELETMA------TAE--HFMATDVEWDPTGR 568 (712)
Q Consensus 501 ~~~~~~~~~~~~~--~v~~l~~spd--g~~l~~~~~~~~dg~v~iwd~~~~~~~~------~~~--~~~v~~~~~spdg~ 568 (712)
......+..+..+ .+++++|+|+ |++|++++. ||.|++||+.+++... ..| ...|++++|+|+|+
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ---VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT---TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEec---CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence 0112345555433 6899999999 999999998 9999999999765322 233 58899999999999
Q ss_pred EEEEEEccceeccccEEEEEec
Q 005140 569 YVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 569 ~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|++++. |+.|+||++.
T Consensus 349 ~l~s~~~-----dg~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCD-----DASIWRWDRL 365 (366)
T ss_dssp EEEEEET-----TSEEEEEEC-
T ss_pred eEEEEeC-----CCEEEEEEec
Confidence 9999999 9999999974
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-31 Score=280.46 Aligned_cols=326 Identities=15% Similarity=0.225 Sum_probs=241.7
Q ss_pred chhhccCCCCCceEEEE----------ECCeeEEEecCCCCC--CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEE
Q 005140 172 LQKWLTDEKARDQFVIR----------SGTDTEVLWNDARHL--KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAV 238 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~----------~~~~~~~~w~~~~~~--~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~i 238 (712)
+....++|+++..+++. +.++.+.+|+..... ++... ..|...|++++|||+|++||+++.++ |+|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 33455667777666666 678889999984322 13333 35888999999999999999999998 889
Q ss_pred eecccC----cceeeee-cCC-CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------eeee---cc
Q 005140 239 WGGANT----FNRLMRY-AHP-QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRD---FK 302 (712)
Q Consensus 239 w~~~~~----~~~~~~~-~~~-~v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------~~~~---~~ 302 (712)
|+.. . ...+..+ .|. .|.+++|+|+ +++|++++.+ +.|++||+.+++ .... +.
T Consensus 94 w~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 94 YSTN-EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN----------GEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp ECCS-STTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS----------SCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred eecc-cccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC----------CeEEEEECCCCcccccccccccccccc
Confidence 9998 4 3344444 344 4999999998 8999999999 999999998876 3222 23
Q ss_pred CCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCceeccccccc------ccCeeeEEECCCC-C
Q 005140 303 GSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTD-P 373 (712)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~-~ 373 (712)
.|...+. +++|+| + +.+|++++ ++.|++||+.+++.+.....+ ...|.+++|+|++ .
T Consensus 163 ~~~~~v~-------------~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 163 SSVDEVI-------------SLAWNQ-SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CSSCCCC-------------EEEECS-SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred CCCCCee-------------EEEeCC-CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 4444432 799999 8 78899888 999999999988877655554 5679999999997 5
Q ss_pred eEEEEeecCCCCCC-CeEEEEEecCCc-cceeeee-eeeecceeEEECc-CCCEEEEEEcccccccccccccEEEEEEec
Q 005140 374 IISLFVPELGGGNQ-PARVSLVQIPSK-EELRQKN-LFSVSDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 374 ~la~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~-~~~~~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+|++ ++.++ ...|.+|++... ..+.... .+......+.|+| ++.+|++++.++. +.+|++..
T Consensus 229 ~l~~-----~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~---------v~~wd~~~ 294 (416)
T 2pm9_A 229 RVAT-----ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT---------VLLWNPES 294 (416)
T ss_dssp EEEE-----EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE---------EEEECSSS
T ss_pred EEEE-----EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC---------EEEeeCCC
Confidence 6666 44554 124555666554 3333333 4556677889999 9999999998877 78898765
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeE-----------EEE--------
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSK-----------LTT-------- 509 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~-----------~~~-------- 509 (712)
.. ....+.+|...|.+++|+|++ .+|++++.|+ .|++|++.+......... +..
T Consensus 295 ~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 295 AE---QLSQFPARGNWCFKTKFAPEAPDLFACASFDN---KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp CC---EEEEEECSSSCCCCEEECTTCTTEEEECCSSS---EEEEEESCCCCCSSCC----------------------CC
T ss_pred Cc---cceeecCCCCceEEEEECCCCCCEEEEEecCC---cEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 32 234566889999999999999 8999999999 999999976542211100 000
Q ss_pred ----------e--CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 510 ----------L--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 510 ----------~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
. ...++.+++|||+|++|++++. |+.|+||++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~---d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD---GKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT---SSCBCCBCCCC
T ss_pred cccccccccCCccccCCccceEEeeCCeEEEEeCC---CCeEEEEEecc
Confidence 0 1235678999999999999987 99999999875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=282.59 Aligned_cols=305 Identities=8% Similarity=-0.017 Sum_probs=206.1
Q ss_pred EEEecCc-eEEeecccCccee----eee-cC-CCeeEEEecCC------CCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 229 ATVHRQG-AAVWGGANTFNRL----MRY-AH-PQVKLIDFSPG------EKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 229 at~~~~~-i~iw~~~~~~~~~----~~~-~~-~~v~~i~~Spd------g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
|+++.|+ |+||++. +.... ..+ +| ..|.+++|+|+ +.+||+++.| ++|+|||+.++
T Consensus 177 aS~s~D~tI~iWd~~-~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D----------gtvrlWd~~~~ 245 (524)
T 2j04_B 177 DKEKHSSCIQIFKMN-TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE----------GTINFLEIIDN 245 (524)
T ss_dssp -----CEEEEEEEEE-TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT----------SCEEEEECCCC
T ss_pred ccCCCCceEEEEEcc-CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC----------CeEEEEEcCCC
Confidence 3344566 7899987 44421 222 33 45999999997 5799999999 99999999776
Q ss_pred ce-----------eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee-cccccccccC
Q 005140 296 KV-----------MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-IDKKSLKVEN 362 (712)
Q Consensus 296 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~-~~~~~~~~~~ 362 (712)
.. ...+.+|...+. +++|++ ++ +|++++ ||+|++||+.++.. ......|...
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~~v~-------------sv~~s~-~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADSLIT-------------TFDFLS-PT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTTCEE-------------EEEESS-SS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred ccccccceeecCceEEEEcCCCCEE-------------EEEecC-CC-eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 42 124555554442 799998 75 688887 99999999987643 2334567788
Q ss_pred eeeE--EECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee--ecceeEEECcCCCEEEEEEccccccccc
Q 005140 363 VMDF--SWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS--VSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 363 v~~~--~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
|.++ +|+|++ .+|++ ++.|+.++|| ++.+.+.+.....+. .....+.|+|++..+++++.+.+
T Consensus 311 V~sv~~~~s~~g~~~laS-----~S~D~tvklW--D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t----- 378 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVST-----VAVDGYFYIF--NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS----- 378 (524)
T ss_dssp EEEEEEECCTTSCCEEEE-----EETTSEEEEE--CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE-----
T ss_pred EEEEEEEcCCCCCeEEEE-----eccCCeEEEE--ECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCc-----
Confidence 9999 678888 88888 7778777665 444433322222111 12456789999999998888766
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eCCCcee
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQAN 516 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~ 516 (712)
+++|+++..... ..+.+|.+.|.+++|||+|++|++++.|+ +|++|++..+... ..+.... .....+.
T Consensus 379 ----v~lwd~~~~~~~---~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg---tv~lwd~~~~~~~-~~~~~~~~~~~~~v~ 447 (524)
T 2j04_B 379 ----LRAVPSRAAFAV---HPLVSRETTITAIGVSRLHPMVLAGSADG---SLIITNAARRLLH-GIKNSSATQKSLRLW 447 (524)
T ss_dssp ----EEEEETTCTTCC---EEEEECSSCEEEEECCSSCCBCEEEETTT---EEECCBSCSSTTT-CC------CCCCEEE
T ss_pred ----EEEEECcccccc---eeeecCCCceEEEEeCCCCCeEEEEECCC---EEEEEechHhhcc-ccccCccceeeeEEE
Confidence 789987654322 34668999999999999999999999999 9999998543211 0000000 1111467
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECC-cceeee--eccccceeeEEECCCCC---EEEEEEccceeccccEEEEEec
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVD-ELETMA--TAEHFMATDVEWDPTGR---YVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~-~~~~~~--~~~~~~v~~~~~spdg~---~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++|||+|..+... ..+.+|+.. ++.++. ..|...|++++|+|++. +||+|+. ++.|+||++.
T Consensus 448 ~v~~sp~g~~~~~~------~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~-----~g~vrlw~l~ 516 (524)
T 2j04_B 448 KWDYSIKDDKYRID------SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS-----AGLLTLEYLS 516 (524)
T ss_dssp ECBCCSSSCEEEEC------CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT-----TSEEEEEECS
T ss_pred EeccCCCCCeEEcc------CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc-----CceEEEEEcc
Confidence 89999999855331 223344332 233333 36778999999999964 8999998 9999999998
Q ss_pred Cce
Q 005140 591 GKL 593 (712)
Q Consensus 591 g~~ 593 (712)
++.
T Consensus 517 ~~~ 519 (524)
T 2j04_B 517 LEH 519 (524)
T ss_dssp CC-
T ss_pred ccc
Confidence 764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=273.96 Aligned_cols=286 Identities=14% Similarity=0.185 Sum_probs=208.7
Q ss_pred cccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcc--eeeee-cCC-CeeEEEecC-CCCEEEEEcCCCCCCCc
Q 005140 208 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHP-QVKLIDFSP-GEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~-~v~~i~~Sp-dg~~l~t~s~d~~~~~~ 280 (712)
....|...|+||+||| ++++||+|+.|| |+|||+. +.. .+..+ .|. .|.+|+|+| ++++|++++.|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------ 186 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------ 186 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------
Confidence 4456788899999999 578999999999 8899987 433 33333 355 499999998 68999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
++|+|||+.++.. ..+..+ .... ...++.|+| ++++|++++ |+.|++||+.. +.+.....
T Consensus 187 ----~~v~iwd~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~ 248 (435)
T 4e54_B 187 ----GTTRLQDFKGNIL-RVFASSDTINI-----------WFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRM 248 (435)
T ss_dssp ----SCEEEEETTSCEE-EEEECCSSCSC-----------CCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBC
T ss_pred ----CEEEEeeccCCce-eEEeccCCCCc-----------cEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEec
Confidence 9999999866543 333332 2211 011689999 999999999 99999999874 44455567
Q ss_pred cccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 359 KVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
|...|.+++|+|++. +|++ ++.|+.++||.+ ...+..
T Consensus 249 h~~~v~~v~~~p~~~~~~~s-----~s~d~~v~iwd~--~~~~~~----------------------------------- 286 (435)
T 4e54_B 249 HKKKVTHVALNPCCDWFLAT-----ASVDQTVKIWDL--RQVRGK----------------------------------- 286 (435)
T ss_dssp CSSCEEEEEECTTCSSEEEE-----EETTSBCCEEET--TTCCSS-----------------------------------
T ss_pred ccceEEeeeecCCCceEEEE-----ecCcceeeEEec--cccccc-----------------------------------
Confidence 778899999999987 4555 556776665532 211100
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---- 513 (712)
.......+|...|.+++|+|+|++|++++.|+ .|+||++.++.. ...+..+
T Consensus 287 ----------------~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~---~i~iwd~~~~~~------~~~~~~~~~~~ 341 (435)
T 4e54_B 287 ----------------ASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---EIRVYSASQWDC------PLGLIPHPHRH 341 (435)
T ss_dssp ----------------SCCSBCCBCSSCEEECCBCTTSSEEEEEESSS---CEEEEESSSSSS------EEEECCCCCCC
T ss_pred ----------------ceEEEeeeccccccceeECCCCCeeEEEcCCC---EEEEEECCCCcc------ceEEecccccc
Confidence 00011236789999999999999999999999 999999976543 1222111
Q ss_pred ----ceeEEEEccCCCeEEEEeccC---------CCceEEEEECCcceeeee---ccccceeeE-EECCCCCEEEEEEcc
Q 005140 514 ----QANALFWSPSGRFIVLAGLKG---------FNGQLEFYNVDELETMAT---AEHFMATDV-EWDPTGRYVATAVTS 576 (712)
Q Consensus 514 ----~v~~l~~spdg~~l~~~~~~~---------~dg~v~iwd~~~~~~~~~---~~~~~v~~~-~~spdg~~l~t~s~~ 576 (712)
.+....|+|++.+++++...+ .++.|++||..+++++.. .|...|.++ +|+|+|++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-- 419 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-- 419 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC--
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc--
Confidence 234567888888888775321 246799999999888765 455778777 6999999998865
Q ss_pred ceeccccEEEEEecC
Q 005140 577 VHEMENGFNIWSFNG 591 (712)
Q Consensus 577 ~~~~d~~v~iw~~~g 591 (712)
|+.|+||++..
T Consensus 420 ----d~~i~iW~~~~ 430 (435)
T 4e54_B 420 ----GYHILIWSQQE 430 (435)
T ss_dssp ----SSEEEECCCC-
T ss_pred ----CCcEEEEECCc
Confidence 57899999873
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=264.28 Aligned_cols=286 Identities=13% Similarity=0.167 Sum_probs=213.7
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCC------------------cccceEEEcCCCcEEEEEec
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSY------------------WTESFVQWSPLGTYLATVHR 233 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------------------~~v~~v~~Spdg~~lat~~~ 233 (712)
+.+..++|+|+ +++...++++.+|+. ..+.....+..|. ..|++++|||+|++||+++.
T Consensus 67 V~~v~fspdg~--~la~g~~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 67 VCCVKFSNDGE--YLATGCNKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp CCEEEECTTSS--EEEEECBSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCC--EEEEEcCCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 44556677776 445556788889998 4454444444432 24889999999999999999
Q ss_pred Cc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 234 QG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 234 ~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
++ |+|||.. +.+.+..+. |. .|.+++|+|+|++|++++.| ++|++||+.+++....+..+....
T Consensus 144 d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d----------~~v~iwd~~~~~~~~~~~~~~~v~-- 210 (393)
T 1erj_A 144 DRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD----------RTVRIWDLRTGQCSLTLSIEDGVT-- 210 (393)
T ss_dssp TSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTTEEEEEEECSSCEE--
T ss_pred CCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC----------CcEEEEECCCCeeEEEEEcCCCcE--
Confidence 99 8899999 777666653 44 49999999999999999999 999999999999887776554433
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-------cccccCeeeEEECCCCCeEEEEeecC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------SLKVENVMDFSWSPTDPIISLFVPEL 382 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~la~~~~~~ 382 (712)
+++|+|.++++|++++ |+.|++||+.++..+... ..|...|.+++|+|++.+|++
T Consensus 211 ------------~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s----- 273 (393)
T 1erj_A 211 ------------TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS----- 273 (393)
T ss_dssp ------------EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE-----
T ss_pred ------------EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE-----
Confidence 6889874678999998 999999999987765433 345667999999999999998
Q ss_pred CCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC
Q 005140 383 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 383 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
++.|+.+++|.+... ....... .+. .......+.+|
T Consensus 274 ~s~d~~v~~wd~~~~--~~~~~~~-----------~~~-------------------------------~~~~~~~~~~h 309 (393)
T 1erj_A 274 GSLDRSVKLWNLQNA--NNKSDSK-----------TPN-------------------------------SGTCEVTYIGH 309 (393)
T ss_dssp EETTSEEEEEEC-----------------------------------------------------------CEEEEEECC
T ss_pred EeCCCEEEEEECCCC--CCccccc-----------CCC-------------------------------CCcceEEEecc
Confidence 667777666654321 1000000 000 00011334578
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEcc------CCCeEEEEeccC
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP------SGRFIVLAGLKG 534 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~sp------dg~~l~~~~~~~ 534 (712)
...|.+++|+|++.+|++++.|+ .|++||+.++. .+..+.+| .|.+++|+| ++++|++++.
T Consensus 310 ~~~v~~~~~~~~~~~l~sgs~D~---~v~iwd~~~~~------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~-- 378 (393)
T 1erj_A 310 KDFVLSVATTQNDEYILSGSKDR---GVLFWDKKSGN------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG-- 378 (393)
T ss_dssp SSCEEEEEECGGGCEEEEEETTS---EEEEEETTTCC------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET--
T ss_pred cCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCe------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC--
Confidence 99999999999999999999999 99999997654 45555544 689999886 6889999998
Q ss_pred CCceEEEEECCc
Q 005140 535 FNGQLEFYNVDE 546 (712)
Q Consensus 535 ~dg~v~iwd~~~ 546 (712)
||.|+||++..
T Consensus 379 -Dg~i~iW~~~~ 389 (393)
T 1erj_A 379 -DCKARIWKYKK 389 (393)
T ss_dssp -TSEEEEEEEEE
T ss_pred -CCcEEECcccc
Confidence 99999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=263.69 Aligned_cols=270 Identities=14% Similarity=0.191 Sum_probs=209.2
Q ss_pred CCCeeEEEe-----cC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-------ceeeeccCCCcccccCCCCCcCCC
Q 005140 253 HPQVKLIDF-----SP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-------KVMRDFKGSADEFAVGGTGGVAGV 319 (712)
Q Consensus 253 ~~~v~~i~~-----Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~ 319 (712)
...|.+++| +| ++++|++++.| ++|+|||+.++ .....+.+|...+.
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D----------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~---------- 80 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRD----------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS---------- 80 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETT----------SCEEEEEECSSCCSSBSEEEEEEECCCSSCEE----------
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCC----------CEEEEEECCcCCcccccccccchhccCCCceE----------
Confidence 345999999 77 99999999999 99999998643 45677888877663
Q ss_pred CcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 320 SWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 320 ~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+++|+| ++.++++++ |++|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++|... .
T Consensus 81 ---~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s-----~~~d~~i~~wd~~--~ 149 (343)
T 2xzm_R 81 ---DLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS-----AGAEREIKLWNIL--G 149 (343)
T ss_dssp ---EEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEE-----EETTSCEEEEESS--S
T ss_pred ---EEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEE-----EcCCCEEEEEecc--C
Confidence 799999 999999999 999999999998887777778888999999999999998 7777777766431 1
Q ss_pred ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC---
Q 005140 399 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--- 475 (712)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--- 475 (712)
..... . ....+|...|.+++|+|++
T Consensus 150 -----------------------~~~~~--------------------~---------~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 150 -----------------------ECKFS--------------------S---------AEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp -----------------------CEEEE--------------------C---------CTTTSCSSCEEEEEECCCCCSC
T ss_pred -----------------------Cceee--------------------e---------ecccCCCceeeeeeeccccccc
Confidence 00000 0 0012567788888888876
Q ss_pred -------CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 476 -------HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 476 -------~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
.+|++++.|+ .|++||... . ....+. ...+++++|+|+|++|++++. ||.|++||+..
T Consensus 178 ~~~~~~~~~l~s~~~d~---~i~iwd~~~-~------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~---dg~v~iwd~~~ 244 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDG---RLKVWNTNF-Q------IRYTFKAHESNVNHLSISPNGKYIATGGK---DKKLLIWDILN 244 (343)
T ss_dssp SCCCSSCCEEEEEETTS---EEEEEETTT-E------EEEEEECCSSCEEEEEECTTSSEEEEEET---TCEEEEEESSC
T ss_pred cccCCCCCEEEEEcCCC---EEEEEcCCC-c------eeEEEcCccccceEEEECCCCCEEEEEcC---CCeEEEEECCC
Confidence 7899999999 999999421 1 333443 347999999999999999998 99999999953
Q ss_pred -ceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eee--e-------------ecccceeeeEEe
Q 005140 547 -LETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLY--R-------------TLKDHFFQFLWR 608 (712)
Q Consensus 547 -~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~--~-------------~~~~~i~~~~w~ 608 (712)
...... .+...|++++|+|++++|+++ . |+.++||++... ... . .|...+.+++|+
T Consensus 245 ~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 245 LTYPQREFDAGSTINQIAFNPKLQWVAVG-T-----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp CSSCSEEEECSSCEEEEEECSSSCEEEEE-E-----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CcccceeecCCCcEEEEEECCCCCEEEEE-C-----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 333332 245679999999999987655 4 688999998642 211 1 234578999999
Q ss_pred cCCCCCCChhhHHHHH
Q 005140 609 PRPPSFLTPEKEEEIA 624 (712)
Q Consensus 609 p~~~~l~s~~~d~~i~ 624 (712)
|+++.|++++.|+.|+
T Consensus 319 p~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIR 334 (343)
T ss_dssp SSSCCEEEEETTSEEE
T ss_pred CCCCeEEEecCCceEE
Confidence 9999999999888664
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=266.59 Aligned_cols=321 Identities=13% Similarity=0.131 Sum_probs=241.2
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY- 251 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~- 251 (712)
...++|+++- ++....++.+.+|+. ........+..| ..+....|+|+|++||+++.++ |+||+.. +......+
T Consensus 61 ~~~~s~~g~~-l~~~~~d~~v~i~d~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 136 (420)
T 3vl1_A 61 GNTFEKVGSH-LYKARLDGHDFLFNT-IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSN-FNLQREIDQ 136 (420)
T ss_dssp TCEEEEEETT-EEEEEETTEEEEEEC-CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTT-SCEEEEETT
T ss_pred ceeeeecCCe-EEEEEcCCcEEEEEe-cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCC-Ccceeeecc
Confidence 3445666653 566666889999998 444555555666 4556668999999999999999 8899999 77766665
Q ss_pred cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|. .|.+++|+|++++|++++.| +.|++||+.+++.+..+.+|...+. +++|+| +
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d----------~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~ 192 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQD----------MQLKIWSVKDGSNPRTLIGHRATVT-------------DIAIID-R 192 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTCCCCEEEECCSSCEE-------------EEEEET-T
T ss_pred cccCccEEEEECCCCCEEEEEeCC----------CeEEEEeCCCCcCceEEcCCCCcEE-------------EEEEcC-C
Confidence 455 49999999999999999999 9999999999999999998887764 799999 9
Q ss_pred CCEEEEec-CCeEEEEEcCCceeccccccc------------------------ccCeeeEEECCCCCeEEEEeecCCCC
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLK------------------------VENVMDFSWSPTDPIISLFVPELGGG 385 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~sp~~~~la~~~~~~~~~ 385 (712)
+++|++++ |+.|++||+.+++.+.....+ ...+.+++|+|++++|++ ++.
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~~~ 267 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-----GHV 267 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-----EET
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-----EcC
Confidence 99999998 999999999988766544321 244666778999999998 656
Q ss_pred CCCeEEEEEecCCccceeeee-eeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 386 NQPARVSLVQIPSKEELRQKN-LFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 386 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
++.++ +|++.+.+.+.... .+......+.|+|+|. +|++++.++. +.+|++.....+...+.. .|.
T Consensus 268 dg~i~--i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~---------i~vwd~~~~~~~~~~~~~-~~~ 335 (420)
T 3vl1_A 268 SGVIT--VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM---------LAQWDLRSPECPVGEFLI-NEG 335 (420)
T ss_dssp TSCEE--EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE---------EEEEETTCTTSCSEEEEE-STT
T ss_pred CCeEE--EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe---------EEEEEcCCCcCchhhhhc-cCC
Confidence 66654 55666555443332 2345567789999999 9999998877 899998876554433332 367
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce-----eEEEEeCCCceeEEEEccCCC---eEEEEeccCC
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV-----SKLTTLKGKQANALFWSPSGR---FIVLAGLKGF 535 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~-----~~~~~~~~~~v~~l~~spdg~---~l~~~~~~~~ 535 (712)
..|.++ ++|++++|++++.|+ .|++|++......... ..........+.+++|+|+|+ .+++++.
T Consensus 336 ~~v~~~-~~~~~~~l~s~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~--- 408 (420)
T 3vl1_A 336 TPINNV-YFAAGALFVSSGFDT---SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK--- 408 (420)
T ss_dssp SCEEEE-EEETTEEEEEETTTE---EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET---
T ss_pred CCceEE-EeCCCCEEEEecCCc---cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC---
Confidence 778777 456889999999999 9999999763221100 111122234689999999999 6666666
Q ss_pred CceEEEEECCc
Q 005140 536 NGQLEFYNVDE 546 (712)
Q Consensus 536 dg~v~iwd~~~ 546 (712)
+|.+.+|++..
T Consensus 409 ~g~~~~~~~~~ 419 (420)
T 3vl1_A 409 NNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEESCC
T ss_pred CceEEEEeccC
Confidence 89999999863
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=259.78 Aligned_cols=294 Identities=13% Similarity=0.197 Sum_probs=220.0
Q ss_pred cccCCCcccceEEEcCCCcEE-EEEec---Cc-eEEeecccCcce--eeeecCC-CeeEEEecCC---CCEEEEEcCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYL-ATVHR---QG-AAVWGGANTFNR--LMRYAHP-QVKLIDFSPG---EKYLVTYSSHEP 276 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~l-at~~~---~~-i~iw~~~~~~~~--~~~~~~~-~v~~i~~Spd---g~~l~t~s~d~~ 276 (712)
.+++|...|++++|+|+|..| ++++. ++ |+||+.. +... ...+.|. .|.+++|+|+ |++|++++.+
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-- 89 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG-- 89 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT--
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC--
Confidence 457799999999999999655 55654 67 8899998 5544 3333454 5999999999 7999999999
Q ss_pred CCCcCCCccEEEEEEccCCc-eeeeccCCCcccccCCCCCcCCCCcCeE------EecCCCCCEEEEec-CCeEEEEEcC
Q 005140 277 SNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVF------RWGGGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~s~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.|++||+.+++ .+..+.+|...+. ++ +|+| ++++|++++ |+.|++|++.
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKGHKEIIN-------------AIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECCCSSCEE-------------EEEEESGGGCC--CCCEEEEEETTSCEEEECTT
T ss_pred --------CeEEEEeCCCCCccEEEEEecccceE-------------EEeeccccccCC-CccEEEEEeCCCeEEEEeCC
Confidence 999999999888 8888888877652 45 5689 999999999 9999999999
Q ss_pred Cce-ecccccccc----cCeeeEE----ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 349 SFT-LIDKKSLKV----ENVMDFS----WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 349 ~~~-~~~~~~~~~----~~v~~~~----~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
++. .+.....+. ..+.+++ |+|++.+|++ ++.++ .|.+|++.+.+.... ..+......+.|+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-----~~~d~--~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA-----GYDNG--DIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE-----EETTS--EEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE-----EccCC--eEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 776 443332222 2578887 7899999998 55555 455667666554332 23445667789999
Q ss_pred ---CCCEEEEEEcccccccccccccEEEEEEecCCcc--eeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEE
Q 005140 420 ---SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP--IEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFY 493 (712)
Q Consensus 420 ---~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~ 493 (712)
++.+|++++.++. +.+|++...... .....+.+|...|.+++|+|++. +|++++.|+ .|++|
T Consensus 220 ~~~~~~~l~~~~~dg~---------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw 287 (357)
T 3i2n_A 220 KDISMNKLVATSLEGK---------FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG---GLHLW 287 (357)
T ss_dssp SSSSCCEEEEEESTTE---------EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS---EEEEE
T ss_pred CCCCCCEEEEECCCCe---------EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC---cEEEe
Confidence 9999999988876 889998763222 12224458999999999999998 899999999 99999
Q ss_pred EeecccccC-------------ceeEEEEeCCC--ceeEEEEccCCCeEE-EEeccCCCceEEEEECCccee
Q 005140 494 SMRTAQHAG-------------RVSKLTTLKGK--QANALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 494 d~~~~~~~~-------------~~~~~~~~~~~--~v~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+++.+.... ....+..+..+ .+++++|+|+|++|+ +++. ||.|++||+.+.+.
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~---d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF---DQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECC---
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC---CCcEEEEECCCccc
Confidence 998643211 12345555544 799999999999998 6887 99999999986654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=271.34 Aligned_cols=298 Identities=14% Similarity=0.175 Sum_probs=209.4
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCc--ceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF--NRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~--~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
++.+...|++++|||+|++||+++.++ |+||+.. +. ..+..+. |. .|.+++|+|+|++|++++.|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d--------- 76 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD--------- 76 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE-TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT---------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc-CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC---------
Confidence 344667899999999999999999998 8899998 55 5555553 44 49999999999999999999
Q ss_pred ccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee---cccc
Q 005140 284 RVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL---IDKK 356 (712)
Q Consensus 284 ~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~---~~~~ 356 (712)
+.|++||+.++. ....+..|...+. +++|+| ++++|++++ |+.|++|++.++.. ....
T Consensus 77 -~~v~vwd~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 77 -RNAYVYEKRPDGTWKQTLVLLRLNRAAT-------------FVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp -SSEEEC------CCCCEEECCCCSSCEE-------------EEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred -CeEEEEEcCCCCceeeeeEecccCCceE-------------EEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence 999999998887 5667777776653 799999 999999998 99999999997762 3333
Q ss_pred cc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 357 SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 357 ~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.. |...|.+++|+|++++|++ ++.++.+++|............ ..+.+..+-.
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~~--------- 195 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAA-----GCADRKAYVLSAYVRDVDAKPE------------ASVWGSRLPF--------- 195 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEE-----EESSSCEEEEEECCSSCC-CCC------------SCSSCSCCCE---------
T ss_pred ecccCCCeEEEEEcCCCCEEEE-----EeCCCEEEEEEEEecccCCCcc------------ccccccccch---------
Confidence 34 6778999999999999998 7788887777664322110000 0011110000
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CC
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GK 513 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~ 513 (712)
......+ +|...|.+++|+|+|++|++++.|+ .|++||+.++... ...+..+. ..
T Consensus 196 -----------------~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~--~~~~~~~~~~~~ 252 (377)
T 3dwl_C 196 -----------------NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS---SVTIAYPSAPEQP--PRALITVKLSQL 252 (377)
T ss_dssp -----------------EEEEECC-CCSSSEEEEEECTTSSCEEEEETTT---EEC-CEECSTTSC--EEECCCEECSSS
T ss_pred -----------------hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC---cEEEEECCCCCCc--ceeeEeecCCCC
Confidence 0011223 7889999999999999999999999 9999999876531 11133333 34
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcce---------------------------------------------
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--------------------------------------------- 548 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~--------------------------------------------- 548 (712)
.+.+++|+|+|++|++++. ++ +.+|+.....
T Consensus 253 ~v~~~~~s~~~~~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGYN---YS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMD 328 (377)
T ss_dssp CEEEEEEEETTEEEEEESS---SS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------
T ss_pred ceEEEEEcCCCCEEEEEcC---Cc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchh
Confidence 6899999999999998874 44 4477654111
Q ss_pred ---------eeeeccccceeeEEECCCC-C---EEEEEEccceeccccEEEEEe
Q 005140 549 ---------TMATAEHFMATDVEWDPTG-R---YVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 549 ---------~~~~~~~~~v~~~~~spdg-~---~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+...|...|+++++.+.+ . .|++++. |+.|+||++
T Consensus 329 ~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~-----Dg~i~iWdl 377 (377)
T 3dwl_C 329 LKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT-----DGRVVLWTL 377 (377)
T ss_dssp --------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET-----TSEEEEECC
T ss_pred hccccccccccCccccceeEEEeccCCCCCceEEEEeecC-----CCcEEEecC
Confidence 0001277889999976543 3 6999999 999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=256.17 Aligned_cols=268 Identities=16% Similarity=0.288 Sum_probs=214.8
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
..|.+++|+|+|++|++++.| +.|++|++.+++....+.+|...+. +++|+| ++++
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~d----------g~i~iw~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~ 79 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSAD----------KLIKIWGAYDGKFEKTISGHKLGIS-------------DVAWSS-DSNL 79 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETT----------SCEEEEETTTCCEEEEECCCSSCEE-------------EEEECT-TSSE
T ss_pred CcEEEEEECCCCCEEEEeeCC----------CeEEEEeCCCcccchhhccCCCceE-------------EEEEcC-CCCE
Confidence 459999999999999999999 9999999999999999998877663 799999 9999
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|++++ |+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++| ++.+.+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-----~~~d~~i~iw--d~~~~~------------ 140 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-----GSFDESVRIW--DVKTGK------------ 140 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE-----EETTSCEEEE--ETTTCC------------
T ss_pred EEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE-----EeCCCcEEEE--ECCCCE------------
Confidence 99998 999999999988877766677778999999999998888 6666665544 322111
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
....+..|..+|.+++|+|++++|++++.|+ .|++
T Consensus 141 ------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~ 175 (312)
T 4ery_A 141 ------------------------------------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRI 175 (312)
T ss_dssp ------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEE
T ss_pred ------------------------------------------EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC---cEEE
Confidence 0122446788999999999999999999999 9999
Q ss_pred EEeecccccCceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccc---eeeEEEC
Q 005140 493 YSMRTAQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM---ATDVEWD 564 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~---v~~~~~s 564 (712)
||+.++. .+..+. ...+..++|+|+|++|++++. ||.|++||+.+++.+.. .|... +......
T Consensus 176 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 176 WDTASGQ------CLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp EETTTCC------EEEEECCSSCCCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred EECCCCc------eeeEEeccCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 9997654 333332 336899999999999999998 99999999998887664 23322 2223344
Q ss_pred CCCCEEEEEEccceeccccEEEEEecCc-eeeee--cccceeeeEEecCCCCCCChh--hHHHH
Q 005140 565 PTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT--LKDHFFQFLWRPRPPSFLTPE--KEEEI 623 (712)
Q Consensus 565 pdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~--~~~~i~~~~w~p~~~~l~s~~--~d~~i 623 (712)
+++.+|++++. |+.|++|++... .+... |.+.+..++|+|++..+++++ .|+.|
T Consensus 247 ~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 247 TGGKWIVSGSE-----DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305 (312)
T ss_dssp SSSCEEEECCT-----TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred CCCcEEEEECC-----CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccE
Confidence 78899999999 999999998744 44333 668899999999999999875 45544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=264.76 Aligned_cols=324 Identities=12% Similarity=0.149 Sum_probs=247.1
Q ss_pred EecCCCCCCCcccccCCCccc-ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEE
Q 005140 196 LWNDARHLKPEPVYKRSYWTE-SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTY 271 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v-~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~ 271 (712)
.|..+........+.+|...+ +++++ ++.+|++++.++ |++||.. +++.+..+. |. .|.+++|+|++ +|+++
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~ 179 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG-ILVSG 179 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECSTT-EEEEE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECC-CCcEEEEEeCCCcCEEEEEEcCCC-EEEEE
Confidence 454433334455778888775 55555 678999999999 8899999 777777764 44 49999999998 99999
Q ss_pred cCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec--CCCCCEEEEec-CCeEEEEEcC
Q 005140 272 SSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG--GGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 272 s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.| ++|++||+.+++.+..+.+|...+. +++|+ + ++.+|++++ |+.|++|++.
T Consensus 180 s~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~~~-~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 180 STD----------RTVRVWDIKKGCCTHVFEGHNSTVR-------------CLDIVEYK-NIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp ETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEEEESS-SCEEEEEEETTSCEEEEECC
T ss_pred eCC----------CCEEEEECCCCcEEEEECCCCCccE-------------EEEEecCC-CCCEEEEEcCCCcEEEeeCC
Confidence 999 9999999999999999998877763 57777 6 788999999 9999999998
Q ss_pred Cceecc-----------------------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 349 SFTLID-----------------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 349 ~~~~~~-----------------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++.... ....|...+.++ +|++.+|++ ++.++.+ .+|++.+.+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-----~~~d~~i--~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVS-----GSYDNTL--IVWDVAQMKCLYIL 306 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEE-----EETTSCE--EEEETTTTEEEEEE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEE-----EeCCCeE--EEEECCCCcEEEEe
Confidence 765332 122233345544 678899998 6666654 45666666666665
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
..+......+.|+|+|.++++++.++. +.+|++... .....+.+|...|.+++|+ +++|++++.|+
T Consensus 307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~---------i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHERKRCISASMDTT---------IRIWDLENG---ELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSC---------EEEEETTTT---EEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCc---------EEEEECCCC---cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 556666778899999999999999887 889987643 2335677899999999997 68999999999
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEE
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 562 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~ 562 (712)
.|++||+.+... .........+..++|+|+|+++++++ +|.|++||+.+++.+.. .+...|.+++
T Consensus 373 ---~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~----dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~ 440 (464)
T 3v7d_B 373 ---SIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVN 440 (464)
T ss_dssp ---EEEEEETTTCCE-----EEEEECTTCCCEEEEEECSSEEEEEE----TTEEEEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred ---cEEEEECCCCce-----eeeecCCCCccEEEEEeCCCEEEEec----CCeEEEEECCCCcEEehhhccCCCcEEEEE
Confidence 999999976542 22222355678899999999999887 79999999999988864 5668899999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEE
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
|+ ++.+++++.. ++.+.+|-
T Consensus 441 ~~--~~~l~~~~~~----~g~~~i~~ 460 (464)
T 3v7d_B 441 FK--GKTLVAAVEK----DGQSFLEI 460 (464)
T ss_dssp EE--TTEEEEEEEE----TTEEEEEE
T ss_pred ec--CCEEEEEEEe----CCeEEEEE
Confidence 97 5555555542 55555543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=262.37 Aligned_cols=278 Identities=15% Similarity=0.247 Sum_probs=215.0
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeeee--c-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY--A-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~--~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
..++.|+||+++ +||+|....|+|||.. +++.+..+ + |. .|++|+|||+|++||+|+.| +.|+|
T Consensus 106 ~y~~~l~wS~~n-~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D----------g~v~i 173 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS----------AEVQL 173 (420)
T ss_dssp TTCBCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT----------SCEEE
T ss_pred ccceeEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC----------CeEEE
Confidence 457889999865 8888876559999999 77655544 2 33 39999999999999999999 99999
Q ss_pred EEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeEE
Q 005140 290 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFS 367 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~ 367 (712)
||+.+++.++.+.+|...+ .+++. ++.+|++++ ++.+.+|+..... .+.....|...+..+.
T Consensus 174 Wd~~~~~~~~~~~~h~~~v---------------~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 174 WDVQQQKRLRNMTSHSARV---------------GSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EETTTTEEEEEECCCSSCE---------------EEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEcCCCcEEEEEeCCCCce---------------EEEee-CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 9999999999999987765 34555 678999998 9999999987543 3334456777788999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
|+|++.++++ ++.++.+++|........
T Consensus 238 ~~~~g~~l~s-----~~~D~~v~i~~~~~~~~~----------------------------------------------- 265 (420)
T 4gga_A 238 WAPDGRHLAS-----GGNDNLVNVWPSAPGEGG----------------------------------------------- 265 (420)
T ss_dssp ECTTSSEEEE-----EETTSCEEEEESSCCSSC-----------------------------------------------
T ss_pred ecCCCCeeee-----eeccccceEEeecccccc-----------------------------------------------
Confidence 9999998888 666666665543211100
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEE--cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIH--GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPS 523 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~--~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spd 523 (712)
.........|...|.+++|+|.+. .+++++ .|+ .|+|||+.++. .+..+. ...+.++.|+|+
T Consensus 266 -----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~---~I~iwd~~t~~------~~~~~~~~~~v~~~~~~~~ 331 (420)
T 4gga_A 266 -----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCSGA------CLSAVDAHSQVCSILWSPH 331 (420)
T ss_dssp -----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC---EEEEEETTTTE------EEEEEECSSCEEEEEEETT
T ss_pred -----ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC---EEEEEeCCccc------cceeeccccceeeeeecCC
Confidence 000022336788999999999765 445544 366 99999997755 444444 447899999999
Q ss_pred CCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++.+++++.. .|+.|+|||+.+++++.. +|...|++++|+|||++|++++. |++|+||++..
T Consensus 332 ~~~lv~~sg~-~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~-----D~tvriWdv~~ 395 (420)
T 4gga_A 332 YKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-----DETLRLWRCFE 395 (420)
T ss_dssp TTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-----TTEEEEECCSC
T ss_pred CCeEEEEEec-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----CCeEEEEECCC
Confidence 9999987622 289999999999988875 67899999999999999999999 99999999763
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=265.46 Aligned_cols=350 Identities=11% Similarity=0.085 Sum_probs=226.7
Q ss_pred eEEEecCCCCCCCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeeeec--------------CC-C
Q 005140 193 TEVLWNDARHLKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYA--------------HP-Q 255 (712)
Q Consensus 193 ~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~--------------~~-~ 255 (712)
.+.+|+. ........+.+|...|++++|+| +|++||+++.++ |+||+.. +......+. |. .
T Consensus 24 ~~~v~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 24 TRRVLGL-ELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHTE-EECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cceeecc-ccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCc
Confidence 3446666 34556667788999999999999 999999999999 8899998 554433331 44 4
Q ss_pred eeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--
Q 005140 256 VKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-- 332 (712)
Q Consensus 256 v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-- 332 (712)
|.+++|+| ++.+|++++.+ +.|++||+.+++.+..+....... .+.|++ .+.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~ 156 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFD----------KTLKVWDTNTLQTADVFNFEETVY--------------SHHMSP-VSTKH 156 (408)
T ss_dssp EEEEEECTTCTTCEEEEETT----------SEEEEEETTTTEEEEEEECSSCEE--------------EEEECS-SCSSC
T ss_pred EEEEEEccCCCcEEEEEeCC----------CeEEEeeCCCCccceeccCCCcee--------------eeEeec-CCCCC
Confidence 99999999 78899999999 999999999999888876543332 577777 554
Q ss_pred -EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeee
Q 005140 333 -YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLF 408 (712)
Q Consensus 333 -~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 408 (712)
++++++ ++.|.+|++.++..+.....|...|.+++|+|++.. |++ ++.++.+++| ++.... .+....
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~-----~~~dg~i~i~--d~~~~~~~~~~~~-- 227 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT-----ASADSRVKLW--DVRRASGCLITLD-- 227 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE-----EETTSCEEEE--ETTCSSCCSEECC--
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE-----EcCCCcEEEE--ECCCCCccccccc--
Confidence 888888 999999999988877777678888999999999985 666 5566665554 443322 110000
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
...+.. .........+|...|.+++|+|++++|++++.|+
T Consensus 228 ---------~~~~~~----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 267 (408)
T 4a11_B 228 ---------QHNGKK----------------------------SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN--- 267 (408)
T ss_dssp ---------TTTTCS----------------------------CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred ---------cccccc----------------------------ceeeccccccccCceeEEEEcCCCCEEEEecCCC---
Confidence 000000 0000011236789999999999999999999999
Q ss_pred eEEEEEeecccccCceeEEE-EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC
Q 005140 489 DISFYSMRTAQHAGRVSKLT-TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP 565 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp 565 (712)
.|++|++.++.......... ...............+..+++++. ++.|++||+.+++.+.. .|...|++++|+|
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 99999997654310000000 000111222222334455666666 89999999999888775 5678999999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCC-CCCChhhHHHHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPP-SFLTPEKEEEIAKN 626 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~-~l~s~~~d~~i~~~ 626 (712)
+|++|++++. |+.+++|++.................+.|... .+.+.+.++.++-|
T Consensus 345 ~~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 345 NFQELYSGSR-----DCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp TTTEEEEEET-----TSCEEEEEECC------------------------------------
T ss_pred CCCEEEEECC-----CCeEEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeec
Confidence 9999999999 99999999985433222111112233334322 33344555555533
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=259.06 Aligned_cols=283 Identities=12% Similarity=0.171 Sum_probs=221.5
Q ss_pred CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|. .|.+++|+|+|++|++++.+ +.|++||+.+++.+..+.+|...+. +++|+| ++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~ 86 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKD----------SSASVWYSLNGERLGTLDGHTGTIW-------------SIDVDC-FT 86 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESS----------SCEEEEETTTCCEEEEECCCSSCEE-------------EEEECT-TS
T ss_pred eeceEEEEEEcCCCCEEEEEeCC----------CEEEEEeCCCchhhhhhhhcCCcEE-------------EEEEcC-CC
Confidence 44 49999999999999999999 9999999999999999998887764 799999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC---CCeEEEEEecCCccceeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN---QPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~ 407 (712)
++|++++ |+.|++|++.+++.+.... +...+.+++|+|++++|++ ++.+ ....|.+|++..........
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-----~~~~~~~~~g~i~~~d~~~~~~~~~~~- 159 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLA-----ILDNVMKNPGSINIYEIERDSATHELT- 159 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEE-----EECCBTTBCCEEEEEEEEECTTTCCEE-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEE-----ecCCccCCCCEEEEEEecCCccceeec-
Confidence 9999998 9999999999888776554 5667999999999999998 3343 11334444432221111000
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~ 485 (712)
... ..+. ..+..|.. .+.+++|+|++++|++++.++
T Consensus 160 ------------------~~~----------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 197 (369)
T 3zwl_B 160 ------------------KVS----------------------EEPI--HKIITHEGLDAATVAGWSTKGKYIIAGHKDG 197 (369)
T ss_dssp ------------------EEC----------------------SSCS--EEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred ------------------ccc----------------------ccee--eeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence 000 0000 11223444 899999999999999999999
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEE
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVE 562 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~ 562 (712)
.|++||+.+... .+..+. ...+.+++|+|+|++|++++. ||.|++||+.+++.+.. .+...+..++
T Consensus 198 ---~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 198 ---KISKYDVSNNYE-----YVDSIDLHEKSISDMQFSPDLTYFITSSR---DTNSFLVDVSTLQVLKKYETDCPLNTAV 266 (369)
T ss_dssp ---EEEEEETTTTTE-----EEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ---EEEEEECCCCcE-----eEEEEecCCCceeEEEECCCCCEEEEecC---CceEEEEECCCCceeeeecCCCCceeEE
Confidence 999999976321 444444 447999999999999999998 99999999998887765 4557899999
Q ss_pred ECCCCCEEEEEEccceeccc--------------cEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 563 WDPTGRYVATAVTSVHEMEN--------------GFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~--------------~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
|+|+|+++++++. ++ .+++|++. +..+... |...|.+++|+|++++|++++.|+.|+
T Consensus 267 ~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 267 ITPLKEFIILGGG-----QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp ECSSSSEEEEEEC-----CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ecCCCceEEEeec-----CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 9999999999998 55 79999986 4444333 668999999999999999999998775
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-28 Score=261.01 Aligned_cols=322 Identities=13% Similarity=0.171 Sum_probs=252.8
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEc
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s 272 (712)
.|.. ........+.+|...+.. +++++|++||+++.++ |++|+.. +++.+..+. |. .|.+++|+ +.+|++++
T Consensus 102 ~w~~-~~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~ 176 (445)
T 2ovr_B 102 NWRR-GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMR--DNIIISGS 176 (445)
T ss_dssp HHHH-SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEE--TTEEEEEE
T ss_pred cccC-CCcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEec--CCEEEEEe
Confidence 3544 234455678889876532 3666799999999999 8899999 777776663 44 49999997 67999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
.| +.|++||+.+++.+..+.+|...+. ++.|+ ++++++++ |+.|++||+.+++
T Consensus 177 ~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~---~~~l~s~s~dg~i~~wd~~~~~ 230 (445)
T 2ovr_B 177 TD----------RTLKVWNAETGECIHTLYGHTSTVR-------------CMHLH---EKRVVSGSRDATLRVWDIETGQ 230 (445)
T ss_dssp TT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEEE---TTEEEEEETTSEEEEEESSSCC
T ss_pred CC----------CeEEEEECCcCcEEEEECCCCCcEE-------------EEEec---CCEEEEEeCCCEEEEEECCCCc
Confidence 99 9999999999999999998887663 56664 46788888 9999999999988
Q ss_pred ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 352 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
.+.....|...|.+++| ++.+|++ ++.++.+++ |+..+.+.+.....+......+.| ++.++++++.++
T Consensus 231 ~~~~~~~~~~~v~~~~~--~~~~l~~-----~~~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 231 CLHVLMGHVAAVRCVQY--DGRRVVS-----GAYDFMVKV--WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EEEEEECCSSCEEEEEE--CSSCEEE-----EETTSCEEE--EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EEEEEcCCcccEEEEEE--CCCEEEE-----EcCCCEEEE--EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 87777778888999999 6788888 666666555 556555555555445555566666 889999999887
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
. +.+|++.... ....+.+|...+.++++ ++++|++++.|+ .|++||+.++. .+..+.
T Consensus 300 ~---------i~i~d~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~vwd~~~~~------~~~~~~ 356 (445)
T 2ovr_B 300 S---------IRVWDVETGN---CIHTLTGHQSLTSGMEL--KDNILVSGNADS---TVKIWDIKTGQ------CLQTLQ 356 (445)
T ss_dssp C---------EEEEETTTCC---EEEEECCCCSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCC------EEEEEC
T ss_pred e---------EEEEECCCCC---EEEEEcCCcccEEEEEE--eCCEEEEEeCCC---eEEEEECCCCc------EEEEEc
Confidence 7 8899886543 22456688888888776 578999999999 99999997654 455554
Q ss_pred C-----CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-------ccccceeeEEECCCCCEEEEEEcccee
Q 005140 512 G-----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------AEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 512 ~-----~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-------~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
. ..+.+++|+ +++|++++. ||.|++||+.+++.+.. .+...|++++|+|+|.+|++++.
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~---- 427 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSD---DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR---- 427 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS----
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeC---CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc----
Confidence 2 368888885 689999998 99999999998887654 34578999999999999999999
Q ss_pred cccc----EEEEEecCc
Q 005140 580 MENG----FNIWSFNGK 592 (712)
Q Consensus 580 ~d~~----v~iw~~~g~ 592 (712)
|+. +.|||+...
T Consensus 428 -dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 428 -NGTEETKLLVLDFDVD 443 (445)
T ss_dssp -SSSSCCEEEEEECCCC
T ss_pred -CCCCccEEEEEECCCC
Confidence 887 999998753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=255.29 Aligned_cols=271 Identities=12% Similarity=0.155 Sum_probs=198.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeec-cC-CCcccccCCCCCcCCCCcCeEEecCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDF-KG-SADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
..|.+++|+|+ +||+++.| ++|++||+.++ ..+..+ .+ |...+. +++|+|
T Consensus 15 ~~v~~~~~s~~--~las~~~D----------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-------------~v~~sp- 68 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTD----------RKIKLVSVKYDDFTLIDVLDETAHKKAIR-------------SVAWRP- 68 (330)
T ss_dssp SCEEEEEEETT--EEEEEESS----------SCEEEEECSSSCCEEEEEECTTCCCSCEE-------------EEEECT-
T ss_pred CceeeeccCCC--EEEEEcCC----------CEEEEEEecCCCeEEEEEEecCCccCCEE-------------EEEECC-
Confidence 35999999998 99999999 99999999775 344555 33 655553 799999
Q ss_pred CCCEEEEec-CCeEEEEEcCCc-------eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 330 KDKYFAKLG-KNMISVYETESF-------TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
++++|++++ |++|+||++... ..+.....|...|.+++|+|++++|++ ++.|+.+++|...
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las-----~s~D~~v~iwd~~------ 137 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT-----CSRDKSVWIWETD------ 137 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEE-----EETTSCEEEEECC------
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEE-----EeCCCEEEEEecc------
Confidence 999999999 999999998532 223333445666777777777777777 5566665554331
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
..+.. .....+.+|...|.+++|+|++.+|++
T Consensus 138 -----------------------------------------------~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 138 -----------------------------------------------ESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170 (330)
T ss_dssp -----------------------------------------------TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred -----------------------------------------------CCCCCeEEEEEeccCCCceEEEEECCCCCEEEE
Confidence 11000 011235578999999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccC--CCeEEEEeccCCCceEEEEECCcc--------e
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPS--GRFIVLAGLKGFNGQLEFYNVDEL--------E 548 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spd--g~~l~~~~~~~~dg~v~iwd~~~~--------~ 548 (712)
++.|+ .|++|++.++. ...+..+.+| .|.+++|+|+ +.+|++++. |+.|++||+.++ .
T Consensus 171 ~s~D~---~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 171 SSYDD---TVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD---DSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp EETTS---CEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET---TSCEEEEEEEEECTTSCEEEE
T ss_pred EcCCC---eEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC---CCeEEEEEecCCCccccceeE
Confidence 99999 99999986543 2256666655 6899999999 778999998 999999998754 2
Q ss_pred eeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc---eeee---eccc-ceeeeEEec--CCCCCCC
Q 005140 549 TMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK---LLYR---TLKD-HFFQFLWRP--RPPSFLT 616 (712)
Q Consensus 549 ~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~---~~~~---~~~~-~i~~~~w~p--~~~~l~s 616 (712)
.... .|...|.+++|++++ +|++++. |+.|+||+.... .+.. .|.. .+..++|+| ++..|++
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGA-----DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEET-----TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeC-----CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence 2222 367889999999765 7999999 999999998743 2222 2444 799999999 6889999
Q ss_pred hhhHHHHH
Q 005140 617 PEKEEEIA 624 (712)
Q Consensus 617 ~~~d~~i~ 624 (712)
++.|+.|+
T Consensus 315 ~s~Dg~v~ 322 (330)
T 2hes_X 315 GGDDGIVN 322 (330)
T ss_dssp EETTSEEE
T ss_pred ecCCCcEE
Confidence 99988765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=248.07 Aligned_cols=277 Identities=14% Similarity=0.127 Sum_probs=214.3
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+....+.+|...|++++| |+|.+||+++.++ |+||+.. +......+ .|. .|.+++|+|++++|++++.+
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD----- 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-----
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCCCCEEEEecCC-----
Confidence 3455678899999999999 9999999999999 8899998 66555444 333 49999999999999999999
Q ss_pred cCCCccEEEEEEccCC---ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 280 RDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
+.|++|++... +.+..+.+|...+. ++.| +++++++++ ++.|++|+ .+..+..
T Consensus 81 -----g~i~~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 81 -----TMINGVPLFATSGEDPLYTLIGHQGNVC-------------SLSF---QDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp -----SCEEEEETTCCTTSCC-CEECCCSSCEE-------------EEEE---ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred -----CeEEEEEeeecCCCCcccchhhcccCEE-------------EEEe---cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 99999998654 55677777766652 5666 456888888 99999999 4455544
Q ss_pred ccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccc
Q 005140 356 KSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 434 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 434 (712)
...+...+.++.|+| ++..+++ ++.++.+++|. ..
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~-----~~~d~~i~i~d--~~------------------------------------- 173 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLT-----ASADKTIKLWQ--ND------------------------------------- 173 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEE-----EETTSCEEEEE--TT-------------------------------------
T ss_pred cccCCCceeEEEEccCCCCEEEE-----EECCCCEEEEe--cC-------------------------------------
Confidence 555667788888877 7777776 55555555442 10
Q ss_pred cccccccEEEEEEecCCcceeEEEecC-CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-- 511 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-- 511 (712)
. ....+.. |...+.+++|+|++. +++++.++ .|++||++++. .+..+.
T Consensus 174 -----------------~--~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg---~i~i~d~~~~~------~~~~~~~~ 224 (313)
T 3odt_A 174 -----------------K--VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG---LIKLVDMHTGD------VLRTYEGH 224 (313)
T ss_dssp -----------------E--EEEEECSSCSSCEEEEEEEETTE-EEEEETTS---EEEEEETTTCC------EEEEEECC
T ss_pred -----------------c--eEEEEeccCcccEEEEEEcCCCe-EEEccCCC---eEEEEECCchh------hhhhhhcC
Confidence 0 0011223 688999999999998 88999999 99999997654 445554
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
...+++++|+|+| .|++++. ||.|++||+.+++.+.. .+...+++++|+|+|+ +++++. |+.+++|++
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-----dg~i~iw~~ 294 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGE---DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS-----DNLVRIFSQ 294 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEET---TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET-----TSCEEEEES
T ss_pred CceEEEEEEecCC-CEEEEec---CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC-----CCcEEEEeC
Confidence 4479999999999 5778887 99999999998887664 5667899999999999 556888 899999998
Q ss_pred cCc
Q 005140 590 NGK 592 (712)
Q Consensus 590 ~g~ 592 (712)
...
T Consensus 295 ~~~ 297 (313)
T 3odt_A 295 EKS 297 (313)
T ss_dssp CGG
T ss_pred CCC
Confidence 754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=276.75 Aligned_cols=316 Identities=10% Similarity=0.094 Sum_probs=216.1
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
.-|.+++|||||+++|+++.|+... ++. ..+.+ ..|...|.+++|||+| .+ +.+.+|+.
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~-d~~-~~~~l-~gh~~~v~~V~FsPdg-------~~----------~~~~~~~~- 74 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG-QPK-YAKDI-NCNSKNLFHVKEFPLE-------FE----------NKLDFELA- 74 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE-EEC-CCSCC-SSBGGGTEEEEEECCC-------CC----------CTTTTSCC-
T ss_pred ccEEEEEECCCCCEEEEEcCCceee-ccc-cccee-cCCCccEEEEEECCCC-------Cc----------ceEEEEeC-
Confidence 5678999999999999999999433 766 45444 3333459999999999 34 44445543
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc-----CeeeEE
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-----NVMDFS 367 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~ 367 (712)
.+..+..+. |...+. +++||| +|++||+++ ||.|++|+..+ ++.... |.. .|.+++
T Consensus 75 ~~~~~~~~~-~~~~V~-------------~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 75 QQNGLLNSQ-PVCYPR-------------VCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CSSCSSTTS-CSCCEE-------------EEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred CCceEeecC-CCCcEE-------------EEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence 222333332 333332 799999 999999999 99999999654 333333 332 599999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-----ceeee----eeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-----ELRQK----NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~----~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
|||+|++|++ ++.|+.++||........ .+... ..+.....+++|+|+| +++++.+++
T Consensus 137 fSPDG~~LAs-----gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t------ 203 (588)
T 2j04_A 137 WNPIESSIVV-----GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS------ 203 (588)
T ss_dssp ECSSSSCEEE-----EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC------
T ss_pred EcCCCCEEEE-----EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe------
Confidence 9999999999 777877776665443210 12222 1133467788999999 777777777
Q ss_pred cccEEEEEEecCCcceeEEEe-cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCCcee
Q 005140 439 YTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQAN 516 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~ 516 (712)
+++|++..........++ .+|...|.+++|+ |++||+++ ++ .|++|++.++.. ....+ +...+.
T Consensus 204 ---VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~---tIkLWd~~~~~~-----~~~~~gh~~~V~ 269 (588)
T 2j04_A 204 ---VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG---YVHKIDLKNYSI-----SSLKTGSLENFH 269 (588)
T ss_dssp ---EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS---EEEEEETTTTEE-----EEEECSCCSCCC
T ss_pred ---EEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC---eEEEEECCCCeE-----EEEEcCCCceEE
Confidence 899998765532112334 3788999999999 68888886 56 999999976442 12232 233689
Q ss_pred EEEE--ccCCCeEEEEeccCCCceEEEEECCcc-----------------------eeeee-ccccceeeEEECCCCCEE
Q 005140 517 ALFW--SPSGRFIVLAGLKGFNGQLEFYNVDEL-----------------------ETMAT-AEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 517 ~l~~--spdg~~l~~~~~~~~dg~v~iwd~~~~-----------------------~~~~~-~~~~~v~~~~~spdg~~l 570 (712)
.++| +|+|..|+++.. +|+ ++|..+.. ..+.. .+...|.+++|||||+.+
T Consensus 270 ~va~~~s~d~~~La~a~e---dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNK---TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSI 345 (588)
T ss_dssp EEEETTCSSCEEEEECSS---CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEE
T ss_pred EEEeeeCCCCCEEEEEcC---CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEE
Confidence 9999 999999999998 899 88887421 11111 112457889999999999
Q ss_pred EEEEccceeccccEEEEEecCceeeeecccceeeeEEecCC
Q 005140 571 ATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRP 611 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~ 611 (712)
|+++. | -....-++........+.|-|-.
T Consensus 346 A~~~~----------i--~~~~~~y~i~s~~~~~i~f~pL~ 374 (588)
T 2j04_A 346 AIVYD----------M--ERVAFKYKIASEQSFNIMFAPLY 374 (588)
T ss_dssp EEEEE----------E--ECSSCCCCCSSSCCEEEEEEESS
T ss_pred EEEEe----------c--cCceeEEeeccceEEEEEEEEcc
Confidence 88887 2 22223344455666777777743
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=259.84 Aligned_cols=275 Identities=17% Similarity=0.299 Sum_probs=211.1
Q ss_pred cCCCcc--cceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 210 KRSYWT--ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 210 ~~~~~~--v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
.+|... +.+++|++ ..+++++.++ |+||+.. ++.....+. |. .|.+++|+|+|++|++++.+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d--------- 155 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSHDGSFLSVGLGN--------- 155 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT---------
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC---------
Confidence 355544 45677775 4466666777 8999998 666555443 34 49999999999999999999
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-ceeccccccccc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVE 361 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-~~~~~~~~~~~~ 361 (712)
+.|++||+.+++.++.+.+|...+. +++|++ .+|++++ ++.|.+|++.. ...+.....|..
T Consensus 156 -g~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 156 -GLVDIYDVESQTKLRTMAGHQARVG-------------CLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp -SCEEEEETTTCCEEEEECCCSSCEE-------------EEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred -CeEEEEECcCCeEEEEecCCCCceE-------------EEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999999999999999998877763 677744 6888888 99999999984 444444556777
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.|.+++|+|++++|++ ++.++.+++| ++.+..
T Consensus 219 ~v~~~~~~~~~~~l~s-----~~~d~~v~iw--d~~~~~----------------------------------------- 250 (401)
T 4aez_A 219 EVCGLAWRSDGLQLAS-----GGNDNVVQIW--DARSSI----------------------------------------- 250 (401)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSCEEEE--ETTCSS-----------------------------------------
T ss_pred CeeEEEEcCCCCEEEE-----EeCCCeEEEc--cCCCCC-----------------------------------------
Confidence 8999999999988888 5566665544 322110
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE---cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeE
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH---GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANA 517 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~---~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~ 517 (712)
....+.+|...|.+++|+|++..+++.+ .|+ .|++||+.++. .+..+. ...+.+
T Consensus 251 -------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~---~i~i~d~~~~~------~~~~~~~~~~v~~ 308 (401)
T 4aez_A 251 -------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK---QIHFWNAATGA------RVNTVDAGSQVTS 308 (401)
T ss_dssp -------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC---EEEEEETTTCC------EEEEEECSSCEEE
T ss_pred -------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCC---EEEEEECCCCC------EEEEEeCCCcEEE
Confidence 0122346788999999999876555544 377 99999997654 444444 447999
Q ss_pred EEEccCCCeEEEEe--ccCCCceEEEEECCcceeee----eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 518 LFWSPSGRFIVLAG--LKGFNGQLEFYNVDELETMA----TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 518 l~~spdg~~l~~~~--~~~~dg~v~iwd~~~~~~~~----~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++|+|+|+++++++ . +|.|++|++.++.... ..|...|++++|+|+|++|++++. |+.+++|++..
T Consensus 309 ~~~s~~~~~l~~~~g~~---dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-----dg~i~iw~~~~ 380 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFP---DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-----DENLKFWRVYD 380 (401)
T ss_dssp EEECSSSSEEEEEECTT---TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-----TSEEEEEECCC
T ss_pred EEECCCCCeEEEEeecC---CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-----CCcEEEEECCC
Confidence 99999999999964 5 9999999999755443 257789999999999999999999 99999999874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-28 Score=247.15 Aligned_cols=280 Identities=15% Similarity=0.236 Sum_probs=212.1
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcceeeee---cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY---AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~---~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++|+||+++ +||+|....|+|||.. +++.+..+ .|. .|.+++|+|+|++||+|+.| ++|++|
T Consensus 27 y~~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D----------g~v~iw 94 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS----------AEVQLW 94 (318)
T ss_dssp TCBCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT----------SEEEEE
T ss_pred cceEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC----------CcEEEe
Confidence 35789999987 8888875559999999 77766554 244 39999999999999999999 999999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeEEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFSW 368 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~ 368 (712)
|+.+++.++.+.+|...+ ..+++ ++.++++++ ++.+.+|+..... .+.....|...+..+.+
T Consensus 95 ~~~~~~~~~~~~~h~~~~---------------~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 95 DVQQQKRLRNMTSHSARV---------------GSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp ETTTTEEEEEEECCSSCE---------------EEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred ecCCceeEEEecCccceE---------------EEeec-CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999987664 56777 888999998 9999999987553 33334456677888899
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEe
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK 448 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~ 448 (712)
++++++|++ ++.++.+++|. +.+.+...
T Consensus 159 ~~~~~~l~s-----~~~d~~i~iwd--~~~~~~~~--------------------------------------------- 186 (318)
T 4ggc_A 159 APDGRHLAS-----GGNDNLVNVWP--SAPGEGGW--------------------------------------------- 186 (318)
T ss_dssp CTTSSEEEE-----EETTSCEEEEE--SSCBTTBS---------------------------------------------
T ss_pred cCCCCEEEE-----EecCcceeEEE--CCCCcccc---------------------------------------------
Confidence 999988888 66677666553 22211000
Q ss_pred cCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEE
Q 005140 449 ERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIV 528 (712)
Q Consensus 449 ~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 528 (712)
........|.+.|.+++++|++..++..........|++|+...... .........+..+.|+|++..++
T Consensus 187 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 187 -----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp -----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEE
T ss_pred -----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccccceE
Confidence 00012234578899999999776554332221122899999866442 22233355789999999999998
Q ss_pred EEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 529 LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++.. .|+.|++||+.+++.+.+ +|...|++++|+|+|++|++++. |+.|+||++.
T Consensus 257 ~~sg~-~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~-----D~~v~iWd~~ 314 (318)
T 4ggc_A 257 SGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-----DETLRLWRCF 314 (318)
T ss_dssp EEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-----TTEEEEECCS
T ss_pred EEEEc-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----CCeEEEEECC
Confidence 87622 289999999999988875 67799999999999999999999 9999999975
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=260.13 Aligned_cols=284 Identities=11% Similarity=0.137 Sum_probs=221.6
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
+..++...|.+++|+|+|++|++++.+ +.|++||+.+++ .+..+.+|...+. +++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----------~~v~i~~~~~~~~~~~~~~~~h~~~v~-------------~~~ 59 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNN----------HEVHIYEKSGNKWVQVHELKEHNGQVT-------------GVD 59 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSS----------SEEEEEEEETTEEEEEEEEECCSSCEE-------------EEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCC----------CEEEEEeCCCCcEEeeeeecCCCCccc-------------EEE
Confidence 344555669999999999999999999 999999998887 8888988877664 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
|+| ++++|++++ |+.|++|++.+++..... ..+...|.+++|+|++++|++ ++.++.+++|.++.....
T Consensus 60 ~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~~v~i~d~~~~~~~-- 131 (372)
T 1k8k_C 60 WAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV-----GSGSRVISICYFEQENDW-- 131 (372)
T ss_dssp EET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE-----EETTSSEEEEEEETTTTE--
T ss_pred EeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEE-----EeCCCEEEEEEecCCCcc--
Confidence 999 999999998 999999999877644332 235567899999999988888 666777666655432100
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
. .......+|...|.+++|+|++++|++++
T Consensus 132 ----------------------------------------~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 132 ----------------------------------------W----------VCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ----------------------------------------E----------EEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ----------------------------------------e----------eeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 0 00011236788999999999999999999
Q ss_pred cCCCCCeEEEEEeeccccc------------CceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 483 GDSPRPDISFYSMRTAQHA------------GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~------------~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
.++ .|++||+...... .....+..+..+ .+.+++|+|+|++|++++. ||.|++||+.+++
T Consensus 162 ~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 162 CDF---KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH---DSTVCLADADKKM 235 (372)
T ss_dssp TTS---CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET---TTEEEEEEGGGTT
T ss_pred CCC---CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC---CCEEEEEECCCCc
Confidence 999 9999997421100 011255666543 6899999999999999998 9999999999888
Q ss_pred eeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC--c--------------------------------
Q 005140 549 TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--K-------------------------------- 592 (712)
Q Consensus 549 ~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~-------------------------------- 592 (712)
.+.. .|...+++++|+|+|++|+++ . |+.+++|++.. .
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-H-----DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-T-----TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-e-----CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 7765 456789999999999988887 6 89999999876 2
Q ss_pred ----------eeeeecccceeeeEEe-cCC---CCCCChhhHHHHH
Q 005140 593 ----------LLYRTLKDHFFQFLWR-PRP---PSFLTPEKEEEIA 624 (712)
Q Consensus 593 ----------~~~~~~~~~i~~~~w~-p~~---~~l~s~~~d~~i~ 624 (712)
.+...|...|++++|. +++ .+|+|++.|+.|+
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence 2223467899999977 555 8999999998876
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=268.72 Aligned_cols=299 Identities=10% Similarity=0.074 Sum_probs=218.8
Q ss_pred EecCCCCCCCcccc-cCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccC------cceeeeecCC-CeeEEEecCCC
Q 005140 196 LWNDARHLKPEPVY-KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANT------FNRLMRYAHP-QVKLIDFSPGE 265 (712)
Q Consensus 196 ~w~~~~~~~~~~~~-~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~------~~~~~~~~~~-~v~~i~~Spdg 265 (712)
.|+. .++....+ .+|...|++++|+| +|++||+++.|+ |+||+.. + ......+.|. .|.+++|+|++
T Consensus 47 ~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 47 MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK-EIIVGEVYSSSLTYDCSSTVTQITMIPNF 123 (437)
T ss_dssp GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH-HHHTTCCCSCSEEEECSSCEEEEEECTTS
T ss_pred cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECc-ccccCcccceeeeccCCCCEEEEEEeCCC
Confidence 4775 56667777 88999999999999 999999999999 8899987 4 2234444555 49999999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEcc---CCceeeeccCCCcccccCCC-CCcCCCCcCeEE--ecCCCCCEEEEec-
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVR---TGKVMRDFKGSADEFAVGGT-GGVAGVSWPVFR--WGGGKDKYFAKLG- 338 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~---~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~s~~dg~~la~~~- 338 (712)
++|++++.| +.|++||+. +++.++.+..+......... +....+. ++. +++ ++.+|++++
T Consensus 124 ~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~~ 190 (437)
T 3gre_A 124 DAFAVSSKD----------GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV--RMRAFVNE-EKSLLVALTN 190 (437)
T ss_dssp SEEEEEETT----------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE--EEEEEECS-SCEEEEEEET
T ss_pred CEEEEEeCC----------CEEEEEEeccccCCceeeccccceeEEEEccCcccccCce--EEEEEEcC-CCCEEEEEeC
Confidence 999999999 999999994 66666555433111000000 0000000 233 778 899999999
Q ss_pred CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEE
Q 005140 339 KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMY 416 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (712)
|+.|++||+.+++.+..... |...|.+++|+|++.+|++ ++.++.+++|. +...+.+
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-----~~~dg~i~iwd--~~~~~~~-------------- 249 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL-----GTTRGIIDIWD--IRFNVLI-------------- 249 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEE-----EETTSCEEEEE--TTTTEEE--------------
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEE-----EcCCCeEEEEE--cCCccEE--------------
Confidence 99999999998887766655 6778999999999999998 66676655543 2221110
Q ss_pred ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee----CCCEEEEEEcCCCCCeEEE
Q 005140 417 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP----KGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 417 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp----~g~~l~~~~~d~~~~~v~i 492 (712)
..+.+ +|...|.+++|+| ++.+|++++.|+ .|++
T Consensus 250 --------------------------------------~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg---~i~i 287 (437)
T 3gre_A 250 --------------------------------------RSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKT---FLTI 287 (437)
T ss_dssp --------------------------------------EEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTE---EEEE
T ss_pred --------------------------------------EEEec-CCCCceEEEEeccccCCCccEEEEEcCCC---cEEE
Confidence 00111 4566788886654 677999999999 9999
Q ss_pred EEeecccccCceeEEEEeC----------------------------CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 493 YSMRTAQHAGRVSKLTTLK----------------------------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~----------------------------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
||+.++. .+..+. ...+++++|+ ++++|++++. ||.|++||+
T Consensus 288 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~---d~~i~~wd~ 357 (437)
T 3gre_A 288 WNFVKGH------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA---TSSIVMFSL 357 (437)
T ss_dssp EETTTTE------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG---GTEEEEEET
T ss_pred EEcCCCc------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC---CCeEEEEEC
Confidence 9997654 222221 1247889999 7899999998 999999999
Q ss_pred Ccceeeee--c-------------------------------------cccceeeEEECCC--CCEEEEEEccceecccc
Q 005140 545 DELETMAT--A-------------------------------------EHFMATDVEWDPT--GRYVATAVTSVHEMENG 583 (712)
Q Consensus 545 ~~~~~~~~--~-------------------------------------~~~~v~~~~~spd--g~~l~t~s~~~~~~d~~ 583 (712)
.+++.+.. . |...|++++|+++ +.+|++++. ||.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-----dG~ 432 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN-----SGL 432 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET-----TSC
T ss_pred CCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC-----Cce
Confidence 87664432 1 6788999999998 789999999 999
Q ss_pred EEEEE
Q 005140 584 FNIWS 588 (712)
Q Consensus 584 v~iw~ 588 (712)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=263.45 Aligned_cols=290 Identities=11% Similarity=0.162 Sum_probs=205.4
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc-----------eeeee-cC-------------CCeeEEEecCC
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-----------RLMRY-AH-------------PQVKLIDFSPG 264 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-----------~~~~~-~~-------------~~v~~i~~Spd 264 (712)
.|...|++++|||+|++||+|+.++ |+||+.. +.. .+..+ .| ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4568999999999999999999999 8899988 444 23333 34 44999999999
Q ss_pred C--CEEEEEcCCCCCCCcCCCccEEEEEEccCCceee---------------------------------------e-cc
Q 005140 265 E--KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR---------------------------------------D-FK 302 (712)
Q Consensus 265 g--~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~---------------------------------------~-~~ 302 (712)
+ .+|++++.| +.|++||+.++.... . ..
T Consensus 105 ~~~~~l~s~s~d----------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 105 KNAAQFLLSTND----------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CSSSEEEEEECS----------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred CCcceEEEeCCC----------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 8 899999999 999999997654321 1 23
Q ss_pred CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC-ceecc-------cccccccCeeeEEECCCC-C
Q 005140 303 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES-FTLID-------KKSLKVENVMDFSWSPTD-P 373 (712)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~sp~~-~ 373 (712)
+|...+. +++|+| ++++|+++.|+.|++||+.+ ...+. ....|...|.+++|+|++ .
T Consensus 175 ~h~~~v~-------------~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 175 AHTYHIN-------------SISINS-DYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp CCSSCCC-------------EEEECT-TSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred CCCcceE-------------EEEEcC-CCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 3443332 799999 99999998899999999984 33332 233566679999999998 8
Q ss_pred eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 374 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 374 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
+|++ ++.++.+++| ++.+.+...... . .+.... .+
T Consensus 241 ~l~s-----~~~dg~i~iw--d~~~~~~~~~~~------~--~~~~~~------------------------------~~ 275 (447)
T 3dw8_B 241 TFVY-----SSSKGTIRLC--DMRASALCDRHS------K--LFEEPE------------------------------DP 275 (447)
T ss_dssp EEEE-----EETTSCEEEE--ETTTCSSSCTTC------E--EECCC---------------------------------
T ss_pred EEEE-----EeCCCeEEEE--ECcCCcccccee------e--EeccCC------------------------------Cc
Confidence 8888 6677766655 433322100000 0 000000 00
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec-ccccCceeEEEEeCCCc-----------------e
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQHAGRVSKLTTLKGKQ-----------------A 515 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~-----------------v 515 (712)
.....+.+|...|.+++|+|+|++|++++. + .|++||++. +. .+..+..+. +
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~---~v~iwd~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 276 SNRSFFSEIISSISDVKFSHSGRYMMTRDY-L---SVKVWDLNMENR------PVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp --CCHHHHHTTCEEEEEECTTSSEEEEEES-S---EEEEEETTCCSS------CSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred cccccccccCceEEEEEECCCCCEEEEeeC-C---eEEEEeCCCCcc------ccceeeccccccccccccccccccccc
Confidence 000012244569999999999999999988 7 999999975 33 233333331 2
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----------------------------------ccccceeeE
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----------------------------------AEHFMATDV 561 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----------------------------------~~~~~v~~~ 561 (712)
..++|+|+|++|++++. ||.|++||+.+++.+.. .....+.++
T Consensus 346 ~~~~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSY---NNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCEEECTTSSEEEEECS---TTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred eEEEECCCCCEEEEecc---CCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 34999999999999998 99999999998766431 112457889
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEe
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+|+|+|.+||+++. +.+++|.-
T Consensus 423 ~~~p~~~~la~~~~------~~~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATT------NNLYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECS------SCEEEEEC
T ss_pred EECCCCCEEEEEec------ceeeeecc
Confidence 99999999999987 46888863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-28 Score=250.49 Aligned_cols=301 Identities=9% Similarity=0.076 Sum_probs=205.7
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEE-EEcCC
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLV-TYSSH 274 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~-t~s~d 274 (712)
+|++ ....++..+..|...|++++|||||++||+++.++++||+.. ....+....+.++..+++++++++++ +++.+
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSEEEEEEET-TEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred cccc-cccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecC-CcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 3444 344555567889999999999999999999999999999998 77777666666799999999999885 56666
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCc-eec
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESF-TLI 353 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~-~~~ 353 (712)
++|+|||+.+++.+..+..+.... ++.|++ + .++.+.++.|++|++.++ +.+
T Consensus 81 ----------~~v~iWd~~~~~~~~~~~~~~~v~--------------~v~~~~-~--~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 81 ----------EVVHIWDDVKKQDVSRIKVDAPVK--------------DLFLSR-E--FIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp ----------TEEEEEETTTTEEEEEEECSSCEE--------------EEEECS-S--EEEEEETTEEEEEESSTTCCBS
T ss_pred ----------cEEEEEECCCCcEEEEEECCCceE--------------EEEEcC-C--EEEEEEcCEEEEEECCCCceee
Confidence 799999999999988887544322 678877 4 566667899999999987 555
Q ss_pred ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 354 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
..... ....++++| .++++.. ++.++. |.+|++.+......... .+...
T Consensus 134 ~~~~~---~~~~~~~s~--~~la~~s---g~~~g~--v~iwd~~~~~~~~~~~~----------~~~~~----------- 182 (355)
T 3vu4_A 134 TDDIR---FGGVCEFSN--GLLVYSN---EFNLGQ--IHITKLQSSGSATTQDQ----------GVQQK----------- 182 (355)
T ss_dssp SCCEE---EEEEEEEET--TEEEEEE---SSCTTC--EEEEECCC-----------------------------------
T ss_pred EEecc---CCceEEEEc--cEEEEeC---CCcCcE--EEEEECCCCCccccccc----------ccccc-----------
Confidence 44322 334456666 6666610 124444 44455443221100000 00000
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCe-EEEEEeecccccCceeEEEEeC-
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD-ISFYSMRTAQHAGRVSKLTTLK- 511 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~-v~i~d~~~~~~~~~~~~~~~~~- 511 (712)
.+ .+ ....+.+|.+.|.+++|+|+|++|++++.|+ + |++||+.++. .+..+.
T Consensus 183 ---------~~-------~p-~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~---~~v~iwd~~~~~------~~~~~~~ 236 (355)
T 3vu4_A 183 ---------AI-------LG-KGVLIKAHTNPIKMVRLNRKSDMVATCSQDG---TIIRVFKTEDGV------LVREFRR 236 (355)
T ss_dssp ---------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC---SEEEEEETTTCC------EEEEEEC
T ss_pred ---------cc-------Cc-ccEEEEccCCceEEEEECCCCCEEEEEeCCC---CEEEEEECCCCc------EEEEEEc
Confidence 00 00 0134668999999999999999999999999 8 9999997655 455554
Q ss_pred ---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-------------------------ccccceeeEEE
Q 005140 512 ---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------------------------AEHFMATDVEW 563 (712)
Q Consensus 512 ---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-------------------------~~~~~v~~~~~ 563 (712)
...|++++|+|+|++|++++. |+.|++||+........ ........++|
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSD---KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEET---TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEEC---CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 347999999999999999998 99999999975421110 01122367899
Q ss_pred CCCCCEEEEEEccceeccccEEEEEec
Q 005140 564 DPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 564 spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|+|++|++++. |+.+++|++.
T Consensus 314 ~~d~~~l~~~~~-----dg~~~~~~~~ 335 (355)
T 3vu4_A 314 ISESSLVVVWPH-----TRMIETFKVV 335 (355)
T ss_dssp SSSSEEEEEETT-----TTEEEEEEEE
T ss_pred eCCCCEEEEEeC-----CCeEEEEEEE
Confidence 999999999999 9999999976
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=277.77 Aligned_cols=273 Identities=12% Similarity=0.210 Sum_probs=217.3
Q ss_pred cCCCeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCC-----ceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 252 AHPQVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTG-----KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 252 ~~~~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
|...|++++|+|++ ++|+|++.| ++|+||++.++ ...+.+.+|...+. +++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D----------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-------------~v~ 437 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRD----------KSIILWKLTKDDKAYGVAQRRLTGHSHFVE-------------DVV 437 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETT----------SEEEEEECCCSTTCSCEEEEEEECCSSCEE-------------EEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCC----------CcEEEEEccCCCcccccccceecCCCCcEE-------------EEE
Confidence 33449999999975 799999999 99999998653 34567888877764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|+| ++++|++++ |++|+|||+.++..+.....|...|.+++|+|++++|++ ++.|+.++||..
T Consensus 438 ~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-----~s~D~~i~iwd~---------- 501 (694)
T 3dm0_A 438 LSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS-----ASRDRTIKLWNT---------- 501 (694)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-----EETTSCEEEECT----------
T ss_pred ECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEE-----EeCCCEEEEEEC----------
Confidence 999 999999999 999999999998887777778889999999999999998 778888776531
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC--CEEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIH 482 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~ 482 (712)
.+... +.+.. ...+|...|.+++|+|++ ..|++++
T Consensus 502 ---------------~~~~~--------------------~~~~~--------~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 502 ---------------LGECK--------------------YTISE--------GGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp ---------------TSCEE--------------------EEECS--------STTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ---------------CCCcc--------------------eeecc--------CCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 11100 00000 012678899999999987 5799999
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-cccccee
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMAT 559 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~ 559 (712)
.|+ .|++||+++.. ....+.+| .|++++|+|+|++|++++. ||.|++||+.+++.+.. .++..+.
T Consensus 539 ~d~---~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~v~ 606 (694)
T 3dm0_A 539 WDK---TVKVWNLSNCK------LRSTLAGHTGYVSTVAVSPDGSLCASGGK---DGVVLLWDLAEGKKLYSLEANSVIH 606 (694)
T ss_dssp TTS---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSBCEEEETTTTEEEECCBCSSCEE
T ss_pred CCC---eEEEEECCCCc------EEEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceEEEecCCCcEE
Confidence 999 99999997644 45556544 6999999999999999998 99999999999888765 3456799
Q ss_pred eEEECCCCCEEEEEEccceeccccEEEEEecCce-eeeec---------------------ccceeeeEEecCCCCCCCh
Q 005140 560 DVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LYRTL---------------------KDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 560 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~~---------------------~~~i~~~~w~p~~~~l~s~ 617 (712)
+++|+|++.+|++++. +.|+||++.... +.... .-.+.+++|+|++++|+++
T Consensus 607 ~~~~sp~~~~l~~~~~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATE------HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp EEEECSSSSEEEEEET------TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCcEEEEEcC------CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 9999999998877664 679999997543 22211 0126789999999999999
Q ss_pred hhHHHHH
Q 005140 618 EKEEEIA 624 (712)
Q Consensus 618 ~~d~~i~ 624 (712)
+.|+.|+
T Consensus 681 s~Dg~i~ 687 (694)
T 3dm0_A 681 YTDGVIR 687 (694)
T ss_dssp ETTSEEE
T ss_pred cCCCeEE
Confidence 9998765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=243.43 Aligned_cols=261 Identities=14% Similarity=0.157 Sum_probs=196.0
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCc
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPR 280 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~ 280 (712)
..+.+|...|++++|||+|++||+++.|+ |+||+..+ ....+..+ .|. .|.+++|+|+ |++|++++.|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------ 76 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------ 76 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------
Confidence 35688999999999999999999999999 88999872 22344444 344 4999999874 8999999999
Q ss_pred CCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCceec--
Q 005140 281 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTLI-- 353 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~-- 353 (712)
++|+|||+.+++ .+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.+....
T Consensus 77 ----~~v~iWd~~~~~~~~~~~~~~h~~~v~-------------~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 77 ----GKVMIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp ----TEEEEEEBSSSCBCCCEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred ----CEEEEEEcCCCceEEEEEeecCCCcee-------------EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 999999998874 4566667766553 799999 8 88999998 999999999865322
Q ss_pred ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 354 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
.....|...|.+++|+|++..-. ... ...+++++|++++.++.
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~--------~~~----------------------------~~~~~~~~l~sgs~D~~- 181 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEED--------GEH----------------------------NGTKESRKFVTGGADNL- 181 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------------------------------------------CCEEEEEETTSC-
T ss_pred eeeecccCccceEeecCCccccc--------ccC----------------------------CCCCCcceEEEEcCCCc-
Confidence 22335667799999999752110 000 01345678888888776
Q ss_pred ccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEeeCC---CEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 434 TKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKG---HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g---~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
+++|++....... ....+.+|...|.+++|+|++ .+|++++.|+ .|+||++++.... . ....
T Consensus 182 --------v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~---~v~iWd~~~~~~~--~-~~~~ 247 (297)
T 2pm7_B 182 --------VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR---TCIIWTQDNEQGP--W-KKTL 247 (297)
T ss_dssp --------EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS---CEEEEEESSTTSC--C-EEEE
T ss_pred --------EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC---cEEEEEeCCCCCc--c-ceee
Confidence 7888887643222 234577899999999999985 8999999999 9999999764321 1 1112
Q ss_pred e--C--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 510 L--K--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 510 ~--~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+ . ...+.+++|+|+|++|++++. ||.|++|+..
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~~las~~~---D~~v~lw~~~ 284 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGNVLALSGG---DNKVTLWKEN 284 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEET---TSCEEEEEEC
T ss_pred eecccCCCcEEEEEECCCCCEEEEEcC---CCcEEEEEEC
Confidence 2 2 346899999999999999998 9999999976
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=245.39 Aligned_cols=265 Identities=15% Similarity=0.135 Sum_probs=193.0
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee-cCC-CeeEEEecC--CCCEEEEEcCCCCCCCc
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHP-QVKLIDFSP--GEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~ 280 (712)
.+.+|...|++++|||+|++||+++.|+ |+|||+. +.. .+..+ .|. .|.+++|+| ++++|++++.|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~-~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D------ 80 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD------ 80 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEE-TTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec-CCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC------
Confidence 4578999999999999999999999999 8899998 443 33444 354 499999986 48999999999
Q ss_pred CCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCcee---
Q 005140 281 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTL--- 352 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~--- 352 (712)
++|+|||+.++. .+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.+...
T Consensus 81 ----~~v~iWd~~~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 81 ----RKVIIWREENGTWEKSHEHAGHDSSVN-------------SVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp ----SCEEEECCSSSCCCEEEEECCCSSCCC-------------EEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred ----CEEEEEECCCCcceEEEEccCCCCceE-------------EEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 999999998874 5667777776653 799999 8 78999999 99999999986532
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
......|...|.+++|+|+...-.. ...+.. .....+.+|++++.++.
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~----------------~~~~~~----------------~~~~~~~~l~sgs~D~~ 190 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSL----------------IDHPSG----------------QKPNYIKRFASGGCDNL 190 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC----------------------CCS----------------CCCCCCCBEECCBTTSB
T ss_pred eeeeccccCCcceEEEccccCCccc----------------cccccc----------------cCccccceEEEecCCCe
Confidence 2333456677999999998421000 000000 01234567777777766
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC----CEEEEEEcCCCCCeEEEEEeeccccc-CceeEE
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG----HRFAVIHGDSPRPDISFYSMRTAQHA-GRVSKL 507 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g----~~l~~~~~d~~~~~v~i~d~~~~~~~-~~~~~~ 507 (712)
+++|++...........+.+|...|.+++|+|++ ++|++++.|+ +|++|++.+.... .....+
T Consensus 191 ---------v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~---~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 191 ---------IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG---RVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp ---------CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC---EEEEEECSSTTCCCCBCCEE
T ss_pred ---------EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC---eEEEEEccCccccchhhhhh
Confidence 6788875433222334577899999999999987 8899999999 9999998753211 011233
Q ss_pred EEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 508 TTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 508 ~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.. ....+.+++|+|+|++|++++. |+.|++|+..
T Consensus 259 ~~-~~~~v~~v~~sp~g~~las~~~---D~~v~lw~~~ 292 (316)
T 3bg1_A 259 HK-FNDVVWHVSWSITANILAVSGG---DNKVTLWKES 292 (316)
T ss_dssp EE-CSSCEEEEEECTTTCCEEEEES---SSCEEEEEEC
T ss_pred hc-CCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEEC
Confidence 32 2457999999999999999998 9999999976
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=240.79 Aligned_cols=241 Identities=16% Similarity=0.285 Sum_probs=186.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK- 330 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d- 330 (712)
..|.+++|||+|++||+++.| ++|+|||+.+ ++.+..+.+|...+. +++|++ +
T Consensus 10 ~~V~~~~~s~~g~~las~s~D----------~~v~iw~~~~~~~~~~~~l~gH~~~V~-------------~v~~s~-~~ 65 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWAH-PK 65 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETT----------SCEEEEEBCSSCBCCCEEECCCSSCEE-------------EEEECC-GG
T ss_pred CceEEEEECCCCCEEEEEeCC----------CEEEEEecCCCCcEEEEEEccccCCeE-------------EEEecC-CC
Confidence 359999999999999999999 9999999864 467888999988763 689986 5
Q ss_pred -CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 331 -DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 331 -g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
+++|++++ |++|++|++.++. .+.....|...|.+++|+|+ +.+|++ ++.++.+++|.+......
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-----~s~d~~v~~wd~~~~~~~---- 136 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-----ASSDGKVSVVEFKENGTT---- 136 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEEBCSSSCB----
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-----EECCCcEEEEEecCCCce----
Confidence 88999999 9999999998764 33333456677999999997 788887 666666655543211000
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC----------
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK---------- 474 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~---------- 474 (712)
....+.+|...|.+++|+|+
T Consensus 137 --------------------------------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 137 --------------------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp --------------------------------------------------CCEEEECCSSCEEEEEECCCC---------
T ss_pred --------------------------------------------------eeeeeecccCccceEeecCCcccccccCCC
Confidence 00123367778888888886
Q ss_pred ---CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC---CeEEEEeccCCCceEEEEECCc
Q 005140 475 ---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG---RFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 475 ---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg---~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
+++|++++.|+ .|++||++++.. .......+.+| .|.+++|+|++ ++|++++. |+.|+|||+.+
T Consensus 167 ~~~~~~l~sgs~D~---~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~---D~~v~iWd~~~ 238 (297)
T 2pm7_B 167 TKESRKFVTGGADN---LVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ---DRTCIIWTQDN 238 (297)
T ss_dssp ---CCEEEEEETTS---CEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCEEEEEESS
T ss_pred CCCcceEEEEcCCC---cEEEEEEcCCCc--eEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC---CCcEEEEEeCC
Confidence 57999999999 999999976442 12244556555 69999999995 89999998 99999999986
Q ss_pred ce-----eee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 547 LE-----TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 547 ~~-----~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.. .+. ..+...+.+++|+|+|++||+++. |+.|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-----D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-----TSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-----CCcEEEEEEC
Confidence 32 111 245578999999999999999999 9999999975
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=244.79 Aligned_cols=302 Identities=14% Similarity=0.164 Sum_probs=192.8
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCc----ceeeee-cCC-CeeEEEecC--CCCEEEEEcCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSP--GEKYLVTYSSHEPS 277 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~~Sp--dg~~l~t~s~d~~~ 277 (712)
..+.+|...|++++|||+|++||+++.++ |+||+.. +. ..+..+ .|. .|.+++|+| ++++|++++.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d--- 80 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLD-KDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD--- 80 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEEC-SSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECC-CCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC---
Confidence 35689999999999999999999999999 8899998 43 233333 244 599999999 69999999999
Q ss_pred CCcCCCccEEEEEEccCC---------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEE
Q 005140 278 NPRDANRVVINIFDVRTG---------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVY 345 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iw 345 (712)
+.|++||+.++ +.+..+..|...+. +++|+| + +.+|++++ |+.|++|
T Consensus 81 -------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~l~~~~~dg~v~iw 139 (351)
T 3f3f_A 81 -------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY-------------SVKFAP-AHLGLKLACLGNDGILRLY 139 (351)
T ss_dssp -------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTCEEEEE
T ss_pred -------CeEEEEecCCCcccccccCcceeeeecccCCcee-------------EEEEcC-CCCCcEEEEecCCCcEEEe
Confidence 99999999887 55777777776653 799999 9 99999988 9999999
Q ss_pred EcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC---CC
Q 005140 346 ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS---GD 422 (712)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~ 422 (712)
|+.++..+....... .+..+.+.+.+ +......+.|+|+ +.
T Consensus 140 d~~~~~~~~~~~~~~-~~~~~~~~~~~-----------------------------------~~~~~~~~~~~p~~~~~~ 183 (351)
T 3f3f_A 140 DALEPSDLRSWTLTS-EMKVLSIPPAN-----------------------------------HLQSDFCLSWCPSRFSPE 183 (351)
T ss_dssp ECSSTTCTTCCEEEE-EEESCSCCCSS-----------------------------------CSCCCEEEEECCCSSSCC
T ss_pred cCCChHHhccccccc-cccccccccCC-----------------------------------cccceeEEEeccCCCCCc
Confidence 998776553322100 01111111100 0111122344554 55
Q ss_pred EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC----CEEEEEEcCCCCCeEEEEEeecc
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG----HRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g----~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+++++..++. + +|.....+.......+.+|...|.+++|+|++ ++|++++.|+ .|++||+..+
T Consensus 184 ~l~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg---~i~iwd~~~~ 250 (351)
T 3f3f_A 184 KLAVSALEQA---------I-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG---RIRIFKITEK 250 (351)
T ss_dssp EEEEEETTEE---------E-EEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS---CEEEEEEEEC
T ss_pred EEEEecCCCc---------E-EEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC---eEEEEeCCCC
Confidence 5555555443 2 33333323322335566899999999999998 8999999999 9999999765
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEecc-CCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~-~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
... ..............+++....+..+... .....+.+|+....+.+.. .|...|++++|+|+|++|++++.
T Consensus 251 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 251 LSP----LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp C-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred cCc----cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC
Confidence 421 1111111123334444444444443321 0144556666655565554 56789999999999999999999
Q ss_pred cceeccccEEEEEecC
Q 005140 576 SVHEMENGFNIWSFNG 591 (712)
Q Consensus 576 ~~~~~d~~v~iw~~~g 591 (712)
|+.|+||++..
T Consensus 327 -----dg~v~iw~~~~ 337 (351)
T 3f3f_A 327 -----DGKVRLWKATY 337 (351)
T ss_dssp -----TSCEEEEEECT
T ss_pred -----CCcEEEEecCc
Confidence 99999999973
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=246.20 Aligned_cols=273 Identities=12% Similarity=0.115 Sum_probs=206.6
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc----eeeeecCC-CeeEEEecCCCC-EEEEEcCCCCCCCcC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN----RLMRYAHP-QVKLIDFSPGEK-YLVTYSSHEPSNPRD 281 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~----~~~~~~~~-~v~~i~~Spdg~-~l~t~s~d~~~~~~~ 281 (712)
..+|...|++++|+|+|++||+++.++ |+||+.. +.. ......|. .|.+++|+|+++ +|++++.+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 78 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ------- 78 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEE-TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeC-CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-------
Confidence 457999999999999999999999999 8899998 544 33334455 499999999999 99999999
Q ss_pred CCccEEEEEEc-cCCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC--------
Q 005140 282 ANRVVINIFDV-RTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-------- 349 (712)
Q Consensus 282 ~~~~~I~iwd~-~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-------- 349 (712)
+.|++||+ .+++. ..+.+ |...+. +++|+| +.+|++++ |+.|++|++.+
T Consensus 79 ---g~i~~wd~~~~~~~-~~~~~~~~~~~v~-------------~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 79 ---GEILKVDLIGSPSF-QALTNNEANLGIC-------------RICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp ---SCEEEECSSSSSSE-EECBSCCCCSCEE-------------EEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred ---CeEEEEEeccCCce-EeccccCCCCceE-------------EEEeCC--CCEEEEEcCCCeEEEEcccccccccccc
Confidence 99999999 77765 66766 766553 689998 56677776 99999999987
Q ss_pred -ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEE
Q 005140 350 -FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVK 427 (712)
Q Consensus 350 -~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~ 427 (712)
++.+.... +...|.+++|+|++ +++ ++.++.++ +|++.. ..
T Consensus 140 ~~~~~~~~~-~~~~v~~~~~~~~~--l~~-----~~~d~~i~--i~d~~~~~~--------------------------- 182 (342)
T 1yfq_A 140 KNLNSNNTK-VKNKIFTMDTNSSR--LIV-----GMNNSQVQ--WFRLPLCED--------------------------- 182 (342)
T ss_dssp EESCSSSSS-SCCCEEEEEECSSE--EEE-----EESTTEEE--EEESSCCTT---------------------------
T ss_pred cCCeeeEEe-eCCceEEEEecCCc--EEE-----EeCCCeEE--EEECCcccc---------------------------
Confidence 66554443 55678899998887 554 33444433 333322 11
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeE
Q 005140 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK 506 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~ 506 (712)
.... .....|...+.+++|+| ++++|++++.++ .|++|+++..........
T Consensus 183 ------------------------~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 183 ------------------------DNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDG---RVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp ------------------------CCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTS---EEEEEECCTTCCSTTCTT
T ss_pred ------------------------ccce-eeecCCCCceeEEEECCCCCCEEEEEecCC---cEEEEEEcCCCccccccc
Confidence 0000 11225678899999999 999999999999 999999976510000002
Q ss_pred EEEeCCC-----------ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-ccceeeEEECCCCCEEEE
Q 005140 507 LTTLKGK-----------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 507 ~~~~~~~-----------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-~~~v~~~~~spdg~~l~t 572 (712)
...+..+ .+++++|+|+|++|++++. ||.|++||+.+++.+.. .| ...|++++ |+|++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecC---CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence 2222222 7999999999999999998 99999999998887765 45 67899999 99999999
Q ss_pred EEccceecccc
Q 005140 573 AVTSVHEMENG 583 (712)
Q Consensus 573 ~s~~~~~~d~~ 583 (712)
++. |+.
T Consensus 310 ~s~-----Dg~ 315 (342)
T 1yfq_A 310 ATS-----DDT 315 (342)
T ss_dssp EEE-----CTH
T ss_pred Eec-----CCc
Confidence 999 776
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=249.24 Aligned_cols=292 Identities=12% Similarity=0.121 Sum_probs=210.2
Q ss_pred cchhhccCCC---CCceEEEEECCeeEEEecCCCCCCCcccccC-----CCcccceEEEcCC----CcEEEEEecCc-eE
Q 005140 171 NLQKWLTDEK---ARDQFVIRSGTDTEVLWNDARHLKPEPVYKR-----SYWTESFVQWSPL----GTYLATVHRQG-AA 237 (712)
Q Consensus 171 ~l~~~~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----~~~~v~~v~~Spd----g~~lat~~~~~-i~ 237 (712)
.+.+..++|. +...+++..+++.+.+|+.. .......++. |...|++++|+|+ |++||+++.++ |+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC-GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcC-CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 4445555653 66678888888889999983 3444444433 5578999999999 78999999999 88
Q ss_pred EeecccCcceeeeec-CC-CeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec---cCCCcccccC
Q 005140 238 VWGGANTFNRLMRYA-HP-QVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF---KGSADEFAVG 311 (712)
Q Consensus 238 iw~~~~~~~~~~~~~-~~-~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~---~~~~~~~~~~ 311 (712)
||+.. +.+.+..+. |. .|.+++|+| ++++|++++.+ +.|++||+.+++.+..+ ..|...+.
T Consensus 99 v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~-- 165 (366)
T 3k26_A 99 IINPI-TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD----------HALRLWNIQTDTLVAIFGGVEGHRDEVL-- 165 (366)
T ss_dssp EECTT-TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT----------SCEEEEETTTTEEEEEECSTTSCSSCEE--
T ss_pred EEEch-hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC----------CeEEEEEeecCeEEEEecccccccCcee--
Confidence 99999 777777664 55 499999999 99999999999 99999999999988887 56666553
Q ss_pred CCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc----------------------------cccC
Q 005140 312 GTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL----------------------------KVEN 362 (712)
Q Consensus 312 ~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~----------------------------~~~~ 362 (712)
+++|+| ++++|++++ |+.|++|++.++..+..... +...
T Consensus 166 -----------~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 166 -----------SADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp -----------EEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred -----------EEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 799999 999999998 99999999998765433222 4444
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
|.+++|+ +.+|++ ++.++.+++|.. ......... ..+...
T Consensus 234 v~~~~~~--~~~l~~-----~~~d~~i~~wd~--~~~~~~~~~-----------~~~~~~-------------------- 273 (366)
T 3k26_A 234 VDCVRWL--GDLILS-----KSCENAIVCWKP--GKMEDDIDK-----------IKPSES-------------------- 273 (366)
T ss_dssp CCEEEEE--TTEEEE-----ECSSSEEEEEEE--SSTTCCGGG-----------CCTTCC--------------------
T ss_pred EEEEEEc--CCEEEE-----EecCCEEEEEeC--CCccccccc-----------cccCCc--------------------
Confidence 6666665 445555 444444333332 221100000 000000
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeC--CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC----Ccee
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----KQAN 516 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~v~ 516 (712)
.......+..|...|.+++|+|+ +++|++++.++ .|++|++.++.... .....+.. ..++
T Consensus 274 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~ 339 (366)
T 3k26_A 274 ---------NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG---KLYVWDLEVEDPHK--AKCTTLTHHKCGAAIR 339 (366)
T ss_dssp ---------CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS---CEEEEECCSSSGGG--CEEEEECCTTCCSCEE
T ss_pred ---------chheeccccccCCcEEEEEEcCCCCCcEEEEEecCC---cEEEEECCCCCCcc--ccceEEcccccCCceE
Confidence 00112345578889999999999 99999999999 99999998754321 13334433 4799
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+++|+|+|++|++++. ||.|++||+.
T Consensus 340 ~~~~s~~~~~l~s~~~---dg~i~iwd~~ 365 (366)
T 3k26_A 340 QTSFSRDSSILIAVCD---DASIWRWDRL 365 (366)
T ss_dssp EEEECTTSSEEEEEET---TSEEEEEEC-
T ss_pred EEEeCCCCCeEEEEeC---CCEEEEEEec
Confidence 9999999999999998 9999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=245.86 Aligned_cols=284 Identities=12% Similarity=0.177 Sum_probs=210.0
Q ss_pred CCCeeEEEecCCCCEEE-EEcC---CCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEec
Q 005140 253 HPQVKLIDFSPGEKYLV-TYSS---HEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~-t~s~---d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
...|.+++|+|++..|+ +++. + +.|+|||+.+++...... .|...+. +++|+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d----------~~v~iw~~~~~~~~~~~~~~~~~~v~-------------~~~~~ 74 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGT----------GVIQLYEIQHGDLKLLREIEKAKPIK-------------CGTFG 74 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCC----------EEEEEEEECSSSEEEEEEEEESSCEE-------------EEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCC----------cEEEEEeCCCCcccceeeecccCcEE-------------EEEEc
Confidence 34599999999996555 5554 6 899999999888654433 4444442 79999
Q ss_pred CCC---CCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeE------EECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 328 GGK---DKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDF------SWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 328 ~~d---g~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~------~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
| + +.+|++++ |+.|++|++.++. .+.....|...|.++ +|+|++++|++ ++.++.+++ |++
T Consensus 75 ~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~-----~~~d~~i~v--wd~ 146 (357)
T 3i2n_A 75 A-TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT-----GSRDGTVKV--WDP 146 (357)
T ss_dssp T-CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE-----EETTSCEEE--ECT
T ss_pred C-CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEE-----EeCCCeEEE--EeC
Confidence 9 8 68999988 9999999999887 665566677789998 45789999998 667766555 455
Q ss_pred CCcc-ceeeeeeee----ecceeEE----ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 397 PSKE-ELRQKNLFS----VSDCKMY----WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 397 ~~~~-~~~~~~~~~----~~~~~~~----~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
.... .+.....+. .....+. |+|++.+|+++..++. +.+|++..... .....|...|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~----~~~~~~~~~v~ 213 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD---------IKLFDLRNMAL----RWETNIKNGVC 213 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSE---------EEEEETTTTEE----EEEEECSSCEE
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCe---------EEEEECccCce----eeecCCCCceE
Confidence 4443 222222111 1233344 7899999999998876 78888765322 33346789999
Q ss_pred EEEEee---CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-EeCCCceeEEEEccCCC-eEEEEeccCCCceEEEE
Q 005140 468 AFAWEP---KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLKGKQANALFWSPSGR-FIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 468 ~~~~sp---~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iw 542 (712)
+++|+| ++.+|++++.++ .|++||++++.....+.... ..+...+++++|+|+|+ +|++++. ||.|++|
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw 287 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEG---KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG---AGGLHLW 287 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTT---EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEEE
T ss_pred EEEcCCCCCCCCEEEEECCCC---eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC---CCcEEEe
Confidence 999999 999999999999 99999998755332221111 12344799999999999 7888888 9999999
Q ss_pred ECCcce-------------------eee--eccccceeeEEECCCCCEEE-EEEccceeccccEEEEEecC
Q 005140 543 NVDELE-------------------TMA--TAEHFMATDVEWDPTGRYVA-TAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 543 d~~~~~-------------------~~~--~~~~~~v~~~~~spdg~~l~-t~s~~~~~~d~~v~iw~~~g 591 (712)
|+.... .+. ..|...|++++|+|+|++|+ +++. |+.++||++..
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~-----d~~i~iw~~~~ 353 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF-----DQTVRVLIVTK 353 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET-----TSEEEEEEECC
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC-----CCcEEEEECCC
Confidence 987432 222 35678999999999999998 7888 99999999863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=249.71 Aligned_cols=288 Identities=11% Similarity=0.116 Sum_probs=213.8
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCC------CcccccCCCcccceEEEcCC----C---cEEEEEecCc-eE
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLK------PEPVYKRSYWTESFVQWSPL----G---TYLATVHRQG-AA 237 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~------~~~~~~~~~~~v~~v~~Spd----g---~~lat~~~~~-i~ 237 (712)
+.+..++| ..+++.+.++.+.+|+.. ... ....+.+|...|++++|+|+ | ++|++++.++ |+
T Consensus 19 i~~~~~~~---~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 19 IFSVSACN---SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp EEEEEECS---SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred eEEEEecC---CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 44444455 577888889999999994 443 56677899999999999999 9 9999999998 88
Q ss_pred EeecccCcce-----eeee-cC------CCeeEEEec----CCCCE-EEEEcCCCCCCCcCCCccEEEEEEccC------
Q 005140 238 VWGGANTFNR-----LMRY-AH------PQVKLIDFS----PGEKY-LVTYSSHEPSNPRDANRVVINIFDVRT------ 294 (712)
Q Consensus 238 iw~~~~~~~~-----~~~~-~~------~~v~~i~~S----pdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~------ 294 (712)
+|++. +... +..+ .| ..|.+++|+ |++++ |++++.+ +.|++||+.+
T Consensus 95 iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 95 FYRIT-REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK----------GTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEE-ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT----------SCEEEEEEESSSSHHH
T ss_pred EEEcc-CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC----------CcEEEEeCCccccccc
Confidence 99998 5553 4444 34 559999999 99999 9999999 9999999988
Q ss_pred Cceee-----eccC-------CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc---
Q 005140 295 GKVMR-----DFKG-------SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--- 358 (712)
Q Consensus 295 g~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--- 358 (712)
++.+. .+.+ |...+. +++|+| ++ +|++++ ++.|++|++.+++.+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFAT-------------SVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCC-------------EEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred cceeeccCcceeeeeeccccCCCCCce-------------EEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 66665 5532 333332 799999 99 999988 99999999998887776666
Q ss_pred c---ccCeeeEEECCCCCeEEEEeecCCCCC-CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccc
Q 005140 359 K---VENVMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 434 (712)
Q Consensus 359 ~---~~~v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 434 (712)
| ...|.+++|+|++.+|++ ++.+ ....|.+|++.+.+.+....... .+..
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~-----~~~d~~~g~i~i~d~~~~~~~~~~~~~~--------~~~~------------- 282 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAI-----AHDSNSFGCITLYETEFGERIGSLSVPT--------HSSQ------------- 282 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEE-----EEEETTEEEEEEEETTTCCEEEEECBC--------------------------
T ss_pred ccccCCccceEEECCCCCEEEE-----EecCCCCceEEEEECCCCcccceeccCc--------cccc-------------
Confidence 6 778999999999999988 4333 11456666665443222111000 0000
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--- 511 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--- 511 (712)
..+....|...|.+++|+|++++|++++.|+ .|++||+.++. .+..+.
T Consensus 283 --------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~------~~~~~~~~~ 333 (397)
T 1sq9_A 283 --------------------ASLGEFAHSSWVMSLSFNDSGETLCSAGWDG---KLRFWDVKTKE------RITTLNMHC 333 (397)
T ss_dssp -----------------------CCBSBSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTTE------EEEEEECCG
T ss_pred --------------------ccccccccCCcEEEEEECCCCCEEEEEeCCC---eEEEEEcCCCc------eeEEEeccc
Confidence 0000113788999999999999999999999 99999997654 444444
Q ss_pred --------------------CCceeEEEEccCC----------CeEEEEeccCCCceEEEEECCcc
Q 005140 512 --------------------GKQANALFWSPSG----------RFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 512 --------------------~~~v~~l~~spdg----------~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
...+++++|+|+| ++|++++. ||.|++|++.++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~g 396 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---DRSIRWFREAGG 396 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET---TTEEEEEEEEC-
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC---CCcEEEEEcCCC
Confidence 4579999999999 79999998 999999999865
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=247.40 Aligned_cols=283 Identities=10% Similarity=0.099 Sum_probs=209.9
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccc--cCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVY--KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF 245 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~ 245 (712)
..+.+..++|++...+++.+.++.+.+|+.. .......+ .+|...|++++|+| ++.+|++++.++ |++|+.. +.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~ 151 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-GS 151 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT-SC
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-CC
Confidence 3455566677776688888889999999994 44444444 47999999999999 789999999999 8899998 43
Q ss_pred ceeeee--cC---CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCC
Q 005140 246 NRLMRY--AH---PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVS 320 (712)
Q Consensus 246 ~~~~~~--~~---~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (712)
.+..+ ++ ..|.+++|+|++++|++++.+ +.|++||+ +++.+..+..|...+.
T Consensus 152 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i~d~-~~~~~~~~~~h~~~v~----------- 208 (383)
T 3ei3_B 152 -VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST----------GRLLLLGL-DGHEIFKEKLHKAKVT----------- 208 (383)
T ss_dssp -EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT----------SEEEEEET-TSCEEEEEECSSSCEE-----------
T ss_pred -ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC----------CCEEEEEC-CCCEEEEeccCCCcEE-----------
Confidence 33333 22 349999999999999999999 99999998 7888999988887664
Q ss_pred cCeEEecCCCCC-EEEEec-CCeEEEEEcCC----ceecccccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEE
Q 005140 321 WPVFRWGGGKDK-YFAKLG-KNMISVYETES----FTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 321 ~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
+++|+| +++ +|++++ |+.|++||+.+ +..+... .+...|.+++|+| ++.+|++ ++.++. |.+
T Consensus 209 --~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~-----~~~d~~--i~i 277 (383)
T 3ei3_B 209 --HAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT-----TDQRNE--IRV 277 (383)
T ss_dssp --EEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE-----EESSSE--EEE
T ss_pred --EEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE-----EcCCCc--EEE
Confidence 799999 998 888888 99999999987 3344333 4667899999999 9999998 555554 555
Q ss_pred EecCCccceeeeeeee------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 394 VQIPSKEELRQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
|++.+...+.....+. ...+...|+| .+.+.
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------------------------------------------~~~~~ 314 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP-------------------------------------------MYDLI 314 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECS-------------------------------------------SSSEE
T ss_pred EECCCCccccccccccccccccccceEEeccC-------------------------------------------CCCce
Confidence 6655544322211110 0011112222 34455
Q ss_pred EEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC----CceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 468 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----KQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.++|+|+|++ +++.|+ .|++||+.++. .+..+.. ..+..++|+|+|++|++++ ||.|+|||
T Consensus 315 ~~~~s~dg~~--s~s~d~---~i~iwd~~~~~------~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s----d~~i~iw~ 379 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKR---TIDIYDANSGG------LVHQLRDPNAAGIISLNKFSPTGDVLASGM----GFNILIWN 379 (383)
T ss_dssp EEECBCCTTT--CTTCCC---CEEEEETTTCC------EEEEECBTTBCSCCCEEEECTTSSEEEEEE----TTEEEEEE
T ss_pred EEEecCCccc--ccCCCC---eEEEEecCCCc------eeeeecCCCCCceEEEEEEecCccEEEEec----CCcEEEEe
Confidence 6778888887 666777 99999997655 4555543 2467789999999999985 89999999
Q ss_pred CCc
Q 005140 544 VDE 546 (712)
Q Consensus 544 ~~~ 546 (712)
+++
T Consensus 380 ~~~ 382 (383)
T 3ei3_B 380 RED 382 (383)
T ss_dssp CC-
T ss_pred cCC
Confidence 873
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=265.09 Aligned_cols=308 Identities=10% Similarity=0.100 Sum_probs=227.7
Q ss_pred eEEEcCCCcEEEEEecCceEEeecccCcceeeee--cC-CCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 218 FVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY--AH-PQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~--~~-~~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
...|+|+|+.+++++ .|+.. ++.+..+ +| ..|.+++|+| ++++||+++.| ++|+|||+.
T Consensus 32 ~~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d----------g~v~vwd~~ 94 (437)
T 3gre_A 32 YKEFGPIQEIVRSPN-----MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQ----------GVIKIWNLK 94 (437)
T ss_dssp CGGGCCCCCCCCCCC-----GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT----------SEEEEEEHH
T ss_pred hhhcCCccccccccc-----ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCC----------ceEEEeECc
Confidence 346899999888776 48755 5555555 34 4599999999 99999999999 999999987
Q ss_pred C---Cce---eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC---CceecccccccccCe
Q 005140 294 T---GKV---MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE---SFTLIDKKSLKVENV 363 (712)
Q Consensus 294 ~---g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~---~~~~~~~~~~~~~~v 363 (712)
+ +.. ...+ .|...+. +++|+| ++++|++++ |+.|++|++. +++.+.....+ .+
T Consensus 95 ~~~~~~~~~~~~~~-~h~~~v~-------------~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i 157 (437)
T 3gre_A 95 EIIVGEVYSSSLTY-DCSSTVT-------------QITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CI 157 (437)
T ss_dssp HHHTTCCCSCSEEE-ECSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EE
T ss_pred ccccCcccceeeec-cCCCCEE-------------EEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--ee
Confidence 6 432 2222 3444442 799999 999999999 9999999995 44433222222 56
Q ss_pred eeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 364 MDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 364 ~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
..+.|+|++ ..+.. +...+++++.+|++++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~d~~--------- 193 (437)
T 3gre_A 158 RKINLKNFGKNEYAVR-----------------------------------MRAFVNEEKSLLVALTNLSR--------- 193 (437)
T ss_dssp EEEEGGGGSSCCCEEE-----------------------------------EEEEECSSCEEEEEEETTSE---------
T ss_pred EEEEccCcccccCceE-----------------------------------EEEEEcCCCCEEEEEeCCCe---------
Confidence 677777632 22111 11236889999999998877
Q ss_pred EEEEEEecCCcceeEEEecC--CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---CCcee
Q 005140 442 FELFRIKERDIPIEVLELDN--KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQAN 516 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v~ 516 (712)
+.+|++.... .. ..+.+ |...|.+++|+|++++|++++.|+ .|++||++++. .+..+. ..++.
T Consensus 194 i~iwd~~~~~-~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~------~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 194 VIIFDIRTLE-RL--QIIENSPRHGAVSSICIDEECCVLILGTTRG---IIDIWDIRFNV------LIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTTCC-EE--EEEECCGGGCCEEEEEECTTSCEEEEEETTS---CEEEEETTTTE------EEEEEBCTTCEEEE
T ss_pred EEEEeCCCCe-ee--EEEccCCCCCceEEEEECCCCCEEEEEcCCC---eEEEEEcCCcc------EEEEEecCCCCceE
Confidence 7888876532 22 33434 789999999999999999999999 99999997643 455543 23689
Q ss_pred EEEEc----cCCCeEEEEeccCCCceEEEEECCcceeeeec----------------------------cccceeeEEEC
Q 005140 517 ALFWS----PSGRFIVLAGLKGFNGQLEFYNVDELETMATA----------------------------EHFMATDVEWD 564 (712)
Q Consensus 517 ~l~~s----pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----------------------------~~~~v~~~~~s 564 (712)
+++|+ |+|++|++++. ||.|++||+.+++.+... |...|++++|+
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSS---KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEECTTTCTTEEEEEEEST---TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred EEEeccccCCCccEEEEEcC---CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 99665 46889999988 999999999977754321 44568899999
Q ss_pred CCCCEEEEEEccceeccccEEEEEecC-ceeeee---------------------------------------cccceee
Q 005140 565 PTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT---------------------------------------LKDHFFQ 604 (712)
Q Consensus 565 pdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~---------------------------------------~~~~i~~ 604 (712)
++++|++++. |+.|++|++.. ..+... |.+.|++
T Consensus 339 -~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 412 (437)
T 3gre_A 339 -NDKILLTDEA-----TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS 412 (437)
T ss_dssp -TTEEEEEEGG-----GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE
T ss_pred -CceEEEecCC-----CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee
Confidence 7899999999 99999999863 322111 5678999
Q ss_pred eEEecC--CCCCCChhhHHHHH
Q 005140 605 FLWRPR--PPSFLTPEKEEEIA 624 (712)
Q Consensus 605 ~~w~p~--~~~l~s~~~d~~i~ 624 (712)
++|+++ +..|++++.|+.|+
T Consensus 413 i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 413 ISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EEEEESSSSEEEEEEETTSCEE
T ss_pred EeeeccCCceEEEEEcCCceEE
Confidence 999998 67899998887654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-27 Score=241.49 Aligned_cols=270 Identities=13% Similarity=0.236 Sum_probs=210.1
Q ss_pred CC-CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----eeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 253 HP-QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----VMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 253 ~~-~v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
|. .|++|+|+|+ +++|||++.| ++|+|||+.+++ +.+.+.+|...+. +++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D----------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-------------~~~ 93 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRD----------KTIIMWKLTRDETNYGIPQRALRGHSHFVS-------------DVV 93 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETT----------SCEEEEEECCSSSCSEEEEEEECCCSSCEE-------------EEE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCC----------CeEEEEECCCCCcccceeeEEEeCCCCCEE-------------EEE
Confidence 54 4999999998 6899999999 999999987654 4677888877764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|+| ++++|++++ |+.|++|+............+...+..+.++|++.+|++ ++.++..++| +..
T Consensus 94 ~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~s~d~~~~~~--d~~------- 158 (340)
T 4aow_A 94 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS-----GSRDKTIKLW--NTL------- 158 (340)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-----EETTSCEEEE--CTT-------
T ss_pred ECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcccee-----ecCCCeEEEE--EeC-------
Confidence 999 999999999 999999999877766555555566778888888888887 5566655543 211
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC--CEEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIH 482 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~ 482 (712)
+.. .....+.+|...+..++|++++ .++++++
T Consensus 159 ----------------~~~------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 159 ----------------GVC------------------------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp ----------------SCE------------------------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ----------------CCc------------------------------eEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 100 0112234678889999998865 5677888
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-cccccee
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMAT 559 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~ 559 (712)
.|+ .|++|++.++. .+..+.++ .|++++|+|+|++|++++. ||.|++||+.+.+.+.. .++..++
T Consensus 193 ~d~---~i~i~d~~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~v~ 260 (340)
T 4aow_A 193 WDK---LVKVWNLANCK------LKTNHIGHTGYLNTVTVSPDGSLCASGGK---DGQAMLWDLNEGKHLYTLDGGDIIN 260 (340)
T ss_dssp TTS---CEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEECSSCEE
T ss_pred CCC---EEEEEECCCCc------eeeEecCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEeccCceeeeecCCceEE
Confidence 888 89999997654 45555544 7999999999999999998 99999999998888765 4457899
Q ss_pred eEEECCCCCEEEEEEccceeccccEEEEEecCceee-e-----------ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 560 DVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY-R-----------TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 560 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~-~-----------~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.++|+|++.++ +++. |+.|+||++.+..+. . .|...|++++|+|++++|++++.|+.|+
T Consensus 261 ~~~~~~~~~~~-~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 261 ALCFSPNRYWL-CAAT-----GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331 (340)
T ss_dssp EEEECSSSSEE-EEEE-----TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecCCCCcee-eccC-----CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 99999988655 5556 799999998864332 1 2456899999999999999999988764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=261.54 Aligned_cols=249 Identities=15% Similarity=0.177 Sum_probs=184.3
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
+..++...|.+++|||+|++|++++.+ +.|+|||+.++ +.+..+.+|...+. +++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d----------~~i~iw~~~~~~~~~~~~~~~h~~~v~-------------~~~ 62 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTAT----------NQVELYEQDGNGWKHARTFSDHDKIVT-------------CVD 62 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSS----------SCBCEEEEETTEEEECCCBCCCSSCEE-------------EEE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCC----------CEEEEEEccCCceEEEEEEecCCceEE-------------EEE
Confidence 344555679999999999999999999 99999999988 78888988887764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCce---ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFT---LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
|+| ++++|++++ |+.|++|++.++. .......|...|.+++|+|++++|++ ++.++.+++|.++. .+.
T Consensus 63 ~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~~i~iwd~~~--~~~ 134 (377)
T 3dwl_C 63 WAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV-----GSGARVISVCYFEQ--END 134 (377)
T ss_dssp ECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE-----EESSSCEEECCC-------
T ss_pred EeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE-----EecCCeEEEEEECC--ccc
Confidence 999 999999999 9999999999876 33333456677999999999988888 66666655543221 100
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC-CCCceEEEEEeeCCCEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~ 480 (712)
......+.+ |...|.+++|+|++++|++
T Consensus 135 ---------------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 135 ---------------------------------------------------WWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---------------------------------------------------CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------------------------ceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 000012334 7899999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccccC------------ceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 481 IHGDSPRPDISFYSMRTAQHAG------------RVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~------------~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
++.|+ .|++||+....... ....+..+. ...+.+++|+|+|++|++++. ||.|++||+.++
T Consensus 164 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCADR---KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH---DSSVTIAYPSAP 237 (377)
T ss_dssp EESSS---CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET---TTEEC-CEECST
T ss_pred EeCCC---EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC---CCcEEEEECCCC
Confidence 99999 99999996322110 122444442 236999999999999999998 999999999987
Q ss_pred ee----ee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 548 ET----MA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 548 ~~----~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+. +. ..|...+++++|+|+|++|++++. + .+.+|+..
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----~-~~~~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYN-----Y-SPILLQGN 280 (377)
T ss_dssp TSCEEECCCEECSSSCEEEEEEEETTEEEEEESS-----S-SEEEECCC
T ss_pred CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC-----C-cEEEEEeC
Confidence 65 43 366788999999999999988876 4 44577654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=245.34 Aligned_cols=272 Identities=18% Similarity=0.314 Sum_probs=207.8
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccC-CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKR-SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLI 259 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i 259 (712)
.+++...++.+.+|+. ..+.....+.. |...|++++|+|+|++||+++.+| |.||+.. +...+..+. |. .|.++
T Consensus 105 ~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 105 NVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-SQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp SEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEE
T ss_pred CEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-CCeEEEEecCCCCceEEE
Confidence 4667778889999998 44554444444 788999999999999999999999 8899998 777766663 44 49999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
+| ++++|++++.+ +.|++||+. .+..+..+.+|...+. +++|+| ++++|++++
T Consensus 183 ~~--~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~s~~ 236 (401)
T 4aez_A 183 SW--NRHVLSSGSRS----------GAIHHHDVRIANHQIGTLQGHSSEVC-------------GLAWRS-DGLQLASGG 236 (401)
T ss_dssp EE--ETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred EE--CCCEEEEEcCC----------CCEEEEecccCcceeeEEcCCCCCee-------------EEEEcC-CCCEEEEEe
Confidence 99 56899999999 999999998 5667888888877663 799999 999999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|+.|++||+.++..+.....+...|.+++|+|++..+++. +++.....|.+|++.+.+.+
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~----~~gs~d~~i~i~d~~~~~~~--------------- 297 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLAT----GGGTMDKQIHFWNAATGARV--------------- 297 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEE----ECCTTTCEEEEEETTTCCEE---------------
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEE----ecCCCCCEEEEEECCCCCEE---------------
Confidence 9999999999887776666677789999999987655542 33223444555554332110
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE--cCCCCCeEEEEEe
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH--GDSPRPDISFYSM 495 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~--~d~~~~~v~i~d~ 495 (712)
..+ .|...|.+++|+|++++|++++ .++ .|++|++
T Consensus 298 ---------------------------------------~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg---~i~v~~~ 334 (401)
T 4aez_A 298 ---------------------------------------NTV-DAGSQVTSLIWSPHSKEIMSTHGFPDN---NLSIWSY 334 (401)
T ss_dssp ---------------------------------------EEE-ECSSCEEEEEECSSSSEEEEEECTTTC---EEEEEEE
T ss_pred ---------------------------------------EEE-eCCCcEEEEEECCCCCeEEEEeecCCC---cEEEEec
Confidence 011 2356799999999999999976 577 9999999
Q ss_pred ecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 496 RTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 496 ~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.++.. .....+.+ ..+.+++|+|+|++|++++. ||.|++|++.+++.+..
T Consensus 335 ~~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~---dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 335 SSSGL----TKQVDIPAHDTRVLYSALSPDGRILSTAAS---DENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ETTEE----EEEEEEECCSSCCCEEEECTTSSEEEEECT---TSEEEEEECCC------
T ss_pred CCccc----eeEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEECCCCccccc
Confidence 76442 23333433 47899999999999999998 99999999998876654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=257.76 Aligned_cols=305 Identities=14% Similarity=0.244 Sum_probs=201.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----------eeeeccCCC------------cccccC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----------VMRDFKGSA------------DEFAVG 311 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-----------~~~~~~~~~------------~~~~~~ 311 (712)
.|.+++|||+|++||+|+.+ +.|+|||+.++. .+..+.+|. ..+.
T Consensus 30 ~V~~v~~s~~g~~la~g~~d----------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-- 97 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKG----------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-- 97 (447)
T ss_dssp SEEEEEECSSSSEEEEEETT----------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC--
T ss_pred cEEEEEECCCCCEEEEEcCC----------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE--
Confidence 49999999999999999999 999999998877 477888886 3332
Q ss_pred CCCCcCCCCcCeEEecCCCC--CEEEEec-CCeEEEEEcCCceecccc-c--ccccCeeeEEECCCCCeEEEEeecCCCC
Q 005140 312 GTGGVAGVSWPVFRWGGGKD--KYFAKLG-KNMISVYETESFTLIDKK-S--LKVENVMDFSWSPTDPIISLFVPELGGG 385 (712)
Q Consensus 312 ~~~~~~~~~~~~~~~s~~dg--~~la~~~-d~~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~sp~~~~la~~~~~~~~~ 385 (712)
+++|+| ++ .+|++++ |+.|++|++.++...... . .+.+.+....-. ..-.+....
T Consensus 98 -----------~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~------ 158 (447)
T 3dw8_B 98 -----------KIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV-TTLRVPVFR------ 158 (447)
T ss_dssp -----------EEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC-CSCCCCEEE------
T ss_pred -----------EEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc-cceEecccc------
Confidence 799999 88 6788888 999999999865432110 0 000000000000 000000000
Q ss_pred CCCeEEEEEecCCccceee-eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE-----Ee
Q 005140 386 NQPARVSLVQIPSKEELRQ-KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL-----EL 459 (712)
Q Consensus 386 ~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~l 459 (712)
... +.... ..... ...+......+.|+|+|++|+++ .++. +.+|++...+.....+ .+
T Consensus 159 --~~~-~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~---------i~iwd~~~~~~~~~~~~~~~~~~ 222 (447)
T 3dw8_B 159 --PMD-LMVEA---SPRRIFANAHTYHINSISINSDYETYLSA-DDLR---------INLWHLEITDRSFNIVDIKPANM 222 (447)
T ss_dssp --EEE-EEEEE---EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSE---------EEEEETTEEEEEEEEEECCCSSG
T ss_pred --chh-eeeec---cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCe---------EEEEECCCCCceeeeeecccccc
Confidence 000 00000 00000 11234445567888888888887 5655 6777765322222212 35
Q ss_pred cCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--------------ceeEEEEccCC
Q 005140 460 DNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--------------QANALFWSPSG 524 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--------------~v~~l~~spdg 524 (712)
.+|...|.+++|+|++ ++|++++.|+ .|++||++++..... .+..+..+ .+.+++|+|+|
T Consensus 223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 297 (447)
T 3dw8_B 223 EELTEVITAAEFHPNSCNTFVYSSSKG---TIRLCDMRASALCDR--HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG 297 (447)
T ss_dssp GGCCCCEEEEEECSSCTTEEEEEETTS---CEEEEETTTCSSSCT--TCEEECCC-----CCHHHHHTTCEEEEEECTTS
T ss_pred cccCcceEEEEECCCCCcEEEEEeCCC---eEEEEECcCCccccc--eeeEeccCCCccccccccccCceEEEEEECCCC
Confidence 5889999999999998 9999999999 999999977552100 12333322 78999999999
Q ss_pred CeEEEEeccCCCceEEEEECCc-ceeeee--ccccc---------------eeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDE-LETMAT--AEHFM---------------ATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~-~~~~~~--~~~~~---------------v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
++|++++ ++.|++||+.. ++.+.. .|... +..++|+|+|++|++++. |+.|+|
T Consensus 298 ~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----dg~v~i 368 (447)
T 3dw8_B 298 RYMMTRD----YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----NNFFRM 368 (447)
T ss_dssp SEEEEEE----SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----TTEEEE
T ss_pred CEEEEee----CCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc-----CCEEEE
Confidence 9999887 59999999986 665544 22211 334999999999999999 999999
Q ss_pred EEecCceeeee-----------------------------------cccceeeeEEecCCCCCCChhhH
Q 005140 587 WSFNGKLLYRT-----------------------------------LKDHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 587 w~~~g~~~~~~-----------------------------------~~~~i~~~~w~p~~~~l~s~~~d 620 (712)
|++........ ....+..++|+|++..|++++.+
T Consensus 369 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~ 437 (447)
T 3dw8_B 369 FDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN 437 (447)
T ss_dssp EETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred EEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence 99874432211 12468889999999999877653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=247.01 Aligned_cols=259 Identities=11% Similarity=0.082 Sum_probs=184.3
Q ss_pred eEEEecCCCCCCCc---------ccccCCCcccceEEEcCCCcEEEEEec-----------Cc-eEEeecccCcceeeee
Q 005140 193 TEVLWNDARHLKPE---------PVYKRSYWTESFVQWSPLGTYLATVHR-----------QG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 193 ~~~~w~~~~~~~~~---------~~~~~~~~~v~~v~~Spdg~~lat~~~-----------~~-i~iw~~~~~~~~~~~~ 251 (712)
.+.+|+........ ..+.+|...+.++++ ++..++++.. ++ +++|+.......+...
T Consensus 44 ~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~ 121 (365)
T 4h5i_A 44 KLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL 121 (365)
T ss_dssp EEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE
T ss_pred EEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEe
Confidence 47799874333221 235677778877765 4667777643 34 7788876222222111
Q ss_pred ------c---CC-CeeEEEecCCCCEEEEEc--CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCC
Q 005140 252 ------A---HP-QVKLIDFSPGEKYLVTYS--SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGV 319 (712)
Q Consensus 252 ------~---~~-~v~~i~~Spdg~~l~t~s--~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (712)
. +. .+.+++|||||++|++++ .| ++|+|||+.+++.+..+..+ ..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d----------~~i~iwd~~~~~~~~~~~~~-~~V~---------- 180 (365)
T 4h5i_A 122 TSVDFDASTNADDYTKLVYISREGTVAAIASSKVP----------AIMRIIDPSDLTEKFEIETR-GEVK---------- 180 (365)
T ss_dssp EEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS----------CEEEEEETTTTEEEEEEECS-SCCC----------
T ss_pred eeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC----------CEEEEeECCCCcEEEEeCCC-CceE----------
Confidence 0 11 288999999999987655 56 89999999999998888644 3332
Q ss_pred CcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCC--eEEEEEe
Q 005140 320 SWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQP--ARVSLVQ 395 (712)
Q Consensus 320 ~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~--~~i~~~~ 395 (712)
+++||| ||++|++++++.+.+|+..++..+... ..|...|.+++|+|+++.+++ ++.++. ..++.|+
T Consensus 181 ---~v~fsp-dg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~-----~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 181 ---DLHFST-DGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA-----ASLKKGKGIVLTKIS 251 (365)
T ss_dssp ---EEEECT-TSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE-----EEESSSCCEEEEEEE
T ss_pred ---EEEEcc-CCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE-----EecCCcceeEEeecc
Confidence 799999 999999999888888888877654332 234556899999999998887 333332 3344443
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
...... .......+.+|...|++++|+|+|
T Consensus 252 ~~~~~~--------------------------------------------------~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 252 IKSGNT--------------------------------------------------SVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EETTEE--------------------------------------------------EEEEEEEEESSCSCEEEEEECTTS
T ss_pred ccccee--------------------------------------------------cceeeeeecCCCCCeEeEEECCCC
Confidence 221100 001113455788999999999999
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
++||+++.|+ .|+|||+.++. ++..+ .+| .|++++|||||++|++++. |++|+||++.
T Consensus 282 ~~lasgs~D~---~V~iwd~~~~~------~~~~~~~gH~~~V~~v~fSpdg~~laS~S~---D~tvrvw~ip 342 (365)
T 4h5i_A 282 ELAVLASNDN---SIALVKLKDLS------MSKIFKQAHSFAITEVTISPDSTYVASVSA---ANTIHIIKLP 342 (365)
T ss_dssp CEEEEEETTS---CEEEEETTTTE------EEEEETTSSSSCEEEEEECTTSCEEEEEET---TSEEEEEECC
T ss_pred CceEEEcCCC---EEEEEECCCCc------EEEEecCcccCCEEEEEECCCCCEEEEEeC---CCeEEEEEcC
Confidence 9999999999 99999997654 56554 444 7999999999999999998 9999999986
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=241.73 Aligned_cols=241 Identities=17% Similarity=0.260 Sum_probs=184.3
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
...|.+++|+|+|++||+++.| ++|+|||+.++. .+..+.+|...+. +++|++ +
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D----------~~v~lwd~~~~~~~~~~~l~gH~~~V~-------------~v~~~~-~ 68 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSD----------RSVKIFDVRNGGQILIADLRGHEGPVW-------------QVAWAH-P 68 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETT----------TEEEEEEEETTEEEEEEEEECCSSCEE-------------EEEECC-G
T ss_pred cCeEEEeeEcCCCCEEEEEeCC----------CeEEEEEecCCCcEEEEEEcCCCccEE-------------EEEeCC-C
Confidence 3459999999999999999999 999999998875 4678888987763 689986 4
Q ss_pred --CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCcc-ce
Q 005140 331 --DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKE-EL 402 (712)
Q Consensus 331 --g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~ 402 (712)
+++|++++ |++|++||+.++. .+.....|...|.+++|+|+ +.+|++ ++.|+.+++|.+...... ..
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-----gs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-----GSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-----ECSSSCEEEEEECSSSCEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-----EcCCCCEEEEecCCCCCccee
Confidence 78999999 9999999998764 23333456778999999998 788888 778888777765432100 00
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC--------
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-------- 474 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-------- 474 (712)
. .+.+|...|.+++|+|+
T Consensus 144 ~------------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 144 K------------------------------------------------------INNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp C------------------------------------------------------BTTSSSSCBCCCEECCCCCC-----
T ss_pred e------------------------------------------------------eeccccCCcceEEEccccCCccccc
Confidence 0 11234445555555554
Q ss_pred ---------CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC----CeEEEEeccCCCceE
Q 005140 475 ---------GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG----RFIVLAGLKGFNGQL 539 (712)
Q Consensus 475 ---------g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg----~~l~~~~~~~~dg~v 539 (712)
+++|++++.|+ .|++|++.... ....+..+.+| .|.+++|+|++ ++|++++. |+.|
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~---D~~v 240 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDN---LIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ---DGRV 240 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTS---BCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET---TCEE
T ss_pred cccccCccccceEEEecCCC---eEEEEEeCCCC---ccceeeecccCCCceEEEEecCCCCCCCceEEEEcC---CCeE
Confidence 57899999999 99999996432 12355566655 69999999987 88999998 9999
Q ss_pred EEEECCcc---e---eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 540 EFYNVDEL---E---TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 540 ~iwd~~~~---~---~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++|++.+. . .+...|...|.+++|+|+|++||+++. |+.++||+..
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-----D~~v~lw~~~ 292 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG-----DNKVTLWKES 292 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES-----SSCEEEEEEC
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-----CCeEEEEEEC
Confidence 99998752 1 122346688999999999999999999 9999999975
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=248.66 Aligned_cols=294 Identities=13% Similarity=0.204 Sum_probs=228.7
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+.++.+ ++++|++++.| ++|++||+.+++.+..+.+|...+. +++|++ ++ +|+
T Consensus 125 ~~~~~~--~~~~l~sgs~d----------g~i~vwd~~~~~~~~~~~~h~~~V~-------------~l~~~~-~~-~l~ 177 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADD----------KMIRVYDSINKKFLLQLSGHDGGVW-------------ALKYAH-GG-ILV 177 (464)
T ss_dssp EEEEEE--ETTEEEEEETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEECS-TT-EEE
T ss_pred EEEEEE--CCCEEEEEcCC----------CcEEEEECCCCcEEEEEeCCCcCEE-------------EEEEcC-CC-EEE
Confidence 455555 67899999999 9999999999999999999988774 799999 88 777
Q ss_pred Eec-CCeEEEEEcCCceecccccccccCeeeEEEC--CCCCeEEEEeecCCCCCCCeEEEEEecCCccc-----------
Q 005140 336 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWS--PTDPIISLFVPELGGGNQPARVSLVQIPSKEE----------- 401 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~----------- 401 (712)
+++ |++|++|++.++..+.....|...|.+++|+ |++.+|++ ++.++.+++|.+.......
T Consensus 178 s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-----~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE-----EETTSCEEEEECCCCCCC------CCSSEE
T ss_pred EEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE-----EcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 777 9999999999998877777788889999998 57788888 7788877776654332110
Q ss_pred ----------eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 402 ----------LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 402 ----------~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+.....+.... ..+++++.++++++.++. +.+|++... .....+.+|...|.+++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d~~---------i~vwd~~~~---~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNT---------LIVWDVAQM---KCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCE--EEEEEETTEEEEEETTSC---------EEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred eeccCCCeEEEEEccCccceE--EEEcCCCCEEEEEeCCCe---------EEEEECCCC---cEEEEecCCCCCEEEEEE
Confidence 11111111122 245788999999998877 889987642 223556789999999999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+|+++++++++.|+ .|++||+.++. .+..+.++ .+.+++|+ +++|++++. ||.|++||+.++..
T Consensus 319 ~~~~~~l~sg~~dg---~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 319 DHERKRCISASMDT---TIRIWDLENGE------LMYTLQGHTALVGLLRLS--DKFLVSAAA---DGSIRGWDANDYSR 384 (464)
T ss_dssp ETTTTEEEEEETTS---CEEEEETTTTE------EEEEECCCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCE
T ss_pred cCCCCEEEEEeCCC---cEEEEECCCCc------EEEEEeCCCCcEEEEEEc--CCEEEEEeC---CCcEEEEECCCCce
Confidence 99999999999999 99999997654 56666544 68888887 589999998 99999999998776
Q ss_pred eeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee---ecccceeeeEEecCCCCCCCh
Q 005140 550 MATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR---TLKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 550 ~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~---~~~~~i~~~~w~p~~~~l~s~ 617 (712)
.... +...+..++|+|+|++|++++. +.++||++. |..+.. .+...+++++|+ +..++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~l~~~~d------g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~ 449 (464)
T 3v7d_B 385 KFSYHHTNLSAITTFYVSDNILVSGSE------NQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAA 449 (464)
T ss_dssp EEEEECTTCCCEEEEEECSSEEEEEET------TEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEE
T ss_pred eeeecCCCCccEEEEEeCCCEEEEecC------CeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEE
Confidence 6654 4466778899999999988774 899999987 555543 256789999997 3444433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=248.31 Aligned_cols=291 Identities=9% Similarity=0.043 Sum_probs=213.3
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.+|.+++|||||++|||++.| ++|+ |...++ .+.+|...+ | +++|+| +|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D----------~TV~--d~~~~~---~l~gh~~~v------------~-~V~FsP-dg-- 64 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPD----------ISIG--QPKYAK---DINCNSKNL------------F-HVKEFP-LE-- 64 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSS----------EEEE--EECCCS---CCSSBGGGT------------E-EEEEEC-CC--
T ss_pred ccEEEEEECCCCCEEEEEcCC----------ceee--cccccc---eecCCCccE------------E-EEEECC-CC--
Confidence 459999999999999999999 9998 755554 446777766 4 699999 88
Q ss_pred EEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee---
Q 005140 334 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV--- 410 (712)
Q Consensus 334 la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--- 410 (712)
.++.+.+|+......+ .. .+.+.|.+++|||+|..||+ ++.++.++||. ... .+.... +..
T Consensus 65 ----~~~~~~~~~~~~~~~~-~~-~~~~~V~~vawSPdG~~LAs-----~s~dg~V~iwd--~~~--~l~~l~-~~~~~~ 128 (588)
T 2j04_A 65 ----FENKLDFELAQQNGLL-NS-QPVCYPRVCKPSPIDDWMAV-----LSNNGNVSVFK--DNK--MLTNLD-SKGNLS 128 (588)
T ss_dssp ----CCCTTTTSCCCSSCSS-TT-SCSCCEEEEEECSSSSCEEE-----EETTSCEEEEE--TTE--EEEECC-CSSCST
T ss_pred ----CcceEEEEeCCCceEe-ec-CCCCcEEEEEECCCCCEEEE-----EeCCCcEEEEe--CCc--eeeecc-CCCccc
Confidence 4555555554422222 11 23567999999999999999 77888877775 222 222212 221
Q ss_pred --cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc--c--eeEEEe----cCCCCceEEEEEeeCCCEEEE
Q 005140 411 --SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI--P--IEVLEL----DNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 411 --~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~--~~~~~l----~~h~~~v~~~~~sp~g~~l~~ 480 (712)
....++|||+|++|++++.+++ +.+|++..... + +....+ .+|...|.+++|+|+| +++
T Consensus 129 ~~sv~svafSPDG~~LAsgs~DGt---------VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 129 SRTYHCFEWNPIESSIVVGNEDGE---------LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp TTCEEEEEECSSSSCEEEEETTSE---------EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred cccEEEEEEcCCCCEEEEEcCCCE---------EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 3457899999999999999988 89999887532 1 122333 5788899999999999 888
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-eee-ccc
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT-AEH 555 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~~~-~~~ 555 (712)
++.|+ .|++|++.++... ....++ +...|.+++|+ |+.|++++ ++.|++||+.+++. ... +|.
T Consensus 198 ss~D~---tVrlWd~~~~~~~---~~~~tL~~~h~~~V~svaFs--g~~LASa~----~~tIkLWd~~~~~~~~~~~gh~ 265 (588)
T 2j04_A 198 ALSNN---SVFSMTVSASSHQ---PVSRMIQNASRRKITDLKIV--DYKVVLTC----PGYVHKIDLKNYSISSLKTGSL 265 (588)
T ss_dssp EETTC---CEEEECCCSSSSC---CCEEEEECCCSSCCCCEEEE--TTEEEEEC----SSEEEEEETTTTEEEEEECSCC
T ss_pred EeCCC---eEEEEECCCCccc---cceeeecccccCcEEEEEEE--CCEEEEEe----CCeEEEEECCCCeEEEEEcCCC
Confidence 88888 9999999765421 112233 23469999999 68998886 68999999998777 444 778
Q ss_pred cceeeEEE--CCCCCEEEEEEccceeccccEEEEEec-------C-----------------ceeeee-cccceeeeEEe
Q 005140 556 FMATDVEW--DPTGRYVATAVTSVHEMENGFNIWSFN-------G-----------------KLLYRT-LKDHFFQFLWR 608 (712)
Q Consensus 556 ~~v~~~~~--spdg~~l~t~s~~~~~~d~~v~iw~~~-------g-----------------~~~~~~-~~~~i~~~~w~ 608 (712)
..+.+++| +|||..|+++.. +|. ++|.++ + +.+... ....|++++++
T Consensus 266 ~~V~~va~~~s~d~~~La~a~e-----dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~S 339 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNK-----TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLS 339 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSS-----CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEEC
T ss_pred ceEEEEEeeeCCCCCEEEEEcC-----CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEEC
Confidence 89999999 999999999998 777 888753 1 111100 11248889999
Q ss_pred cCCCCCCChhhH
Q 005140 609 PRPPSFLTPEKE 620 (712)
Q Consensus 609 p~~~~l~s~~~d 620 (712)
|+|+.+++++.-
T Consensus 340 PdG~~lA~~~~i 351 (588)
T 2j04_A 340 PDGYSIAIVYDM 351 (588)
T ss_dssp TTSSEEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 999999988764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=255.36 Aligned_cols=304 Identities=8% Similarity=0.057 Sum_probs=206.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCc----ccccCCCcccceEEEcCC------CcEEEEEecCc-eEEeecccCcce-----
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPE----PVYKRSYWTESFVQWSPL------GTYLATVHRQG-AAVWGGANTFNR----- 247 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~----~~~~~~~~~v~~v~~Spd------g~~lat~~~~~-i~iw~~~~~~~~----- 247 (712)
.|+..+.++++.+|+.. ..+.. ..+.+|...|.+++|+|+ |.+||+++.|+ |+||++. ....
T Consensus 175 ~laS~s~D~tI~iWd~~-~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~-~~~~~~~~~ 252 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMN-TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII-DNATDVHVF 252 (524)
T ss_dssp -------CEEEEEEEEE-TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC-CCSSSSSEE
T ss_pred hhccCCCCceEEEEEcc-CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC-CCccccccc
Confidence 34556678899999983 33321 235677888999999997 67999999999 8899997 3321
Q ss_pred ------eeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-eeeeccCCCcccccCCCCCcCC
Q 005140 248 ------LMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 248 ------~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 318 (712)
...+ +...|.+++|+|++ +|++|+.| ++|++||+.++. +...+.+|...+.
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D----------gtV~lWD~~~~~~~~~~~~~H~~~V~--------- 312 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN----------GFVAEFDLTDPEVPSFYDQVHDSYIL--------- 312 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT----------SEEEEEETTBCSSCSEEEECSSSCEE---------
T ss_pred eeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC----------CEEEEEECCCCCCceEEeecccccEE---------
Confidence 1122 23359999999865 89999999 999999998774 4456778877663
Q ss_pred CCcCeE--EecCCCC-CEEEEec-CCeEEEEEcCCceeccccccccc--CeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 319 VSWPVF--RWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLKVE--NVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 319 ~~~~~~--~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
++ .|++ ++ .+||+++ |++|+|||+.+++.+.....+.. .|.+++|+|++..+++ ++.++.+ .
T Consensus 313 ----sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s-----~~~d~tv--~ 380 (524)
T 2j04_B 313 ----SVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY-----SDGASSL--R 380 (524)
T ss_dssp ----EEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE-----ECSSSEE--E
T ss_pred ----EEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE-----eCCCCcE--E
Confidence 45 6788 88 8999999 99999999998776544444443 4789999999999887 6666654 5
Q ss_pred EEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceEEEEE
Q 005140 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAW 471 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~ 471 (712)
+|++.....+.....+......++|+|+|++|++++.|++ +.+|++...-..... ..-..+...+.+++|
T Consensus 381 lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt---------v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~ 451 (524)
T 2j04_B 381 AVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS---------LIITNAARRLLHGIKNSSATQKSLRLWKWDY 451 (524)
T ss_dssp EEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE---------EECCBSCSSTTTCC------CCCCEEEECBC
T ss_pred EEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE---------EEEEechHhhccccccCccceeeeEEEEecc
Confidence 5666665554444446667778899999999999999988 677775432111000 000011235779999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEee-cccccCceeEEEEeCC--CceeEEEEccCCC---eEEEEeccCCCceEEEEECC
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMR-TAQHAGRVSKLTTLKG--KQANALFWSPSGR---FIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~-~~~~~~~~~~~~~~~~--~~v~~l~~spdg~---~l~~~~~~~~dg~v~iwd~~ 545 (712)
+|+|+.+.. .+. +.+|... ++. .+..+.+ ..|++++|||++. .+++|+. +|.|+||++.
T Consensus 452 sp~g~~~~~--~~~----~~~~~~~~~g~------~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~---~g~vrlw~l~ 516 (524)
T 2j04_B 452 SIKDDKYRI--DSS----YEVYPLTVNDV------SKAKIDAHGINITCTKWNETSAGGKCYAFSNS---AGLLTLEYLS 516 (524)
T ss_dssp CSSSCEEEE--CCC----CCCCC-------------------CCCSCCCEEECCSTTTTTEEEEECT---TSEEEEEECS
T ss_pred CCCCCeEEc--cCC----ceecccccCCc------ceeeecCCCceEEEEECCCCCCccHHHHhhcc---CceEEEEEcc
Confidence 999985532 221 2233322 111 3344444 3799999999964 8999887 9999999987
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=242.00 Aligned_cols=294 Identities=13% Similarity=0.151 Sum_probs=207.0
Q ss_pred CCCCCcccccCCCcccceEEEcCC---CcEEEEEecCc-eEEeecccCccee-eee-cCC-CeeEEEecCCCCEEEEEcC
Q 005140 201 RHLKPEPVYKRSYWTESFVQWSPL---GTYLATVHRQG-AAVWGGANTFNRL-MRY-AHP-QVKLIDFSPGEKYLVTYSS 273 (712)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~v~~Spd---g~~lat~~~~~-i~iw~~~~~~~~~-~~~-~~~-~v~~i~~Spdg~~l~t~s~ 273 (712)
........+.+|...|++++|+|+ |++||+++.++ |+||+..+....+ ..+ .|. .|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 455667788999999999999999 69999999999 8899998324443 333 344 5999999999999999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe--cCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW--GGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
+ +.|++||+.+++.+. +..|...+. +++| ++ ++.+|++++ |+.|++||+.++
T Consensus 107 d----------g~v~iwd~~~~~~~~-~~~~~~~v~-------------~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 107 D----------KTAKMWDLSSNQAIQ-IAQHDAPVK-------------TIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp T----------SEEEEEETTTTEEEE-EEECSSCEE-------------EEEEEECS-SCEEEEEEETTSEEEEECSSCS
T ss_pred C----------CcEEEEEcCCCCcee-eccccCceE-------------EEEEEeCC-CCCEEEEccCCCcEEEEECCCC
Confidence 9 999999999888766 444555542 6899 89 999999998 999999999988
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee--eeeeecceeEEECcCC--CEEEE
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK--NLFSVSDCKMYWQSSG--DYLAV 426 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~g--~~l~~ 426 (712)
+.+.....+ ..+.++.+.++ .+++ ++.++.+.+|.+........... .........+.+.+.. ..+++
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~--~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 162 NPMMVLQLP-ERCYCADVIYP--MAVV-----ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SCSEEEECS-SCEEEEEEETT--EEEE-----EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred cEEEEEecC-CCceEEEecCC--eeEE-----EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 776554433 34566666644 5555 33556655555433222111111 1122222233333322 22888
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCC------------ceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND------------KIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~------------~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
++.++. +.+|++...........+.+|.. .|.+++|+|++++|++++.|+ .|++||
T Consensus 234 ~~~dg~---------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd 301 (368)
T 3mmy_A 234 GSIEGR---------VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG---RFSFWD 301 (368)
T ss_dssp EETTSE---------EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS---CEEEEE
T ss_pred ecCCCc---------EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC---eEEEEE
Confidence 888776 78898876543222334445554 799999999999999999999 999999
Q ss_pred eecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 495 MRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+.++. .+..+..+ ++.+++|+|+|++|++++.......+.+|+..
T Consensus 302 ~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 302 KDART------KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp TTTTE------EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCCCc------EEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 97654 56666543 79999999999999999872222234444444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-26 Score=236.98 Aligned_cols=254 Identities=14% Similarity=0.152 Sum_probs=199.2
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCC
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPS 277 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~ 277 (712)
.....+.+|...|++++|||+|++||+++.++ |+||+..+ +...+..+ .|. .|.+++|+|+ +++|++++.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--- 78 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD--- 78 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC---
Confidence 34567889999999999999999999999998 88999862 23334444 244 5999999988 9999999999
Q ss_pred CCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCcee
Q 005140 278 NPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~ 352 (712)
+.|++||+.+++ .+..+..|...+. +++|+| + +.+|++++ |+.|++|++.++..
T Consensus 79 -------g~v~iwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 79 -------GKVLIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp -------SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred -------CEEEEEEcCCCceeEeeeecCCCcceE-------------EEEeCC-CCCCCEEEEecCCCcEEEEecCCCCc
Confidence 999999999987 6777777776653 799999 9 89999998 99999999987643
Q ss_pred cc--cccccccCeeeEEECC-------------CCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeE
Q 005140 353 ID--KKSLKVENVMDFSWSP-------------TDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKM 415 (712)
Q Consensus 353 ~~--~~~~~~~~v~~~~~sp-------------~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~ 415 (712)
.. ....+...|.+++|+| ++.+|++ ++.++.+++|........ .......+......+
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-----GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEE-----EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEE-----EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence 32 2234666799999999 6889988 778888777776644322 223333345566778
Q ss_pred EECcC---CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe--cCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 416 YWQSS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL--DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 416 ~~s~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
.|+|+ +.+|++++.++. +.+|++.....+.....+ ..|...|.+++|+|+|++|++++.|+ .|
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~---------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i 280 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRT---------CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KV 280 (379)
T ss_dssp EECCCCSSSEEEEEEETTSC---------EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS---SE
T ss_pred EECCCCCCCCeEEEEeCCCE---------EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC---cE
Confidence 99999 899999998877 899999875433322322 34788999999999999999999999 99
Q ss_pred EEEEeecc
Q 005140 491 SFYSMRTA 498 (712)
Q Consensus 491 ~i~d~~~~ 498 (712)
++|++...
T Consensus 281 ~iw~~~~~ 288 (379)
T 3jrp_A 281 TLWKENLE 288 (379)
T ss_dssp EEEEEEET
T ss_pred EEEeCCCC
Confidence 99999754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-26 Score=241.75 Aligned_cols=276 Identities=20% Similarity=0.315 Sum_probs=205.1
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcc--cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEP--VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR 247 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~ 247 (712)
++.+|= + ...++++ .++++.+|+. ..++... .+.+|...|++|+|||+|++||+|+.|+ |+||++. +++.
T Consensus 109 ~~l~wS--~--~n~lAvg-ld~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~-~~~~ 181 (420)
T 4gga_A 109 NLVDWS--S--GNVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKR 181 (420)
T ss_dssp BCEEEC--T--TSEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEE
T ss_pred eeEEEC--C--CCEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC-CCcE
Confidence 556663 2 2355555 4788999998 4555444 3457888899999999999999999999 8899999 7887
Q ss_pred eeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 248 LMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 248 ~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
+..+. |. .+.+++| ++.+|++++.+ +.+++||.... ..+..+.+|...+. .+
T Consensus 182 ~~~~~~h~~~v~~~s~--~~~~l~sgs~d----------~~i~~~d~~~~~~~~~~~~~h~~~~~-------------~~ 236 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW--NSYILSSGSRS----------GHIHHHDVRVAEHHVATLSGHSQEVC-------------GL 236 (420)
T ss_dssp EEEECCCSSCEEEEEE--ETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EE
T ss_pred EEEEeCCCCceEEEee--CCCEEEEEeCC----------CceeEeeecccceeeEEeccccccee-------------ee
Confidence 77764 33 3666655 67899999999 99999998764 45677888877653 68
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceec----ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLI----DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.|+| +++++++++ |+.+++|+..++... .....+...|.+++|+|.+..+++... ++.|+.++ +|++.+.
T Consensus 237 ~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~--gs~D~~I~--iwd~~t~ 311 (420)
T 4gga_A 237 RWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRHIR--IWNVCSG 311 (420)
T ss_dssp EECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE--CTTTCEEE--EEETTTT
T ss_pred eecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe--ecCCCEEE--EEeCCcc
Confidence 9999 999999999 999999999876532 223345567999999998765543211 22444444 4444322
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
..+ ..+ .+...+.++.|+|+++.++
T Consensus 312 ~~~------------------------------------------------------~~~-~~~~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 312 ACL------------------------------------------------------SAV-DAHSQVCSILWSPHYKELI 336 (420)
T ss_dssp EEE------------------------------------------------------EEE-ECSSCEEEEEEETTTTEEE
T ss_pred ccc------------------------------------------------------eee-ccccceeeeeecCCCCeEE
Confidence 110 011 1256788899999999999
Q ss_pred EEEc--CCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 480 VIHG--DSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 480 ~~~~--d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
++++ |+ .|+|||+.++. ++..+.+| .|++++|||+|++|++++. |++|+|||+......
T Consensus 337 ~~sg~~d~---~I~iwd~~~~~------~v~~l~gH~~~V~~l~~spdg~~l~S~s~---D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 337 SGHGFAQN---QLVIWKYPTMA------KVAELKGHTSRVLSLTMSPDGATVASAAA---DETLRLWRCFELDPA 399 (420)
T ss_dssp EEECTTTC---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSCEEEEET---TTEEEEECCSCSSCC
T ss_pred EEEecCCC---EEEEEECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCcc
Confidence 8874 56 89999997654 67777766 7999999999999999998 999999999765443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=250.58 Aligned_cols=290 Identities=10% Similarity=0.049 Sum_probs=199.4
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCC-CCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCccee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHL-KPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
+.+..++|.....+++++.++.+.+|+..... .....+.+|...|++|+|+| +|.+|++++.|+ |+|||+. +....
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-~~~~~ 200 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILR 200 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT-SCEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-CCcee
Confidence 44556677666678888999999999984332 23445678999999999998 789999999999 8899998 44332
Q ss_pred eee-cCC---CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 249 MRY-AHP---QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 249 ~~~-~~~---~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
... ++. .+.+++|+|++++|++|+.+ +.|++||+ .++.+..+.+|...+. ++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d----------g~i~~wd~-~~~~~~~~~~h~~~v~-------------~v 256 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNV----------GNVILLNM-DGKELWNLRMHKKKVT-------------HV 256 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSS----------SBEEEEES-SSCBCCCSBCCSSCEE-------------EE
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCC----------CcEeeecc-CcceeEEEecccceEE-------------ee
Confidence 222 222 27899999999999999999 99999997 5677888888877764 79
Q ss_pred EecCCCCC-EEEEec-CCeEEEEEcCCceecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 325 RWGGGKDK-YFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 325 ~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+|+| ++. +|++++ |+.|+|||+.+....... ..|...|.+++|+|+|.+|++ ++.|+.++|| ++.+.
T Consensus 257 ~~~p-~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-----~~~D~~i~iw--d~~~~ 328 (435)
T 4e54_B 257 ALNP-CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-----TDQKSEIRVY--SASQW 328 (435)
T ss_dssp EECT-TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE-----EESSSCEEEE--ESSSS
T ss_pred eecC-CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE-----EcCCCEEEEE--ECCCC
Confidence 9999 876 677777 999999999876543322 346678999999999999999 7777776665 44433
Q ss_pred cceeeeeeee------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 400 EELRQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 400 ~~~~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
........+. .......|+|++.. ..+++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~ 365 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNL-------------------------------------------IVVGRYP 365 (435)
T ss_dssp SSEEEECCCCCCCCSSSCCCBCEECSSSSC-------------------------------------------EEEECCC
T ss_pred ccceEEecccccccccceeEEEEEcCCCCE-------------------------------------------EEEEEcC
Confidence 3221111000 01111122222222 2223334
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-C--CceeEE-EEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-G--KQANAL-FWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~--~~v~~l-~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++..+++++.++ ..|++||..++. .+..+. + ..|.++ +|||+|++|++++ |+.|+||++++++.
T Consensus 366 d~~~~~~~~~~~--~~i~iwd~~~g~------~~~~l~~~~~~~v~s~~~fspdg~~lasg~----d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 366 DPNFKSCTPYEL--RTIDVFDGNSGK------MMCQLYDPESSGISSLNEFNPMGDTLASAM----GYHILIWSQQEART 433 (435)
T ss_dssp CTTSCCSSTTCC--CCEEEECSSSCC------EEEEECCSSCCCCCCEEEECTTSSCEEEEC----SSEEEECCCC----
T ss_pred CCCeEEEEecCC--CEEEEEECCCCc------EEEEEeCCCCCcEEEEEEECCCCCEEEEEc----CCcEEEEECCcCee
Confidence 444333333332 279999997765 444443 2 256666 6999999999875 78999999997764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=240.41 Aligned_cols=245 Identities=16% Similarity=0.294 Sum_probs=193.3
Q ss_pred eecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 250 RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 250 ~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
..|...|.+++|+|+|++||+++.+ +.|+|||+. +++.+..+.+|...+. +++|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~h~~~v~-------------~~~~~ 64 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWA 64 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETT----------SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEEC
T ss_pred cCCcccEEEEEEcCCCCEEEEEECC----------CcEEEEecCCCcceeeeEecCCCCcEE-------------EEEeC
Confidence 3344569999999999999999999 999999998 6677888888887764 79999
Q ss_pred CCC--CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 328 GGK--DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 328 ~~d--g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+ + +++|++++ |+.|++|++.++. .+.....|...|.+++|+|+ +.+|++ ++.++.+++|.+. ...
T Consensus 65 ~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~d~~i~v~d~~--~~~ 136 (379)
T 3jrp_A 65 H-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-----ASSDGKVSVVEFK--ENG 136 (379)
T ss_dssp C-GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEECC--TTS
T ss_pred C-CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE-----ecCCCcEEEEecC--CCC
Confidence 8 7 89999999 9999999999876 44444456677999999998 888887 5556555544322 110
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-------
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP------- 473 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp------- 473 (712)
. .....+.+|...|.+++|+|
T Consensus 137 ---------------------------------------------------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 137 ---------------------------------------------------T-TSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp ---------------------------------------------------C-CCEEEEECCTTCEEEEEECCCC-----
T ss_pred ---------------------------------------------------c-eeeEEecCCCCceEEEEEcCccccccc
Confidence 0 01122346788999999999
Q ss_pred ------CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccC---CCeEEEEeccCCCceEEEE
Q 005140 474 ------KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPS---GRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 474 ------~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spd---g~~l~~~~~~~~dg~v~iw 542 (712)
++.+|++++.|+ .|++||++++... ...+..+..| .+.+++|+|+ +++|++++. ||.|++|
T Consensus 165 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---dg~i~iw 236 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADN---LVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ---DRTCIIW 236 (379)
T ss_dssp -----CTTCEEEEEETTS---CEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCEEEE
T ss_pred cccCCCCCCEEEEEeCCC---eEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC---CCEEEEE
Confidence 699999999999 9999999865422 2344455544 7999999999 899999998 9999999
Q ss_pred ECCcce-----eeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 543 NVDELE-----TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 543 d~~~~~-----~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
|+.++. .+.. .+...+++++|+|+|++|++++. |+.++||++.
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~i~iw~~~ 286 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 286 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-----SSSEEEEEEE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-----CCcEEEEeCC
Confidence 998753 2222 36688999999999999999999 9999999987
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=242.20 Aligned_cols=279 Identities=11% Similarity=0.037 Sum_probs=204.7
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcc---eeeeecC-------------------------------------
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFN---RLMRYAH------------------------------------- 253 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~---~~~~~~~------------------------------------- 253 (712)
.++.+++|||+|++|+++..+.|.+|++. +++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 46789999999998888877779999988 666 4433321
Q ss_pred ------------------C-CeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccC--CCcccc
Q 005140 254 ------------------P-QVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKG--SADEFA 309 (712)
Q Consensus 254 ------------------~-~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~--~~~~~~ 309 (712)
. .|.+++|||+|++| ++++.+ +.|+|||+. +++.+..+.. +...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD----------KSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGG----------TEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC----------CeEEEEECcCCCCceeeeeecccCCCCce
Confidence 1 49999999999996 899888 999999998 8888888763 333332
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc----cccccccCeeeEEECCC---CCeEEEEeec
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID----KKSLKVENVMDFSWSPT---DPIISLFVPE 381 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~---~~~la~~~~~ 381 (712)
+++|+| ++++|++++ ++.|.+|++.++.... ....|...|.+++|+|+ +++|++
T Consensus 154 -------------~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s---- 215 (450)
T 2vdu_B 154 -------------AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT---- 215 (450)
T ss_dssp -------------EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE----
T ss_pred -------------EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE----
Confidence 799999 999999998 9999999998776543 44456677888999988 878877
Q ss_pred CCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005140 382 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 461 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 461 (712)
++.++.+++|.+. +.. . . ...+.+
T Consensus 216 -~~~d~~i~vwd~~--~~~---------------------------------------------------~-~-~~~~~~ 239 (450)
T 2vdu_B 216 -SDRDEHIKISHYP--QCF---------------------------------------------------I-V-DKWLFG 239 (450)
T ss_dssp -EETTSCEEEEEES--CTT---------------------------------------------------C-E-EEECCC
T ss_pred -EcCCCcEEEEECC--CCc---------------------------------------------------e-e-eeeecC
Confidence 5566655554332 111 0 0 011337
Q ss_pred CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------------------------CCc
Q 005140 462 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------------------------GKQ 514 (712)
Q Consensus 462 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------------------------~~~ 514 (712)
|...|.+++|+ ++++|++++.|+ .|++||+.++. .+..+. ...
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~---~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDD---KIFAWDWKTGK------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSS---EEEEEETTTCC------EEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred CCCceEEEEEC-CCCEEEEEeCCC---eEEEEECCCCc------EeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 88999999999 999999999999 99999997654 222222 125
Q ss_pred eeEEEEccCCCeEEEEe-ccCCCceEEEEEC--Ccc---eeeee-ccccceeeEEECCCCCEEEEEEccc-eeccccEEE
Q 005140 515 ANALFWSPSGRFIVLAG-LKGFNGQLEFYNV--DEL---ETMAT-AEHFMATDVEWDPTGRYVATAVTSV-HEMENGFNI 586 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~-~~~~dg~v~iwd~--~~~---~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~-~~~d~~v~i 586 (712)
+..++|+|+|++|++++ . ++.|++|++ ..+ +.+.. ..+..+.+++|+|++.++++++... -..++.+.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~---d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEA---TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETT---CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECC---CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78999999999999998 5 899999999 444 44433 2237899999999643333333210 001456889
Q ss_pred EEec
Q 005140 587 WSFN 590 (712)
Q Consensus 587 w~~~ 590 (712)
|.+.
T Consensus 387 ~~~~ 390 (450)
T 2vdu_B 387 IEYN 390 (450)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=242.63 Aligned_cols=293 Identities=11% Similarity=0.162 Sum_probs=232.6
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+++++|++|++++.| +.|++||+.+++.+..+.+|...+. ++.|++ .++++++
T Consensus 124 ~~~~~g~~l~sg~~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~---~~l~s~~~ 177 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDD----------NTLKVWSAVTGKCLRTLVGHTGGVW-------------SSQMRD---NIIISGST 177 (445)
T ss_dssp EEEEETTEEEEEETT----------SCEEEEETTTCCEEEECCCCSSCEE-------------EEEEET---TEEEEEET
T ss_pred EEEEcCCEEEEEECC----------CcEEEEECCCCcEEEEEcCCCCCEE-------------EEEecC---CEEEEEeC
Confidence 355679999999999 9999999999999999999987763 577765 6888888
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
|+.|++|++.+++.+.....|...|.+++|+ +..|++ ++.++. |.+|++.+.+.+.....+......+.|
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s-----~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVS-----GSRDAT--LRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEE-----EETTSE--EEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEE-----EeCCCE--EEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 9999999999998887777788889999996 466777 556655 555666666655555545555556666
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+|.++++++.++. +.+|++.... ....+.+|...|.+++| ++.++++++.|+ .|++||+.++
T Consensus 248 -~~~~l~~~~~dg~---------i~iwd~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~---~i~i~d~~~~ 309 (445)
T 2ovr_B 248 -DGRRVVSGAYDFM---------VKVWDPETET---CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT---SIRVWDVETG 309 (445)
T ss_dssp -CSSCEEEEETTSC---------EEEEEGGGTE---EEEEECCCSSCEEEEEE--CSSEEEEEETTS---CEEEEETTTC
T ss_pred -CCCEEEEEcCCCE---------EEEEECCCCc---EeEEecCCCCceEEEEE--CCCEEEEEeCCC---eEEEEECCCC
Confidence 7899999998877 7888876432 23456688999999999 899999999999 9999999765
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec-----cccceeeEEECCCCCEEEEE
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA-----EHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-----~~~~v~~~~~spdg~~l~t~ 573 (712)
. .+..+.++.....+++++++++++++. ||.|++||+.+++.+... |...|++++|+ +++|+++
T Consensus 310 ~------~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 378 (445)
T 2ovr_B 310 N------CIHTLTGHQSLTSGMELKDNILVSGNA---DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS 378 (445)
T ss_dssp C------EEEEECCCCSCEEEEEEETTEEEEEET---TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred C------EEEEEcCCcccEEEEEEeCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEE
Confidence 4 566666554333445557889999998 999999999988877652 56789999996 6899999
Q ss_pred EccceeccccEEEEEec-Cceeeee-------cccceeeeEEecCCCCCCChhhHHH
Q 005140 574 VTSVHEMENGFNIWSFN-GKLLYRT-------LKDHFFQFLWRPRPPSFLTPEKEEE 622 (712)
Q Consensus 574 s~~~~~~d~~v~iw~~~-g~~~~~~-------~~~~i~~~~w~p~~~~l~s~~~d~~ 622 (712)
+. |+.|++|++. +..+... +.+.+++++|+|++..+++++.|+.
T Consensus 379 ~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 379 SD-----DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp ET-----TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred eC-----CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 99 9999999987 5554433 3468999999999999999888764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=267.20 Aligned_cols=389 Identities=11% Similarity=0.102 Sum_probs=252.8
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC----c---eEEeecccCcceeeeecCCC-
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----G---AAVWGGANTFNRLMRYAHPQ- 255 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~---i~iw~~~~~~~~~~~~~~~~- 255 (712)
+++..+. +.+.+|+. .+.....+..|...+.+++|||||++||+++.+ + |.+|+.. ++.......|..
T Consensus 26 ~iaf~~~-~~l~~~~~--~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~-~g~~~~lt~~~~~ 101 (1045)
T 1k32_A 26 RIIFVCC-DDLWEHDL--KSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGEIKRITYFSGK 101 (1045)
T ss_dssp EEEEEET-TEEEEEET--TTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTEEEECCCCCEE
T ss_pred EEEEEEC-CcEEEEEC--CCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC-CCCeEEcccCCCc
Confidence 4444443 56778887 334456788899999999999999999998653 2 7799988 554322223443
Q ss_pred e-------eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-------cC-------C--
Q 005140 256 V-------KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-------VG-------G-- 312 (712)
Q Consensus 256 v-------~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-------~~-------~-- 312 (712)
+ ..++|||||+.+++++.+.. ......|++|++.++........+..... .+ .
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQP----FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK 177 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSS----STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred ccccccccccccCCCCCEEEEEECCcCC----CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccc
Confidence 6 89999999996666664311 11124688899877664332221110000 00 0
Q ss_pred --CC-------------------CcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-ceecccccccccCeeeEEEC
Q 005140 313 --TG-------------------GVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 313 --~~-------------------~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s 369 (712)
.+ ...+ ...++.|++ + .+++++. ++.+.||.+.. +...... .....+..++||
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~~~~~~~~S 253 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFTDYYPRHLN 253 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCCSSCEEEEE
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEe-cCCCCcceeeEc
Confidence 00 0000 011467888 7 5555555 78889998653 2222222 122346678999
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-----------eeecceeEEEC-cCCCEEEEEEccccccccc
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-----------FSVSDCKMYWQ-SSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s-~~g~~l~~~~~~~~~~~~~ 437 (712)
|+|+.|++ + ....|++|+.... .+..... +......+.|+ |+|++|++....
T Consensus 254 pDG~~la~-----~---~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~------- 317 (1045)
T 1k32_A 254 TDGRRILF-----S---KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG------- 317 (1045)
T ss_dssp ESSSCEEE-----E---ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT-------
T ss_pred CCCCEEEE-----E---eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcC-------
Confidence 99999998 3 1346888877332 2221111 11235678999 999999988732
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCC-ceEEEEEeeCCCEEEEEEcCCCCCeEE-EEEeecccccCceeEEEEeCCCce
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKND-KIIAFAWEPKGHRFAVIHGDSPRPDIS-FYSMRTAQHAGRVSKLTTLKGKQA 515 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~-~v~~~~~sp~g~~l~~~~~d~~~~~v~-i~d~~~~~~~~~~~~~~~~~~~~v 515 (712)
.+|.+...... ...+..|.. .+.+++|+ +|+.|++++.+. .+. +|++.++.. ..+. .....+
T Consensus 318 -----~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~---~l~~~~d~~~~~~----~~l~-~~~~~~ 381 (1045)
T 1k32_A 318 -----QAFIQDVSGTY--VLKVPEPLRIRYVRRGGD-TKVAFIHGTREG---DFLGIYDYRTGKA----EKFE-ENLGNV 381 (1045)
T ss_dssp -----EEEEECTTSSB--EEECSCCSCEEEEEECSS-SEEEEEEEETTE---EEEEEEETTTCCE----EECC-CCCCSE
T ss_pred -----EEEEEcCCCCc--eEEccCCCcceEEeeeEc-CCCeEEEEECCC---ceEEEEECCCCCc----eEec-CCccce
Confidence 23333332222 234556777 89999999 999999998855 788 888865431 1222 123368
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccc-----eeccccEEEEE
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV-----HEMENGFNIWS 588 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~-----~~~d~~v~iw~ 588 (712)
..++|||||++|++++. ++.|++||+.+++.... .+...+.+++|||||++|++++... ...++.+++|+
T Consensus 382 ~~~~~SpDG~~la~~~~---~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVAND---RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeeEECCCCCEEEEECC---CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 89999999999999987 89999999998876554 5667789999999999999887610 00125899999
Q ss_pred ecCceeeee--cccceeeeEEecCCCCCCChhh
Q 005140 589 FNGKLLYRT--LKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 589 ~~g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
+.+..+... +...+..++|+|+|+.|+..+.
T Consensus 459 ~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 459 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 986544433 4466888999999998876654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=241.52 Aligned_cols=289 Identities=15% Similarity=0.279 Sum_probs=218.8
Q ss_pred cCCCcccceEEEcCCCcEEE-EEecCc-eEEeecccCcce---eeee-cCC-CeeEEEecC-CCCEEEEEcCCCCCCCcC
Q 005140 210 KRSYWTESFVQWSPLGTYLA-TVHRQG-AAVWGGANTFNR---LMRY-AHP-QVKLIDFSP-GEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~la-t~~~~~-i~iw~~~~~~~~---~~~~-~~~-~v~~i~~Sp-dg~~l~t~s~d~~~~~~~ 281 (712)
....+...+++++|+...++ +++.+| |.||+....... +..+ .|. .|.+++|+| ++++|++++.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d------- 103 (402)
T 2aq5_A 31 SQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED------- 103 (402)
T ss_dssp CCCCCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-------
T ss_pred ecCccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-------
Confidence 34456677899999987555 466777 889998633221 2222 244 599999999 99999999999
Q ss_pred CCccEEEEEEccCC-------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCcee
Q 005140 282 ANRVVINIFDVRTG-------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 282 ~~~~~I~iwd~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~ 352 (712)
+.|+|||+.++ +.+..+.+|...+. +++|+| ++ .+|++++ |+.|++||+.+++.
T Consensus 104 ---g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 104 ---CTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-------------IVAWHP-TAQNVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp ---SEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-------------EEEECS-SBTTEEEEEETTSCEEEEETTTTEE
T ss_pred ---CeEEEEEccCCCCccccCCceEEecCCCCeEE-------------EEEECc-CCCCEEEEEcCCCEEEEEECCCCCc
Confidence 99999999888 56777888877663 799999 98 6888888 99999999999887
Q ss_pred cccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-eeeeec-ceeEEECcCCCEEEEE-
Q 005140 353 IDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLFSVS-DCKMYWQSSGDYLAVK- 427 (712)
Q Consensus 353 ~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~s~~g~~l~~~- 427 (712)
+... ..|...|.+++|+|++++|++ ++.++ .|.+|++.+.+.+... ..+... ...+.|+|+|.+|+++
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 239 (402)
T 2aq5_A 167 VLTLGPDVHPDTIYSVDWSRDGALICT-----SCRDK--RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF 239 (402)
T ss_dssp EEEECTTTCCSCEEEEEECTTSSCEEE-----EETTS--EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE
T ss_pred cEEEecCCCCCceEEEEECCCCCEEEE-----EecCC--cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec
Confidence 7665 567788999999999999998 55555 4556677666655544 333333 5678899999999988
Q ss_pred --EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCce
Q 005140 428 --VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 428 --~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
..++. +.+|++.....+.....+ .|...+.+++|+|++++|++++ .|+ .|++|++.++.. ..
T Consensus 240 ~~~~d~~---------i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg---~i~i~d~~~~~~--~~ 304 (402)
T 2aq5_A 240 SRMSERQ---------VALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDS---SIRYFEITSEAP--FL 304 (402)
T ss_dssp CTTCCEE---------EEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCS---CEEEEEECSSTT--CE
T ss_pred cCCCCce---------EEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCC---eEEEEEecCCCc--ce
Confidence 34444 889998776555444444 5678899999999999998766 578 999999976542 12
Q ss_pred eEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 505 SKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 505 ~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
..+..+. ..++.+++|+|+|.++++ . ++.+++|++.++.+
T Consensus 305 ~~l~~~~~~~~v~~~~~sp~~~~~~s--~---~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 305 HYLSMFSSKESQRGMGYMPKRGLEVN--K---CEIARFYKLHERKC 345 (402)
T ss_dssp EEEEEECCSSCCSEEEECCGGGSCGG--G---TEEEEEEEEETTEE
T ss_pred EeecccccCCcccceEEeccccccee--c---ceeEEEEEcCCCcE
Confidence 2444443 457999999999998764 3 67999999986543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-25 Score=235.82 Aligned_cols=328 Identities=10% Similarity=0.128 Sum_probs=230.3
Q ss_pred ccceEE---EcCCCcEEEEEec--------------Cc-eEEeeccc---CcceeeeecCC-CeeEEEecCCCCEEEEEc
Q 005140 215 TESFVQ---WSPLGTYLATVHR--------------QG-AAVWGGAN---TFNRLMRYAHP-QVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 215 ~v~~v~---~Spdg~~lat~~~--------------~~-i~iw~~~~---~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s 272 (712)
.+..++ |+|++..++..+. ++ +.||.++. ....+..+... .+.+++|+|++.++++++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 141 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLL 141 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBT
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeC
Confidence 445566 7777766654332 22 24454431 22455555433 488999999777778877
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeee-----ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEE
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRD-----FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYE 346 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd 346 (712)
.+ +.|++||+.+++.++. +.+|...+. +++|++ ++.++++++ ++.|++|+
T Consensus 142 ~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 142 ED----------EGMDVLDINSGQTVRLSPPEKYKKKLGFVE-------------TISIPE-HNELWVSQMQANAVHVFD 197 (433)
T ss_dssp TS----------SSEEEEETTTCCEEEECCCHHHHTTCCEEE-------------EEEEGG-GTEEEEEEGGGTEEEEEE
T ss_pred CC----------CeEEEEECCCCeEeeecCcccccccCCcee-------------EEEEcC-CCEEEEEECCCCEEEEEE
Confidence 77 7899999999998873 345544442 689999 999999998 99999999
Q ss_pred cCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 347 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
+.+++.+.....+...+.+++|+|+++.+++. ++.+ ..|.+|++.+.+.+..... ......+.|+|+|+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~--~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 198 LKTLAYKATVDLTGKWSKILLYDPIRDLVYCS----NWIS--EDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp TTTCCEEEEEECSSSSEEEEEEETTTTEEEEE----ETTT--TEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEEcCCCCCeeEEEEcCCCCEEEEE----ecCC--CcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEE
Confidence 99888776665666779999999999988652 2233 3677788776655444332 223566789999999988
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE-EcCCCCCeEEEEEeecccccCcee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+....... ....+.+.+|++... .. .....|...+.+++|+|++++++++ +.++ .|++|++.++.
T Consensus 271 ~~~~~~~~-~~~dg~i~~~d~~~~-~~---~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~---~v~v~d~~~~~------ 336 (433)
T 3bws_A 271 AQFSASNQ-ESGGGRLGIYSMDKE-KL---IDTIGPPGNKRHIVSGNTENKIYVSDMCCS---KIEVYDLKEKK------ 336 (433)
T ss_dssp EEEESCTT-CSCCEEEEEEETTTT-EE---EEEEEEEECEEEEEECSSTTEEEEEETTTT---EEEEEETTTTE------
T ss_pred EECCCCcc-ccCCCeEEEEECCCC-cE---EeeccCCCCcceEEECCCCCEEEEEecCCC---EEEEEECCCCc------
Confidence 77432100 001123677776533 11 2222445688899999999877665 4566 99999997543
Q ss_pred EEEEeC-CCceeEEEEccCCCeEEEEeccCC------------CceEEEEECCcceeeeec-cccceeeEEECCCCCEEE
Q 005140 506 KLTTLK-GKQANALFWSPSGRFIVLAGLKGF------------NGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVA 571 (712)
Q Consensus 506 ~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~------------dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~ 571 (712)
.+..+. ...+.+++|+|+|++|++++.+.. ||.|++||+.+++.+... ....+.+++|+|+|++|+
T Consensus 337 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 416 (433)
T 3bws_A 337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLV 416 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEE
Confidence 333333 446899999999999998875321 479999999988877653 346789999999999999
Q ss_pred EEEccceeccccEEEEEecC
Q 005140 572 TAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~g 591 (712)
+++.. |+.+++|++++
T Consensus 417 ~~~~~----d~~i~v~~~~~ 432 (433)
T 3bws_A 417 ISDFL----DHQIRVYRRDG 432 (433)
T ss_dssp EEETT----TTEEEEEEETT
T ss_pred EEECC----CCeEEEEEecC
Confidence 88743 89999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=239.45 Aligned_cols=284 Identities=13% Similarity=0.280 Sum_probs=202.3
Q ss_pred CcccceEEEcCCC----------cEEEEEec-----CceEEeecc---------------------------cCcceeee
Q 005140 213 YWTESFVQWSPLG----------TYLATVHR-----QGAAVWGGA---------------------------NTFNRLMR 250 (712)
Q Consensus 213 ~~~v~~v~~Spdg----------~~lat~~~-----~~i~iw~~~---------------------------~~~~~~~~ 250 (712)
.|++.++.|.|+. .+|+.|.. ++|.|+++. +.......
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 3778889999975 46777653 236666432 01112334
Q ss_pred ecCCC-eeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccC----------CceeeeccCCCcccccCCCCCcCC
Q 005140 251 YAHPQ-VKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRT----------GKVMRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 251 ~~~~~-v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~----------g~~~~~~~~~~~~~~~~~~~~~~~ 318 (712)
+.|.+ |.+++|+|+ +.+|++++.+ +.|++|++.+ ...+..+.+|...+.
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~d----------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--------- 185 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPS----------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY--------- 185 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSS----------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC---------
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCC----------CcEEEEECCCcccccCccccCCCcEEecCCCCCeE---------
Confidence 45654 999999997 6899999999 9999999976 566777777776653
Q ss_pred CCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCcee-------cccccccccCeeeEEECC-CCCeEEEEeecCCCCCCC
Q 005140 319 VSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTL-------IDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQP 388 (712)
Q Consensus 319 ~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~ 388 (712)
+++|+| ++. +|++++ ||.|++|++.++.. ......|...|.+++|+| ++.+|++ ++.++.
T Consensus 186 ----~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-----~~~dg~ 255 (430)
T 2xyi_A 186 ----GLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-----VADDQK 255 (430)
T ss_dssp ----CEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE-----EETTSE
T ss_pred ----EEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE-----EeCCCe
Confidence 699999 988 999888 99999999986332 112224555688888888 4556655 444444
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEE
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 468 (712)
+++ |++.. .........+.+|...|++
T Consensus 256 i~i--~d~~~---------------------------------------------------~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 256 LMI--WDTRN---------------------------------------------------NNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp EEE--EETTC---------------------------------------------------SCSSSCSEEEECCSSCEEE
T ss_pred EEE--EECCC---------------------------------------------------CCCCcceeEeecCCCCeEE
Confidence 333 33321 1100011223467899999
Q ss_pred EEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCceeEEEEccCCC-eEEEEeccCCCceEEEEEC
Q 005140 469 FAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 469 ~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~ 544 (712)
++|+|++. .|++++.++ .|++||+++... ++..+ +...+.+++|+|+|+ +|++++. ||.|+|||+
T Consensus 283 i~~~p~~~~~l~tg~~dg---~v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~---d~~i~iwd~ 351 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADK---TVALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSGT---DRRLHVWDL 351 (430)
T ss_dssp EEECSSCTTEEEEEETTS---EEEEEETTCTTS-----CSEEEECCSSCEEEEEECSSCTTEEEEEET---TSCCEEEEG
T ss_pred EEeCCCCCCEEEEEeCCC---eEEEEeCCCCCC-----CeEEeecCCCCEEEEEECCCCCCEEEEEeC---CCcEEEEeC
Confidence 99999997 588888899 999999976432 23333 345799999999996 5777877 999999999
Q ss_pred Ccc--------------eeeee--ccccceeeEEECCCCC-EEEEEEccceeccccEEEEEecCcee
Q 005140 545 DEL--------------ETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 545 ~~~--------------~~~~~--~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
... +++.. .|...|++++|+|+++ +|++++. |+.|+||++....+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-----DNIMQVWQMAENVY 413 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-----TSEEEEEEECHHHH
T ss_pred CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-----CCCEEEeEcccccc
Confidence 862 33332 5667899999999999 8888888 99999999975543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=229.76 Aligned_cols=268 Identities=12% Similarity=0.139 Sum_probs=205.1
Q ss_pred cceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 245 FNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 245 ~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
.+....+ .|. .|.+++| |++++|++++.+ +.|++||+.++.....+..|...+.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~d----------g~v~vw~~~~~~~~~~~~~~~~~v~------------- 63 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRD----------GTVRLWSKDDQWLGTVVYTGQGFLN------------- 63 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETT----------SEEEEEEESSSEEEEEEEECSSCEE-------------
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcC----------CcEEEEECCCCEEEEEeecCCccEE-------------
Confidence 3444444 244 5999999 999999999999 9999999999988888888876653
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCc---eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESF---TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+++|+| ++++|++++ ++.|++|++... ..+.....|...|.+++| ++.+|++ ++.++.+++|
T Consensus 64 ~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~-----~~~d~~i~~~------ 129 (313)
T 3odt_A 64 SVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVIS-----GSWDKTAKVW------ 129 (313)
T ss_dssp EEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEE-----EETTSEEEEE------
T ss_pred EEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEE-----EeCCCCEEEE------
Confidence 799999 999999999 999999998754 233333345556777777 4555655 4444444433
Q ss_pred ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCE
Q 005140 399 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHR 477 (712)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~ 477 (712)
+ .. .....+..|...+.+++|+| ++++
T Consensus 130 -----------------------------------------------d---~~--~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 130 -----------------------------------------------K---EG--SLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp -----------------------------------------------E---TT--EEEEEEECCSSCEEEEEEEETTTTE
T ss_pred -----------------------------------------------c---CC--cEEEecccCCCceeEEEEccCCCCE
Confidence 2 00 01123446789999999999 9999
Q ss_pred EEEEEcCCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-- 552 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-- 552 (712)
|++++.++ .|++||... ....+ ....+.+++|+|++. +++++. +|.|++||+.+++.+..
T Consensus 158 l~~~~~d~---~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 158 FLTASADK---TIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEETTS---CEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCC---CEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEEEEECCchhhhhhhh
Confidence 99999999 999999422 33333 344789999999998 888887 99999999998887765
Q ss_pred ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 553 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.|...+++++|+|+| .|++++. |+.+++|++. +..+... +...+.+++|+|++. +++++.|+.|+
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGE-----DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEET-----TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred cCCceEEEEEEecCC-CEEEEec-----CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence 577899999999999 5889998 9999999986 4444433 557899999999998 66788887765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=235.05 Aligned_cols=320 Identities=12% Similarity=0.180 Sum_probs=205.1
Q ss_pred ccchhhccCC-CCCceEEEEECCeeEEEecCCCCCCCcccc-------------cCCCcccceEEEcC-CCcEEEEEecC
Q 005140 170 ENLQKWLTDE-KARDQFVIRSGTDTEVLWNDARHLKPEPVY-------------KRSYWTESFVQWSP-LGTYLATVHRQ 234 (712)
Q Consensus 170 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-------------~~~~~~v~~v~~Sp-dg~~lat~~~~ 234 (712)
..+.+..++| ++ ..+++.+.++.+.+|+.. .......+ .+|...|++++|+| ++.+|++++.+
T Consensus 44 ~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 44 GGINTLDIEPVEG-RYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SCEEEEEECTTTC-CEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CcEEEEEEecCCC-CEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 3455566667 44 366777889999999984 33333333 25999999999999 88899999999
Q ss_pred c-eEEeecccCcceeeeecCCC-eeEEEecCC---CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc
Q 005140 235 G-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 309 (712)
Q Consensus 235 ~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~ 309 (712)
+ +++|+.. +...+..+.+.. +.++.|+|. +.+|++++.+ +.|++||+.+++.+..+..|...+.
T Consensus 122 ~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 122 KTLKVWDTN-TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG----------PKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp SEEEEEETT-TTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS----------SSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CeEEEeeCC-CCccceeccCCCceeeeEeecCCCCCcEEEEEcCC----------CeEEEEeCCCcceeeeecCCCCcEE
Confidence 8 8899999 777777776554 999999985 4599999999 9999999999999999988877664
Q ss_pred cCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCce-eccc---------------ccccccCeeeEEECCC
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFT-LIDK---------------KSLKVENVMDFSWSPT 371 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~-~~~~---------------~~~~~~~v~~~~~sp~ 371 (712)
+++|+| ++. +|++++ |+.|++||+.++. .+.. ...+...|.+++|+|+
T Consensus 191 -------------~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 191 -------------AVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp -------------EEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred -------------EEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 799999 998 477777 9999999997654 1111 1245567999999999
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 451 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 451 (712)
+++|++ ++.++.+++ |++.+.+...........
T Consensus 257 ~~~l~~-----~~~dg~i~v--wd~~~~~~~~~~~~~~~~---------------------------------------- 289 (408)
T 4a11_B 257 GLHLLT-----VGTDNRMRL--WNSSNGENTLVNYGKVCN---------------------------------------- 289 (408)
T ss_dssp SSEEEE-----EETTSCEEE--EETTTCCBCCCCCCCCCC----------------------------------------
T ss_pred CCEEEE-----ecCCCeEEE--EECCCCccceeccccccc----------------------------------------
Confidence 999998 666666554 444433221110000000
Q ss_pred cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEE
Q 005140 452 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVL 529 (712)
Q Consensus 452 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~ 529 (712)
.....+........+..+++++.++ .|++|++.++. .+..+.++ .|++++|+|+|++|++
T Consensus 290 ---------~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 290 ---------NSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGE------QITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp ---------CCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCC------EEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ---------cccccceeEEecCCCceEEEEecCC---EEEEEECcCCc------ceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 0001111111123455666777777 99999997654 56666544 7899999999999999
Q ss_pred EeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCE-EEEEEccceeccccEEEEEec
Q 005140 530 AGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~-l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++. ||.|++|++.+++.+....... ....++|.... +.+++. ++.+++|+..
T Consensus 352 ~~~---dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~W~~~ 404 (408)
T 4a11_B 352 GSR---DCNILAWVPSLYEPVPDDDETT-TKSQLNPAFEDAWSSSDE-----EGGTSAWSHP 404 (408)
T ss_dssp EET---TSCEEEEEECC---------------------------------------------
T ss_pred ECC---CCeEEEEeCCCCCccCCCCceE-eccccccccceeecccCc-----cCceeecCCc
Confidence 998 9999999999887765432211 22334443333 333444 8999999754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=229.27 Aligned_cols=267 Identities=13% Similarity=0.142 Sum_probs=197.1
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEE-EEEecCc-eEEeecccCcceeeeecCC-CeeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYL-ATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~l-at~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~ 260 (712)
.|+..+.++.+.+|+. ..++....+..|. .+.+++|||+|++| ++++.++ |++||.. +++.+..+.+. .+.+++
T Consensus 4 l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDV-TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATVPAGSSPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEET-TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEEECSSSEEEEE
T ss_pred EEEEcCCCCEEEEEEC-CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC-CCeEEEEEECCCCccceE
Confidence 4556667889999998 4556666666665 47999999999987 5665666 8899998 77777777543 699999
Q ss_pred ecCCCCEEEEE-cCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE-EEec
Q 005140 261 FSPGEKYLVTY-SSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF-AKLG 338 (712)
Q Consensus 261 ~Spdg~~l~t~-s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l-a~~~ 338 (712)
|+|+|++|+++ +.+ +.|++||+.+++.+..+..+.... .++|+| ++++| ++++
T Consensus 81 ~spdg~~l~~~~~~~----------~~v~v~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~l~~~~~ 135 (391)
T 1l0q_A 81 VSPDGKQVYVTNMAS----------STLSVIDTTSNTVAGTVKTGKSPL--------------GLALSP-DGKKLYVTNN 135 (391)
T ss_dssp ECTTSSEEEEEETTT----------TEEEEEETTTTEEEEEEECSSSEE--------------EEEECT-TSSEEEEEET
T ss_pred ECCCCCEEEEEECCC----------CEEEEEECCCCeEEEEEeCCCCcc--------------eEEECC-CCCEEEEEeC
Confidence 99999988654 456 899999999999888887665443 689999 99977 5666
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
++.|.+||+.+++.+..... ...+.+++|+|+++.|++. ++.+ ..|.+|++.+.+.+
T Consensus 136 ~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~----~~~~--~~v~~~d~~~~~~~--------------- 193 (391)
T 1l0q_A 136 GDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVA----NFDS--MSISVIDTVTNSVI--------------- 193 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEE----ETTT--TEEEEEETTTTEEE---------------
T ss_pred CCCEEEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEE----eCCC--CEEEEEECCCCeEE---------------
Confidence 99999999998877654433 3457889999999887542 2233 33444554322100
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc---CCCCCeEEEEE
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG---DSPRPDISFYS 494 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~---d~~~~~v~i~d 494 (712)
..+ .+...+.+++|+|+|++|++++. ++ .|++||
T Consensus 194 ---------------------------------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~---~v~~~d 230 (391)
T 1l0q_A 194 ---------------------------------------DTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFN---TVSMID 230 (391)
T ss_dssp ---------------------------------------EEE-ECSSEEEEEEECTTSSEEEEEEECSSCC---EEEEEE
T ss_pred ---------------------------------------EEE-ecCCCccceEECCCCCEEEEEecCcCCC---cEEEEE
Confidence 001 22557788999999999999884 55 999999
Q ss_pred eecccccCceeEEEEeC-CCceeEEEEccCCCeEEEE-eccCCCceEEEEECCcceeeee
Q 005140 495 MRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLA-GLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~-~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+.++. .+..+. ...+.+++|+|+|++|+++ +. ++.|++||+.+++++..
T Consensus 231 ~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~---d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 231 TGTNK------ITARIPVGPDPAGIAVTPDGKKVYVALSF---XNTVSVIDTATNTITAT 281 (391)
T ss_dssp TTTTE------EEEEEECCSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred CCCCe------EEEEEecCCCccEEEEccCCCEEEEEcCC---CCEEEEEECCCCcEEEE
Confidence 97654 444444 3357889999999988544 55 89999999998877654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=233.45 Aligned_cols=278 Identities=12% Similarity=0.171 Sum_probs=207.3
Q ss_pred Ccceeeee-cC-CCeeEEEecCC---CCEEEEEcCCCCCCCcCCCccEEEEEEccC-Ccee-eeccCCCcccccCCCCCc
Q 005140 244 TFNRLMRY-AH-PQVKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVM-RDFKGSADEFAVGGTGGV 316 (712)
Q Consensus 244 ~~~~~~~~-~~-~~v~~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~-~~~~~~~~~~~~~~~~~~ 316 (712)
....+..+ .| ..|.+++|+|+ |++|++++.+ +.|+|||+.+ +..+ ..+.+|...+.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~h~~~v~------- 90 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA----------NDVRCWEVQDSGQTIPKAQQMHTGPVL------- 90 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETT----------SEEEEEEECTTSCEEEEEEEECSSCEE-------
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCC----------CcEEEEEcCCCCceeEEEeccccCCEE-------
Confidence 33344433 34 45999999999 6999999999 9999999987 5555 67777877664
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEE--CCCCCeEEEEeecCCCCCCCeEEEE
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW--SPTDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
+++|+| ++++|++++ |+.|++|++.++..+. ...|...|.+++| +|++.+|++ ++.++. |.+
T Consensus 91 ------~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~--i~v 155 (368)
T 3mmy_A 91 ------DVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMT-----GSWDKT--LKF 155 (368)
T ss_dssp ------EEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEE-----EETTSE--EEE
T ss_pred ------EEEECc-CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEE-----ccCCCc--EEE
Confidence 799999 999999998 9999999999888664 3357778999999 999999998 555655 556
Q ss_pred EecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 394 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
|++.+.+.+....... .. +.+...+..++++..++. +.+|++........... ..+...+.++++.+
T Consensus 156 wd~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (368)
T 3mmy_A 156 WDTRSSNPMMVLQLPE-RC--YCADVIYPMAVVATAERG---------LIVYQLENQPSEFRRIE-SPLKHQHRCVAIFK 222 (368)
T ss_dssp ECSSCSSCSEEEECSS-CE--EEEEEETTEEEEEEGGGC---------EEEEECSSSCEEEEECC-CSCSSCEEEEEEEE
T ss_pred EECCCCcEEEEEecCC-Cc--eEEEecCCeeEEEeCCCc---------EEEEEeccccchhhhcc-ccccCCCceEEEcc
Confidence 6666655544433222 22 233444567777777766 78888876543322221 13455667777777
Q ss_pred CCCE----EEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--------------ceeEEEEccCCCeEEEEeccCC
Q 005140 474 KGHR----FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--------------QANALFWSPSGRFIVLAGLKGF 535 (712)
Q Consensus 474 ~g~~----l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--------------~v~~l~~spdg~~l~~~~~~~~ 535 (712)
++.. +++++.++ .|++|+++...... .+..+..+ .+++++|+|+|++|++++.
T Consensus 223 ~~~~~~~~~~~~~~dg---~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--- 293 (368)
T 3mmy_A 223 DKQNKPTGFALGSIEG---RVAIHYINPPNPAK---DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS--- 293 (368)
T ss_dssp CTTSCEEEEEEEETTS---EEEEEESSCSCHHH---HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET---
T ss_pred cCCCCCCeEEEecCCC---cEEEEecCCCCccc---cceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc---
Confidence 6655 99999999 99999997653210 12222222 5899999999999999998
Q ss_pred CceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 536 NGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 536 dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
||.|++||+.+++.+.. .|...|++++|+|+|++|++++.
T Consensus 294 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 294 DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp TSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred CCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 99999999999888765 56689999999999999999998
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=236.59 Aligned_cols=266 Identities=15% Similarity=0.252 Sum_probs=201.4
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+|...|+|++| +|++||+|+.++ |++||.. +++.+..+. |. .|.+++| ++++|++|+.| +.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d----------g~ 194 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQY--DERVIITGSSD----------ST 194 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEEC--CSSEEEEEETT----------SC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC----------Ce
Confidence 456667777766 899999999999 8899998 777776663 44 4999998 88999999999 99
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec---ccccccccC
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI---DKKSLKVEN 362 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~---~~~~~~~~~ 362 (712)
|++||+.+++.+..+.+|...+. ++.|++ .++++++ |+.|++||+.++... .....|...
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVL-------------HLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEE-------------EEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEE-------------EEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc
Confidence 99999999999999998877663 577765 5888888 999999999876544 223345556
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
|.+++| ++++|++ ++.++.+++ |++.+.+
T Consensus 259 v~~~~~--~~~~l~s-----~~~dg~i~v--wd~~~~~------------------------------------------ 287 (435)
T 1p22_A 259 VNVVDF--DDKYIVS-----ASGDRTIKV--WNTSTCE------------------------------------------ 287 (435)
T ss_dssp EEEEEE--ETTEEEE-----EETTSEEEE--EETTTCC------------------------------------------
T ss_pred EEEEEe--CCCEEEE-----EeCCCeEEE--EECCcCc------------------------------------------
Confidence 777776 5566666 444444333 2322111
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFW 520 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~ 520 (712)
....+.+|...|.+++| +++++++++.|+ .|++||++++. .+..+.++ .+.+++|
T Consensus 288 ------------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg---~i~iwd~~~~~------~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 288 ------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA------CLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ------------EEEEEECCSSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCC------EEEEECCCSSCEEEEEC
T ss_pred ------------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCC---eEEEEECCCCC------EEEEEeCCcCcEEEEEe
Confidence 11234467888998888 578999999999 99999997654 56666654 6788888
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcce---------eee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELE---------TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~---------~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
++.+|++++. ||.|++||+.++. .+. ..|...|++++| +|++|++++. |+.|+||++
T Consensus 345 --~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----Dg~i~iwd~ 412 (435)
T 1p22_A 345 --DNKRIVSGAY---DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH-----DDTILIWDF 412 (435)
T ss_dssp --CSSEEEEEET---TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS-----SSEEEEEC-
T ss_pred --cCCEEEEEeC---CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC-----CCEEEEEEC
Confidence 7899999998 9999999997654 333 367788999999 7889999999 999999998
Q ss_pred cCc
Q 005140 590 NGK 592 (712)
Q Consensus 590 ~g~ 592 (712)
...
T Consensus 413 ~~~ 415 (435)
T 1p22_A 413 LND 415 (435)
T ss_dssp ---
T ss_pred CCC
Confidence 754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=231.56 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=205.5
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
..|.+++|+|++++|++++.+ +.|+||++.++. .+..+..|...+. +++|+| +
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d----------~~v~iw~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 67 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWD----------GSLTVYKFDIQAKNVDLLQSLRYKHPLL-------------CCNFID-N 67 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETT----------SEEEEEEEETTTTEEEEEEEEECSSCEE-------------EEEEEE-S
T ss_pred CcEEEEEEcCCCCEEEEEcCC----------CeEEEEEeCCCCccccceeeeecCCceE-------------EEEECC-C
Confidence 359999999999999999999 999999998887 3444556665553 799999 9
Q ss_pred CC-EEEEec-CCeEEEEEc-CCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 331 DK-YFAKLG-KNMISVYET-ESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 331 g~-~la~~~-d~~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++ +|++++ ++.|++|++ .++.. ..... |...|.+++|+| +..|++ ++.++.+++| ++.+..
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s-----~~~d~~i~iw--d~~~~~----- 133 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIA-----ASWDGLIEVI--DPRNYG----- 133 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEE-----EETTSEEEEE--CHHHHT-----
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEE-----EcCCCeEEEE--cccccc-----
Confidence 99 999988 999999999 87655 33345 777899999999 888888 6666655554 332100
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
+....... .+. ..+ .|...|.+++|+|++ +++++.++
T Consensus 134 ---------------~~~~~~~~-----------------------~~~--~~~-~~~~~v~~~~~~~~~--l~~~~~d~ 170 (342)
T 1yfq_A 134 ---------------DGVIAVKN-----------------------LNS--NNT-KVKNKIFTMDTNSSR--LIVGMNNS 170 (342)
T ss_dssp ---------------TBCEEEEE-----------------------SCS--SSS-SSCCCEEEEEECSSE--EEEEESTT
T ss_pred ---------------cccccccC-----------------------Cee--eEE-eeCCceEEEEecCCc--EEEEeCCC
Confidence 00000000 000 011 257889999999987 88899998
Q ss_pred CCCeEEEEEeec-ccccCceeEEEEeCCCceeEEEEcc-CCCeEEEEeccCCCceEEEEECCcc------eeeee--ccc
Q 005140 486 PRPDISFYSMRT-AQHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLKGFNGQLEFYNVDEL------ETMAT--AEH 555 (712)
Q Consensus 486 ~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~iwd~~~~------~~~~~--~~~ 555 (712)
.|++|++++ +... ...........+.+++|+| +|+++++++. +|.|++|+++.. +.... .|.
T Consensus 171 ---~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 171 ---QVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLPKEQEGYACSSI---DGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp ---EEEEEESSCCTTCC--CEEEECSCSSCEEEEEECSGGGCEEEEEET---TSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred ---eEEEEECCcccccc--ceeeecCCCCceeEEEECCCCCCEEEEEec---CCcEEEEEEcCCCcccccccceeeeccc
Confidence 999999976 4321 1122222344789999999 9999999998 999999999865 33332 332
Q ss_pred ---------cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--c-ccceeeeEEecCCCCCCChhhHHH
Q 005140 556 ---------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--L-KDHFFQFLWRPRPPSFLTPEKEEE 622 (712)
Q Consensus 556 ---------~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~-~~~i~~~~w~p~~~~l~s~~~d~~ 622 (712)
..|++++|+|+|++|++++. |+.|++|++. +..+... + ...|.+++ |++.+|++++.|+.
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEET-----TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecC-----CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 38999999999999999999 9999999987 5555443 4 67899988 99999999999987
Q ss_pred H
Q 005140 623 I 623 (712)
Q Consensus 623 i 623 (712)
+
T Consensus 316 ~ 316 (342)
T 1yfq_A 316 F 316 (342)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-24 Score=219.42 Aligned_cols=266 Identities=19% Similarity=0.264 Sum_probs=198.7
Q ss_pred eEEEEECCeeEEEecCCCCCCCccc--ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPV--YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~ 260 (712)
.+++ +.|+++.+|+. ..++.... +.+|...|++++|+|+|++||+|+.|+ |+||+.. +++.+..+........+
T Consensus 38 ~lAv-g~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 38 VLAV-ALDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNMTSHSARVGS 114 (318)
T ss_dssp EEEE-EETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEE
T ss_pred EEEE-EeCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-CceeEEEecCccceEEE
Confidence 4444 45888999998 45555544 457888899999999999999999999 8899999 88877777544444456
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+++++..|++++.+ +.+++|+..++ ..+..+.+|...+. .+.|++ ++++|++++
T Consensus 115 ~~~~~~~l~s~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~s~~~ 170 (318)
T 4ggc_A 115 LSWNSYILSSGSRS----------GHIHHHDVRVAEHHVATLSGHSQEVC-------------GLRWAP-DGRHLASGGN 170 (318)
T ss_dssp EEEETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EEEECT-TSSEEEEEET
T ss_pred eecCCCEEEEEecC----------CceEeeecCCCceeEEEEcCccCceE-------------EEEEcC-CCCEEEEEec
Confidence 67788999999999 99999998766 45667777766553 689999 999999998
Q ss_pred CCeEEEEEcCCceeccc----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 339 KNMISVYETESFTLIDK----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
|+.|++||+.+++.... ...+...|..+.++|++..++.... ++.++.+ .+|+......
T Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~i--~lwd~~~~~~------------- 233 (318)
T 4ggc_A 171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRHI--RIWNVCSGAC------------- 233 (318)
T ss_dssp TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE--CTTTCEE--EEEETTTCCE-------------
T ss_pred CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe--cCCCCEE--EEEecccccc-------------
Confidence 99999999987653322 2234456889999998766554321 2233333 3333221110
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc--CCCCCeEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG--DSPRPDISF 492 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~--d~~~~~v~i 492 (712)
.....+...+..++|+|++..++++++ |+ .|++
T Consensus 234 ------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~---~i~i 268 (318)
T 4ggc_A 234 ------------------------------------------LSAVDAHSQVCSILWSPHYKELISGHGFAQN---QLVI 268 (318)
T ss_dssp ------------------------------------------EEEEECSSCEEEEEEETTTTEEEEEECTTTC---CEEE
T ss_pred ------------------------------------------cccccceeeeeeeeecccccceEEEEEcCCC---EEEE
Confidence 011134677889999999999988874 66 8999
Q ss_pred EEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 493 YSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
||+.++. ++..+.+| .|++++|+|+|++|++++. ||+|+|||+...
T Consensus 269 wd~~~~~------~~~~l~gH~~~V~~l~~spdg~~l~S~s~---D~~v~iWd~~~~ 316 (318)
T 4ggc_A 269 WKYPTMA------KVAELKGHTSRVLSLTMSPDGATVASAAA---DETLRLWRCFEL 316 (318)
T ss_dssp EETTTCC------EEEEECCCSSCEEEEEECTTSSCEEEEET---TTEEEEECCSCC
T ss_pred EECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEECCCC
Confidence 9997655 67777765 7999999999999999998 999999998754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=236.99 Aligned_cols=267 Identities=15% Similarity=0.181 Sum_probs=204.7
Q ss_pred EECCeeEEEecCCCCC---CCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCc-------ceeeee-cCC
Q 005140 188 RSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF-------NRLMRY-AHP 254 (712)
Q Consensus 188 ~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~-------~~~~~~-~~~ 254 (712)
.++++.+.+|+....+ .....+.+|...|++++|+| ++++||+++.|+ |+||++. +. ..+..+ .|.
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~-~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC-TTCCSSCBCSCSEEEECCS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc-CCCCccccCCceEEecCCC
Confidence 4668899999984433 34456789999999999999 999999999999 8899998 44 333333 244
Q ss_pred -CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec--cCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 255 -QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 255 -~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|.+++|+|++ .+|++++.| +.|++||+.+++.+..+ ..|...+. +++|+| +
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 187 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCD----------NVILVWDVGTGAAVLTLGPDVHPDTIY-------------SVDWSR-D 187 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETT----------SCEEEEETTTTEEEEEECTTTCCSCEE-------------EEEECT-T
T ss_pred CeEEEEEECcCCCCEEEEEcCC----------CEEEEEECCCCCccEEEecCCCCCceE-------------EEEECC-C
Confidence 59999999998 699999999 99999999999999988 67766653 799999 9
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccc-cccccC-eeeEEECCCCCeEEEEeecCCC-CCCCeEEEEEecCCccc-eeee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKK-SLKVEN-VMDFSWSPTDPIISLFVPELGG-GNQPARVSLVQIPSKEE-LRQK 405 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~sp~~~~la~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~ 405 (712)
+++|++++ |+.|++||+.++..+... ..|... +..+.|+|++.+|++ +. ......|.+|++..... +...
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT-----GFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE-----EECTTCCEEEEEEETTBCSSCSEEE
T ss_pred CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE-----eccCCCCceEEEEcCccccCCceEE
Confidence 99999998 999999999988877655 445544 899999999999987 41 13445666677665442 2222
Q ss_pred e-eeeecceeEEECcCCCEEEEEE-cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 406 N-LFSVSDCKMYWQSSGDYLAVKV-DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 406 ~-~~~~~~~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
. .+......+.|+|+|.+|++.. .++. +.+|++.........+....|...|.+++|+|++.++++ .
T Consensus 263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~---------i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSS---------IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp ECCCCSSCEEEEEETTTTEEEEEETTCSC---------EEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred eccCCCceeEEEEcCCCCEEEEEEcCCCe---------EEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 2 2344566789999999997655 4655 899999875532333433346799999999999998775 4
Q ss_pred CCCCCeEEEEEeecc
Q 005140 484 DSPRPDISFYSMRTA 498 (712)
Q Consensus 484 d~~~~~v~i~d~~~~ 498 (712)
++ .+++|++.++
T Consensus 332 ~~---~~~~~~l~~~ 343 (402)
T 2aq5_A 332 CE---IARFYKLHER 343 (402)
T ss_dssp TE---EEEEEEEETT
T ss_pred ce---eEEEEEcCCC
Confidence 55 8999999764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=231.70 Aligned_cols=272 Identities=10% Similarity=0.055 Sum_probs=194.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccc-------------c--------
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFA-------------V-------- 310 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~-------------~-------- 310 (712)
.+.+++|||+|++|++++ + +.|++||+.+|+ .+..+..+..... .
T Consensus 6 p~~~v~~s~dg~~l~~~~-~----------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAII-K----------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK 74 (450)
T ss_dssp CCCEEEECSSSSEEEEEE-T----------TEEEEEEEETTTEEEEEEEEECCC--------------------------
T ss_pred cEEEEEecCCCCEEEEEe-C----------CeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccc
Confidence 478999999999777665 4 589999999999 7766664432000 0
Q ss_pred --------------------CCC-CCcCCCCcCeEEecCCCCCEE-EEec-CCeEEEEEcC--Cceeccccc--ccccCe
Q 005140 311 --------------------GGT-GGVAGVSWPVFRWGGGKDKYF-AKLG-KNMISVYETE--SFTLIDKKS--LKVENV 363 (712)
Q Consensus 311 --------------------~~~-~~~~~~~~~~~~~s~~dg~~l-a~~~-d~~i~iwd~~--~~~~~~~~~--~~~~~v 363 (712)
+.. .+..+ ...+++|+| ++++| ++++ |+.|++|++. ++..+.... .+...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYS-YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp -------------------------CCCC-CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred ccccCcCccccccCccccCCCCCCCccCC-ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 000 00000 112689999 99996 7777 9999999998 776665443 234569
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|+|++++|++ ++. .+.++.|++........
T Consensus 153 ~~~~~sp~~~~l~~-----~~~--~g~v~~~~~~~~~~~~~--------------------------------------- 186 (450)
T 2vdu_B 153 NAISIAEDDTTVII-----ADK--FGDVYSIDINSIPEEKF--------------------------------------- 186 (450)
T ss_dssp EEEEECTTSSEEEE-----EET--TSEEEEEETTSCCCSSC---------------------------------------
T ss_pred eEEEEcCCCCEEEE-----EeC--CCcEEEEecCCcccccc---------------------------------------
Confidence 99999999999988 433 34456665533221100
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeC---CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eC--CCceeE
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPK---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LK--GKQANA 517 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~--~~~v~~ 517 (712)
....+.+|...|.+++|+|+ +++|++++.|+ .|++||+.++. .+.. +. ...+.+
T Consensus 187 -----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~---~i~vwd~~~~~------~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 187 -----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE---HIKISHYPQCF------IVDKWLFGHKHFVSS 246 (450)
T ss_dssp -----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS---CEEEEEESCTT------CEEEECCCCSSCEEE
T ss_pred -----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC---cEEEEECCCCc------eeeeeecCCCCceEE
Confidence 00113367889999999999 99999999998 99999997654 2333 32 347899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---------------------------ccceeeEEECCCCCEE
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------------------HFMATDVEWDPTGRYV 570 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---------------------------~~~v~~~~~spdg~~l 570 (712)
++|+ +|++|++++. |+.|++||+.+++.+.... ...+.+++|+|+|++|
T Consensus 247 ~~~s-d~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGG---DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEC-STTEEEEEES---SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEEC-CCCEEEEEeC---CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 9999 9999999998 9999999999887665422 2457899999999999
Q ss_pred EEEE-ccceeccccEEEEEe--c-C---ceeeee-cccceeeeEEecCCCCC
Q 005140 571 ATAV-TSVHEMENGFNIWSF--N-G---KLLYRT-LKDHFFQFLWRPRPPSF 614 (712)
Q Consensus 571 ~t~s-~~~~~~d~~v~iw~~--~-g---~~~~~~-~~~~i~~~~w~p~~~~l 614 (712)
++++ . ++.|+||++ . + ..+... ....+.+++|+|++.++
T Consensus 323 ~~~~~~-----d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 323 AFFVEA-----TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQV 369 (450)
T ss_dssp EEEETT-----CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEE
T ss_pred EEEECC-----CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEE
Confidence 9999 6 899999999 3 3 222222 22789999999964333
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=220.83 Aligned_cols=269 Identities=14% Similarity=0.124 Sum_probs=197.4
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+.++++++.++ |++||.. +++.+..+. +..+.+++|+|+|++| ++++.+ +.|++||+.+++.+..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d----------~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIPVGSNPMGAVISPDGTKVYVANAHS----------NDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGG----------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEeecCCCcceEEECCCCCEEEEECCCC----------CeEEEEECCCCeEEEEE
Confidence 34677788787 8899999 777777665 5569999999999987 566677 89999999999999888
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..+.... .++|+| ++++|+.++ ++.|.+||+.+++.+.... ....+.+++|+|+++.|++.
T Consensus 71 ~~~~~v~--------------~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~- 133 (391)
T 1l0q_A 71 PAGSSPQ--------------GVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVT- 133 (391)
T ss_dssp ECSSSEE--------------EEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEE-
T ss_pred ECCCCcc--------------ceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEE-
Confidence 7766333 699999 999886554 7999999999887765443 33468899999999987542
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
++.++ .|.+|+..+.+.+ ..+
T Consensus 134 ---~~~~~--~v~~~d~~~~~~~------------------------------------------------------~~~ 154 (391)
T 1l0q_A 134 ---NNGDK--TVSVINTVTKAVI------------------------------------------------------NTV 154 (391)
T ss_dssp ---ETTTT--EEEEEETTTTEEE------------------------------------------------------EEE
T ss_pred ---eCCCC--EEEEEECCCCcEE------------------------------------------------------EEE
Confidence 33333 4444544322110 011
Q ss_pred cCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCc
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNG 537 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg 537 (712)
.. ...+.+++|+|+|+++++++ .++ .|++||+.++. .+..+. ...+.+++|+|+|++|++++.+..++
T Consensus 155 ~~-~~~~~~~~~~~dg~~l~~~~~~~~---~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 155 SV-GRSPKGIAVTPDGTKVYVANFDSM---SISVIDTVTNS------VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EC-CSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTE------EEEEEECSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ec-CCCcceEEECCCCCEEEEEeCCCC---EEEEEECCCCe------EEEEEecCCCccceEECCCCCEEEEEecCcCCC
Confidence 11 34568899999999886554 456 89999997654 333333 34678999999999999887321289
Q ss_pred eEEEEECCcceeeeec-cccceeeEEECCCCCEEEEE-EccceeccccEEEEEec-Cceee
Q 005140 538 QLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATA-VTSVHEMENGFNIWSFN-GKLLY 595 (712)
Q Consensus 538 ~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~-s~~~~~~d~~v~iw~~~-g~~~~ 595 (712)
.|++||+.+++.+... .+..+.+++|+|+|++|+.+ +. |+.+++|++. +..+.
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~-----d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----XNTVSVIDTATNTITA 280 (391)
T ss_dssp EEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred cEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC-----CCEEEEEECCCCcEEE
Confidence 9999999988776653 34567899999999988544 55 8999999987 44443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=227.22 Aligned_cols=310 Identities=13% Similarity=0.167 Sum_probs=215.9
Q ss_pred CeeEEEecCCCC-EEEEEcCCCCCCCcCCCcc----EEEEEEc--cCCcee--eeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 255 QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRV----VINIFDV--RTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 255 ~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~----~I~iwd~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.+....|++.|. ++++|+.... .+| .|+|||+ .+++.+ ..+.+|...+. .++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~------~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 124 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPN------PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLR-------------YAG 124 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEEC------TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHH-------------HHH
T ss_pred CcCHHHHHhcCCCEEEEEEEEEC------CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHH-------------HHH
Confidence 477888999885 5557763200 015 8999999 999877 44766654431 122
Q ss_pred ec--------------CCCCCEEEEec-C------CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 326 WG--------------GGKDKYFAKLG-K------NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 326 ~s--------------~~dg~~la~~~-d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
++ + .+..+++++ + +.|++||+.... ......+...+.+++|||+|+.|++. +
T Consensus 125 ~~~~d~~~~~~~g~~~~-~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~-----s 197 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGA-FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYV-----T 197 (415)
T ss_dssp HHHHHHHHHHHHSSCCC-TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEE-----E
T ss_pred HHHHHHHHHHHcCCCCc-CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEE-----E
Confidence 22 2 266666665 3 799999997543 33344566679999999999999983 3
Q ss_pred CC-CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCC
Q 005140 385 GN-QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 385 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
.+ +...|++|++.+.+... ...+......+.|+|+|++|++... ++. ..+.+|++.. ... ..+..|
T Consensus 198 ~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~-------~~i~~~d~~~--~~~--~~l~~~ 265 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS-------LNLYVMDLAS--GQI--RQVTDG 265 (415)
T ss_dssp CTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSS-------CEEEEEETTT--CCE--EECCCC
T ss_pred ecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCC-------ceEEEEECCC--CCE--EeCcCC
Confidence 33 45688899988766432 2223344567899999999986543 322 1244445433 222 456678
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
...+.+++|+|+|++|++++.++....|++|++.++.. .........+.+++|||+|++|++++....++.|++|
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence 88999999999999999998754334677778765431 1112234567899999999999998763224689999
Q ss_pred ECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccc---cEEEEEecCceeeee--cccceeeeEEecCCC
Q 005140 543 NVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMEN---GFNIWSFNGKLLYRT--LKDHFFQFLWRPRPP 612 (712)
Q Consensus 543 d~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~---~v~iw~~~g~~~~~~--~~~~i~~~~w~p~~~ 612 (712)
|+.+++......+..+.+++|+|||++|++++. ++ .+++|++.|..+... +.+.+.+++|+|.-.
T Consensus 341 d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~-----~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 341 DLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS-----QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE-----ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEc-----CCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 999877655444458899999999999999988 55 799999998766655 557899999999643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=251.79 Aligned_cols=252 Identities=15% Similarity=0.223 Sum_probs=198.8
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
|...|.+++|||+|++|++++.+ |.|+|||+. ++..+..+.+|...+. +++|+|
T Consensus 8 H~~~V~~l~~s~dg~~latg~~d----------g~I~vwd~~~~~~~~~~~l~~h~~~V~-------------~l~~s~- 63 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWAH- 63 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETT----------TEEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-
T ss_pred CcceeEEEEECCCCCeEEEEECC----------CcEEEEecCCCCCccceeccCCcCceE-------------EEEecC-
Confidence 44459999999999999999999 999999997 5677888988887764 799998
Q ss_pred C--CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 330 K--DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 330 d--g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+ +++|++++ ||.|++|++.++. .+.....|...|.+++|+|+ +..+++ ++.++.+++|.+........
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-----gs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-----ASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEECCSSSCCCC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-----EeCCCcEEEEEeecCCCcce
Confidence 8 99999999 9999999999876 44445567778999999999 999998 66777766665544432333
Q ss_pred eeeeeeeecceeEEECc-------------CCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCCceEE
Q 005140 403 RQKNLFSVSDCKMYWQS-------------SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIA 468 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~-------------~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~ 468 (712)
.....+......+.|+| ++.++++++.++. +.+|++...... .....+.+|...|.+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~---------I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL---------VKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC---------EEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe---------EEEEeccCCcccceeeeeecCCCCcEEE
Confidence 33334455667788999 5899999999887 899999875443 233457789999999
Q ss_pred EEEeeC---CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 469 FAWEPK---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 469 ~~~sp~---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
++|+|+ +++|++++.|+ .|++||+.++...... .+... ....+++++|+|+|++|++++. ||.|++|+
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s~s~---Dg~I~vwd 282 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDR---TCIIWTQDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALSGG---DNKVTLWK 282 (753)
T ss_dssp EEECCCCSSSEEEEEEESSS---CEEEEEESSSSSCCBC-CBSSSSCCSSCCCCEEECTTTCCEEEECS---SSCEECCB
T ss_pred EEeccCCCCCCEEEEEecCC---EEEEecCCCCCCccee-EEeccCCCCCceEEEEEcCCCCEEEEEcC---CCEEEEEe
Confidence 999999 89999999999 9999999875421110 11111 2336899999999999999998 99999999
Q ss_pred CCcce
Q 005140 544 VDELE 548 (712)
Q Consensus 544 ~~~~~ 548 (712)
+....
T Consensus 283 ~~~~~ 287 (753)
T 3jro_A 283 ENLEG 287 (753)
T ss_dssp CCSSS
T ss_pred cCCCC
Confidence 98543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=231.99 Aligned_cols=262 Identities=10% Similarity=0.063 Sum_probs=166.2
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceee-----ee-cCC-CeeEEEecC--------CCCEEEEEcCCCCCC
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM-----RY-AHP-QVKLIDFSP--------GEKYLVTYSSHEPSN 278 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~-----~~-~~~-~v~~i~~Sp--------dg~~l~t~s~d~~~~ 278 (712)
......+++++.+||+++.|+ |+||+.. ...... .+ .|. .|.+++|+| ||++||+++.|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D---- 165 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITK-NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD---- 165 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT----
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECC-CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC----
Confidence 334455566788999999999 8899998 544322 12 244 499999998 89999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCceecccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
++|+|||+.++..+..+..|...+. +++|+| ++. +|++++ |++|++||+.++......
T Consensus 166 ------~tv~~Wd~~~~~~~~~~~~~~~~v~-------------~v~~~p-~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 166 ------CTLIIWRLTDEGPILAGYPLSSPGI-------------SVQFRP-SNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp ------SEEEEEEEETTEEEEEEEECSSCEE-------------EEEEET-TEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred ------CeEEEEECCCCceeeeecCCCCCcE-------------EEEECC-CCCceEEecCCCCEEEEEECCCCcccccc
Confidence 9999999988888777777766653 799999 875 788888 999999999876543221
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..+........++ ....+...
T Consensus 226 ~~~~~~~~~~~~s---------------------------------------------~~~~~~~~-------------- 246 (393)
T 4gq1_A 226 SQTELVKNPWLLT---------------------------------------------LNTLPLVN-------------- 246 (393)
T ss_dssp -----CSCCCSEE---------------------------------------------EESGGGC---------------
T ss_pred cccCCcccceEEe---------------------------------------------ccccccee--------------
Confidence 1110000000000 00000000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeE---------
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK--------- 506 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~--------- 506 (712)
.....+|...+.+++|+ |+|+.|++++.|+ .+++||+..+.....+..
T Consensus 247 -------------------~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~---~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 247 -------------------TCHSSGIASSLANVRWIGSDGSGILAMCKSG---AWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------------------------CCSSSCSEEEEETTTTCEEEEECTTS---EEEEEEC-------------------C
T ss_pred -------------------eeecccccccceeeeeecCCCCEEEEEeCCC---CEEEEECccCCCCceEeeecCccccEE
Confidence 01122567778888887 6889999888888 899999865432111000
Q ss_pred ----EEEeC-CCceeEEEEcc--CCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccc
Q 005140 507 ----LTTLK-GKQANALFWSP--SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV 577 (712)
Q Consensus 507 ----~~~~~-~~~v~~l~~sp--dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~ 577 (712)
..... ........|+| ++.++++++. ||.|++||+.+++.+.. .|...|++++|||||++||+++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~---Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~-- 379 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ---HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE-- 379 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETT---TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES--
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECC---CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 00111 01122234444 3345566666 99999999998776543 66789999999999999999976
Q ss_pred eeccccEEEEEecC
Q 005140 578 HEMENGFNIWSFNG 591 (712)
Q Consensus 578 ~~~d~~v~iw~~~g 591 (712)
+++.+|.+.|
T Consensus 380 ----~Gv~lvrL~g 389 (393)
T 4gq1_A 380 ----GSVLLTRLMG 389 (393)
T ss_dssp ----SEEEEEEEGG
T ss_pred ----CCeEEEEEeC
Confidence 6788888765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-23 Score=238.25 Aligned_cols=335 Identities=9% Similarity=0.061 Sum_probs=216.0
Q ss_pred cccceEEEcCCCcEEEEEec-Cc------eEEeecccCcceeeeecC--------------------------CCeeEEE
Q 005140 214 WTESFVQWSPLGTYLATVHR-QG------AAVWGGANTFNRLMRYAH--------------------------PQVKLID 260 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~-~~------i~iw~~~~~~~~~~~~~~--------------------------~~v~~i~ 260 (712)
..+++++|||||++||+++. ++ |.+|+.. +++....+.+ ..|.+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 46789999999999999987 64 7799998 5554433321 1278999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
|||||++|++++. +.|++||+.++. .++.+..+...+. .++||| ||++|++++
T Consensus 116 ~SpDg~~l~~~~~-----------~~i~~~d~~~~~~~~~~~l~~~~~~~~-------------~~~~SP-DG~~la~~~ 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-----------GELYLYDLKQEGKAAVRQLTHGEGFAT-------------DAKLSP-KGGFVSFIR 170 (741)
T ss_dssp ECTTSSEEEEEET-----------TEEEEEESSSCSTTSCCBCCCSSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred ECCCCCEEEEEeC-----------CcEEEEECCCCCcceEEEcccCCcccc-------------cccCCC-CCCEEEEEe
Confidence 9999999999885 379999998873 3445555543332 689999 999999999
Q ss_pred CCeEEEEEcCCceeccccccccc----------------CeeeEEECCCCCeEEEEeecC--------------------
Q 005140 339 KNMISVYETESFTLIDKKSLKVE----------------NVMDFSWSPTDPIISLFVPEL-------------------- 382 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~----------------~v~~~~~sp~~~~la~~~~~~-------------------- 382 (712)
++.|.+|++.++........+.. .+..++|||||++|++.....
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 88999999998765432222211 147899999999999853321
Q ss_pred ------CCCCCCeEEEEEecCC-ccceeeee--eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 383 ------GGGNQPARVSLVQIPS-KEELRQKN--LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 383 ------~~~~~~~~i~~~~~~~-~~~~~~~~--~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
+..+....|++|++.+ .+...... .+......+.| |+|++|++...+... ....+.+|++.. ..
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~----~~~~i~~~d~~~--g~ 323 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ----KKLDLVEVTLAS--NQ 323 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS----SEEEEEEEETTT--CC
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC----CeEEEEEEECCC--Cc
Confidence 0012334888888877 55332211 12334456789 999999987653220 011244444433 22
Q ss_pred eeEEEecCCCC----ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEE-EEccCCCe
Q 005140 454 IEVLELDNKND----KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANAL-FWSPSGRF 526 (712)
Q Consensus 454 ~~~~~l~~h~~----~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l-~~spdg~~ 526 (712)
...+ +..+.. .+.+++|+|||++++++..++ .+.||.++... . ...+.. ..+..+ .|||+|+.
T Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~---~---~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 324 QRVL-AHETSPTWVPLHNSLRFLDDGSILWSSERTG---FQHLYRIDSKG---K---AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEEE-EEEECSSCCCCCSCCEECTTSCEEEEECTTS---SCEEEEECSSS---C---EEESCCSSSCEEEEEEEETTTTE
T ss_pred eEEE-EEcCCCCcCCcCCceEECCCCeEEEEecCCC---ccEEEEEcCCC---C---eeeeeecceEEEeEeEEeCCCCE
Confidence 2111 212222 456899999999777776666 56677664211 1 233333 246666 69999998
Q ss_pred EEEEeccCCCceEEEEECCc-ceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 527 IVLAGLKGFNGQLEFYNVDE-LETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 527 l~~~~~~~~dg~v~iwd~~~-~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|++.+..+....++||++.. +..... .....+..++|||||++|++...+. .....+.+|+..+.
T Consensus 394 l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~-~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNN-STPPQIELFRANGE 460 (741)
T ss_dssp EEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEET-TEEEEEEEEETTSC
T ss_pred EEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCC-CCCCeEEEEEcCCC
Confidence 87665421122888998763 332222 2245678999999999998876520 01246777876543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=248.89 Aligned_cols=355 Identities=9% Similarity=-0.002 Sum_probs=233.9
Q ss_pred cchhhccCCCCCceEEEEE-----CCeeEEEecCCCCCCCcccccCCCccc-------ceEEEcCCCcEEEEEecC----
Q 005140 171 NLQKWLTDEKARDQFVIRS-----GTDTEVLWNDARHLKPEPVYKRSYWTE-------SFVQWSPLGTYLATVHRQ---- 234 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~v-------~~v~~Spdg~~lat~~~~---- 234 (712)
.......+|+|+....+.. ++..+.+|+.. ......++.|...+ .+++|||||+++++++.+
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~--~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~ 131 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE--NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 131 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT--TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC--CCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence 3445667888885544433 33466688873 33456788888888 899999999977777654
Q ss_pred c---eEEeecccCcceeeeec--------------------------------------------------CC-CeeEEE
Q 005140 235 G---AAVWGGANTFNRLMRYA--------------------------------------------------HP-QVKLID 260 (712)
Q Consensus 235 ~---i~iw~~~~~~~~~~~~~--------------------------------------------------~~-~v~~i~ 260 (712)
+ +.+|+.. ++....... |. .+.++.
T Consensus 132 ~~~~l~~~~~~-~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~ 210 (1045)
T 1k32_A 132 SMTCLYRVEND-GINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 210 (1045)
T ss_dssp TCCEEEEEEGG-GTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred ccceEEEEECC-CCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceE
Confidence 2 5677766 333211111 11 144445
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecC
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK 339 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d 339 (712)
|+++ .++++++.+ +.+.||.+.. +...+.+..+... ..++||| ||++|+++.+
T Consensus 211 ~s~d-~l~~~~~~d----------g~~~l~~~~~~g~~~~~l~~~~~~--------------~~~~~Sp-DG~~la~~~~ 264 (1045)
T 1k32_A 211 IVGH-RIYFITDID----------GFGQIYSTDLDGKDLRKHTSFTDY--------------YPRHLNT-DGRRILFSKG 264 (1045)
T ss_dssp EETT-EEEEEECTT----------SSCEEEEEETTSCSCEECCCCCSS--------------CEEEEEE-SSSCEEEEET
T ss_pred EeCC-EEEEEEecc----------CceEEEEEeCCCCcceEecCCCCc--------------ceeeEcC-CCCEEEEEeC
Confidence 5554 333333333 4555665532 3344445444322 2579999 9999999899
Q ss_pred CeEEEEEcCCceecccccc-----------cccCeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 340 NMISVYETESFTLIDKKSL-----------KVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
+.|.+|++....+. .... +...+.+++|| |+|+.|++ ++ ...+++++......... ..
T Consensus 265 ~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~-----~~---~~~i~~~~~~~~~~~~~-~~ 334 (1045)
T 1k32_A 265 GSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF-----VS---RGQAFIQDVSGTYVLKV-PE 334 (1045)
T ss_dssp TEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE-----EE---TTEEEEECTTSSBEEEC-SC
T ss_pred CEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEE-----EE---cCEEEEEcCCCCceEEc-cC
Confidence 99999998543332 2211 22358899999 99999998 33 34678888766543321 11
Q ss_pred eee-cceeEEECcCCCEEEEEEcccccccccccccEEEE-EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 408 FSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF-RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 408 ~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
+.. ....+.|+ +|+.|++++.+. .+| ..+..+... ..+.+|...+.+++|||||++|++++.++
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~-----------~l~~~~d~~~~~~--~~l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREG-----------DFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTE-----------EEEEEEETTTCCE--EECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred CCcceEEeeeEc-CCCeEEEEECCC-----------ceEEEEECCCCCc--eEecCCccceeeeEECCCCCEEEEECCCC
Confidence 222 44567899 999999887632 455 333322222 33447778999999999999999999988
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEecc-------CCCceEEEEECCcceeeee-ccccc
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK-------GFNGQLEFYNVDELETMAT-AEHFM 557 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~-------~~dg~v~iwd~~~~~~~~~-~~~~~ 557 (712)
.|++||+.++.. ..+.......+.+++|||||++|++++.. ..++.|++||+.+++.... .+...
T Consensus 401 ---~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~ 473 (1045)
T 1k32_A 401 ---EIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 473 (1045)
T ss_dssp ---EEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB
T ss_pred ---eEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcc
Confidence 999999976542 23322334467899999999999988751 1135999999998774433 45567
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+..++|+|||++|++++. ++...+|+..
T Consensus 474 ~~~~~~spdG~~l~~~s~-----~~~~~~~~~~ 501 (1045)
T 1k32_A 474 DYAPAFDADSKNLYYLSY-----RSLDPSPDRV 501 (1045)
T ss_dssp EEEEEECTTSCEEEEEES-----CCCCCEECSS
T ss_pred cCCceEcCCCCEEEEEec-----ccCCcCcchh
Confidence 888999999999999998 6777777654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=251.89 Aligned_cols=251 Identities=14% Similarity=0.163 Sum_probs=195.8
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCc
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPR 280 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~ 280 (712)
..+.+|...|++++|||+|++||+++.+| |+||+..+ +...+..+ .|. .|.+++|+|+ +++|++++.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------ 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------ 76 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------
Confidence 45789999999999999999999999999 88999862 23344444 244 5999999998 9999999999
Q ss_pred CCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCceecc-
Q 005140 281 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTLID- 354 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~~- 354 (712)
+.|++||+.+++ .+..+.+|...+. +++|+| + ++++++++ |+.|++|++.++....
T Consensus 77 ----g~I~vwd~~~~~~~~~~~~~~h~~~V~-------------~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 77 ----GKVLIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp ----SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred ----CeEEEEECCCCcccccccccCCCCCeE-------------EEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 999999999887 6777777877663 799999 9 99999999 9999999998764332
Q ss_pred -cccccccCeeeEEECC-------------CCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeeeeeeecceeEEEC
Q 005140 355 -KKSLKVENVMDFSWSP-------------TDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 355 -~~~~~~~~v~~~~~sp-------------~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~s 418 (712)
....+...|.+++|+| ++..|++ ++.++.+++|....... ........+......+.|+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s-----gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-----GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEE-----EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEE-----EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 2234667799999999 5888988 77888888777765432 2233334455667788999
Q ss_pred cC---CCEEEEEEcccccccccccccEEEEEEecCCcce--eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 419 SS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI--EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 419 ~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
|+ |.+|++++.++. +.+|++.....+. .......|...|.+++|+|+|++|++++.|+ .|++|
T Consensus 214 p~~~~~~~l~s~s~Dg~---------I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg---~I~vw 281 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRT---------CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLW 281 (753)
T ss_dssp CCCSSSEEEEEEESSSC---------EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS---CEECC
T ss_pred cCCCCCCEEEEEecCCE---------EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC---EEEEE
Confidence 99 899999999877 8999998653221 1122345788999999999999999999999 99999
Q ss_pred Eeecc
Q 005140 494 SMRTA 498 (712)
Q Consensus 494 d~~~~ 498 (712)
++..+
T Consensus 282 d~~~~ 286 (753)
T 3jro_A 282 KENLE 286 (753)
T ss_dssp BCCSS
T ss_pred ecCCC
Confidence 99753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-23 Score=219.54 Aligned_cols=308 Identities=13% Similarity=0.093 Sum_probs=208.8
Q ss_pred ccchhhccCCCCCceEEEEE----CCe----eEEEecC--CCCCCCc--ccccCCCcccceEEEcC--------------
Q 005140 170 ENLQKWLTDEKARDQFVIRS----GTD----TEVLWND--ARHLKPE--PVYKRSYWTESFVQWSP-------------- 223 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~----~~~----~~~~w~~--~~~~~~~--~~~~~~~~~v~~v~~Sp-------------- 223 (712)
-++..|-. .+.+.++.+. .++ .+.+|+. .. ++.+ ..+.+|...+..+++++
T Consensus 65 ~~~~~w~~--~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 65 VQPAAWSA--LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp CCHHHHHT--TTCCEEEEEEEEECTTSCEEEEEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCHHHHHh--cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34556644 3555554433 455 6789998 43 3333 45788888888888876
Q ss_pred CCcEEEEEecC------c-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 224 LGTYLATVHRQ------G-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 224 dg~~lat~~~~------~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
.+..||+++.+ + |.+||..+.......-+...+.+++|||||++|++++.+. ....|++||+.+++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-------~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANGA 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTCC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-------CCcEEEEEECCCCc
Confidence 26677777653 4 8899998332222222334599999999999999999771 11489999999988
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE-Eec-C--CeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-K--NMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la-~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
... +..+...+. +++||| ||++|+ +++ + ..|.+||+.++... ....+...+.+++|+|+|
T Consensus 215 ~~~-l~~~~~~~~-------------~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg 278 (415)
T 2hqs_A 215 VRQ-VASFPRHNG-------------APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS 278 (415)
T ss_dssp EEE-EECCSSCEE-------------EEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTS
T ss_pred EEE-eecCCCccc-------------CEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCCC
Confidence 754 444443332 689999 999888 444 4 45999999877653 233444568899999999
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
+.|++.. ..++...||+|+....+.
T Consensus 279 ~~l~~~s----~~~g~~~i~~~d~~~~~~--------------------------------------------------- 303 (415)
T 2hqs_A 279 QNLAFTS----DQAGRPQVYKVNINGGAP--------------------------------------------------- 303 (415)
T ss_dssp SEEEEEE----CTTSSCEEEEEETTSSCC---------------------------------------------------
T ss_pred CEEEEEE----CCCCCcEEEEEECCCCCE---------------------------------------------------
Confidence 9888731 124455666666543210
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEe
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~ 531 (712)
..+..|...+.+++|+|+|++|++++.+.....|.+|++.++. . ..+. ...+.+++|+|+|++|++++
T Consensus 304 ----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~-~~l~~~~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 304 ----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------V-QVLSSTFLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp ----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------E-EECCCSSSCEEEEECTTSSEEEEEE
T ss_pred ----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------E-EEecCCCCcCCeEEcCCCCEEEEEE
Confidence 1122335567789999999999998876333389999997654 2 2233 23688999999999999988
Q ss_pred ccCCCceEEEEECCcceeee-eccccceeeEEECCCCCE
Q 005140 532 LKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRY 569 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~ 569 (712)
.......|++||+.+..... ..+.+.|.+++|+|.-++
T Consensus 373 ~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp EETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred cCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccccc
Confidence 62111289999998655443 356689999999997543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-23 Score=220.25 Aligned_cols=290 Identities=13% Similarity=0.110 Sum_probs=210.6
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee------cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY------AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~------~~~-~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+..+ ..+.+++|+|++.++++++.++ |.+||.. +++.+... .|. .|.+++|+|+|+++++++.+
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 34444 3456899999888888887777 8999998 66665522 233 49999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE-Eec-CCeEEEEEcCCceeccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la-~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+.|++||+.+++.+..+..+...+. +++|+| ++++++ ++. ++.|.+||+.+++.+....
T Consensus 191 -----~~v~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 191 -----NAVHVFDLKTLAYKATVDLTGKWSK-------------ILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp -----TEEEEEETTTCCEEEEEECSSSSEE-------------EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred -----CEEEEEECCCceEEEEEcCCCCCee-------------EEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence 9999999999999988887665442 689999 999875 444 8999999999887765443
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCC-CCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEE-Eccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGG-NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK-VDRYTKTK 435 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~ 435 (712)
. ...+.+++|+|+++.|++.....+.. .....|.+|++.+.+.+.... +......+.|+|+|+++++. ..++.
T Consensus 252 ~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~--- 326 (433)
T 3bws_A 252 K-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSK--- 326 (433)
T ss_dssp C-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTE---
T ss_pred C-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCE---
Confidence 3 33489999999999988732211000 034678888887766544432 23355567899999877665 44443
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC------------CeEEEEEeecccccCc
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR------------PDISFYSMRTAQHAGR 503 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~------------~~v~i~d~~~~~~~~~ 503 (712)
+.+|++... .... .+ .+...+.+++|+|+|+++++++.+... ..|++||+.++.
T Consensus 327 ------v~v~d~~~~-~~~~--~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---- 392 (433)
T 3bws_A 327 ------IEVYDLKEK-KVQK--SI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---- 392 (433)
T ss_dssp ------EEEEETTTT-EEEE--EE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE----
T ss_pred ------EEEEECCCC-cEEE--Ee-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc----
Confidence 678876532 2222 22 357889999999999999988874211 189999997654
Q ss_pred eeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 504 VSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 504 ~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
.+..+. ...+.+++|+|+|++|++++. .++.|++|++++
T Consensus 393 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~d~~i~v~~~~~ 432 (433)
T 3bws_A 393 --VKEFWEAGNQPTGLDVSPDNRYLVISDF--LDHQIRVYRRDG 432 (433)
T ss_dssp --EEEEEECSSSEEEEEECTTSCEEEEEET--TTTEEEEEEETT
T ss_pred --EEEEecCCCCCceEEEcCCCCEEEEEEC--CCCeEEEEEecC
Confidence 344443 346899999999999988763 189999999863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-24 Score=218.55 Aligned_cols=273 Identities=12% Similarity=0.037 Sum_probs=194.2
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-- 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-- 293 (712)
....+.+++.+||+|+.|+ |++||.. +++.+..+....|.++.|+|+ +++++.| ++|++|+..
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~-~~~~~~~~~~~~v~~~~~~~~---~~s~s~D----------~~i~~w~~~~~ 105 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLK-DSKTITTITTPNPRTGGEHPA---IISRGPC----------NRLLLLYPGNQ 105 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEES-SSSCEEEEEEECCCTTCCCCS---EEEECST----------TEEEEEETTTE
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECC-CCcEEEEEecCCceeeeeCCc---eEEecCC----------CeEEEEEccCc
Confidence 3445668999999999999 8899999 788777777667899999998 9999999 999999754
Q ss_pred -------CCceeeecc-CCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec-CCeEEEEEcCCceecccccc-cccC
Q 005140 294 -------TGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESFTLIDKKSL-KVEN 362 (712)
Q Consensus 294 -------~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~-d~~i~iwd~~~~~~~~~~~~-~~~~ 362 (712)
+++.++.+. .|...+. +++|+|. ++++|++++ |++|++||+.+++.+..... +...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEII-------------YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEE-------------EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred eEEeecCCcceeEEeecCCCCCEE-------------EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 444444444 3333332 6888873 567899888 99999999998876543322 3335
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.+++|+|++.+|++ |+.++.+++|. +.+.+
T Consensus 173 i~~~~~~pdg~~las-----g~~dg~i~iwd--~~~~~------------------------------------------ 203 (343)
T 3lrv_A 173 YSSGVLHKDSLLLAL-----YSPDGILDVYN--LSSPD------------------------------------------ 203 (343)
T ss_dssp CCEEEECTTSCEEEE-----ECTTSCEEEEE--SSCTT------------------------------------------
T ss_pred eEEEEECCCCCEEEE-----EcCCCEEEEEE--CCCCC------------------------------------------
Confidence 888999999988888 66666655543 22111
Q ss_pred EEEEEecCCcceeEEEecC-CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--Cce--eE
Q 005140 443 ELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQA--NA 517 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v--~~ 517 (712)
.. ...+.. |.++|.+++|+|+|.+|++++ ++ .|++||+++...... +..+.. ..+ .+
T Consensus 204 ---------~~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~---~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 204 ---------QA--SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ---TVVCFDLRKDVGTLA---YPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------SC--CEECCCCTTSCEEEEEECTTSSEEEEEE-SS---BEEEEETTSSTTCBS---SCCCBC-----CCEE
T ss_pred ---------CC--ccEEeccCCCCEEEEEEeCCCCEEEEEe-CC---eEEEEEcCCCCccee---ecccccccccccceE
Confidence 00 012334 889999999999999999999 55 799999987543211 111111 223 36
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECC---CCCEEEEEEccceeccccEEEEEecCc
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
++|+|+|++|++++.+ ++.+++|++......... ..+..++|+| +++.|++++. |+.+.++-..+.
T Consensus 266 ~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----d~~~~~~~~~~~ 334 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCG-----DGGIAAILKTND 334 (343)
T ss_dssp EEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEE-----TTEEEEEEECSS
T ss_pred EEECCCCCEEEEecCC--CCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEec-----CCceEEEEecCC
Confidence 9999999999997631 688999999754332221 5677899999 9999999999 899998876654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=241.95 Aligned_cols=332 Identities=11% Similarity=0.147 Sum_probs=206.3
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~----~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
...+++|||||+++++ +.++ +++||.. +++....+. +. .|.+++|||||++|++++.+... ......+.|+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~-~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-YQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-SSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCCCEEEEEecCccc-eeecceeeEE
Confidence 3567999999998877 5666 8899998 665554443 33 38999999999999999765211 1111226899
Q ss_pred EEEccCCceeeeccCCC---cccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccccccc----
Q 005140 289 IFDVRTGKVMRDFKGSA---DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVE---- 361 (712)
Q Consensus 289 iwd~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~---- 361 (712)
+||+.+++. +.+.... ..+. .++||| ||++||+++++.|.+|++.++........+..
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~-------------~~~~SP-dG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQ-------------YAGWGP-KGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCS-------------BCCBCS-STTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred EEECCCCce-EeccCCcccccccc-------------ccEECC-CCCEEEEEECCeEEEEECCCCceEEEecCCCCCceE
Confidence 999988875 3333221 1121 579999 99999999999999999988765432222222
Q ss_pred --------------CeeeEEECCCCCeEEEEeecC---------------------------CCCCCCeEEEEEecCCcc
Q 005140 362 --------------NVMDFSWSPTDPIISLFVPEL---------------------------GGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 362 --------------~v~~~~~sp~~~~la~~~~~~---------------------------~~~~~~~~i~~~~~~~~~ 400 (712)
.+.+++|||||+.|++..... +..+....|++|++.+.+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 237899999999999854321 001123478888887765
Q ss_pred ceeeeeee------eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce----EEEE
Q 005140 401 ELRQKNLF------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI----IAFA 470 (712)
Q Consensus 401 ~~~~~~~~------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v----~~~~ 470 (712)
........ ......+.|+|||++|++...+.. ....+.+|++... ....+....+...+ .+++
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 240 HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ-----NVSILTLCDATTG--VCTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS-----CEEEEEEEETTTC--CEEEEEEEECSSCCCCCCCCCE
T ss_pred eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC-----CeEEEEEEeCCCC--cceEEEEeccCCEEeccCCCce
Confidence 32222211 233456789999998877665421 0122455554332 22222111233433 3789
Q ss_pred EeeCCCEEEEE-EcCCC----CCeEEEEE-eecccccCceeEEEEeCC--Ccee-EEEEccCCCeEEEEeccCCCceEEE
Q 005140 471 WEPKGHRFAVI-HGDSP----RPDISFYS-MRTAQHAGRVSKLTTLKG--KQAN-ALFWSPSGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 471 ~sp~g~~l~~~-~~d~~----~~~v~i~d-~~~~~~~~~~~~~~~~~~--~~v~-~l~~spdg~~l~~~~~~~~dg~v~i 541 (712)
|||||+.|++. +.... ...|.+|+ ..++... ....+.. ..+. .++|||||++|++.+.....+.+.+
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND----NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC----CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc----ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 99999988876 43221 12466676 3322200 0122221 2343 4799999999987765211178889
Q ss_pred EECCcc---eeee-ec---cccceeeEEECCCCCEEEEEEc
Q 005140 542 YNVDEL---ETMA-TA---EHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 542 wd~~~~---~~~~-~~---~~~~v~~~~~spdg~~l~t~s~ 575 (712)
|+++.. .... +. +...+..++|||||++|+....
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 987632 1211 11 4566889999999999887654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-22 Score=216.94 Aligned_cols=334 Identities=15% Similarity=0.184 Sum_probs=233.5
Q ss_pred EEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCC
Q 005140 220 QWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTG 295 (712)
Q Consensus 220 ~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--~~g 295 (712)
+|+|+|.++++.+.++ |.+||.. +++.+.++. ...+.+++|||||++|++++.+ +.|.+||+ .++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d----------~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYAVHISRMSASGRYLLVIGRD----------ARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEECSTTEEEEEECTTSCEEEEEETT----------SEEEEEETTSSSC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEecCcccceEEECCCCCEEEEECCC----------CeEEEEECcCCCC
Confidence 4899999999998888 8899999 888887776 3348999999999999999999 89999999 889
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecC--C-CCCEEEEec--CCeEEEEEcCCceeccccccc----------c
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG--G-KDKYFAKLG--KNMISVYETESFTLIDKKSLK----------V 360 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~-dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~----------~ 360 (712)
+.+..+..+.... .++||| + ||+++++++ +++|.+||..+++++.....+ .
T Consensus 213 ~~~~~i~~g~~p~--------------~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 213 TKVAEIKIGIEAR--------------SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp EEEEEEECCSEEE--------------EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred cEEEEEecCCCcc--------------eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence 8888887654443 688986 1 578888777 899999999988876554331 1
Q ss_pred c-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-eeecceeEEECcCCCEEEEEEc-cccccccc
Q 005140 361 E-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-FSVSDCKMYWQSSGDYLAVKVD-RYTKTKKS 437 (712)
Q Consensus 361 ~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~ 437 (712)
. .+..+.++|++..+++. ......|++++....+.+....+ .......+.|+|+|++++++.. +++
T Consensus 279 ~~~v~~i~~s~~~~~~~vs------~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~----- 347 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVN------VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK----- 347 (543)
T ss_dssp CCCEEEEEECSSSSEEEEE------ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-----
T ss_pred CCceEEEEECCCCCEEEEE------ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-----
Confidence 2 58899999988876652 23345788888776554332111 1223345789999999887665 333
Q ss_pred ccccEEEEEEecCCcceeEEEe--cCCCCceEEEEEeeC-CCEEEEEE-cCCCCCeEEEEEeecccc-cCceeEEEEeCC
Q 005140 438 TYTGFELFRIKERDIPIEVLEL--DNKNDKIIAFAWEPK-GHRFAVIH-GDSPRPDISFYSMRTAQH-AGRVSKLTTLKG 512 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l--~~h~~~v~~~~~sp~-g~~l~~~~-~d~~~~~v~i~d~~~~~~-~~~~~~~~~~~~ 512 (712)
+.+|++.... ....+.. ..|.+....+ ++|+ |..+++++ +++ +|.+|++.+... ...++.+.++..
T Consensus 348 ----v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~---~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 348 ----VAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG---SISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp ----EEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred ----EEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc---eEEEEEeCCCCCchhcCeEEEEEEc
Confidence 6677665432 2222222 1255444444 4777 55555544 456 999999976221 111346666664
Q ss_pred C--ceeEEEEccCCCeEEEEeccC----CCceEEEEECCcceee-ee----------ccccceeeEEECCCCCEEEEEEc
Q 005140 513 K--QANALFWSPSGRFIVLAGLKG----FNGQLEFYNVDELETM-AT----------AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 513 ~--~v~~l~~spdg~~l~~~~~~~----~dg~v~iwd~~~~~~~-~~----------~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+ .+..+++||+|++|++++..+ .+++|.+||+.+++.. .. .+...+..+.|+|+|++|+++..
T Consensus 419 ~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 419 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 4 567899999999999987211 1679999999987765 22 23467889999999999997753
Q ss_pred cceeccccEEEEEec-Cceeeeec
Q 005140 576 SVHEMENGFNIWSFN-GKLLYRTL 598 (712)
Q Consensus 576 ~~~~~d~~v~iw~~~-g~~~~~~~ 598 (712)
.....++.|.|||.. ++++....
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCCCCCCeEEEEECCCceEEEeec
Confidence 111127999999987 44444443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=231.45 Aligned_cols=341 Identities=11% Similarity=0.039 Sum_probs=225.1
Q ss_pred chhhccCCCCCceEEEEECCe-----eEEEecCCCCCCCcccccCCC------------------------cccceEEEc
Q 005140 172 LQKWLTDEKARDQFVIRSGTD-----TEVLWNDARHLKPEPVYKRSY------------------------WTESFVQWS 222 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~------------------------~~v~~v~~S 222 (712)
+.....+|+|+-.+.+...++ .+.+|+. ..++....+..+. ..+.+++||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 344556788875544444255 7789998 3444433333332 348899999
Q ss_pred CCCcEEEEEecCceEEeecccCc---ceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 223 PLGTYLATVHRQGAAVWGGANTF---NRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 223 pdg~~lat~~~~~i~iw~~~~~~---~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
|||++|++++...|.+|+.. +. .......+ ..+.+++|||||++|++++.+ .|++||+.+++..
T Consensus 118 pDg~~l~~~~~~~i~~~d~~-~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~-----------~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 118 PDAQRLLFPLGGELYLYDLK-QEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR-----------NLWVIDLASGRQM 185 (741)
T ss_dssp TTSSEEEEEETTEEEEEESS-SCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT-----------EEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCcEEEEECC-CCCcceEEEcccCCcccccccCCCCCCEEEEEeCC-----------cEEEEecCCCCEE
Confidence 99999999998669999998 55 33322233 359999999999999998744 7999999888766
Q ss_pred eeccCCCcccccCCCCCc----CCCCcCeEEecCCCCCEEEEec-CC---------------------------------
Q 005140 299 RDFKGSADEFAVGGTGGV----AGVSWPVFRWGGGKDKYFAKLG-KN--------------------------------- 340 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~dg~~la~~~-d~--------------------------------- 340 (712)
+....+...+..+....+ .+. ...+.||| ||++|++++ ++
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~-~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDR-HTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCC-CCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EeccCCccceeccccceeeeecccc-ccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 555443321100000000 000 01589999 999999886 54
Q ss_pred eEEEEEcCC-ceeccccc--ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee----cce
Q 005140 341 MISVYETES-FTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV----SDC 413 (712)
Q Consensus 341 ~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~ 413 (712)
.|.+||+.+ ++...... .+...+..++| |||+.|++..... ......|++|+..+.+.......... ...
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR--DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET--TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc--cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788899887 66432211 13345889999 9999999854433 44567899999887664433222221 223
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE-EEeeCCCEEEEEEcCCCCCeEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF-AWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~-~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.+.|+|+|++++++..++. ..||.++..+. ...+..|...+.++ +|+|+|+.|++.+.+.....++|
T Consensus 341 ~~~~spdg~~~~~~~~~g~---------~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGF---------QHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp CCEECTTSCEEEEECTTSS---------CEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred ceEECCCCeEEEEecCCCc---------cEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence 5789999997766655543 57888875443 35566778888887 59999999887776543336889
Q ss_pred EEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccC-CCceEEEEECCcc
Q 005140 493 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDEL 547 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~~ 547 (712)
|++..... ....+. ...+..++|||||++|++...+. ..+.+++++..+.
T Consensus 409 ~~~~~~g~-----~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 409 YAVPLQGG-----QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTCC-----CCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEcCCC-----CeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 99864221 122333 33578999999999998875421 2367899998644
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-23 Score=224.94 Aligned_cols=357 Identities=11% Similarity=0.061 Sum_probs=236.7
Q ss_pred ccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeec--ccCcceeeeec
Q 005140 176 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGG--ANTFNRLMRYA 252 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~--~~~~~~~~~~~ 252 (712)
..+|++ ..|+..+.++++.+|+. ..++....+..+.. +.+++|||||++|++++.++ |.+||+ . +.+.+.++.
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAEIK 219 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEEEEE
T ss_pred ccCCCC-EEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC-CCcEEEEEe
Confidence 355654 36677777888999998 56666666663333 78999999999999999888 889999 6 777777776
Q ss_pred CC-CeeEEEecC----CCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 253 HP-QVKLIDFSP----GEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 253 ~~-~v~~i~~Sp----dg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
+. .+..++||| ||++|++++. + ++|.|||..++++++.+..+..... +........ -..+.+
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~----------~~v~v~D~~t~~~~~~i~~~g~~~~-~~~~~~~~~-v~~i~~ 287 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWP----------PQFAIMDGETLEPKQIVSTRGMTVD-TQTYHPEPR-VAAIIA 287 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEES----------SEEEEEETTTCCEEEEEECCEECSS-SCCEESCCC-EEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccC----------CeEEEEeccccccceeecccCcccC-ccccccCCc-eEEEEE
Confidence 54 499999999 9999999885 5 7899999999999888865321100 000000000 015889
Q ss_pred cCCCCCEEEEe-c-CCeEEEEEcCCceecccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 327 GGGKDKYFAKL-G-KNMISVYETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 327 s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|| ++..++.. . ++.|.+||+.+.+.+....+ +...+.++.|+|+|+++++. ......|.+|+..+.+.+.
T Consensus 288 s~-~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va------~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 288 SH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA------ANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp CS-SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE------EGGGTEEEEEETTTTEEEE
T ss_pred CC-CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE------ecCCCeEEEEECCCCeEEE
Confidence 99 88765544 4 89999999987654431112 23347889999999987652 2223356668888776555
Q ss_pred eeeee----eecceeEEECcCCCEEEEEE--cccccccccccccEEEEEEecCCc----ceeEEEecCCCCceEEEEEee
Q 005140 404 QKNLF----SVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDI----PIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 404 ~~~~~----~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~l~~h~~~v~~~~~sp 473 (712)
..... ......+ ++|++..+++.. .+++ +.+|++...+. -....++..|.+.+..++++|
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~---------V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS---------ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE---------EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccCCCce---------EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 44321 1112222 467744444433 3344 78888875221 123345667778888999999
Q ss_pred CCCEEEEEEcCCC----CCeEEEEEeecccccCceeEEE-----EeCCCceeEEEEccCCCeEEEEecc--CCCceEEEE
Q 005140 474 KGHRFAVIHGDSP----RPDISFYSMRTAQHAGRVSKLT-----TLKGKQANALFWSPSGRFIVLAGLK--GFNGQLEFY 542 (712)
Q Consensus 474 ~g~~l~~~~~d~~----~~~v~i~d~~~~~~~~~~~~~~-----~~~~~~v~~l~~spdg~~l~~~~~~--~~dg~v~iw 542 (712)
+|++|++.+.-++ ..+|.+||+.+........++. .-.+..+..+.|+|+|+.|+++... +.++.|.||
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence 9999999872111 1289999998765310110010 0113468899999999999987431 237999999
Q ss_pred ECCcceeeeeccccceeeEEECCCCCE
Q 005140 543 NVDELETMATAEHFMATDVEWDPTGRY 569 (712)
Q Consensus 543 d~~~~~~~~~~~~~~v~~~~~spdg~~ 569 (712)
|..+++++.+.....+ .+|+|+|
T Consensus 511 D~~t~~~~~~i~~~~~----~~p~g~~ 533 (543)
T 1nir_A 511 DDKTLKLKAVVKDPRL----ITPTGKF 533 (543)
T ss_dssp ETTTTEEEEEECCTTC----CSEEEEE
T ss_pred ECCCceEEEeecCCCc----cCCCeee
Confidence 9999999877654332 3355544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-23 Score=221.19 Aligned_cols=251 Identities=13% Similarity=0.258 Sum_probs=182.2
Q ss_pred cccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecccC---------cceeeee-cCC-CeeEEEecCCCC-EEEEEcC
Q 005140 208 VYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANT---------FNRLMRY-AHP-QVKLIDFSPGEK-YLVTYSS 273 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~---------~~~~~~~-~~~-~v~~i~~Spdg~-~l~t~s~ 273 (712)
....|...|++++|+|+ +.+||+++.+| |.||++... ...+..+ .|. .|.+++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34578899999999997 78999999998 889999721 4444444 344 499999999998 9999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCce-------eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEE
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKV-------MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVY 345 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iw 345 (712)
+ +.|++|++.++.. ...+.+|...+. +++|+|.++.+|++++ ++.|++|
T Consensus 203 d----------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-------------~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 203 D----------HTICLWDINATPKEHRVIDAKNIFTGHTAVVE-------------DVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp T----------SCEEEEETTSCCBGGGEEECSEEECCCSSCEE-------------EEEECSSCTTEEEEEETTSEEEEE
T ss_pred C----------CeEEEEeCCCCCCCCceeccceeecCCCCCEe-------------eeEEeCCCCCEEEEEeCCCeEEEE
Confidence 9 9999999987432 345556655542 7999993356777877 9999999
Q ss_pred EcCCc---eecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCC
Q 005140 346 ETESF---TLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG 421 (712)
Q Consensus 346 d~~~~---~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 421 (712)
|+.++ ..+.....|...|.+++|+|++.. |++ ++.++.+++ |++.
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t-----g~~dg~v~v--wd~~------------------------ 308 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT-----GSADKTVAL--WDLR------------------------ 308 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE-----EETTSEEEE--EETT------------------------
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE-----EeCCCeEEE--EeCC------------------------
Confidence 99876 333334456667888888888774 555 444444433 3322
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccc
Q 005140 422 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
....+. ..+.+|...|.+++|+|+++ .|++++.|+ .|++|++.....
T Consensus 309 ---------------------------~~~~~~--~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~---~i~iwd~~~~~~ 356 (430)
T 2xyi_A 309 ---------------------------NLKLKL--HSFESHKDEIFQVQWSPHNETILASSGTDR---RLHVWDLSKIGE 356 (430)
T ss_dssp ---------------------------CTTSCS--EEEECCSSCEEEEEECSSCTTEEEEEETTS---CCEEEEGGGTTC
T ss_pred ---------------------------CCCCCe--EEeecCCCCEEEEEECCCCCCEEEEEeCCC---cEEEEeCCCCcc
Confidence 111111 23446789999999999995 688888888 899999976221
Q ss_pred cC--------ceeEEEEeCCC--ceeEEEEccCCC-eEEEEeccCCCceEEEEECCcc
Q 005140 501 AG--------RVSKLTTLKGK--QANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 501 ~~--------~~~~~~~~~~~--~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
.. ....+..+.++ .+++++|+|+++ +|++++. ||.|+||++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~---dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE---DNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC---CCCEEEeEcccc
Confidence 00 01255555544 699999999999 7888887 999999999843
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-22 Score=228.23 Aligned_cols=333 Identities=11% Similarity=0.112 Sum_probs=212.3
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcce--eeeecC------------------CCeeEEEecCCCCEEEEEcCC
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNR--LMRYAH------------------PQVKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~--~~~~~~------------------~~v~~i~~Spdg~~l~t~s~d 274 (712)
.+..++|+ |..+++++.++| +||.. +++. ...+.+ ..|.+++|||| ++++.+. +
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~-tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDDL-VFNKA-NGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTEE-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred cCCCCcCc--CCeEEEEeCCcE-EEECC-CCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 35668999 667777778889 99998 5554 222221 45999999999 6666553 4
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC-----
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES----- 349 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~----- 349 (712)
+.|++||+.+++...... +...+. .++||| ||++|+++.++.|.+|++.+
T Consensus 101 ----------~~i~~~d~~~~~~~~l~~-~~~~~~-------------~~~~Sp-dG~~la~~~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 101 ----------GGLVGFDMLARKVTYLFD-TNEETA-------------SLDFSP-VGDRVAYVRNHNLYIARGGKLGEGM 155 (706)
T ss_dssp ----------TEEEEEETTTTEEEEEEC-CTTCCT-------------TCEECT-TSSEEEEEETTEEEEEECBCTTSCC
T ss_pred ----------CEEEEEECCCCceEEccC-Cccccc-------------CCcCCC-CCCEEEEEECCeEEEEecCcccccC
Confidence 589999998887654433 322221 579999 99999998899999999988
Q ss_pred ceecccccccccC--------------eeeEEECCCCCeEEEEeecC--------------------------CCCCCCe
Q 005140 350 FTLIDKKSLKVEN--------------VMDFSWSPTDPIISLFVPEL--------------------------GGGNQPA 389 (712)
Q Consensus 350 ~~~~~~~~~~~~~--------------v~~~~~sp~~~~la~~~~~~--------------------------~~~~~~~ 389 (712)
++........... +.+++|||||++|++..... +..+...
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 6644322222222 48899999999999853110 0123557
Q ss_pred EEEEEecCCccceeeee--eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC---
Q 005140 390 RVSLVQIPSKEELRQKN--LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--- 464 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--- 464 (712)
.|++|++.+.+...... .+......+.|+|+|++|++...+... ....+.+|++.... ....+....+..
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ----NECKVNAYDAETGR-FVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS----CEEEEEEEETTTCC-EEEEEEEEECSSCCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC----CeeEEEEEECCCCc-eeeEEEEccCCCeEC
Confidence 89999987765332221 122334567999999999987655321 01124455543321 222221112222
Q ss_pred ceEEEEEee--CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeE-EEEccCCCeEEEEeccCC--Cc
Q 005140 465 KIIAFAWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA-LFWSPSGRFIVLAGLKGF--NG 537 (712)
Q Consensus 465 ~v~~~~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~-l~~spdg~~l~~~~~~~~--dg 537 (712)
.+.+++|+| +|++++++..++ .++||.++.... .+..+..+ .+.. ++|+|+|+.|++++.... ..
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~-----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGR-----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSC-----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred ccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCC-----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 346789999 999888777777 678888762211 44555443 4555 899999999887765221 13
Q ss_pred eEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 538 QLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 538 ~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
.|+.||+.+++.....+...+.+++|||||++|+++..+. ...+.+++|++.+.
T Consensus 383 ~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~-~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSP-TVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECS-SCSCEEEEEESSSC
T ss_pred EEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCC-CCCcEEEEEECCCC
Confidence 7778888776644444566788999999999998876520 01256999998654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=213.49 Aligned_cols=278 Identities=9% Similarity=0.097 Sum_probs=182.4
Q ss_pred EeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 238 VWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 238 iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
||.+. +...+... +...|.+++|||||++|++++.+ + ++||++.+++.+.....+. ..
T Consensus 3 i~s~~-~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~----------~-~~iw~~~~~~~~~~~~~~~-~~------- 62 (355)
T 3vu4_A 3 LGSMI-TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK----------S-FEIYNVHPVAHIMSQEMRH-LS------- 62 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSS----------E-EEEEEETTEEEEEEEECSC-CC-------
T ss_pred ccccc-ccCCccccccCCCceEEEEECCCCCEEEEEcCC----------E-EEEEecCCcceeeeeecCC-eE-------
Confidence 44554 44444432 34459999999999999999877 4 7899998877655443321 11
Q ss_pred cCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
.+.|++ ++++++..+ +++|++||+.+++.+.... +...|.++.|+++...++ .++ .|.+
T Consensus 63 -------~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--------~~~--~i~i 123 (355)
T 3vu4_A 63 -------KVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--------YGD--VISV 123 (355)
T ss_dssp -------EEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--------ETT--EEEE
T ss_pred -------EEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--------EcC--EEEE
Confidence 578888 888876544 7899999999988776553 345689999988653332 222 3445
Q ss_pred EecCCc-cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 394 VQIPSK-EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 394 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
|++... +.+.... .+...++++
T Consensus 124 ~d~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~s 146 (355)
T 3vu4_A 124 FKFGNPWKRITDDI---------------------------------------------------------RFGGVCEFS 146 (355)
T ss_dssp EESSTTCCBSSCCE---------------------------------------------------------EEEEEEEEE
T ss_pred EECCCCceeeEEec---------------------------------------------------------cCCceEEEE
Confidence 554432 1111100 011223445
Q ss_pred eCCCEEEEE--EcCCCCCeEEEEEeeccccc---------CceeE-EEEeCCC--ceeEEEEccCCCeEEEEeccCCCce
Q 005140 473 PKGHRFAVI--HGDSPRPDISFYSMRTAQHA---------GRVSK-LTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQ 538 (712)
Q Consensus 473 p~g~~l~~~--~~d~~~~~v~i~d~~~~~~~---------~~~~~-~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~ 538 (712)
| .+++++ +.++ .|++||+.++... ....+ +..+.+| .|++++|+|+|++|++++. ||+
T Consensus 147 ~--~~la~~sg~~~g---~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~---d~~ 218 (355)
T 3vu4_A 147 N--GLLVYSNEFNLG---QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ---DGT 218 (355)
T ss_dssp T--TEEEEEESSCTT---CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET---TCS
T ss_pred c--cEEEEeCCCcCc---EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC---CCC
Confidence 5 667765 4466 8999999764300 00111 3445544 7999999999999999998 998
Q ss_pred -EEEEECCcceeeeec----cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee----------------
Q 005140 539 -LEFYNVDELETMATA----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---------------- 597 (712)
Q Consensus 539 -v~iwd~~~~~~~~~~----~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---------------- 597 (712)
|++||+.+++.+... |...|++++|+|+|++|++++. |+.++||++........
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-----KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-----TCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-----CCEEEEEEccCCCCcccccccceeecccccccc
Confidence 999999988877652 6689999999999999999999 99999999863211100
Q ss_pred ----------cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 598 ----------LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 598 ----------~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.......++|+|++..|++++.|+.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 011236689999999999988877553
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=209.79 Aligned_cols=299 Identities=12% Similarity=0.138 Sum_probs=189.4
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCC---CCcccccCCCcccceEEEcC--CCcEEEEEecCc-eEEeeccc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGAN 243 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~ 243 (712)
..+.+..++|+++ .+++...++.+.+|+..... .....+.+|...|++++|+| +|++|++++.++ |+||+..
T Consensus 12 ~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~- 89 (351)
T 3f3f_A 12 DLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED- 89 (351)
T ss_dssp SCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC-
T ss_pred cceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC-
Confidence 3455666677665 66777888999999984322 24456688999999999999 699999999999 8899998
Q ss_pred Cc---------ceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 244 TF---------NRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 244 ~~---------~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
.. ..+..+ .|. .|.+++|+|+ +++|++++.+ +.|++||+.+++.+..+.........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND----------GILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----------CEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC----------CcEEEecCCChHHhcccccccccccc
Confidence 44 334444 243 4999999999 9999999999 99999999988866555421110000
Q ss_pred CCCCCcCCCCcCeEEecCCC---CCEEEEec-CCeEEEEEcCCcee--cccccccccCeeeEEECCCC----CeEEEEee
Q 005140 311 GGTGGVAGVSWPVFRWGGGK---DKYFAKLG-KNMISVYETESFTL--IDKKSLKVENVMDFSWSPTD----PIISLFVP 380 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~d---g~~la~~~-d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~----~~la~~~~ 380 (712)
............++.|+| + +.++++++ ++.+.+|+...+.. +.....|...|.+++|+|++ ++|++
T Consensus 160 ~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--- 235 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCP-SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--- 235 (351)
T ss_dssp SCCCSSCSCCCEEEEECC-CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE---
T ss_pred ccccCCcccceeEEEecc-CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE---
Confidence 000000000011789999 7 88999888 88887777766554 33444577789999999998 78888
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
++.|+.+++|.+............ ........+++....++.+..... ....+.+...........+.
T Consensus 236 --~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 236 --GCKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSN--------TEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp --EETTSCEEEEEEEECC-------------------------------------------------CCSEEEEEEEEEC
T ss_pred --EcCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccc--------cceeeeecccccccEEEEEe
Confidence 778888888877654322111111 001111122233333222222111 01111111111112234566
Q ss_pred CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 461 NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 461 ~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+|...|.+++|+|++++|++++.|+ .|++|++.++.
T Consensus 304 ~h~~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~~ 339 (351)
T 3f3f_A 304 DHNGEVWSVSWNLTGTILSSAGDDG---KVRLWKATYSN 339 (351)
T ss_dssp TTSSCEEEEEECSSSCCEEEEETTS---CEEEEEECTTS
T ss_pred cccccEEEEEEcCCCCEEEEecCCC---cEEEEecCcCc
Confidence 8999999999999999999999999 99999997654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=218.27 Aligned_cols=257 Identities=11% Similarity=0.228 Sum_probs=202.1
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|.+++| ++++|++|+.+ +.|++||+.+++.+..+.+|...+. +++| ++++|
T Consensus 135 ~v~~~~~--d~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~h~~~v~-------------~l~~---~~~~l 186 (435)
T 1p22_A 135 GVYCLQY--DDQKIVSGLRD----------NTIKIWDKNTLECKRILTGHTGSVL-------------CLQY---DERVI 186 (435)
T ss_dssp CEEEEEC--CSSEEEEEESS----------SCEEEEESSSCCEEEEECCCSSCEE-------------EEEC---CSSEE
T ss_pred cEEEEEE--CCCEEEEEeCC----------CeEEEEeCCCCeEEEEEcCCCCcEE-------------EEEE---CCCEE
Confidence 4777766 89999999999 9999999999999999999887752 4544 67899
Q ss_pred EEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 335 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
++++ ||.|++|++.+++.+.....|...|.+++|++ ..+++ ++.++.+++|... +..
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-----~s~dg~i~vwd~~--~~~------------- 244 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVT-----CSKDRSIAVWDMA--SPT------------- 244 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEE-----EETTSCEEEEECS--SSS-------------
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEE-----eeCCCcEEEEeCC--CCC-------------
Confidence 9998 99999999999988777767777889988874 46666 5566665554332 111
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
.......+.+|...|.+++| ++++|++++.|+ .|++|
T Consensus 245 --------------------------------------~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg---~i~vw 281 (435)
T 1p22_A 245 --------------------------------------DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR---TIKVW 281 (435)
T ss_dssp --------------------------------------CCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEE
T ss_pred --------------------------------------CceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC---eEEEE
Confidence 00011234478889999998 789999999999 99999
Q ss_pred EeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCE
Q 005140 494 SMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRY 569 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~ 569 (712)
|+.++. .+..+.++ .+.++.| +++++++++. ||.|++||+.+++.+.. .|...+++++| +|.+
T Consensus 282 d~~~~~------~~~~~~~~~~~v~~~~~--~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 282 NTSTCE------FVRTLNGHKRGIACLQY--RDRLVVSGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp ETTTCC------EEEEEECCSSCEEEEEE--ETTEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred ECCcCc------EEEEEcCCCCcEEEEEe--CCCEEEEEeC---CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence 997654 45555544 6777777 5789999998 99999999998887765 56688999999 7899
Q ss_pred EEEEEccceeccccEEEEEecCc----------eeee--ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 570 VATAVTSVHEMENGFNIWSFNGK----------LLYR--TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g~----------~~~~--~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
|++++. |+.|++|++... .+.. .|...|.+++| ++..|++++.|+.|+
T Consensus 349 l~sg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 349 IVSGAY-----DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp EEEEET-----TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred EEEEeC-----CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 999999 999999998632 2332 36688999999 788999999998775
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-22 Score=224.76 Aligned_cols=327 Identities=12% Similarity=0.114 Sum_probs=211.9
Q ss_pred ceEEEEECCeeEEEecCCCCCCCc-ccccCCC-----------------cccceEEEcCCCcEEEEEecCceEEeecccC
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPE-PVYKRSY-----------------WTESFVQWSPLGTYLATVHRQGAAVWGGANT 244 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~-----------------~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~ 244 (712)
+.|+...+++ + +|+. ..++.+ ..+..|. ..+.+++|||| ++++++....+.+||.. +
T Consensus 36 ~~~~~~~~~~-i-~~d~-~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~~i~~~d~~-~ 110 (706)
T 2z3z_A 36 DNYVFIEGDD-L-VFNK-ANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQGGLVGFDML-A 110 (706)
T ss_dssp TEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETTEEEEEETT-T
T ss_pred CeEEEEeCCc-E-EEEC-CCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECCEEEEEECC-C
Confidence 3677777777 5 9998 344441 2222222 46899999999 66666666559999998 6
Q ss_pred cceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-----CceeeeccCCCcccccCCC---CC
Q 005140 245 FNRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-----GKVMRDFKGSADEFAVGGT---GG 315 (712)
Q Consensus 245 ~~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-----g~~~~~~~~~~~~~~~~~~---~~ 315 (712)
........+ ..+.+++|||||++|+++ .+ +.|++|++.+ ++..+....+...+..+.. ..
T Consensus 111 ~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~----------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 111 RKVTYLFDTNEETASLDFSPVGDRVAYV-RN----------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp TEEEEEECCTTCCTTCEECTTSSEEEEE-ET----------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred CceEEccCCcccccCCcCCCCCCEEEEE-EC----------CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 655444444 348999999999999996 45 6899999988 7766554443331100000 00
Q ss_pred cCCCCcCeEEecCCCCCEEEEec----------------------------------CCeEEEEEcCCceeccccc--cc
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG----------------------------------KNMISVYETESFTLIDKKS--LK 359 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~----------------------------------d~~i~iwd~~~~~~~~~~~--~~ 359 (712)
. + ....+.||| ||++|++++ +..|.+||+.++....... .+
T Consensus 180 ~-~-~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 180 F-G-IEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp T-T-CCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred c-C-CCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 0 0 001589999 999999875 3679999999876543221 23
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-----cceeEEECc--CCCEEEEEEcccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----SDCKMYWQS--SGDYLAVKVDRYT 432 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~--~g~~l~~~~~~~~ 432 (712)
...+..++|+|||+.|++..... ......|++|+..+.+.......... ....+.|+| +|++++++..++.
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~--~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNR--AQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECT--TSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred ceeEeeEEEECCCCEEEEEEeCC--CCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 34588999999999998743322 34456889999887632222111111 113468999 9998877665544
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEE-EEEeeCCCEEEEEEcCCC--CCeEEEEEeecccccCceeEEEE
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA-FAWEPKGHRFAVIHGDSP--RPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~-~~~sp~g~~l~~~~~d~~--~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
..||.++..+... ..+..|...+.+ ++|+|+|+.|++++.+.. ...|..|++.++. ...
T Consensus 335 ---------~~l~~~~~~~~~~--~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------~~~ 396 (706)
T 2z3z_A 335 ---------NHLYLYDTTGRLI--RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------TKD 396 (706)
T ss_dssp ---------CEEEEEETTSCEE--EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------CEE
T ss_pred ---------cEEEEEECCCCEE--EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------cee
Confidence 6788887444332 345567777877 799999999988887642 1245555554432 122
Q ss_pred e-CCCceeEEEEccCCCeEEEEeccC-CCceEEEEECCcce
Q 005140 510 L-KGKQANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDELE 548 (712)
Q Consensus 510 ~-~~~~v~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~~~ 548 (712)
+ ....+.+++|||||++|++++.+. ..+.|++||+.+++
T Consensus 397 l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 397 LTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2 234688999999999998875422 23679999998776
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=200.25 Aligned_cols=274 Identities=9% Similarity=0.051 Sum_probs=177.2
Q ss_pred CCCCceEEEEECCeeEEEecCCCCC---CCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC
Q 005140 179 EKARDQFVIRSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ 255 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~ 255 (712)
+.++...+++..+.++.+|+.. .. .....++.|..+|..++++||-.-|++..- ..++...
T Consensus 50 ~~~~~~~~~~~~~~~v~lw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~ 113 (356)
T 2w18_A 50 AGCKEPCIITACEDVVSLWKAL-DAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL---------------GNLEIRE 113 (356)
T ss_dssp ---CEEEEEEEESSEEEEEEES-SSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE---------------CSSSEEE
T ss_pred CCCCccEEEEeccceEEEcccC-CCccceeeEEEeccCceeEEEEEcCcccceeeeee---------------ccccccc
Confidence 5577778889999999999983 44 566678899999999999998755544321 1223345
Q ss_pred eeEEEecCC----CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 256 VKLIDFSPG----EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 256 v~~i~~Spd----g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
|..++|||| ++++++++.+ +.+|++.+|+.+.+ ..+|
T Consensus 114 v~sla~spd~~~~~~~l~s~g~~------------~~v~~l~~g~lv~ss~~g~-------------------------- 155 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSGNI------------KAVLGLTKRRLVSSSGTLS-------------------------- 155 (356)
T ss_dssp EEEECC------CCEEEEEEEEE------------EEEEEETTTEEEEEESSST--------------------------
T ss_pred eEEEEECCCccccccEEEeCCCe------------EEEEecCCCcEEEecccCC--------------------------
Confidence 889999999 9999997744 77887644443333 2222
Q ss_pred CCEEEEecCCeEEEEEc-CCceecccccccccCeeeEEECC---CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 331 DKYFAKLGKNMISVYET-ESFTLIDKKSLKVENVMDFSWSP---TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 331 g~~la~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp---~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
++.|++|++ ++++.+.....|...+..++|+| ++..|++ ++.|+.++|| ++.+.+.+....
T Consensus 156 --------d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS-----gS~D~TIkIW--Dl~TGk~l~tL~ 220 (356)
T 2w18_A 156 --------DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLG-----TTIMNNIVIW--NLKTGQLLKKMH 220 (356)
T ss_dssp --------TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEE-----EETTSEEEEE--ETTTCCEEEEEE
T ss_pred --------CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEE-----ecCCCcEEEE--ECCCCcEEEEEc
Confidence 566666666 34555555557777788888888 6788888 6677776655 444433322221
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEE--------
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF-------- 478 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l-------- 478 (712)
.+. .+...+.+++|+|+|.++
T Consensus 221 g~~---------------------------------------------------~~v~~v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 221 IDD---------------------------------------------------SYQASVCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp CCC------------------------------------------------------CCCEEEEEEETTEEEEEEC----
T ss_pred CCC---------------------------------------------------cceeeeEEEEECCCCCEEEEeccCCC
Confidence 100 011234445555555554
Q ss_pred ----EEEEcCCCCCeEEEEEeecccccCceeEEEEe----C-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 479 ----AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL----K-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 479 ----~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~----~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++++.|+ +|++|+..++. .+..+ + ++....+..+.+|.++++++. |++|+|||+.++++
T Consensus 250 ~w~laSGs~D~---tIklWd~~tgk------~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~---DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 250 KESESLRSPVF---QLIVINPKTTL------SVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT---SGTIAIWDLLLGQC 317 (356)
T ss_dssp --------CCE---EEEEEETTTTE------EEEEEEECCCTTCCCCEEEEEEETTEEEEEET---TSCEEEEETTTCSE
T ss_pred cceeeccCCCc---EEEEEECCCCE------EEEEEEeeccCCCcceeEccccCCCEEEEEcC---CCcEEEEECCCCcE
Confidence 4566677 99999987654 22222 2 333233344445888999988 99999999999998
Q ss_pred eee--cccccee-eEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 550 MAT--AEHFMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 550 ~~~--~~~~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+.+ .|...+. .++|||||++|++|+. |++|+||++
T Consensus 318 l~tL~gH~~~vvs~vafSPDG~~LaSGS~-----D~TIklWd~ 355 (356)
T 2w18_A 318 TALLPPVSDQHWSFVKWSGTDSHLLAGQK-----DGNIFVYHY 355 (356)
T ss_dssp EEEECCC--CCCCEEEECSSSSEEEEECT-----TSCEEEEEE
T ss_pred EEEecCCCCCeEEEEEECCCCCEEEEEEC-----CCcEEEecC
Confidence 887 3555444 5899999999999999 999999996
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=202.53 Aligned_cols=255 Identities=10% Similarity=0.062 Sum_probs=186.7
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc--------Ccceeeee--c
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN--------TFNRLMRY--A 252 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~--------~~~~~~~~--~ 252 (712)
.++.++.|+++.+|+. ..++....+. ...|.++.|+|+ +++++.|+ +++|+..+ +...+..+ .
T Consensus 50 ~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 5677778999999998 4555555555 467888999998 99999998 78997651 22222222 2
Q ss_pred CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecC
Q 005140 253 HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 253 ~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
|. .|.+++|+| ++++|++++.| ++|++||+.+++.+..+..+.. .+. +++|+|
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~~wd~~~~~~~~~~~~~~~~~i~-------------~~~~~p 180 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNR----------GTIGFQSYEDDSQYIVHSAKSDVEYS-------------SGVLHK 180 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETT----------CCEEEEESSSSCEEEEECCCSSCCCC-------------EEEECT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCC----------CcEEEEECCCCcEEEEEecCCCCceE-------------EEEECC
Confidence 33 499999999 99999999999 9999999999998776644433 221 799999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceec-ccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLI-DKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++.+|++++ |+.|++||+.++..+ ..... |...|.+++|+|++.+|++ ++ ++ .|.+|++...+.+...
T Consensus 181 -dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s-----~~-~~--~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 181 -DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV-----EC-DQ--TVVCFDLRKDVGTLAY 251 (343)
T ss_dssp -TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE-----EE-SS--BEEEEETTSSTTCBSS
T ss_pred -CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE-----Ee-CC--eEEEEEcCCCCcceee
Confidence 999999988 999999999988766 45555 7788999999999999998 55 33 5666777665543322
Q ss_pred ee-----eeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee---CCC
Q 005140 406 NL-----FSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP---KGH 476 (712)
Q Consensus 406 ~~-----~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp---~g~ 476 (712)
.. .......+.|+|+|++|++++. ++. +.+|++........ . .++..++|+| +++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~---------i~v~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS---------LTIYKFDKKTKNWT---K----DEESALCLQSDTADFT 315 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTE---------EEEEEECTTTCSEE---E----EEEEECCC----CCCC
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCc---------EEEEEEcccccceE---e----cCceeEecCccccccc
Confidence 21 1111134899999999999887 655 78998865433221 1 4567788888 888
Q ss_pred EEEEEEcCCCCCeEEEEEe
Q 005140 477 RFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~ 495 (712)
.+++++.++ .+.++-.
T Consensus 316 ~l~~~~~d~---~~~~~~~ 331 (343)
T 3lrv_A 316 DMDVVCGDG---GIAAILK 331 (343)
T ss_dssp EEEEEEETT---EEEEEEE
T ss_pred eeEEEecCC---ceEEEEe
Confidence 999999888 6776543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-20 Score=192.95 Aligned_cols=288 Identities=11% Similarity=0.113 Sum_probs=195.8
Q ss_pred EEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 259 IDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 259 i~~Spdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
..|++++++ +++.+.+ +.|.+||+.+++.+..+..+.... .++|+| +|++++.+
T Consensus 3 ~~~~~~~~~~~v~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~l~~~ 57 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL----------RRISFFSTDTLEILNQITLGYDFV--------------DTAITS-DCSNVVVT 57 (331)
T ss_dssp ----CCCCEEEEEEGGG----------TEEEEEETTTCCEEEEEECCCCEE--------------EEEECS-SSCEEEEE
T ss_pred eeEcCCCCEEEEEecCC----------CeEEEEeCcccceeeeEEccCCcc--------------eEEEcC-CCCEEEEE
Confidence 456776665 5666666 899999999999888776553332 589999 99966655
Q ss_pred c--CCeEEEEEcCCcee-cccccccccCeeeEEECCCCCeEEEEeecCCCCC-CCeEEEEEecCCccceeeeeeeeecce
Q 005140 338 G--KNMISVYETESFTL-IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 338 ~--d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
+ ++.|.+||+.++.. ......+.....+++|+|+|++|++ +..+ +...|++|+..+.+.+..... .....
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 131 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT-----VTGLNHPFNMQSYSFLKNKFISTIPI-PYDAV 131 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE-----CCCSSSSCEEEEEETTTTEEEEEEEC-CTTEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE-----ecCCCCcccEEEEECCCCCeEEEEEC-CCCcc
Confidence 5 78999999998876 4333333333444999999999885 3333 334788889887765554332 22345
Q ss_pred eEEECcCCCEEEEEEccccccccccccc-EEEEEEecCCcceeE-EEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTG-FELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDI 490 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v 490 (712)
.+.|+|+|+++++..... .. +.+|++...+..... .....+...+..++|+|+|++++++.. ++ .|
T Consensus 132 ~~~~spdg~~l~~~~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~---~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSS--------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN---SI 200 (331)
T ss_dssp EEEECTTSSCEEEEEETT--------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT---EE
T ss_pred ceEECCCCCEEEEEecCC--------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC---eE
Confidence 688999999877765432 23 678887754432211 111133556889999999998877765 45 89
Q ss_pred EEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee--eeec------cc---cce
Q 005140 491 SFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MATA------EH---FMA 558 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~--~~~~------~~---~~v 558 (712)
.+||+.++.. ...+..+. +..+..++|+|+|++|++++.+ ++.|.+||+.+++. +... +. ...
T Consensus 201 ~v~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 201 GILETQNPEN---ITLLNAVGTNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp EEEECSSTTS---CEEEEEEECSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred EEEECCCCcc---cceeeeccCCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 9999976542 11244444 3467889999999988776531 68899999998776 2211 11 223
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 597 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~ 597 (712)
..++|+|||++|++++.. ++.+.+|++.+..+...
T Consensus 276 ~~~~~spdg~~l~v~~~~----~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 276 NQMALNKTETKLFISANI----SRELKVFTISGKVVGYV 310 (331)
T ss_dssp CCEEECTTSSEEEEEETT----TTEEEEEETTSCEEEEC
T ss_pred cceEECCCCCEEEEecCC----CCcEEEEEecCCcccce
Confidence 568999999999877763 67999999987665443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=220.84 Aligned_cols=343 Identities=10% Similarity=0.046 Sum_probs=210.6
Q ss_pred cCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCc---ccceEEEcCCCcEEEEEecC---------c-eEEeeccc
Q 005140 177 TDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPLGTYLATVHRQ---------G-AAVWGGAN 243 (712)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spdg~~lat~~~~---------~-i~iw~~~~ 243 (712)
..|+|+ ++....++++.+|+. ..++....+..|.. .+.+++|||||++||+++.+ + +.+||+.
T Consensus 24 ~spdg~--~~~~~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~- 99 (723)
T 1xfd_A 24 WISDTE--FIYREQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP- 99 (723)
T ss_dssp BSSSSC--BCCCCSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS-
T ss_pred EcCCCc--EEEEeCCCCEEEEEC-CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC-
Confidence 345565 444456788889998 45555566666654 48999999999999999863 3 6799998
Q ss_pred Cccee--eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccc-ccCCCCCc--
Q 005140 244 TFNRL--MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEF-AVGGTGGV-- 316 (712)
Q Consensus 244 ~~~~~--~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~-~~~~~~~~-- 316 (712)
++... ... .+. .+.+++|||||++||+++.. .|++||+.+++..+....+...+ ..+....+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~-----------~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-----------NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-----------EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred CCceEeccCCccccccccccEECCCCCEEEEEECC-----------eEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 55431 111 122 28899999999999998864 79999998888766554433211 00000000
Q ss_pred ---CCCCcCeEEecCCCCCEEEEec-CC----------------------------------eEEEEEcCCceecccccc
Q 005140 317 ---AGVSWPVFRWGGGKDKYFAKLG-KN----------------------------------MISVYETESFTLIDKKSL 358 (712)
Q Consensus 317 ---~~~~~~~~~~s~~dg~~la~~~-d~----------------------------------~i~iwd~~~~~~~~~~~~ 358 (712)
.+ ....++||| ||++|++++ ++ .|.+||+.++........
T Consensus 169 ee~~~-~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~ 246 (723)
T 1xfd_A 169 EEILK-THIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (723)
T ss_dssp HTTSS-SSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred EEecc-CcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC
Confidence 00 001589999 999999887 32 789999987764322222
Q ss_pred c------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-e--c--ceeEEECcCCCEEEEE
Q 005140 359 K------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-V--S--DCKMYWQSSGDYLAVK 427 (712)
Q Consensus 359 ~------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~--~~~~~~s~~g~~l~~~ 427 (712)
+ ...+..++|||||++|++.... ......|++|+..+.+......... . . ...+.|+|+|+.|++.
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNR---AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEET---TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcC---CCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 1 3458899999999988764321 2345678899987766433222111 1 1 1257899999988876
Q ss_pred -EcccccccccccccEEEEEEe-cCCcc-eeEEEecCCCCceEE-EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 428 -VDRYTKTKKSTYTGFELFRIK-ERDIP-IEVLELDNKNDKIIA-FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 428 -~~~~~~~~~~~~~~~~l~~l~-~~~~~-~~~~~l~~h~~~v~~-~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
+..... ......||.++ ..+.. .....+..+...+.. ++|+|+|++|++.+.+.....++||++......
T Consensus 324 ~~~~~~~----~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~-- 397 (723)
T 1xfd_A 324 RAIPQGG----RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-- 397 (723)
T ss_dssp EEECCSS----SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC--
T ss_pred EecccCC----CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC--
Confidence 322110 00124566665 22221 001233333444554 699999999998877631127889998643221
Q ss_pred eeEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 504 VSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 504 ~~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
....+. ...+..++|||||++|++...+...-...+++..++
T Consensus 398 --~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 398 --NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp --CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred --CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCC
Confidence 111222 235788999999999988764321112334454433
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=211.31 Aligned_cols=254 Identities=11% Similarity=0.022 Sum_probs=153.4
Q ss_pred ceEEEEECCeeEEEecCCCCC----CCcccccCCCcccceEEEcC--------CCcEEEEEecCc-eEEeecccCcceee
Q 005140 183 DQFVIRSGTDTEVLWNDARHL----KPEPVYKRSYWTESFVQWSP--------LGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~v~~v~~Sp--------dg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
..++..+.|+++.+|+..... .+...+.+|...|++++|+| ||++||+++.|+ |+|||+........
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 356677789999999973221 23346789999999999998 899999999999 88999983333334
Q ss_pred eec-CCCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc--------------cCCC
Q 005140 250 RYA-HPQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA--------------VGGT 313 (712)
Q Consensus 250 ~~~-~~~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~--------------~~~~ 313 (712)
.+. +..|.+++|+|++. +|++++.| ++|++||+.+++.......+..... ....
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d----------~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERN----------GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETT----------SEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCC----------CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 444 45599999999885 79999999 9999999988876544432211100 0000
Q ss_pred CCcCCCCcCeEEec-CCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 314 GGVAGVSWPVFRWG-GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 314 ~~~~~~~~~~~~~s-~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
+.... ..++.|+ + +++.|++++ |+++++||+..+........+...+..+.++|+...+.
T Consensus 252 ~~~~~--v~~v~~~~~-dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------- 313 (393)
T 4gq1_A 252 GIASS--LANVRWIGS-DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS--------------- 313 (393)
T ss_dssp CCSSS--CSEEEEETT-TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC---------------
T ss_pred ccccc--ceeeeeecC-CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc---------------
Confidence 01111 1156775 7 999999999 99999999886654432222222222333332211110
Q ss_pred EEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 392 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
.+...+ ...|
T Consensus 314 ---------------------------------------------------------------------~~~~~~-~~~~ 323 (393)
T 4gq1_A 314 ---------------------------------------------------------------------LFPSLL-GACP 323 (393)
T ss_dssp ---------------------------------------------------------------------SSCCSS-CCEE
T ss_pred ---------------------------------------------------------------------ccCcce-eEEE
Confidence 011111 2233
Q ss_pred ee-CCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 472 EP-KGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 sp-~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+| .+. ++++++.|+ .|++||+.++... ....-...+|.+++|||||++||+++ ++.+.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg---~V~lwd~~~~~~~----~~~~~~~~~V~svafspdG~~LA~as----~~Gv~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHG---LIQLINTYEKDSN----SIPIQLGMPIVDFCWHQDGSHLAIAT----EGSVLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTT---EEEEEETTCTTCC----EEEEECSSCEEEEEECTTSSEEEEEE----SSEEEEEEEG
T ss_pred ccCCCCEEEEEECCCC---EEEEEECCCCcEE----EEecCCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEEe
Confidence 33 333 455556688 9999999766532 22222345899999999999999998 4557777654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=194.64 Aligned_cols=270 Identities=11% Similarity=0.101 Sum_probs=180.8
Q ss_pred eeEEEecCCCC---EEEEEcCCCCCCCcCCCccEEEEEEccCC---ceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 256 VKLIDFSPGEK---YLVTYSSHEPSNPRDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 256 v~~i~~Spdg~---~l~t~s~d~~~~~~~~~~~~I~iwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
+.++-|-.-|- .+++++.. .|++|+..++ ++++++..+...+. .+.++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-----------~v~lw~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~- 96 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-----------VVSLWKALDAWQWEKLYTWHFAEVPVL-------------QIVPVP- 96 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-----------EEEEEEESSSSBEEEEEEEECCSSCEE-------------EECCCT-
T ss_pred EeeeeeccCCCCccEEEEeccc-----------eEEEcccCCCccceeeEEEeccCceeE-------------EEEEcC-
Confidence 55666655443 57777776 8999999999 88999999987763 578888
Q ss_pred CCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCC----CCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 330 KDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPT----DPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 330 dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~----~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
|..-|++..=| .++...|..++++|+ +++++. ++ ...++ +.++
T Consensus 97 ~~~~~~~~~~~----------------~~~~~~v~sla~spd~~~~~~~l~s-----~g--~~~~v--~~l~-------- 143 (356)
T 2w18_A 97 DVYNLVCVALG----------------NLEIREIRALFCSSDDESEKQVLLK-----SG--NIKAV--LGLT-------- 143 (356)
T ss_dssp TCCSCEEEEEC----------------SSSEEEEEEECC------CCEEEEE-----EE--EEEEE--EEET--------
T ss_pred cccceeeeeec----------------cccccceEEEEECCCccccccEEEe-----CC--CeEEE--EecC--------
Confidence 76544443311 134455889999999 888887 22 22333 3322
Q ss_pred eeeeecceeEEECcCCCEEEEEE--cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee---CCCEEEE
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP---KGHRFAV 480 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp---~g~~l~~ 480 (712)
+|+.+.+.. .+.. +++|.+...+.... .+.+|...+..++|+| ++.+|++
T Consensus 144 --------------~g~lv~ss~~g~d~~---------V~~~~~s~dG~~~~--s~~~~~~~v~~l~fs~~~g~~~~LaS 198 (356)
T 2w18_A 144 --------------KRRLVSSSGTLSDQQ---------VEVMTFAEDGGGKE--NQFLMPPEETILTFAEVQGMQEALLG 198 (356)
T ss_dssp --------------TTEEEEEESSSTTCE---------EEEEEECTTSCEEE--EEEECCCSSCEEEEEEEETSTTEEEE
T ss_pred --------------CCcEEEecccCCCCc---------EEEEEECCCCceee--eeccCCCceeeEEeeccCCCCceEEE
Confidence 233333322 1222 56777755443332 3446788888999999 7799999
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeCCC-----ceeEEEEccCCCeEEEEec---------cCCCceEEEEECCc
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-----QANALFWSPSGRFIVLAGL---------KGFNGQLEFYNVDE 546 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~l~~spdg~~l~~~~~---------~~~dg~v~iwd~~~ 546 (712)
++.|+ +|+|||+.+++ .+.++.++ .+.+++|||+|+++++++. +..|++|++||..+
T Consensus 199 gS~D~---TIkIWDl~TGk------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 199 TTIMN---NIVIWNLKTGQ------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp EETTS---EEEEEETTTCC------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred ecCCC---cEEEEECCCCc------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 99999 99999998765 56666532 3567899999998855321 22389999999998
Q ss_pred ceeeee-------ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--ccccee-eeEEecCCCCCC
Q 005140 547 LETMAT-------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFF-QFLWRPRPPSFL 615 (712)
Q Consensus 547 ~~~~~~-------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~-~~~w~p~~~~l~ 615 (712)
++.+.. +|...+.+..++ |.++|+++. |++|+|||+. |+.+... |.+.+. .++|+|++++|+
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~-----DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT-----SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET-----TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC-----CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 887643 222333333333 778999999 9999999997 5666554 445555 589999999999
Q ss_pred ChhhHHHHH
Q 005140 616 TPEKEEEIA 624 (712)
Q Consensus 616 s~~~d~~i~ 624 (712)
+++.|++||
T Consensus 343 SGS~D~TIk 351 (356)
T 2w18_A 343 AGQKDGNIF 351 (356)
T ss_dssp EECTTSCEE
T ss_pred EEECCCcEE
Confidence 999998775
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=203.34 Aligned_cols=307 Identities=10% Similarity=-0.003 Sum_probs=194.3
Q ss_pred EecCCCCCCCcccccCCCcccce-----EEEcCCCcEEEEEec-Cc---eEEeecccCcceeeeec-CCC-eeEEEecCC
Q 005140 196 LWNDARHLKPEPVYKRSYWTESF-----VQWSPLGTYLATVHR-QG---AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPG 264 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~-----v~~Spdg~~lat~~~-~~---i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spd 264 (712)
+|-.+..+.....++.|...+.. ++|||||++||+++. ++ +.+|+.. ++....... +.. +..+.||||
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN-TQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TCEEEECCCSSCBCSSSCEECTT
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC-CCceEEeeeCCCCCccceEEcCC
Confidence 34444556666667766654444 899999999999987 56 6688888 555444333 332 457889999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec------
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------ 338 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~------ 338 (712)
|++|++++.+ +.|++||+.+++....+..+..... .....+++ ++++++...
T Consensus 92 g~~l~~~~~~----------~~l~~~d~~~g~~~~~~~~~~~~~~-----------~~~~~~~~-dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 92 DDALFYVKDG----------RNLMRVDLATLEENVVYQVPAEWVG-----------YGTWVANS-DCTKLVGIEIRREDW 149 (388)
T ss_dssp SSEEEEEETT----------TEEEEEETTTCCEEEEEECCTTEEE-----------EEEEEECT-TSSEEEEEEEEGGGC
T ss_pred CCEEEEEeCC----------CeEEEEECCCCcceeeeechhhccc-----------ccceeECC-CCCeeccccccCccc
Confidence 9999999988 7899999999987665554433220 00234589 999887431
Q ss_pred -----------------CCeEEEEEcCCceecccccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 339 -----------------KNMISVYETESFTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 339 -----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+..|.+|++.+++... ...+...+..++||| +|+.|++..... .......||+++.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGP-HDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSC-TTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecC-CCCCcceEEEEeCCCCc
Confidence 4679999998875432 223334578899999 998888742210 00113344444432111
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC--CceEEEEEeeCCCEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN--DKIIAFAWEPKGHRF 478 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~--~~v~~~~~sp~g~~l 478 (712)
. ..+..+. ..+..++|||||+.|
T Consensus 228 -----------------------------------------------------~--~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 228 -----------------------------------------------------M--RKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp -----------------------------------------------------C--EESCCCCTTEEEEEEEECTTSSCE
T ss_pred -----------------------------------------------------e--EEeeeCCCCcccccceECCCCCEE
Confidence 0 1111222 246678999999988
Q ss_pred EEEEcCCCCC--eEEEEEeecccccCceeEEEEeCCC-----ceeEEEEccCCCeEEEEecc------CCCceEEEEECC
Q 005140 479 AVIHGDSPRP--DISFYSMRTAQHAGRVSKLTTLKGK-----QANALFWSPSGRFIVLAGLK------GFNGQLEFYNVD 545 (712)
Q Consensus 479 ~~~~~d~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~l~~spdg~~l~~~~~~------~~dg~v~iwd~~ 545 (712)
++.+...... .|++||+.++.. ..+..+... ....++|||||+.|++.... ..+..|++||+.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred EEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 7766532222 399999876542 244444431 12335799999998875321 126789999999
Q ss_pred cceeeeec-ccc-----------ceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 546 ELETMATA-EHF-----------MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 546 ~~~~~~~~-~~~-----------~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++..... +.. .+.+++|||||++|++++.. ++...||.++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~----~g~~~l~~~~ 381 (388)
T 3pe7_A 329 NGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV----HGKPALYLAT 381 (388)
T ss_dssp TTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT----TSSCEEEEEE
T ss_pred CCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC----CCceeEEEEE
Confidence 87664432 223 47889999999999988863 5666677654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=188.61 Aligned_cols=252 Identities=12% Similarity=0.169 Sum_probs=181.2
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC-ceeccccccc-ccC
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES-FTLIDKKSLK-VEN 362 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~-~~~~~~~~~~-~~~ 362 (712)
+.|++||+.+++..... .+...+. +++|+| +|++|++++++.|.+|++.+ +........+ ...
T Consensus 22 ~~i~~~d~~~~~~~~~~-~~~~~v~-------------~~~~sp-dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVW-QTPELFE-------------APNWSP-DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp EEEEEEETTTTEEEEEE-EESSCCE-------------EEEECT-TSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred eeEEEEeCCCCceeeec-cCCcceE-------------eeEECC-CCCEEEEEcCCeEEEEeCCCCCCceEecccccccc
Confidence 89999999888765433 3443332 699999 99999999999999999998 7654333233 245
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEE-Eccccccccccccc
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK-VDRYTKTKKSTYTG 441 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~ 441 (712)
+.+++|+|++++|++... ..++...||.++........... ......+.|+|+|++|++. ..++.
T Consensus 87 ~~~~~~spdg~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~--------- 152 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDK---VEFGKSAIYLLPSTGGTPRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQV--------- 152 (297)
T ss_dssp CSCCEECTTSSEEEEEEC---TTTSSCEEEEEETTCCCCEECCS--SSSEEEEEECTTSSEEEEEEEETTE---------
T ss_pred ccceEECCCCCEEEEEEe---CCCCcceEEEEECCCCceEEeec--CCCccceEECCCCCEEEEEECCCCc---------
Confidence 889999999999998321 13467899999876654222111 1124456899999998854 44433
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCC--CceeEE
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANAL 518 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l 518 (712)
+.+|.++..+... ..+..|...+.+++|+|+|++|++++. ++ .+.+|++..... .+..+.. ..+..+
T Consensus 153 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 153 FDIYSMDIDSGVE--TRLTHGEGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGS-----SVERITDSAYGDWFP 222 (297)
T ss_dssp EEEEEEETTTCCE--EECCCSSSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSS-----CEEECCCCSEEEEEE
T ss_pred eEEEEEECCCCcc--eEcccCCCccccceECCCCCEEEEEecCCC---CccEEEECCCCC-----CcEEEecCCcccCCe
Confidence 6899887654332 445567888999999999999998875 56 788888863222 2334443 357889
Q ss_pred EEccCCCeEEEEeccC--------CCceEEEEECCccee--eee--ccccceeeEEECCCCCEEEEEEc
Q 005140 519 FWSPSGRFIVLAGLKG--------FNGQLEFYNVDELET--MAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~--------~dg~v~iwd~~~~~~--~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+|+|+|++|++++... .++.|++||+.+++. +.. .+...+.+++|+|+|++|++++.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 9999999999887621 126799999987655 322 45578899999999999999987
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=221.01 Aligned_cols=339 Identities=10% Similarity=0.095 Sum_probs=202.7
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~----~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++|||||++++++. ++ +.+|+.. +++....+. +. .+.+++|||||++|++++..... -.....+.|++|
T Consensus 19 ~~~~~s~dg~~~~~~~-d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQEYLHQSA-DNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIY 95 (719)
T ss_dssp CCCEESSSSEEEEECT-TSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEE
T ss_pred CccEECCCCeEEEEcC-CCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEE
Confidence 3689999998777664 55 8999998 665554443 22 38999999999999998761000 000001789999
Q ss_pred EccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc-cccc-------
Q 005140 291 DVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK-SLKV------- 360 (712)
Q Consensus 291 d~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~-~~~~------- 360 (712)
|+.+|+.+ ..+. .... .++||| ||++||++.++.|++|++.++...... ..+.
T Consensus 96 d~~~g~~~~~~~l~--~~~~--------------~~~~SP-DG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 96 DLSNGEFVRGNELP--RPIQ--------------YLCWSP-VGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp ETTTTEECCSSCCC--SSBC--------------CEEECS-STTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred ECCCCccccceecC--cccc--------------cceECC-CCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 99888763 2222 1111 589999 999999999999999999877643211 0111
Q ss_pred ----------cCeeeEEECCCCCeEEEEeecCC---------------------------CCCCCeEEEEEecCCccce-
Q 005140 361 ----------ENVMDFSWSPTDPIISLFVPELG---------------------------GGNQPARVSLVQIPSKEEL- 402 (712)
Q Consensus 361 ----------~~v~~~~~sp~~~~la~~~~~~~---------------------------~~~~~~~i~~~~~~~~~~~- 402 (712)
....+++|||||+.|++.....+ .......|++|++.+.+..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 11258999999999998543210 0112347888888776532
Q ss_pred --eee-----eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEe--cCCccee-EEE--ecCCCCceE---
Q 005140 403 --RQK-----NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK--ERDIPIE-VLE--LDNKNDKII--- 467 (712)
Q Consensus 403 --~~~-----~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~-~~~--l~~h~~~v~--- 467 (712)
... ..+......+.|+|||+.+++...+... ...+.+|++. ....... ... ..+|...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~-----~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 239 PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN-----VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT-----EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSS
T ss_pred eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC-----eEEEEEEcccCCCCCCceEEEEecccccCCceEcccc
Confidence 110 0122334567899998766654433210 1123444421 2211111 010 025666666
Q ss_pred --EEEEeeCCCEEEEE-EcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEecc--CCCceEE
Q 005140 468 --AFAWEPKGHRFAVI-HGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLK--GFNGQLE 540 (712)
Q Consensus 468 --~~~~sp~g~~l~~~-~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~--~~dg~v~ 540 (712)
+++|+|||+.|++. +.......|.+|++.++. ...+.. ..+..+.++ +|+.|++.+.. ..++...
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~ 385 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN 385 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence 88999999987764 322223367777775433 122322 246677777 88888887752 1136677
Q ss_pred EEECC--cc----eeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 541 FYNVD--EL----ETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 541 iwd~~--~~----~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|.+. ++ +.+.. .+...+..+.|||+|++++....... ...+.+|++.
T Consensus 386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~--~p~~~l~d~~ 442 (719)
T 1z68_A 386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG--IPISTLHDGR 442 (719)
T ss_dssp EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS--SCEEEEECSS
T ss_pred EEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC--CCeEEEEECC
Confidence 77664 33 22221 13456778999999998886554200 1346667653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-20 Score=189.25 Aligned_cols=278 Identities=10% Similarity=0.088 Sum_probs=197.2
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
..+..++|||+|++|++++.+... ....+.|.+||..+++.++.+....... .+.|+| +|++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~ 102 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRK---LDKGGVVYRLDPVTLEVTQAIHNDLKPF--------------GATINN-TTQT 102 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTT---TEESEEEEEECTTTCCEEEEEEESSCCC--------------SEEEET-TTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcC---CCCCccEEEEcCCCCeEEEEEecCCCcc--------------eEEECC-CCCE
Confidence 358899999999999888754110 0012789999999999888886554433 589999 9996
Q ss_pred EEEec--CCeEEEEEcCCceeccccccccc---------CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 334 FAKLG--KNMISVYETESFTLIDKKSLKVE---------NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 334 la~~~--d~~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
++.+. ++.|.+||..+++.+.....+.. .+.+++|+|+++.+++ ++......|++|+..+.+.+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI-----SGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEE-----EEESSSCEEEEEETTTTEEE
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEE-----EecCCCceEEEEcCCCCceE
Confidence 65554 79999999998887654433221 2688999999998877 32234567889998877765
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe--cCCCCceEEEEEeeCCCEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL--DNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~~ 480 (712)
............+.|+|+|+++++...++. +.+|++... .....+.. .++...+.+++|+|+|+++++
T Consensus 178 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---------i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALDSEGKRLYTTNADGE---------LITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EEECCCCTTCCCCEEETTTTEEEEECTTSE---------EEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EEecCCCCccceEEECCCCCEEEEEcCCCe---------EEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 554433333556789999999998776543 455554322 12222222 124556888999999998888
Q ss_pred EEcC-CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccce
Q 005140 481 IHGD-SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMA 558 (712)
Q Consensus 481 ~~~d-~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v 558 (712)
+..+ + .|.+||+.++. .+..+.......++|+|+|+++++++.. ++.|.+||..+++.+.... ...+
T Consensus 248 ~~~~~~---~v~~~d~~~~~------~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~ 316 (353)
T 3vgz_A 248 TDSKAA---EVLVVDTRNGN------ILAKVAAPESLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHP 316 (353)
T ss_dssp EESSSS---EEEEEETTTCC------EEEEEECSSCCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEE
T ss_pred EeCCCC---EEEEEECCCCc------EEEEEEcCCCceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCC
Confidence 8765 4 89999997654 3444443334679999999987776531 7999999999888876533 3567
Q ss_pred eeEEECCCCCEEEEEEc
Q 005140 559 TDVEWDPTGRYVATAVT 575 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~ 575 (712)
.+++|+|+|++|+++..
T Consensus 317 ~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred CeEEEcCCCCEEEEEEc
Confidence 89999999998877766
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-20 Score=212.01 Aligned_cols=339 Identities=8% Similarity=-0.003 Sum_probs=211.9
Q ss_pred CCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCc---ccceEEEcCCCcEEEEEec---------Cc-eEEeecccC
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPLGTYLATVHR---------QG-AAVWGGANT 244 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spdg~~lat~~~---------~~-i~iw~~~~~ 244 (712)
.|++ +++....++.+.+|+. ..+.....+.+|.. .+.+++|||||++||+++. ++ +.+||+. +
T Consensus 24 s~dg--~~~~~~~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~ 99 (719)
T 1z68_A 24 ISGQ--EYLHQSADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-N 99 (719)
T ss_dssp SSSS--EEEEECTTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-T
T ss_pred CCCC--eEEEEcCCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-C
Confidence 3555 5777777889999998 44554444444433 3899999999999999876 45 8899998 5
Q ss_pred ccee--eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC-CcccccCCCCCc-----
Q 005140 245 FNRL--MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS-ADEFAVGGTGGV----- 316 (712)
Q Consensus 245 ~~~~--~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~-~~~~~~~~~~~~----- 316 (712)
++.+ ..+ ...+.+++|||||++||++. + +.|++|++.+++..+..... ...+..+....+
T Consensus 100 g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-~----------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 100 GEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-Q----------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp TEECCSSCC-CSSBCCEEECSSTTCEEEEE-T----------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred Cccccceec-CcccccceECCCCCEEEEEE-C----------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 5542 222 24589999999999999986 4 58999999888765533222 111100000000
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CC----------------------------------eEEEEEcCCceec---c----
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KN----------------------------------MISVYETESFTLI---D---- 354 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~----------------------------------~i~iwd~~~~~~~---~---- 354 (712)
.+. ...++||| ||++||+++ +. .|.+||+.++... .
T Consensus 168 ~~~-~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 168 LAT-KYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp TCS-SCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred ccC-cccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 000 01589999 999999887 42 7889999877642 1
Q ss_pred -cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe----cCCccceeee----eeeeecce-----eEEECcC
Q 005140 355 -KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ----IPSKEELRQK----NLFSVSDC-----KMYWQSS 420 (712)
Q Consensus 355 -~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~----~~~~~~~~-----~~~~s~~ 420 (712)
....+...+..++||||++++++.. .. .+....|++++ ..+.+..... ..+..... .+.|+|+
T Consensus 246 ~~~~~~~~~~~~~~~SpD~~~~~~~~-~~--~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 246 AMIASSDYYFSWLTWVTDERVCLQWL-KR--VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp HHHHTSCEEEEEEEESSSSEEEEEEE-ES--STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred ccCCCCcceEEEeEEeCCCeEEEEEe-cc--ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1112344588999999977655522 12 34557899998 6555432222 11111111 5689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC--CCCCeEEEEEeecc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD--SPRPDISFYSMRTA 498 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d--~~~~~v~i~d~~~~ 498 (712)
|+.+++...+.. +...||.++..+.. ...+..+...+..+.++ +++.+++.+.+ ......++|.+...
T Consensus 323 g~~l~~~~~~~~-------g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 323 AISYYKIFSDKD-------GYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp SSCEEEEEECTT-------SCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred CCeEEEEEEccC-------CceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 998776433221 11345555543332 24455556678888877 99999988876 11116788887642
Q ss_pred cccCceeEEEEeC------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 499 QHAGRVSKLTTLK------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 499 ~~~~~~~~~~~~~------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
.+... ...+. ...+..+.|||+|++++..+.+.....+.+||+.+++.+
T Consensus 393 ~g~~~---~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 393 SYPPS---KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SSSCC---EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCCCC---ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 21100 12222 124678999999998887554332357889998776643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-20 Score=189.73 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=192.1
Q ss_pred cEEEEEecCc-eEEeecccCcceeeeecCC----CeeEEEecCCCCEEEEE-cCCCCCCCcCCCccEEEEEEccCCceee
Q 005140 226 TYLATVHRQG-AAVWGGANTFNRLMRYAHP----QVKLIDFSPGEKYLVTY-SSHEPSNPRDANRVVINIFDVRTGKVMR 299 (712)
Q Consensus 226 ~~lat~~~~~-i~iw~~~~~~~~~~~~~~~----~v~~i~~Spdg~~l~t~-s~d~~~~~~~~~~~~I~iwd~~~g~~~~ 299 (712)
++|++++.++ |.+||.. +++.+..+... .+..++|||+|++|+++ ..+ +.|.+||+.+++.+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~----------~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS----------ESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT----------TEEEEEETTTCCEEE
T ss_pred cEEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC----------CeEEEEECCCCCeEe
Confidence 5788888888 8899998 77777766533 48899999999877544 445 789999999999887
Q ss_pred eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-------------CCeEEEEEcCCceecccccccccCeeeE
Q 005140 300 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-------------KNMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
.+........ ...+ . .++|+| +|++++++. ++.|.+|++.+++.+..... ...+.++
T Consensus 71 ~~~~~~~~~~---~~~~----~-~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 71 RIDLSTPEER---VKSL----F-GAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp EEECCBTTEE---EECT----T-CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred eEEcCCcccc---cccc----c-ceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 7764320000 0000 1 589999 999888773 68999999998876644322 3357889
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc-----------
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK----------- 435 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~----------- 435 (712)
+|+|++++|++ + + ..|++|+..+.+.+....... ....+.|+|+|.++++.........
T Consensus 141 ~~s~dg~~l~~-----~--~--~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T 1pby_B 141 AWARDGSKLYG-----L--G--RDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp EECTTSSCEEE-----E--S--SSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred EECCCCCEEEE-----e--C--CeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence 99999999887 3 2 347778887766544332221 0123368999987765443221000
Q ss_pred ----ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 436 ----KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 436 ----~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
......+.+|++.. .....+.+..+...+.+++|+|+|++++++ ++ .|.+||+.++. .+..+.
T Consensus 211 ~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~---~v~~~d~~~~~------~~~~~~ 277 (337)
T 1pby_B 211 PADPTAYRTGLLTMDLET--GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YN---VLESFDLEKNA------SIKRVP 277 (337)
T ss_dssp TTSGGGEEEEEEEEETTT--CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ES---EEEEEETTTTE------EEEEEE
T ss_pred cccccccccceEEEeCCC--CCceEeecCCCCCceeeEEECCCCCEEEEe--CC---eEEEEECCCCc------Ccceec
Confidence 00000234444433 222245555667788899999999999988 45 89999997644 333333
Q ss_pred -CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec
Q 005140 512 -GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 512 -~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~ 553 (712)
+..+.+++|+|+|++|++++. ++.|.+||+.+++.+...
T Consensus 278 ~~~~~~~~~~s~dg~~l~~~~~---~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 278 LPHSYYSVNVSTDGSTVWLGGA---LGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESB---SSEEEEEETTTCCEEEEE
T ss_pred CCCceeeEEECCCCCEEEEEcC---CCcEEEEECcCCcEEEEE
Confidence 346789999999999999876 899999999988877653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-19 Score=186.10 Aligned_cols=295 Identities=9% Similarity=0.037 Sum_probs=187.9
Q ss_pred EEEEECCeeEEEecCCCCCCC-cccccCCCcccceEEEcCCCcEEEEEecC-c-eEEeecc--c-Ccceeeeec-CCCee
Q 005140 185 FVIRSGTDTEVLWNDARHLKP-EPVYKRSYWTESFVQWSPLGTYLATVHRQ-G-AAVWGGA--N-TFNRLMRYA-HPQVK 257 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~v~~v~~Spdg~~lat~~~~-~-i~iw~~~--~-~~~~~~~~~-~~~v~ 257 (712)
|+....++.+.+|+....+.. ......|...+.+++|||+|++|++++.+ + +.+|++. + ....+..+. +..+.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 87 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc
Confidence 334456788889988432221 12223466778999999999999998886 5 8899986 1 223344443 23689
Q ss_pred EEEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEc---cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 258 LIDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDV---RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.++|+|+|++|++++. + +.|.+||+ .+++.+..+..+.... .++|+| ++++
T Consensus 88 ~~~~s~dg~~l~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~ 142 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYNA----------GNVSVTRLEDGLPVGVVDVVEGLDGCH--------------SANISP-DNRT 142 (343)
T ss_dssp EEEECTTSSEEEEEETTT----------TEEEEEEEETTEEEEEEEEECCCTTBC--------------CCEECT-TSSE
T ss_pred EEEEcCCCCEEEEEecCC----------CeEEEEECCCCccccccccccCCCCce--------------EEEECC-CCCE
Confidence 9999999998877665 5 78999999 4444555555443322 589999 9997
Q ss_pred EEEec--CCeEEEEEcCC-ceeccc----ccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC--Cccc--
Q 005140 334 FAKLG--KNMISVYETES-FTLIDK----KSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP--SKEE-- 401 (712)
Q Consensus 334 la~~~--d~~i~iwd~~~-~~~~~~----~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~--~~~~-- 401 (712)
+++++ ++.|.+|++.+ +..... ... ....+..++|+|++++|++. +..++ .|.+|++. +...
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~----~~~~~--~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV----NELNS--SVDVWELKDPHGNIEC 216 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE----ETTTT--EEEEEESSCTTSCCEE
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE----eCCCC--EEEEEEecCCCCcEEE
Confidence 77665 89999999986 543321 112 12357889999999977652 22344 45555553 2222
Q ss_pred eeeeeee------eecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEE-EecCCCCceEEEEEee
Q 005140 402 LRQKNLF------SVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVL-ELDNKNDKIIAFAWEP 473 (712)
Q Consensus 402 ~~~~~~~------~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~h~~~v~~~~~sp 473 (712)
....... ......+.|+|+|++|++... ++. +.+|++...+.....+ .+..+ ..+.+++|+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~---------i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~ 286 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL---------ITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDH 286 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE---------EEEEEECTTSCCEEEEEEEECS-SSCCCEEECT
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCE---------EEEEEEcCCCCceEEeeeecCC-CccceEEECC
Confidence 1111100 112235789999999886653 333 7899987432222222 23233 3488999999
Q ss_pred CCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCC
Q 005140 474 KGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGR 525 (712)
Q Consensus 474 ~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~ 525 (712)
+|++|++++. ++ .|.+|+++...+ ....+..+.. ....+++|.|+-+
T Consensus 287 dg~~l~~~~~~~~---~v~v~~~d~~~g--~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 287 SGKYLIAAGQKSH---HISVYEIVGEQG--LLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp TSSEEEEECTTTC---EEEEEEEETTTT--EEEEEEEEECSSSCCEEEEEEEC-
T ss_pred CCCEEEEecCCCC---eEEEEEEcCCCc--eeeEccccccCCCCeeEEEEcccC
Confidence 9999998885 56 899997764322 1334555543 3467777777543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-20 Score=209.66 Aligned_cols=358 Identities=8% Similarity=0.066 Sum_probs=209.0
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC----Ce--eEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP----QV--KLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~----~v--~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
...+++|+|||++|+++ ++ |.+|+.. ++.....+. |. .+ ..++|||||++|++++.+... -+....+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~-~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ-WRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC-SSSCEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeee-EEEccceE
Confidence 35579999999999997 55 8999998 555444332 21 13 448999999999998875110 00111256
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccc-ccc-----
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS-LKV----- 360 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~-~~~----- 360 (712)
+.+||+.+|+..+ +..+..... .++||| ||+.||++.++.|.+|++.++....... .+.
T Consensus 94 ~~~~d~~~~~~~~-l~~~~~~~~-------------~~~~SP-dG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~ 158 (740)
T 4a5s_A 94 YDIYDLNKRQLIT-EERIPNNTQ-------------WVTWSP-VGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYN 158 (740)
T ss_dssp EEEEETTTTEECC-SSCCCTTEE-------------EEEECS-STTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred EEEEECCCCcEEE-cccCCCcce-------------eeEECC-CCCEEEEEECCeEEEEECCCCceEEEcCCCCccceec
Confidence 7899998887544 444433321 689999 9999999999999999998776432110 111
Q ss_pred ------------cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 361 ------------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 361 ------------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
.....+.|||||+.|++.... +..+.+|.+....... ........+.+.+.|....
T Consensus 159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d----~~~v~~~~~~~~~~~~-----~~~~~~~~~~yp~~G~~~~--- 226 (740)
T 4a5s_A 159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN----DTEVPLIEYSFYSDES-----LQYPKTVRVPYPKAGAVNP--- 226 (740)
T ss_dssp SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE----CTTCCEEEEEECCSTT-----CSSCEEEEEECCBTTSCCC---
T ss_pred CcccccccchhcCCCcceEECCCCCEEEEEEEc----ccCCceEEEEeecCCC-----CCCCcceeecCCCCcCcCC---
Confidence 112358999999999984322 2234444443222110 0011112234444443200
Q ss_pred cccccccccccccEEEEEEec---CCcceeEEEec------CCCCceEEEEEeeCCCEEEEEEcC-CCCCeEEEEEeecc
Q 005140 429 DRYTKTKKSTYTGFELFRIKE---RDIPIEVLELD------NKNDKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTA 498 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~l~------~h~~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~ 498 (712)
...+.+|++.. ... .....+. +|...+..++|||||+.++..... +....|.+||+.++
T Consensus 227 ----------~~~l~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 227 ----------TVKFFVVNTDSLSSVTN-ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp ----------EEEEEEEETTSCCSSSC-CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred ----------eeEEEEEECCCCCCCCc-ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 01245555543 211 1122332 377789999999999977766543 22236899999876
Q ss_pred cc----cCceeEEEEeCCCce-----eEEEEccCCCeEE-EEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCC
Q 005140 499 QH----AGRVSKLTTLKGKQA-----NALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTG 567 (712)
Q Consensus 499 ~~----~~~~~~~~~~~~~~v-----~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg 567 (712)
.. ......+..-....+ ..++|||||+.|+ ..+..+....|++||+.+++.... .....+..+. ++||
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~ 374 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTS 374 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeC
Confidence 51 000112222223333 3789999999887 665433346799999987665443 2234455543 2448
Q ss_pred CEEEEEEcc--ceeccccEEEEEecCceee-eec------ccceeeeEEecCCCCCC
Q 005140 568 RYVATAVTS--VHEMENGFNIWSFNGKLLY-RTL------KDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 568 ~~l~t~s~~--~~~~d~~v~iw~~~g~~~~-~~~------~~~i~~~~w~p~~~~l~ 615 (712)
+.|+..+.. .......++..++.|.... ... ......+.|+|++++++
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 877777661 0001134444455554322 111 24678899999998655
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=185.37 Aligned_cols=281 Identities=7% Similarity=0.048 Sum_probs=181.3
Q ss_pred cCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec-Cc-eEEeecccCcce-eeeec-
Q 005140 177 TDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNR-LMRYA- 252 (712)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~-~~~~~- 252 (712)
+++.+...|+....++.+.+|+. ..++....+..+.... +++|||+|++|++++. ++ +.+||.. +... ...+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ-LEPPKVVAIQE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS-SSSCEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC-CCceeEEeccc
Confidence 44555656777777888889998 4555555555555566 9999999998777766 44 8899998 5554 44443
Q ss_pred CCCeeE-EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQVKL-IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~v~~-i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
+..... ++|+|+|++|+++..+ +..+.|.+||+.+++.+..+..+.... .++|+| +|
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~-------~~~~~i~v~d~~~~~~~~~~~~~~~~~--------------~~~~sp-dg 139 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGL-------NHPFNMQSYSFLKNKFISTIPIPYDAV--------------GIAISP-NG 139 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCS-------SSSCEEEEEETTTTEEEEEEECCTTEE--------------EEEECT-TS
T ss_pred CCCCccceEECCCCCEEEEecCC-------CCcccEEEEECCCCCeEEEEECCCCcc--------------ceEECC-CC
Confidence 344555 9999999999944333 000289999999999888876654443 689999 99
Q ss_pred CEEEEec--CCe-EEEEEcCCceeccc----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 332 KYFAKLG--KNM-ISVYETESFTLIDK----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 332 ~~la~~~--d~~-i~iwd~~~~~~~~~----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
++++++. ++. |.+|++.....+.. ..........++|+|+|+++++. +.. ...|.+|++.+.+.+.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~----~~~--~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA----NLI--GNSIGILETQNPENIT- 212 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE----ETT--TTEEEEEECSSTTSCE-
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE----eCC--CCeEEEEECCCCcccc-
Confidence 8666554 577 99999875332211 11122346778888888766542 112 2234444443222100
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG- 483 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~- 483 (712)
. . ..+. +...+..++|+|+|++++++..
T Consensus 213 --------------------------------------~----------~--~~~~-~~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 213 --------------------------------------L----------L--NAVG-TNNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp --------------------------------------E----------E--EEEE-CSSCCCCEEECTTSSEEEEECSS
T ss_pred --------------------------------------e----------e--eecc-CCCCCceEEECCCCCEEEEEEcC
Confidence 0 0 1111 1355677899999998877665
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCC------Cc---eeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKG------KQ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------~~---v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++ .|.+||+.++.. ..+..+.. .+ .+.++|+|+|++|++++.. ++.|.+||+.+...
T Consensus 242 ~~---~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 242 TV---DVFNFNQLSGTL----SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI--SRELKVFTISGKVV 307 (331)
T ss_dssp EE---EEEEEETTTTEE----EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT--TTEEEEEETTSCEE
T ss_pred CC---EEEEEECCCCce----eeecccccccccCCCCcccccceEECCCCCEEEEecCC--CCcEEEEEecCCcc
Confidence 34 799999876542 12333221 11 2558999999998777641 67999999986544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-18 Score=180.20 Aligned_cols=289 Identities=10% Similarity=0.089 Sum_probs=181.4
Q ss_pred cEEEEEEcc-CCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C-CeEEEEEcC--Cceec--cc
Q 005140 285 VVINIFDVR-TGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K-NMISVYETE--SFTLI--DK 355 (712)
Q Consensus 285 ~~I~iwd~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d-~~i~iwd~~--~~~~~--~~ 355 (712)
+.|++|++. ++. .+..+....... .++|+| +|++|++++ + +.|.+|++. ++... ..
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVDVPGQVQ--------------PMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCC--------------CEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEEEeeeEecCCCCc--------------eEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 899999985 343 333333222221 589999 999888877 4 999999997 44432 22
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec-CCccceeeeeeeeecceeEEECcCCCEEEEEE-ccccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI-PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV-DRYTK 433 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~-~~~~~ 433 (712)
... ...+..++|+|++++|++. +..++.+.+|..+. .....+.... .......+.|+|+|++++++. .++.
T Consensus 80 ~~~-~~~~~~~~~s~dg~~l~~~----~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~- 152 (343)
T 1ri6_A 80 SAL-PGSLTHISTDHQGQFVFVG----SYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDR- 152 (343)
T ss_dssp EEC-SSCCSEEEECTTSSEEEEE----ETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTE-
T ss_pred ccc-CCCCcEEEEcCCCCEEEEE----ecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCE-
Confidence 212 2368899999999988762 22344444444430 1112222211 122345578999999998876 4443
Q ss_pred ccccccccEEEEEEecCCcceeEE--Eec-CCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCc-eeEEE
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVL--ELD-NKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGR-VSKLT 508 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~--~l~-~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~-~~~~~ 508 (712)
+.+|++...+...... .+. .....+.+++|+|+|+++++++ .++ .|.+|++....+... ...+.
T Consensus 153 --------v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~---~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 153 --------ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS---SVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp --------EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT---EEEEEESSCTTSCCEEEEEEE
T ss_pred --------EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCcEEEEeecc
Confidence 7889887533322211 222 2345788999999999888777 455 899999964222111 11222
Q ss_pred EeCCC-----ceeEEEEccCCCeEEEEeccCCCceEEEEECC--c--ceeeeec-cccceeeEEECCCCCEEEEEEccce
Q 005140 509 TLKGK-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--E--LETMATA-EHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 509 ~~~~~-----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~--~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
.+... .+..++|+|+|++|+++.. .++.|.+|++. + .+.+... ....+.+++|+|+|++|++++..
T Consensus 222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-- 297 (343)
T 1ri6_A 222 MMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-- 297 (343)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--
T ss_pred ccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC--
Confidence 22221 3557999999998886552 18999999998 2 3344332 23448899999999999988842
Q ss_pred eccccEEEEEec---Cce--eeeecc-cceeeeEEecCCC
Q 005140 579 EMENGFNIWSFN---GKL--LYRTLK-DHFFQFLWRPRPP 612 (712)
Q Consensus 579 ~~d~~v~iw~~~---g~~--~~~~~~-~~i~~~~w~p~~~ 612 (712)
++.+.+|+++ |.+ +..... .....++|.|+.+
T Consensus 298 --~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 298 --SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp --TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred --CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 7999999775 322 222222 4677888888754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=182.03 Aligned_cols=253 Identities=14% Similarity=0.122 Sum_probs=176.6
Q ss_pred cCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccc
Q 005140 233 RQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFA 309 (712)
Q Consensus 233 ~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~ 309 (712)
.++ |.+|+.. +.+......|. .|.+++|||+|++|++++ + +.|++||+.+ ++....+..+....
T Consensus 20 ~~~~i~~~d~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~----------~~i~~~d~~~~~~~~~~~~~~~~~~- 86 (297)
T 2ojh_A 20 MRSSIEIFNIR-TRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E----------GLLYRLSLAGDPSPEKVDTGFATIC- 86 (297)
T ss_dssp CCEEEEEEETT-TTEEEEEEEESSCCEEEEECTTSSEEEEEE-T----------TEEEEEESSSCCSCEECCCTTCCCB-
T ss_pred cceeEEEEeCC-CCceeeeccCCcceEeeEECCCCCEEEEEc-C----------CeEEEEeCCCCCCceEecccccccc-
Confidence 445 8899998 66655555555 499999999999999987 5 6899999988 87776665553211
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEE--EcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVY--ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
..+++|+| ++++|+++. ++...|| ++.++... .. .....+..++|+|+++.|++. ++
T Consensus 87 -----------~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~spdg~~l~~~----~~ 148 (297)
T 2ojh_A 87 -----------NNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTPR-LM-TKNLPSYWHGWSPDGKSFTYC----GI 148 (297)
T ss_dssp -----------CSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCCE-EC-CSSSSEEEEEECTTSSEEEEE----EE
T ss_pred -----------ccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCceE-Ee-ecCCCccceEECCCCCEEEEE----EC
Confidence 11589999 999999887 2345555 44444321 11 223348889999999988853 33
Q ss_pred CCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 385 GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 385 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
.++..+||.++........ ..........+.|+|+|++|++... ++. ..+|.+...+... ..+..|.
T Consensus 149 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~ 216 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVETR-LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ---------MQIWRVRVDGSSV--ERITDSA 216 (297)
T ss_dssp ETTEEEEEEEETTTCCEEE-CCCSSSCEEEEEECTTSSEEEEEECTTSS---------CEEEEEETTSSCE--EECCCCS
T ss_pred CCCceEEEEEECCCCcceE-cccCCCccccceECCCCCEEEEEecCCCC---------ccEEEECCCCCCc--EEEecCC
Confidence 5566788888876544322 2222334456789999999988764 433 6899987544333 4455677
Q ss_pred CceEEEEEeeCCCEEEEEEcCCC--------CCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSP--------RPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~--------~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
..+.+++|+|+|++|++++.++. ...|.+|++.++.. ..+..+. ...+.+++|+|+|++|++++.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----EEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----eeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 88999999999999999887531 12699999876542 2444432 346889999999999998876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-20 Score=192.64 Aligned_cols=325 Identities=11% Similarity=0.045 Sum_probs=201.6
Q ss_pred EecCCCCCCCcccccCCCcc-----cceEEEcCCCcEEEEEecC----ceEEeecccCcceeeeec-CCC-eeEEEecCC
Q 005140 196 LWNDARHLKPEPVYKRSYWT-----ESFVQWSPLGTYLATVHRQ----GAAVWGGANTFNRLMRYA-HPQ-VKLIDFSPG 264 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~-----v~~v~~Spdg~~lat~~~~----~i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spd 264 (712)
.|-.+..+.....++.+... +.+++|||||++||+.... .+.+|+.. ++....... ... ...+.||||
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE-TQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECC-CCcEEEeecCCCCccccceECCC
Confidence 34333444444455544333 7889999999999988654 26688887 554333222 223 334889999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~ 343 (712)
|++|++++.+ +.|++||+.+++....+..+. .|++ +|+.|+... +....
T Consensus 92 g~~l~~~~~~----------~~l~~~d~~~~~~~~~~~~~~-------------------~~~~-~g~~l~~~~~~~~~~ 141 (396)
T 3c5m_A 92 ERAFFYVKNE----------LNLMKVDLETLEEQVIYTVDE-------------------EWKG-YGTWVANSDCTKLVG 141 (396)
T ss_dssp SSEEEEEETT----------TEEEEEETTTCCEEEEEECCT-------------------TEEE-EEEEEECTTSSEEEE
T ss_pred CCEEEEEEcC----------CcEEEEECCCCCcEEEEeccc-------------------ccCC-CCCEEEeccCCcccc
Confidence 9999999988 789999998887655443321 2677 888888776 44444
Q ss_pred EEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc-CCC
Q 005140 344 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS-SGD 422 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~ 422 (712)
+|. ..+.|+|+++.+++.... .......|+++++.+.+..... ........+.|+| +|.
T Consensus 142 ~~~-----------------~~~~~spdg~~~~~~~~~--~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~ 201 (396)
T 3c5m_A 142 IEI-----------------LKRDWQPLTSWEKFAEFY--HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDS 201 (396)
T ss_dssp EEE-----------------EGGGCCCCCSHHHHHHHH--HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEE
T ss_pred ccc-----------------cccccCCCCcceeeeeec--cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCC
Confidence 442 134688999888751100 0245678889988765532222 1223344568999 888
Q ss_pred EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC--CCceEEEEEeeCCCEEEEEEcCCCCCe--EEEEEeecc
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--NDKIIAFAWEPKGHRFAVIHGDSPRPD--ISFYSMRTA 498 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--~~~v~~~~~sp~g~~l~~~~~d~~~~~--v~i~d~~~~ 498 (712)
.|++.+..... .. ...||.++..+... ..+..+ ...+..++|+|+|++|++++.+..... |++||+.++
T Consensus 202 ~l~~~~~~~~~---~~--~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 202 TVGFCHEGPHD---LV--DARMWLVNEDGSNV--RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EEEEEECSCSS---SC--SCCCEEEETTSCCC--EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EEEEEecCCCC---CC--CceEEEEECCCCce--eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 88887642210 00 12344444332221 223222 235778999999999888876432224 999998765
Q ss_pred cccCceeEEEEeCCCceeEEEEcc-CCCeEEEEecc-------------CCCceEEEEECCcceeeee-cccc-------
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLK-------------GFNGQLEFYNVDELETMAT-AEHF------- 556 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~~~-------------~~dg~v~iwd~~~~~~~~~-~~~~------- 556 (712)
.. ..+..+.. .. +.|+| ||+++++++.. ..++.|++||+.+++.... .+..
T Consensus 275 ~~----~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 347 (396)
T 3c5m_A 275 EN----EEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDG 347 (396)
T ss_dssp CE----EEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTT
T ss_pred Ce----EEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccc
Confidence 42 23443332 23 89999 99988875421 0147899999987665332 2222
Q ss_pred ----ceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 557 ----MATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 557 ----~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+..++|+|||++|++++.. ++...||.+
T Consensus 348 ~~~~~~~~~~~s~dg~~l~~~s~~----~~~~~l~~~ 380 (396)
T 3c5m_A 348 DRQITHPHPSFTPNDDGVLFTSDF----EGVPAIYIA 380 (396)
T ss_dssp BSSTTCCCCEECTTSSEEEEEECT----TSSCEEEEE
T ss_pred cccCCCCCceEccCCCeEEEEecC----CCCceEEEE
Confidence 25678999999999988863 455555544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-18 Score=177.24 Aligned_cols=274 Identities=10% Similarity=0.031 Sum_probs=190.1
Q ss_pred cccceEEEcCCCcEEEEEecC-------c-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEc-CCCCCCCcCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ-------G-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYS-SHEPSNPRDAN 283 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~-------~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s-~d~~~~~~~~~ 283 (712)
..+..++|||+|++|++++.+ + |.+||.. +++.+..+... .+..++|+|+|++|++++ .+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~--------- 110 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV-TLEVTQAIHNDLKPFGATINNTTQTLWFGNTVN--------- 110 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT-TCCEEEEEEESSCCCSEEEETTTTEEEEEETTT---------
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC-CCeEEEEEecCCCcceEEECCCCCEEEEEecCC---------
Confidence 345679999999999888743 3 8899998 77777777544 488999999999766554 45
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+.|.+||+.+++.+..+..+..... ....... -..+.|+| ++++++.+. ++.|.+||+.+++.+.....+.
T Consensus 111 -~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 111 -SAVTAIDAKTGEVKGRLVLDDRKRT--EEVRPLQ--PRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp -TEEEEEETTTCCEEEEEESCCCCCC--SSCCCCE--EEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred -CEEEEEeCCCCeeEEEEecCCCccc--cccCCCC--CceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence 7899999999998888766432110 0000000 01589999 999776654 7889999999888775544344
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee----eeecceeEEECcCCCEEEEEEcccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL----FSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..+.+++|+|+++.|++ ++. ...|+.|+..+.+.+..... .......+.|+|+|+++++......
T Consensus 185 ~~~~~~~~s~dg~~l~~-----~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---- 253 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYT-----TNA--DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA---- 253 (353)
T ss_dssp TTCCCCEEETTTTEEEE-----ECT--TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS----
T ss_pred CccceEEECCCCCEEEE-----EcC--CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC----
Confidence 45889999999999887 333 45677888887765554433 1222345789999998887765422
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC-CCc
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQ 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~ 514 (712)
.+.+|++... .....+.. .. ...++|+|+|++++++.. ++ .|.+||+.++. .+..+. ...
T Consensus 254 ----~v~~~d~~~~-~~~~~~~~---~~-~~~~~~s~dg~~l~v~~~~~~---~v~~~d~~~~~------~~~~~~~~~~ 315 (353)
T 3vgz_A 254 ----EVLVVDTRNG-NILAKVAA---PE-SLAVLFNPARNEAYVTHRQAG---KVSVIDAKSYK------VVKTFDTPTH 315 (353)
T ss_dssp ----EEEEEETTTC-CEEEEEEC---SS-CCCEEEETTTTEEEEEETTTT---EEEEEETTTTE------EEEEEECCSE
T ss_pred ----EEEEEECCCC-cEEEEEEc---CC-CceEEECCCCCEEEEEECCCC---eEEEEECCCCe------EEEEEecCCC
Confidence 2556665332 22233333 12 256999999998877774 55 89999987654 344443 346
Q ss_pred eeEEEEccCCCeEEEEec
Q 005140 515 ANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~ 532 (712)
..+++|+|+|++|+++..
T Consensus 316 ~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 316 PNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred CCeEEEcCCCCEEEEEEc
Confidence 789999999998888765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-18 Score=177.37 Aligned_cols=283 Identities=11% Similarity=0.022 Sum_probs=182.6
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC---CeeEEEecCCCCEEEEE-cCCCCCCCcCCCccEEEEEE
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP---QVKLIDFSPGEKYLVTY-SSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~---~v~~i~~Spdg~~l~t~-s~d~~~~~~~~~~~~I~iwd 291 (712)
+.+++++++.++++++.++ |.+||.. +++.+..+..+ .+..++|+|+|++++.+ ..+ +.|.+||
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----------~~i~~~d 71 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY----------GDIYGID 71 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT----------TEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC----------CcEEEEe
Confidence 4578899999999999888 8899998 77777666533 48899999999976544 455 7899999
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C------------CeEEEEEcCCceeccccc-
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K------------NMISVYETESFTLIDKKS- 357 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d------------~~i~iwd~~~~~~~~~~~- 357 (712)
+.+++.+..+..+.... ..+.....++|+| +|++|++++ + +.|.+||+.+++......
T Consensus 72 ~~t~~~~~~~~~~~~~~-------~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 72 LDTCKNTFHANLSSVPG-------EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp TTTTEEEEEEESCCSTT-------EEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred CCCCcEEEEEEcccccc-------cccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 99998877765432100 0000001589999 999998887 4 899999998765432211
Q ss_pred -ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee------------------------cc
Q 005140 358 -LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV------------------------SD 412 (712)
Q Consensus 358 -~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------------~~ 412 (712)
.+...+.+++|+|+|+ +++ ++.+ |++|+..+.+.+........ ..
T Consensus 144 ~~~~~~~~~~~~s~dg~-l~~-----~~~~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 144 FPMPRQVYLMRAADDGS-LYV-----AGPD----IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp EECCSSCCCEEECTTSC-EEE-----ESSS----EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ccCCCcccceeECCCCc-EEE-----ccCc----EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 1223588899999999 544 2222 77888877654433221110 00
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~ 491 (712)
..+.+++++...... ......++.+......+..+.+..+...+.+++|+| +|++++++ ++ .|.
T Consensus 214 ~~~~~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~---~v~ 278 (349)
T 1jmx_B 214 YTIARFKDDKQDPAT----------ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN---RLA 278 (349)
T ss_dssp EEEEEC-------CC----------CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES---EEE
T ss_pred eeeeecCCCcCCccc----------cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC---eEE
Confidence 111222221100000 000011222232223333344444567788999999 99999888 45 899
Q ss_pred EEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 492 FYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+||+.++. .+..+. ++.+.+++|+|+|++|++++. ++.|.+||+.+++.+..
T Consensus 279 ~~d~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 279 KYDLKQRK------LIKAANLDHTYYCVAFDKKGDKLYLGGT---FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEETTTTE------EEEEEECSSCCCEEEECSSSSCEEEESB---SSEEEEEETTTTEEEEE
T ss_pred EEECccCe------EEEEEcCCCCccceEECCCCCEEEEecC---CCeEEEEeccccceeee
Confidence 99997654 333333 445789999999999998766 89999999998887765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-18 Score=192.80 Aligned_cols=364 Identities=11% Similarity=0.112 Sum_probs=216.4
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcc---c--ceEEEcCCCcEEEEEecC---------c-eEEeecccCccee
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWT---E--SFVQWSPLGTYLATVHRQ---------G-AAVWGGANTFNRL 248 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---v--~~v~~Spdg~~lat~~~~---------~-i~iw~~~~~~~~~ 248 (712)
++++.. ++.+.+|+. ..++....+++|... + ..++|||||++||+++.+ + +.+||+. +++..
T Consensus 29 ~~~~~~-~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~ 105 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLI 105 (740)
T ss_dssp EEEEEE-TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEEC
T ss_pred cEEEEc-CCcEEEEEC-CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEE
Confidence 566655 888999998 455555556666533 2 237899999999999874 3 5699999 66544
Q ss_pred eeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCc-----CCCCc
Q 005140 249 MRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGV-----AGVSW 321 (712)
Q Consensus 249 ~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~-----~~~~~ 321 (712)
....+. .+..++|||||++||++. + +.|++|++.+|...+... ++...+..+....+ .+. .
T Consensus 106 ~l~~~~~~~~~~~~SPdG~~la~~~-~----------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~-~ 173 (740)
T 4a5s_A 106 TEERIPNNTQWVTWSPVGHKLAYVW-N----------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA-Y 173 (740)
T ss_dssp CSSCCCTTEEEEEECSSTTCEEEEE-T----------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS-S
T ss_pred EcccCCCcceeeEECCCCCEEEEEE-C----------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC-C
Confidence 333333 499999999999999985 4 589999998887554322 22111100000000 000 0
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS- 398 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~- 398 (712)
..+.||| ||++||+.. +..+.+|++....... .+.+.+..+.+.+.|. .+..+.|++|++.+
T Consensus 174 ~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~-----------~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 174 SALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA-----------VNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS-----------CCCEEEEEEEETTSC
T ss_pred cceEECC-CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC-----------cCCeeEEEEEECCCC
Confidence 1489999 999999987 5558888765221110 1233455666665542 44556788898877
Q ss_pred --ccc--eeeeee------eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC----c-ceeEEEecCCC
Q 005140 399 --KEE--LRQKNL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----I-PIEVLELDNKN 463 (712)
Q Consensus 399 --~~~--~~~~~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~-~~~~~~l~~h~ 463 (712)
... ...... .......+.|+|||+.+++...+... ...+.+|++.... . ....+.-.+|.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~-----~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-----YSVMDICDYDESSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-----EEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC-----EEEEEEEECCCCccccceeEEEEeeeccCC
Confidence 521 111111 22334567899999977776554321 1236677776543 0 11112113455
Q ss_pred CceE-----EEEEeeCCCEEE-EEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEecc--C-
Q 005140 464 DKII-----AFAWEPKGHRFA-VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK--G- 534 (712)
Q Consensus 464 ~~v~-----~~~~sp~g~~l~-~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~--~- 534 (712)
..+. +++|+|||+.|+ ..+...+...|++|++.++.. ..+.. ....+..+. ++||+.|+..+.. .
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----~~lT~-g~~~v~~~~-~~d~~~i~f~~~~~~~~ 387 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC----TFITK-GTWEVIGIE-ALTSDYLYYISNEYKGM 387 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----EESCC-SSSCEEEEE-EECSSEEEEEESCGGGC
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----Eeccc-CCEEEEEEE-EEeCCEEEEEEecCCCC
Confidence 5554 789999999988 776554445888898865432 12211 122344433 3568777776653 1
Q ss_pred -CCceEEEEECCcceee--eec----cccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 535 -FNGQLEFYNVDELETM--ATA----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 535 -~dg~v~iwd~~~~~~~--~~~----~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
....|+..++.++... .+. .......+.|||+|++++....... ...+.+++..
T Consensus 388 ~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~--~p~~~l~~~~ 448 (740)
T 4a5s_A 388 PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG--LPLYTLHSSV 448 (740)
T ss_dssp TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS--SCEEEEEETT
T ss_pred CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC--CCEEEEEECC
Confidence 2345666677655432 121 2356788999999998877665310 2345555554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-19 Score=199.47 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=171.2
Q ss_pred CcccceEEEcCCCcEEEEEec-Cc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
...|.+++|||||++||+++. ++ +.||++. ++.......+. .+.+++|||| +.+++++.+.. .....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g-------~~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG-------AEQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT-------SCCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEc-CCCcEeeecccccccccccCCCC-eEEEEeccCCC-------CcceE
Confidence 457899999999999999886 77 7799987 55444333333 5999999999 77777664100 02344
Q ss_pred EEEcc---CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--EEEEecCCeEEEEEcCCceecccccccccCe
Q 005140 289 IFDVR---TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK--YFAKLGKNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 289 iwd~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~--~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
||.+. .|... .+....... ..+|+| ||+ ++++..++.+.+|++.+++..... ....
T Consensus 92 l~~~~~~~~g~~~-~l~~~~~~~--------------~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~--~~~~- 152 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-RLEAVKPMR--------------ILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELA--RLPG- 152 (582)
T ss_dssp EEEEETTSTTCCE-ECTTSCSBE--------------EEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEE--EESS-
T ss_pred EEEEeccCCCccc-cccCCCCce--------------eeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEee--cCCC-
Confidence 54432 23322 333222221 468888 886 444445666669999877543211 1111
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|||||+.|++..... .+...|+++++.+
T Consensus 153 ~~~~~spDG~~la~~~~~~---~~~~~i~~~d~~~--------------------------------------------- 184 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFG---GGRVSLFTSNLSS--------------------------------------------- 184 (582)
T ss_dssp CEEEEEEETTEEEEEEEEE---TTEEEEEEEETTT---------------------------------------------
T ss_pred ceEEECCCCCEEEEEEEcC---CCCeEEEEEcCCC---------------------------------------------
Confidence 5666677776666521110 0112233333211
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEE--
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALF-- 519 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~-- 519 (712)
... ..+..|.+.+.+++|||||++|+++..++ ...|++||+.++. .. .+..+ .+..++
T Consensus 185 --------g~~--~~l~~~~~~~~~~~~SpDG~~l~~~~~~~-~~~i~~~d~~~~~------~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 185 --------GGL--RVFDSGEGSFSSASISPGMKVTAGLETAR-EARLVTVDPRDGS------VE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp --------CCC--EEECCSSCEEEEEEECTTSCEEEEEECSS-CEEEEEECTTTCC------EE-ECCCSCSHHHHHCCS
T ss_pred --------CCc--eEeecCCCccccceECCCCCEEEEccCCC-eeEEEEEcCCCCc------EE-EccCCCcChhhhhhc
Confidence 111 23456678889999999999999655544 2378899987654 22 33332 455566
Q ss_pred ------EccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 520 ------WSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 520 ------~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
|||||..+++++. +|.+++|++ ++.+. .....+.+++|+ +|+++++++... ....+++|+..+
T Consensus 247 ~~~~~~~spdg~~~~~~~~---~g~~~l~~~--g~~~~-~~~~~v~~~~~s-dg~~l~~~s~~~--~p~~l~~~d~~~ 315 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARR---EGRSAVFID--GERVE-APQGNHGRVVLW-RGKLVTSHTSLS--TPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEECTTSCEEEEEEE---TTEEEEEET--TEEEC-CCSSEEEEEEEE-TTEEEEEEEETT--EEEEEEEETTCC
T ss_pred cccceeEcCCCcEEEEEEc---CCcEEEEEE--CCeec-cCCCceEEEEec-CCEEEEEEcCCC--CCCeEEEEcCCC
Confidence 9999988888887 999999999 66554 334678899999 999998887720 013455555443
|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=153.84 Aligned_cols=95 Identities=25% Similarity=0.484 Sum_probs=88.9
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.+++++|||+|||.++++|++.+++.|+++|++||.|.+ +.||.|+.||++||||||+|.++++|.+|++.|||..++
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 467889999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEeeccccccc
Q 005140 136 RAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 136 ~~~~l~v~~~~~~~~~~ 152 (712)
+++.+.|....+.+++.
T Consensus 81 g~r~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 81 LKHRLFLYTMKDVERYN 97 (100)
T ss_dssp SSCBCEEEESHHHHHHH
T ss_pred CCeEEEEEECchhhhhh
Confidence 85599999887777664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-17 Score=169.65 Aligned_cols=266 Identities=14% Similarity=0.146 Sum_probs=158.2
Q ss_pred ceEEeeccc-Ccce--eeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCccc
Q 005140 235 GAAVWGGAN-TFNR--LMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEF 308 (712)
Q Consensus 235 ~i~iw~~~~-~~~~--~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~ 308 (712)
++.+|.++. ++.. +... +...+..++|||||+ |++++.. +..+.|.+|++.++. .+..+..+....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 366776552 2332 2222 234588999999999 5555431 011789999997765 333333232222
Q ss_pred ccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcC-Cce--eccccccc---------ccCeeeEEECCCCCe
Q 005140 309 AVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETE-SFT--LIDKKSLK---------VENVMDFSWSPTDPI 374 (712)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~-~~~--~~~~~~~~---------~~~v~~~~~sp~~~~ 374 (712)
. .++|+| ||++|++++ ++.|.+|++. ++. .+...... ...+.+++|+|+|+.
T Consensus 89 ~-------------~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 89 A-------------YVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp S-------------EEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred E-------------EEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 1 589999 999887776 7999999986 222 22111110 112566777777773
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
+++ ...++ .|++|++.. +|.... .
T Consensus 155 ~v~-----~~~~~--~v~~~~~~~---------------------~g~~~~----------------------------~ 178 (347)
T 3hfq_A 155 AVI-----DLGSD--KVYVYNVSD---------------------AGQLSE----------------------------Q 178 (347)
T ss_dssp EEE-----ETTTT--EEEEEEECT---------------------TSCEEE----------------------------E
T ss_pred EEE-----eCCCC--EEEEEEECC---------------------CCcEEE----------------------------e
Confidence 332 22222 333333211 111100 0
Q ss_pred eEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC---C-----CceeEEEEccCCC
Q 005140 455 EVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---G-----KQANALFWSPSGR 525 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~-----~~v~~l~~spdg~ 525 (712)
..... .....+..++|+|+|++++++.. ++ .|.+|++....+ .+..+..+. . ..+..++|+|||+
T Consensus 179 ~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~---~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 179 SVLTM-EAGFGPRHLVFSPDGQYAFLAGELSS---QIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp EEEEC-CTTCCEEEEEECTTSSEEEEEETTTT---EEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred eeEEc-CCCCCCceEEECCCCCEEEEEeCCCC---EEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 00111 11235677999999998887765 44 899999975222 122333322 1 2467899999999
Q ss_pred eEEEEeccCCCceEEEEECCc-c--eeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 526 FIVLAGLKGFNGQLEFYNVDE-L--ETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~-~--~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|++++.+ ++.|.+|++.. + +.+.. .+...+..++|+|||++|++++.. ++.+.+|+++
T Consensus 253 ~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~d 316 (347)
T 3hfq_A 253 FLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN----TDNATLYARD 316 (347)
T ss_dssp EEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT----TTEEEEEEEC
T ss_pred EEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----CCcEEEEEEe
Confidence 88665431 78999999872 2 33333 223467899999999999998873 5899999765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-18 Score=175.63 Aligned_cols=263 Identities=13% Similarity=0.096 Sum_probs=180.8
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCC-c-ccceEEEcCCCcEEEEEec-Cc-eEEeecccCcceeeeecCC-----
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSY-W-TESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNRLMRYAHP----- 254 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~~~~~~~~----- 254 (712)
.+++...++.+.+|+. ..++....+.... . .+.+++|||+|++|+.++. ++ |.+||.. +++.+..+...
T Consensus 3 ~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 3 YILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCBTTEE
T ss_pred EEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCCcccc
Confidence 4566777888889998 3444444444222 1 4788999999987765554 45 8899998 67766555421
Q ss_pred --CeeEEEecCCCCEEEEEc------------CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCC
Q 005140 255 --QVKLIDFSPGEKYLVTYS------------SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVS 320 (712)
Q Consensus 255 --~v~~i~~Spdg~~l~t~s------------~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (712)
.+.+++|+|+|++|++++ .+ +.|.+||+.+++.++.+.......
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~----------~~i~v~d~~~~~~~~~~~~~~~~~------------ 138 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP----------TRVALYDAETLSRRKAFEAPRQIT------------ 138 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECC----------CEEEEEETTTTEEEEEEECCSSCC------------
T ss_pred cccccceEECCCCCEEEEEecccccccccccccC----------ceEEEEECCCCcEEEEEeCCCCcc------------
Confidence 578899999999998886 34 789999999988887776543322
Q ss_pred cCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCe-----------
Q 005140 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA----------- 389 (712)
Q Consensus 321 ~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~----------- 389 (712)
.++|+| +|++|+++ ++.|.+||+.+++.+....... ....+.|+|++..|++ .+.....
T Consensus 139 --~~~~s~-dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~-----~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 139 --MLAWAR-DGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWN-----QHESSGVMATPFYTARKD 208 (337)
T ss_dssp --CEEECT-TSSCEEEE-SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCC-----CCTTTTEEEEEEEEEBTT
T ss_pred --eeEECC-CCCEEEEe-CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEee-----eccCCCceeeeeeccccc
Confidence 589999 99988877 7899999999887664332222 1124488999987765 2222221
Q ss_pred -----------EEEEEecCCccceeeeeee--eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 390 -----------RVSLVQIPSKEELRQKNLF--SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 390 -----------~i~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
.|++++..+.+.. ..... ......+.|+|+|++++++ ++. +.+|++... .....
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~---------v~~~d~~~~-~~~~~ 275 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNV---------LESFDLEKN-ASIKR 275 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESE---------EEEEETTTT-EEEEE
T ss_pred cccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCe---------EEEEECCCC-cCcce
Confidence 5788888776543 22221 1233457899999999887 222 567765432 22222
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+.. ...+.+++|+|+|++|++++.++ .|.+||+.++.
T Consensus 276 ~~~---~~~~~~~~~s~dg~~l~~~~~~~---~i~v~d~~~~~ 312 (337)
T 1pby_B 276 VPL---PHSYYSVNVSTDGSTVWLGGALG---DLAAYDAETLE 312 (337)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEESBSS---EEEEEETTTCC
T ss_pred ecC---CCceeeEEECCCCCEEEEEcCCC---cEEEEECcCCc
Confidence 333 45678999999999999887666 99999997654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=193.48 Aligned_cols=259 Identities=9% Similarity=0.008 Sum_probs=168.5
Q ss_pred CeeEEEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
.|.+++|||||++||+++. + ++++||++.+++. +.+..+. ..+. .+.||| | +
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~----------g~~~lw~~~~g~~-~~lt~~~~~~~~-------------~~~~sp-d-~ 76 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSE----------GSVNAYLYDGGET-VKLNREPINSVL-------------DPHYGV-G-R 76 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEET----------TEEEEEEEETTEE-EECCSSCCSEEC-------------EECTTC-S-E
T ss_pred chheeecCCCCCeEEEEEccC----------CceeEEEEcCCCc-Eeeecccccccc-------------cccCCC-C-e
Confidence 4999999999999999887 7 8999999866654 4444443 2331 689999 8 6
Q ss_pred EEEEec----CCeEEEEEcCC---ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 333 YFAKLG----KNMISVYETES---FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 333 ~la~~~----d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
+++++. +....+|.++. +... ......++..++|+|+|+.+++... .....
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~----~~~~~---------------- 134 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVKPMRILSGVDTGEAVVFTGA----TEDRV---------------- 134 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSCSBEEEEEEECSSCEEEEEE----CSSCE----------------
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc--cccCCCCceeeeeCCCCCeEEEEec----CCCCc----------------
Confidence 666544 34556665442 2111 1122234455677777765544211 11111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.+|++.... . ..+..+.. .+++|||||++|++++.+.
T Consensus 135 -------------------------------------~l~d~~~g~--~--~~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 135 -------------------------------------ALYALDGGG--L--RELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp -------------------------------------EEEEEETTE--E--EEEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred -------------------------------------eEEEccCCc--E--EEeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 233332110 0 11111122 7889999999999887762
Q ss_pred CC-CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCc--eEEEEECCcceeee-eccccceeeE
Q 005140 486 PR-PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG--QLEFYNVDELETMA-TAEHFMATDV 561 (712)
Q Consensus 486 ~~-~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg--~v~iwd~~~~~~~~-~~~~~~v~~~ 561 (712)
.. ..|++||+.++.. ..+ .-....+..++|||||++|+++.. ++ .|++||+.+++... ..+...+..+
T Consensus 172 ~~~~~i~~~d~~~g~~----~~l-~~~~~~~~~~~~SpDG~~l~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGL----RVF-DSGEGSFSSASISPGMKVTAGLET---AREARLVTVDPRDGSVEDLELPSKDFSSY 243 (582)
T ss_dssp TTEEEEEEEETTTCCC----EEE-CCSSCEEEEEEECTTSCEEEEEEC---SSCEEEEEECTTTCCEEECCCSCSHHHHH
T ss_pred CCCeEEEEEcCCCCCc----eEe-ecCCCccccceECCCCCEEEEccC---CCeeEEEEEcCCCCcEEEccCCCcChhhh
Confidence 11 2789999876542 122 112335789999999999996655 66 89999999876652 2344556666
Q ss_pred E--------ECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhH
Q 005140 562 E--------WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 562 ~--------~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d 620 (712)
+ |||||+.+++++. ++.++||++ |+.+. ...+.+..++|+ +++.+++.+.+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~-----~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARR-----EGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEE-----TTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEc-----CCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEEEcCC
Confidence 6 9999988888888 899999999 76554 444778899999 88888776654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-18 Score=179.47 Aligned_cols=314 Identities=11% Similarity=0.036 Sum_probs=180.2
Q ss_pred eecccCcceeeeec-CC-CeeE-----EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccC
Q 005140 239 WGGANTFNRLMRYA-HP-QVKL-----IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG 311 (712)
Q Consensus 239 w~~~~~~~~~~~~~-~~-~v~~-----i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~ 311 (712)
++.. ++..+.++. +. .... ++|||||++|++++... +...|.+||+.+++..+...++....
T Consensus 15 ~~~~-~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~lt~~~~~~~--- 83 (388)
T 3pe7_A 15 QDAS-TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD-------GPWNYYLLDLNTQVATQLTEGRGDNT--- 83 (388)
T ss_dssp ECTT-TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-------SSCEEEEEETTTCEEEECCCSSCBCS---
T ss_pred ecCC-CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC-------CCceEEEEeCCCCceEEeeeCCCCCc---
Confidence 3444 555555553 23 2444 88999999999998731 11369999998888776665554432
Q ss_pred CCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeee--EEECCCCCeEEEEeecCCCCCCC
Q 005140 312 GTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMD--FSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 312 ~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~--~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
+ .+.||| ||++|+++. ++.|.+|++.+++.......+...+.. ..++|++..++...... .
T Consensus 84 ---------~-~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--~--- 147 (388)
T 3pe7_A 84 ---------F-GGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR--E--- 147 (388)
T ss_dssp ---------S-SCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEG--G---
T ss_pred ---------c-ceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccC--c---
Confidence 1 368999 999999988 789999999987654332223222322 34589998887521110 0
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEE
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 468 (712)
. |.+...+..+. ..........||.++...... ..+..+...+..
T Consensus 148 ---------~------------------~~~~~~~~~~~------~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~ 192 (388)
T 3pe7_A 148 ---------D------------------WVPLTDWKKFH------EFYFTKPCCRLMRVDLKTGES--TVILQENQWLGH 192 (388)
T ss_dssp ---------G------------------CCCCCSHHHHH------HHGGGCCCEEEEEEETTTCCE--EEEEEESSCEEE
T ss_pred ---------c------------------cccccccchhh------hhhccCCcceEEEEECCCCce--EEeecCCccccc
Confidence 0 01100000000 000000001233333222222 222234667889
Q ss_pred EEEee-CCCEEEEEEcCC---CCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccC--CCceEEE
Q 005140 469 FAWEP-KGHRFAVIHGDS---PRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKG--FNGQLEF 541 (712)
Q Consensus 469 ~~~sp-~g~~l~~~~~d~---~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~--~dg~v~i 541 (712)
++|+| +|++|+++.... ....|.++++.++.. ..+..... ..+..++|||||+.|++.+... .++.|++
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 99999 999999888632 123677777654321 12221111 2467889999999887765422 1234999
Q ss_pred EECCcceeeee--ccc-----cceeeEEECCCCCEEEEEEcc----ceeccccEEEEEecCceeeee--ccc--------
Q 005140 542 YNVDELETMAT--AEH-----FMATDVEWDPTGRYVATAVTS----VHEMENGFNIWSFNGKLLYRT--LKD-------- 600 (712)
Q Consensus 542 wd~~~~~~~~~--~~~-----~~v~~~~~spdg~~l~t~s~~----~~~~d~~v~iw~~~g~~~~~~--~~~-------- 600 (712)
||+.+++.... ... .....+.|||||++|++.... ....+..|++|++.+..+... +..
T Consensus 269 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 269 ADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGD 348 (388)
T ss_dssp ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTB
T ss_pred EecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccc
Confidence 99998764322 111 012335899999998875420 001156899999986654433 223
Q ss_pred ---ceeeeEEecCCCCCCChh
Q 005140 601 ---HFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 601 ---~i~~~~w~p~~~~l~s~~ 618 (712)
.+..++|+|+|+.|+..+
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEE
T ss_pred cccCCCCccCCCCCCEEEEEe
Confidence 478899999999887554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-16 Score=163.93 Aligned_cols=274 Identities=10% Similarity=0.093 Sum_probs=166.2
Q ss_pred eeEEEecCCCC-CCCcc-cccCCCcccceEEEcCCCcEEEEEec---Cc-eEEeecccCcc--eeeee--cCCCeeEEEe
Q 005140 192 DTEVLWNDARH-LKPEP-VYKRSYWTESFVQWSPLGTYLATVHR---QG-AAVWGGANTFN--RLMRY--AHPQVKLIDF 261 (712)
Q Consensus 192 ~~~~~w~~~~~-~~~~~-~~~~~~~~v~~v~~Spdg~~lat~~~---~~-i~iw~~~~~~~--~~~~~--~~~~v~~i~~ 261 (712)
+.+.+|..+.. +.... ....+......++|||||+ |++++. ++ |.+|++. ++. .+..+ +...+..++|
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~-~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQID-GQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEE-TTEEEEEEEEEEESCCCSEEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEec-CCcEEEeeeeecCCCCCEEEEE
Confidence 34456655332 22211 2234456678899999999 555543 34 8899997 443 33332 2345899999
Q ss_pred cCCCCEEEEEc-CCCCCCCcCCCccEEEEEEcc-CCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 262 SPGEKYLVTYS-SHEPSNPRDANRVVINIFDVR-TGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 262 Spdg~~l~t~s-~d~~~~~~~~~~~~I~iwd~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
||||++|++++ .+ +.|.+|++. +|. .+..+....... .....+.....++|+| +|+++++.
T Consensus 94 spdg~~l~~~~~~~----------~~v~v~~~~~~g~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~sp-dg~l~v~~ 158 (347)
T 3hfq_A 94 DEARQLVYSANYHK----------GTAEVMKIAADGALTLTDTVQHSGHGP----RPEQDGSHIHYTDLTP-DNRLAVID 158 (347)
T ss_dssp ETTTTEEEEEETTT----------TEEEEEEECTTSCEEEEEEEECCCCCS----STTCSSCCEEEEEECT-TSCEEEEE
T ss_pred CCCCCEEEEEeCCC----------CEEEEEEeCCCCCeeecceeecCCCCC----CccccCCCceEEEECC-CCcEEEEe
Confidence 99999998887 45 789999985 333 233322111000 0000000011589999 99966655
Q ss_pred c-CCeEEEEEcC-Cceecccc--ccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc--eeeeeeee-
Q 005140 338 G-KNMISVYETE-SFTLIDKK--SLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE--LRQKNLFS- 409 (712)
Q Consensus 338 ~-d~~i~iwd~~-~~~~~~~~--~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~- 409 (712)
. ++.|.+|++. ++.+.... ... ..++..++|+|+|++|++. +..++.+.+|.++....+. +.......
T Consensus 159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~----~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 234 (347)
T 3hfq_A 159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA----GELSSQIASLKYDTQTGAFTQLGIVKTIPA 234 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE----ETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE----eCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence 5 8899999998 45432211 121 2257889999999977652 2345556666665433332 11111111
Q ss_pred -----ecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 410 -----VSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 410 -----~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.....+.|+|+|++|++... ++. +.+|++...+.......+..+...+.+++|+|+|++|+++..
T Consensus 235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~---------v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNT---------LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp TCCSCCEEEEEEECTTSCEEEEEEETTTE---------EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred CCCCCCcceeEEECCCCCEEEEEeCCCCE---------EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 12445789999998876544 333 788998754332233345455667889999999999999887
Q ss_pred CCCCCeEEEEEeec
Q 005140 484 DSPRPDISFYSMRT 497 (712)
Q Consensus 484 d~~~~~v~i~d~~~ 497 (712)
+.. .|.+|+++.
T Consensus 306 ~~~--~v~v~~~d~ 317 (347)
T 3hfq_A 306 NTD--NATLYARDL 317 (347)
T ss_dssp TTT--EEEEEEECT
T ss_pred CCC--cEEEEEEeC
Confidence 532 899997753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-16 Score=162.39 Aligned_cols=300 Identities=10% Similarity=0.082 Sum_probs=180.2
Q ss_pred cCCCcEEEEEec-----CceEEeeccc-Cc--ceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 222 SPLGTYLATVHR-----QGAAVWGGAN-TF--NRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 222 Spdg~~lat~~~-----~~i~iw~~~~-~~--~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
.+...+++.|+. .+|.+|.++. ++ ..+...+...+..++|||||++|++++.+. ...+.|.+|++.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~------~~~~~v~~~~~~ 83 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFS------KDQAAVSAFAFD 83 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCS------STTCEEEEEEEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccC------CCCCcEEEEEEe
Confidence 344455556542 2478886641 22 233333344588999999999999988751 112689999886
Q ss_pred C--Cce--eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccc---------
Q 005140 294 T--GKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSL--------- 358 (712)
Q Consensus 294 ~--g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~--------- 358 (712)
. |.. +.....+... ...++. ++++|++++ ++.|.+|++.....+.....
T Consensus 84 ~~~g~~~~~~~~~~~~~~---------------p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 84 KEKGTLHLLNTQKTMGAD---------------PCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp TTTTEEEEEEEEECSSSC---------------EEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred CCCCcEEEeeEeccCCCC---------------cEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 5 432 2233222211 123334 677666665 89999999975433221110
Q ss_pred -----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc----c-ce-----eeeee-eeecceeEEECcCCC
Q 005140 359 -----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK----E-EL-----RQKNL-FSVSDCKMYWQSSGD 422 (712)
Q Consensus 359 -----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~----~-~~-----~~~~~-~~~~~~~~~~s~~g~ 422 (712)
....+.+++|+|+|++|++. ...++.+.+|.++.... + .. ..... .......+.|+|+|+
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~----~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLAD----DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEE----ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CccccCCCcceEEEECCCCCEEEEE----eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 11235789999999977662 22344455555544332 1 10 11111 122334678999999
Q ss_pred EEEEEEc-ccccccccccccEEEEEEecCCcceeEEE---ecCCCCceEEEEEeeCCCEEEEEEcC--CCCCeEEEEEee
Q 005140 423 YLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEPKGHRFAVIHGD--SPRPDISFYSMR 496 (712)
Q Consensus 423 ~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp~g~~l~~~~~d--~~~~~v~i~d~~ 496 (712)
++++... ++. +.+|++... ....... ...+...+.+++|+|+|++|+++..+ + .|.+|+++
T Consensus 224 ~l~v~~~~~~~---------v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~---~i~v~~~~ 290 (361)
T 3scy_A 224 FAYLINEIGGT---------VIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD---GVAIFKVD 290 (361)
T ss_dssp EEEEEETTTCE---------EEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC---EEEEEEEC
T ss_pred EEEEEcCCCCe---------EEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC---EEEEEEEc
Confidence 9888763 333 788888732 1111111 22334557899999999999877765 4 89999996
Q ss_pred cccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEEC--Ccceeeeec---cccceeeEEEC
Q 005140 497 TAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV--DELETMATA---EHFMATDVEWD 564 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~--~~~~~~~~~---~~~~v~~~~~s 564 (712)
...+ ....+..+. +..+..++|+|+|++|++++.. ++.|.+|.+ .++++.... +...++|+.|.
T Consensus 291 ~~~g--~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 291 ETNG--TLTKVGYQLTGIHPRNFIITPNGKYLLVACRD--TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTTC--CEEEEEEEECSSCCCEEEECTTSCEEEEEETT--TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCC--cEEEeeEecCCCCCceEEECCCCCEEEEEECC--CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 3222 122444433 3467899999999999988741 688999654 466665443 44677888875
|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-19 Score=146.60 Aligned_cols=100 Identities=45% Similarity=0.812 Sum_probs=91.3
Q ss_pred ccCcccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005140 49 DDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 128 (712)
Q Consensus 49 ~~~~~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~ 128 (712)
+++|..+.+.+++|||+|||...++++++++..|+++|++||.|.. +.|+ +.+|+++|||||+|.+.++|.+|++.
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 5 KDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--DFYP--EEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp SSCCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--EECC--CBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred cCCCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--EEee--CCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 5566777888999999999988877777899999999999999999 9998 35899999999999999999999999
Q ss_pred hCCCccCCceEEEEEeeccccccc
Q 005140 129 TNGYKLDRAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 129 ~~~~~~~~~~~l~v~~~~~~~~~~ 152 (712)
|||..++++|.+.|....+.++|.
T Consensus 81 l~g~~~~g~~~l~V~~a~~~~k~~ 104 (105)
T 2nlw_A 81 ADGYKLDKQHTFRVNLFTDFDKYM 104 (105)
T ss_dssp CSSEECSTTCEEEEECSCCCCCCC
T ss_pred hCCcccCCCceEEEEEcchHhhhc
Confidence 999999998899999999888875
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-16 Score=159.53 Aligned_cols=299 Identities=12% Similarity=0.124 Sum_probs=182.8
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
..+...+++.|+.... ..+.|.+|.+ .+|+.......+..... .++|+| ||++|++++
T Consensus 9 ~~~~~~~~~vg~y~~~------~~~~i~~~~~d~~~g~~~~~~~~~~~~p~-------------~l~~sp-dg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSELTMLVGTYTSG------NSKGIYTFRFNEETGESLPLSDAEVANPS-------------YLIPSA-DGKFVYSVN 68 (361)
T ss_dssp GGGGEEEEEEEECCSS------SCCEEEEEEEETTTCCEEEEEEEECSCCC-------------SEEECT-TSSEEEEEE
T ss_pred hCCCceEEEEEeccCC------CCCCEEEEEEeCCCCCEEEeecccCCCCc-------------eEEECC-CCCEEEEEE
Confidence 3444556666654411 1156888866 45654322211222111 489999 999998887
Q ss_pred -C----CeEEEEEcCC--ceecc--cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee---e
Q 005140 339 -K----NMISVYETES--FTLID--KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK---N 406 (712)
Q Consensus 339 -d----~~i~iwd~~~--~~~~~--~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~ 406 (712)
+ +.|.+|++.. +.+.. ....+......+++ ++++|++. ...+ ..+.+|++.....+... .
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~----~~~~--~~v~~~~~~~~g~~~~~~~~~ 140 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTA----NYSG--GSITVFPIGQDGALLPASDVI 140 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEE----ETTT--TEEEEEEBCTTSCBCSCSEEE
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEE----ECCC--CEEEEEEeCCCCcCcccceeE
Confidence 3 7999998864 44322 11112334667777 78877762 1133 44556665433222111 0
Q ss_pred eee-----------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc----c-e------eEEEecCCCC
Q 005140 407 LFS-----------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI----P-I------EVLELDNKND 464 (712)
Q Consensus 407 ~~~-----------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~-~------~~~~l~~h~~ 464 (712)
.+. .....+.|+|+|+++++..... ..+.+|++..... . . ....+ .+..
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 211 (361)
T 3scy_A 141 EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT--------DQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGS 211 (361)
T ss_dssp ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTC
T ss_pred EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC--------CEEEEEEEcCCCCcccccceeecccccceec-CCCC
Confidence 000 0113478999999888765421 1278888876542 1 1 12233 3455
Q ss_pred ceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC---C--CceeEEEEccCCCeEEEEeccCCCce
Q 005140 465 KIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---G--KQANALFWSPSGRFIVLAGLKGFNGQ 538 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~--~~v~~l~~spdg~~l~~~~~~~~dg~ 538 (712)
.+..++|+|+|++++++.. ++ .|.+|++.++. +..+..+. . .....++|||||++|+++..+. ++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~---~v~v~~~~~g~----~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-~~~ 283 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGG---TVIAFRYADGM----LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-ADG 283 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTC---EEEEEEEETTE----EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-SCE
T ss_pred CCeEEEEcCCCCEEEEEcCCCC---eEEEEEecCCc----eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-CCE
Confidence 6789999999999988874 55 89999997543 22333332 1 2357899999999998877621 378
Q ss_pred EEEEECC--cce--eeeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEEec---Cceeee---ecccceeeeEE
Q 005140 539 LEFYNVD--ELE--TMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN---GKLLYR---TLKDHFFQFLW 607 (712)
Q Consensus 539 v~iwd~~--~~~--~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~---g~~~~~---~~~~~i~~~~w 607 (712)
|.+|+++ +++ .+... ....+.+++|+|||++|++++.. ++.+.+|.++ |.+... .+...+.++.|
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~----~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD----TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT----TTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC----CCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 9999986 344 23222 13467899999999999998853 7899998775 333322 24467888888
Q ss_pred e
Q 005140 608 R 608 (712)
Q Consensus 608 ~ 608 (712)
.
T Consensus 360 ~ 360 (361)
T 3scy_A 360 V 360 (361)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=177.60 Aligned_cols=300 Identities=10% Similarity=0.079 Sum_probs=182.6
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+.+++|||||++|++..... ....|++||+.+++..+....+.... . .+.||| ||++|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~-------g~~~l~~~d~~~~~~~~l~~~~~~~~------------~-~~~~sp-dg~~l~ 96 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD-------GNRNYYLLNLETQQAVQLTEGKGDNT------------F-GGFIST-DERAFF 96 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT-------SSCEEEEEETTTTEEEECCCSSCBCT------------T-TCEECT-TSSEEE
T ss_pred eecCcCCCCCCEEEEEEecC-------CCceEEEEECCCCcEEEeecCCCCcc------------c-cceECC-CCCEEE
Confidence 67889999999998876541 11478999998877544433332211 1 368999 999998
Q ss_pred Eec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 336 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
+++ ++.|.+|++.++........+. .|+|+|+.|++ ........++. ..
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~g~~l~~-----~~~~~~~~~~~-------------------~~ 146 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQVIYTVDE------EWKGYGTWVAN-----SDCTKLVGIEI-------------------LK 146 (396)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCT------TEEEEEEEEEC-----TTSSEEEEEEE-------------------EG
T ss_pred EEEcCCcEEEEECCCCCcEEEEeccc------ccCCCCCEEEe-----ccCCccccccc-------------------cc
Confidence 888 7789999998775432211111 27788888887 33332222211 02
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCC---CCeE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSP---RPDI 490 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~---~~~v 490 (712)
..|+|+|+.+++...... .....||.++....... .+..+...+..++|+| +++.|++++.+.. ...|
T Consensus 147 ~~~spdg~~~~~~~~~~~------~~~~~l~~~d~~~g~~~--~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 147 RDWQPLTSWEKFAEFYHT------NPTCRLIKVDIETGELE--VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp GGCCCCCSHHHHHHHHHT------CCCEEEEEEETTTCCEE--EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred cccCCCCcceeeeeeccC------CCcceEEEEECCCCcEE--eeccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 357888887665431000 01124444443332222 2224467789999999 8998888875321 0367
Q ss_pred EEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCC--ceEEEEECCcceeeeeccccceeeEEECC-C
Q 005140 491 SFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFN--GQLEFYNVDELETMATAEHFMATDVEWDP-T 566 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~d--g~v~iwd~~~~~~~~~~~~~~v~~~~~sp-d 566 (712)
.+|++.++.. ..+.... ...+..++|||||++|++++..... +.|++||+.+++........... +.|+| |
T Consensus 219 ~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~d 293 (396)
T 3c5m_A 219 WLVNEDGSNV----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFD 293 (396)
T ss_dssp EEEETTSCCC----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSS
T ss_pred EEEECCCCce----eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCC
Confidence 8888754321 1221111 2246789999999998887652112 55999999877654332222233 89999 9
Q ss_pred CCEEEEEEccc-----------eeccccEEEEEecCceeeee--ccc-----------ceeeeEEecCCCCCCChhh
Q 005140 567 GRYVATAVTSV-----------HEMENGFNIWSFNGKLLYRT--LKD-----------HFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 567 g~~l~t~s~~~-----------~~~d~~v~iw~~~g~~~~~~--~~~-----------~i~~~~w~p~~~~l~s~~~ 619 (712)
|++|++++... ...+..+++|++.+..+... +.. ....+.|+|+++.|+..+.
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 99888765210 01146899999875443332 222 2567899999998876553
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-16 Score=163.11 Aligned_cols=251 Identities=10% Similarity=0.130 Sum_probs=158.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
.+..++|||||++|++++.+ .|.+|++. +|+....... +.... .++|+| ||
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-----------~v~~~~~~~~g~~~~~~~~~~~g~~~--------------~~~~sp-dg 94 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-----------KWSSFAVKSPTEIVHEASHPIGGHPR--------------ANDADT-NT 94 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-----------EEEEEEEEETTEEEEEEEEECCSSGG--------------GGCTTS-CC
T ss_pred CCcEEEECCCCCEEEEEccc-----------eEEEEEECCCCCEEEeeEeecCCCCc--------------cEEECC-CC
Confidence 58899999999999888765 69999997 7776543321 11111 478999 99
Q ss_pred CE--EEEe--------------cCCeEEEEEcC-Cceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 332 KY--FAKL--------------GKNMISVYETE-SFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 332 ~~--la~~--------------~d~~i~iwd~~-~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
++ ++++ .++.+.+|++. ++.+...... +...+.+++|+|+|++|++. . .+...
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~-----~-~~~~~ 168 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA-----D-LTANK 168 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE-----E-TTTTE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE-----c-CCCCE
Confidence 94 4443 47889999987 4544322211 23457888888888877651 1 11223
Q ss_pred EEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
|++|++.. +|+... ...+.++.|...+..++
T Consensus 169 v~~~~~~~---------------------~g~~~~----------------------------~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 169 LWTHRKLA---------------------SGEVEL----------------------------VGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEECT---------------------TSCEEE----------------------------EEEEECSSTTCCEEEEE
T ss_pred EEEEEECC---------------------CCCEEE----------------------------eeeEecCCCCCCCCEeE
Confidence 44444320 111100 00011212345688899
Q ss_pred EeeCCCEEEEEEc-CCCCCeEEEEEeecccccCc--eeEEEEeCCC------------ceeEEE-EccCCCeEEEEeccC
Q 005140 471 WEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGR--VSKLTTLKGK------------QANALF-WSPSGRFIVLAGLKG 534 (712)
Q Consensus 471 ~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~------------~v~~l~-~spdg~~l~~~~~~~ 534 (712)
|+|+|++++++.. ++ .|.+|+++...+... ...+..++.+ .+..++ |||||++|++++.+.
T Consensus 200 ~spdg~~l~v~~~~~~---~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 200 MHPTGNYLYALMEAGN---RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp ECTTSSEEEEEETTTT---EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred ECCCCCEEEEEECCCC---eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999988876 44 899998863222100 0122333221 367899 999999998876522
Q ss_pred CC----ceEEEEECC-cceeee----e-ccccceeeEEECC---CCCEEEEEEccceeccccEEEEEecCcee
Q 005140 535 FN----GQLEFYNVD-ELETMA----T-AEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 535 ~d----g~v~iwd~~-~~~~~~----~-~~~~~v~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
+ +.|.+|+++ ++++.. . .+...+..++|+| ||++|++++.. ++.|.||++++..+
T Consensus 277 -~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~----~~~v~v~~~~~~~l 344 (365)
T 1jof_A 277 -KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ----EGWLEIYRWKDEFL 344 (365)
T ss_dssp -STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS----SCEEEEEEEETTEE
T ss_pred -CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC----CCeEEEEEEchhhC
Confidence 2 289999986 555432 1 1334567899999 89999998862 48999999986644
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-16 Score=162.65 Aligned_cols=251 Identities=10% Similarity=0.046 Sum_probs=160.0
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecC---CCeeEEEecCCCCE--EEEEc-------------CCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAH---PQVKLIDFSPGEKY--LVTYS-------------SHE 275 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~---~~v~~i~~Spdg~~--l~t~s-------------~d~ 275 (712)
..+..++|||||++|++++.+.+.+|++..+++......+ ..+.+++|||||++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~- 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA- 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC-
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC-
Confidence 4678899999999999888878889998523333322221 23667999999995 44543 34
Q ss_pred CCCCcCCCccEEEEEEcc-CCceeeeccC----CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcC
Q 005140 276 PSNPRDANRVVINIFDVR-TGKVMRDFKG----SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETE 348 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~-~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~ 348 (712)
+.+.+|++. +|+....+.. +.... ..++|+| ||++++++. ++.|.+|++.
T Consensus 119 ---------g~v~v~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~sp-dG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 119 ---------GYGNVFSVSETGKLEKNVQNYEYQENTGI-------------HGMVFDP-TETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp ---------CEEEEEEECTTCCEEEEEEEEECCTTCCE-------------EEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred ---------ceEEEEccCCCCcCcceEeeEEeCCCCcc-------------eEEEECC-CCCEEEEEcCCCCEEEEEEEC
Confidence 789999996 4665443331 11111 1689999 999887765 7899999998
Q ss_pred -Cceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce---eeeeeee------e----
Q 005140 349 -SFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL---RQKNLFS------V---- 410 (712)
Q Consensus 349 -~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~------~---- 410 (712)
++++...... +..++..++|+|+|++|++. ...++.+.+|.++..+.+.. ....... .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~----~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL----MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE----ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE----ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 6654321112 23458999999999988762 12345566666665443321 1111110 1
Q ss_pred ---cceeEE-ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceEEEEEee---CCCEEEEEE
Q 005140 411 ---SDCKMY-WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEP---KGHRFAVIH 482 (712)
Q Consensus 411 ---~~~~~~-~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp---~g~~l~~~~ 482 (712)
....+. |+|+|++|+++...... ...+.+.+|++...+....... +..+...+..++|+| +|++|+++.
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~---~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKF---ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESST---TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred cccccccEEEECCCCCEEEEECCCCCC---CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 244678 99999998776543210 0011378999874333222111 323455677899999 899999987
Q ss_pred cC-CCCCeEEEEEeecc
Q 005140 483 GD-SPRPDISFYSMRTA 498 (712)
Q Consensus 483 ~d-~~~~~v~i~d~~~~ 498 (712)
.+ + .|.+|+++..
T Consensus 329 ~~~~---~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEG---WLEIYRWKDE 342 (365)
T ss_dssp SSSC---EEEEEEEETT
T ss_pred cCCC---eEEEEEEchh
Confidence 75 5 8999998653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-16 Score=162.21 Aligned_cols=273 Identities=13% Similarity=0.063 Sum_probs=172.5
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.++++++++++++++.+ +.|.+||+.+++.++.+..+. ... .++|+| +|++++
T Consensus 4 g~~~~~~~~~~v~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~~~ 58 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP----------NNLHVVDVASDTVYKSCVMPDKFGPG--------------TAMMAP-DNRTAY 58 (349)
T ss_dssp CCCCCTTCEEEEEEETT----------TEEEEEETTTTEEEEEEECSSCCSSC--------------EEEECT-TSSEEE
T ss_pred cccccCCCEEEEEeCCC----------CeEEEEECCCCcEEEEEecCCCCCCc--------------eeEECC-CCCEEE
Confidence 46789999999999998 899999999999888877654 222 689999 998665
Q ss_pred Ee-c-CCeEEEEEcCCceeccccccc------ccCeeeEEECCCCCeEEEEeec-----CCCCCCCeEEEEEecCCccce
Q 005140 336 KL-G-KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTDPIISLFVPE-----LGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 336 ~~-~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~~-----~~~~~~~~~i~~~~~~~~~~~ 402 (712)
.+ . ++.|.+|++.+++.+...... ...+..++|+|+|++|++.... .........|++|++.+.+..
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 44 4 899999999988766443322 1237889999999999873211 000001247888888764432
Q ss_pred eeeee--eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-C---------------
Q 005140 403 RQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-D--------------- 464 (712)
Q Consensus 403 ~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-~--------------- 464 (712)
..... .......+.|+|+|+ +++...+ +.+|++.... ....+.. +. .
T Consensus 139 ~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~-----------i~~~d~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 139 KPVRTFPMPRQVYLMRAADDGS-LYVAGPD-----------IYKMDVKTGK-YTVALPL--RNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp CCSEEEECCSSCCCEEECTTSC-EEEESSS-----------EEEECTTTCC-EEEEECS--TTCCCTTBCCCBCCCCCCC
T ss_pred ceeeeccCCCcccceeECCCCc-EEEccCc-----------EEEEeCCCCc-eeccccc--cccCCccccCccceeeecC
Confidence 22111 122345567999999 5553221 4455433221 1111111 11 0
Q ss_pred --------ceEEEEEeeCCCEE----------EEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEcc-CC
Q 005140 465 --------KIIAFAWEPKGHRF----------AVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP-SG 524 (712)
Q Consensus 465 --------~v~~~~~sp~g~~l----------~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg 524 (712)
....+++++++... +.... .+ .+.++++.. .+..+..++|+| +|
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~sp~dg 267 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG---KTHTQEFAD-------------LTELYFTGLRSPKDP 267 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC---CEEEEEEEE-------------CSSCEEEEEECSSCT
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC---cEEeccccc-------------CCCcceeeEecCCCC
Confidence 23445666554211 10111 11 344443311 234578899999 99
Q ss_pred CeEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeee
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYR 596 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~ 596 (712)
++++++ ++.|.+||+.+++.+... ....+.+++|+|+|++|++++. ++.+.+|+... +.+..
T Consensus 268 ~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 268 NQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT-----FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp TEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB-----SSEEEEEETTTTEEEEE
T ss_pred CEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC-----CCeEEEEeccccceeee
Confidence 999887 479999999998876653 3345789999999999998776 89999999874 44433
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-16 Score=161.52 Aligned_cols=288 Identities=13% Similarity=0.166 Sum_probs=178.2
Q ss_pred CeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEeecccCcceeeeecC------
Q 005140 191 TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRLMRYAH------ 253 (712)
Q Consensus 191 ~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~~~~~~------ 253 (712)
++.+.+|+. ..++....+..+..+ .++|||||++|++++. ++ |.+||.. +.+.+.++..
T Consensus 30 d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEET-TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCC
T ss_pred cCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccccc
Confidence 457778886 455555566666555 8999999999998862 33 7899998 7777766642
Q ss_pred --CCeeEEEecCCCCEEEEEcC--CCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 254 --PQVKLIDFSPGEKYLVTYSS--HEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 254 --~~v~~i~~Spdg~~l~t~s~--d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
.....++|||||++|+++.. + +.|.+||+.+++.+.. +..... | .+.+.|
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~----------~~v~v~d~~~~~~~~~~i~~~~~--------------~-~v~~~p 160 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPA----------TSIGIVDVAKGDYVEDVTAAAGC--------------W-SVIPQP 160 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSS----------EEEEEEETTTTEEEEEEGGGTTE--------------E-EEEECT
T ss_pred cCCCcceEEECCCCCEEEEECCCCC----------CeEEEEECCCCcEEEEEecCCCc--------------c-eeEEcC
Confidence 23778999999999998863 4 7899999999988877 654321 2 145566
Q ss_pred CCC-CEEEEec-CCeEEEEEcCC-ceecccc----ccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 329 GKD-KYFAKLG-KNMISVYETES-FTLIDKK----SLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 329 ~dg-~~la~~~-d~~i~iwd~~~-~~~~~~~----~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
++ ..+++.+ ||.+.+|++.. ++..... .++.. ....+.++|++..+++. +.++ .++.++.....
T Consensus 161 -~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~--~v~v~d~~~~~ 232 (361)
T 2oiz_A 161 -NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFV-----SYYG--NVYSADFSGDE 232 (361)
T ss_dssp -TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEE-----BTTS--EEEEEECSSSS
T ss_pred -CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEE-----eCCC--eEEEEEecCCC
Confidence 65 3444444 88888888764 4333110 00110 11123335556555541 1222 34444442211
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC-CcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-DIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
.. ++ ..|.+... ..... . . ......++++|++++++
T Consensus 233 ~~---------------------~~-----------------~~~~~~~~~~~~~~-~-~---p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 233 VK---------------------VD-----------------GPWSLLNDEDKAKN-W-V---PGGYNLVGLHRASGRMY 269 (361)
T ss_dssp CE---------------------EE-----------------EEEESCCHHHHHTT-C-E---ECCSSCEEEETTTTEEE
T ss_pred ce---------------------ec-----------------ccccccCccccccc-c-c---cCCeeEEEEecCCCeEE
Confidence 00 00 00000000 00000 0 0 01111267899988887
Q ss_pred EEEc-CC-------CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc--ee
Q 005140 480 VIHG-DS-------PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ET 549 (712)
Q Consensus 480 ~~~~-d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~--~~ 549 (712)
++.. ++ ....|.+||+.+.+ .+.++..+....++|+|||++|++++ .+.|.+||..++ ++
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~------~v~~i~~~~p~~ia~spdg~~l~v~n----~~~v~v~D~~t~~l~~ 339 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQ------RVARIPGRDALSMTIDQQRNLMLTLD----GGNVNVYDISQPEPKL 339 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTE------EEEEEECTTCCEEEEETTTTEEEEEC----SSCEEEEECSSSSCEE
T ss_pred EEEccCCCcccccCCCceEEEEECCCCc------EEEEEecCCeeEEEECCCCCEEEEeC----CCeEEEEECCCCccee
Confidence 7654 21 12379999987654 55555533389999999999988776 389999999999 88
Q ss_pred eeec--cccceeeEEECCCCC
Q 005140 550 MATA--EHFMATDVEWDPTGR 568 (712)
Q Consensus 550 ~~~~--~~~~v~~~~~spdg~ 568 (712)
+.+. .......++++|+|+
T Consensus 340 ~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 340 LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTSCSSEEEEEECCCSC
T ss_pred eEEeccCCCCcEEEEecCCCC
Confidence 8773 346678899999996
|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-18 Score=132.81 Aligned_cols=80 Identities=45% Similarity=0.785 Sum_probs=73.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||...+++++.++++|+++|++||.|.+ +.|+ +.+|+++|||||+|.++++|.+|++.|||..++++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 479999999998888888899999999999999999 9988 358999999999999999999999999999999976
Q ss_pred EEEE
Q 005140 139 IFAV 142 (712)
Q Consensus 139 ~l~v 142 (712)
.++|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 6665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-13 Score=149.95 Aligned_cols=327 Identities=13% Similarity=0.149 Sum_probs=213.7
Q ss_pred CCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCcee
Q 005140 223 PLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVM 298 (712)
Q Consensus 223 pdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~ 298 (712)
|.+.++++...++ |.++|.. +.+.+.++... .+..+.|||||++|++++.+ +.|.+||+. +++.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~d----------g~V~viD~~~~t~~~v 233 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS-TYEIKTVLDTGYAVHISRLSASGRYLFVIGRD----------GKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT-TCCEEEEEECSSCEEEEEECTTSCEEEEEETT----------SEEEEEETTSSSCCEE
T ss_pred CCceEEEEeCCCCeEEEEECC-CCeEEEEEeCCCCccceEECCCCCEEEEEcCC----------CeEEEEECCCCCCcEe
Confidence 4445555555566 8899999 88888887655 47899999999999999888 899999995 88888
Q ss_pred eeccCCCcccccCCCCCcCCCCcCeEEec----CCCCCEEEEec--CCeEEEEEcCCceeccccccc-----------cc
Q 005140 299 RDFKGSADEFAVGGTGGVAGVSWPVFRWG----GGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-----------VE 361 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~-----------~~ 361 (712)
..+....... .+.|| | ||++++.+. ++++.|+|..+++.+...... ..
T Consensus 234 ~~i~~G~~P~--------------~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 234 AEIKIGSEAR--------------SIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp EEEECCSEEE--------------EEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EEEecCCCCc--------------eeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 8877655444 68999 8 999998887 899999999988776543321 12
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-cceeEEECcCCCEEEEEEcccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
.+..+..++++..+++.. .....|++++......+....+... ....+.|+|+|++++++.....
T Consensus 299 rva~i~~s~~~~~~vv~~------~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn-------- 364 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNV------KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN-------- 364 (567)
T ss_dssp CEEEEEECSSSSEEEEEE------TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT--------
T ss_pred ceEEEEEcCCCCEEEEEe------cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCC--------
Confidence 467888899887766532 3345788888765443222221111 1123579999999988775432
Q ss_pred cEEEEEEecCCcceeEEEe---cCCCCceEEEEEeeCCCEEEEEE--cCCCCCeEEEEEeecccc-cCceeEEEEeCCC-
Q 005140 441 GFELFRIKERDIPIEVLEL---DNKNDKIIAFAWEPKGHRFAVIH--GDSPRPDISFYSMRTAQH-AGRVSKLTTLKGK- 513 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~~~~--~d~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~- 513 (712)
.+.++++... .....+.+ ..|.+.-..+ ++|++..+.+.+ +++ .|.+++..+... ...++.+.++...
T Consensus 365 ~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~---~Vsvid~~~~~~~~~~~kvv~~i~~~g 439 (567)
T 1qks_A 365 KLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDD---SVALIGTDPEGHPDNAWKILDSFPALG 439 (567)
T ss_dssp EEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred eEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCC---eEEEecCCCCCCccccCEEEEEEecCC
Confidence 1445444332 11222223 1343322233 578765555444 345 899999876321 1123455665532
Q ss_pred -ceeEEEEccCCCeEEEEeccCC----CceEEEEECCcc---------eeeeec-------cccceeeEEECCCCCEEEE
Q 005140 514 -QANALFWSPSGRFIVLAGLKGF----NGQLEFYNVDEL---------ETMATA-------EHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 514 -~v~~l~~spdg~~l~~~~~~~~----dg~v~iwd~~~~---------~~~~~~-------~~~~v~~~~~spdg~~l~t 572 (712)
.-..+..+|+|++|.+....+. .+.|.+||+.+. +.+... ....+..+.|+|+|+++.+
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF 519 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence 2244778999999998763221 359999999877 233211 1357889999999999887
Q ss_pred EEccceeccccEEEEEecCcee
Q 005140 573 AVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
+.......++.|.|+|.....+
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTEE
T ss_pred EeecCCCCCCcEEEEECCCceE
Confidence 7431111168999999764433
|
| >4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=133.25 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|++||||||+|.++++|.+|++.|||..++++
T Consensus 18 ~gt~lfV~nLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 18 QGTNLIVNYLPQ------NMTQDELRSLFSSIGEVES--AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478999999997 5558999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 90 -~l~V~~ 95 (99)
T 4fxv_A 90 -TIKVSY 95 (99)
T ss_dssp -ECEEEE
T ss_pred -EEEEEE
Confidence 787765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-16 Score=164.29 Aligned_cols=245 Identities=13% Similarity=0.111 Sum_probs=161.6
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCc----------ce------eeeecCCC-eeEEEecCCCCEEE----EEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTF----------NR------LMRYAHPQ-VKLIDFSPGEKYLV----TYS 272 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~----------~~------~~~~~~~~-v~~i~~Spdg~~l~----t~s 272 (712)
..++.+++|+++.+|++++.++++||+.. .. .. ...+++.. |.+++|||+|++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASGLQIFPTK-NLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHH-HHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCEEEEEEch-HhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 45789999999999999999998887653 11 01 11233343 99999999999999 788
Q ss_pred CCCCCCCcCCCccEEEEEEccCC--------c---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-C
Q 005140 273 SHEPSNPRDANRVVINIFDVRTG--------K---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-K 339 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d 339 (712)
.+ +.|+|||+.++ + .++.+.+|...+. +++|+| + +.+|++++ |
T Consensus 116 ~d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~~~las~s~D 171 (434)
T 2oit_A 116 YG----------SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-------------DMKWNP-TVPSMVAVCLAD 171 (434)
T ss_dssp TE----------EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-------------EEEECS-SCTTEEEEEETT
T ss_pred CC----------ceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-------------EEEECC-CCCCEEEEEECC
Confidence 88 99999998765 1 1455666666553 799999 8 78999888 9
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-------eeecc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-------FSVSD 412 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~ 412 (712)
++|++||+.++..+.....|...|.+++|+|+|++|++ ++.++.+++| +.. ......... +....
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~las-----gs~dg~v~iw--d~~-~~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAV-----GKQNGTVVQY--LPT-LQEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEE-----EETTSCEEEE--CTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEE-----EcCCCcEEEE--ccC-CcccccccCCcccCCCCceeE
Confidence 99999999987655444446678999999999999999 7777776655 443 121111111 12356
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc--ceeEEEec-------CCCCceEEEEEeeCCCEEEEEEc
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI--PIEVLELD-------NKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~-------~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
..+.|++++.++++....... ......+.+|++..... +.....+. +...+...+.+-++.+++++++.
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~--~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGT--LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCC--SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred EEEEEecCceEEEEEccCCCc--cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 678999988887665432110 01112367888875422 22112221 11222233444478888888777
Q ss_pred CCCCCeEEEEEe
Q 005140 484 DSPRPDISFYSM 495 (712)
Q Consensus 484 d~~~~~v~i~d~ 495 (712)
... .|.++..
T Consensus 322 ~s~--dv~vl~~ 331 (434)
T 2oit_A 322 AST--EVSILAR 331 (434)
T ss_dssp TCS--BCEEEEE
T ss_pred CCC--ceeEEEe
Confidence 542 5666664
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-14 Score=145.94 Aligned_cols=312 Identities=11% Similarity=0.049 Sum_probs=185.1
Q ss_pred CCCcEEEEEec------C-ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 223 PLGTYLATVHR------Q-GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 223 pdg~~lat~~~------~-~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
+++++++.... + .+.+||.. +++.+.++.......++|||||++|++++.......+....+.|.+||+.++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~-t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYT-NGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETT-TCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCCEEEEECCCCCccccCeEEEEECC-CCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 46777666542 3 37899998 7777777654432399999999999988631000000001168999999999
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
+.+..+........ ....+ + .++++| ||++|+.+. +++|.+||+.+++.+... +...+...+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~--~g~~p----~-~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~-i~~~~~~~v~~~p~~ 162 (361)
T 2oiz_A 92 TFEKEISLPPKRVQ--GLNYD----G-LFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDV-TAAAGCWSVIPQPNR 162 (361)
T ss_dssp CEEEEEEECTTBCC--BCCCG----G-GEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEE-GGGTTEEEEEECTTS
T ss_pred cEEEEEEcCccccc--cCCCc----c-eEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEE-ecCCCcceeEEcCCC
Confidence 98887764321100 00000 1 589999 999998775 589999999988776430 222333335566765
Q ss_pred C-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005140 373 P-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 451 (712)
Q Consensus 373 ~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 451 (712)
. .++. .+.++...++.+ ..+|+.... ....
T Consensus 163 ~~~~~~-----~~~dg~~~~v~~-----------------------~~~g~~~~~--------------------~~~~- 193 (361)
T 2oiz_A 163 PRSFMT-----ICGDGGLLTINL-----------------------GEDGKVASQ--------------------SRSK- 193 (361)
T ss_dssp SSEEEE-----EETTSSEEEEEE-----------------------CTTSSEEEE--------------------EECC-
T ss_pred CeeEEE-----ECCCCcEEEEEE-----------------------CCCCcEeee--------------------cccc-
Confidence 3 3332 112232222111 111111100 0000
Q ss_pred cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--C----------CceeEEE
Q 005140 452 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--G----------KQANALF 519 (712)
Q Consensus 452 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~----------~~v~~l~ 519 (712)
..+..+..+ ..+.++|++..+++.+.++ .|.++|+..... ..+..+. . .....++
T Consensus 194 -----~~~~~~~~~-~~~~~~~~g~~~~~~~~~~---~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 194 -----QMFSVKDDP-IFIAPALDKDKAHFVSYYG---NVYSADFSGDEV----KVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp -----CCSCTTTSC-BCSCCEECSSEEEEEBTTS---EEEEEECSSSSC----EEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred -----ceEcCCCCc-eEEEecccCCEEEEEeCCC---eEEEEEecCCCc----eecccccccCccccccccccCCeeEEE
Confidence 000011111 1234467888877777766 899999854321 1222211 1 0112379
Q ss_pred EccCCCeEEEEeccC--------CCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-
Q 005140 520 WSPSGRFIVLAGLKG--------FNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN- 590 (712)
Q Consensus 520 ~spdg~~l~~~~~~~--------~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~- 590 (712)
++|+|+.++++...+ ..+.|.+||+.+++.+.+...+.+.+++|+|||++|+++. .+.|.+||..
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n------~~~v~v~D~~t 334 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLD------GGNVNVYDISQ 334 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEEC------SSCEEEEECSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeC------CCeEEEEECCC
Confidence 999999888764300 1358999999999988764332289999999999887654 3899999987
Q ss_pred C--ceeeee--cccceeeeEEecCCC
Q 005140 591 G--KLLYRT--LKDHFFQFLWRPRPP 612 (712)
Q Consensus 591 g--~~~~~~--~~~~i~~~~w~p~~~ 612 (712)
+ +.+... .-.....++++|+|.
T Consensus 335 ~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 335 PEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CcceeeEEeccCCCCcEEEEecCCCC
Confidence 5 555553 235678899999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=163.57 Aligned_cols=259 Identities=10% Similarity=-0.032 Sum_probs=159.0
Q ss_pred CeeEEEecCCCCCCCcccccCCCcccc---------eEEEc--CCCcE-EEEEecCc--eEEeecc----cCcceeeeec
Q 005140 191 TDTEVLWNDARHLKPEPVYKRSYWTES---------FVQWS--PLGTY-LATVHRQG--AAVWGGA----NTFNRLMRYA 252 (712)
Q Consensus 191 ~~~~~~w~~~~~~~~~~~~~~~~~~v~---------~v~~S--pdg~~-lat~~~~~--i~iw~~~----~~~~~~~~~~ 252 (712)
++...+|.. ........+..|...+. .+.|+ |||++ ||+++... |.+|+.. +....+....
T Consensus 46 ~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 46 AGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp TTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred CCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 456678886 33444556677766666 66676 99999 88887644 4455544 1112222211
Q ss_pred ---CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC------Cceeeecc-CCCcccccCCCCCcCCCCc
Q 005140 253 ---HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT------GKVMRDFK-GSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 253 ---~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~------g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (712)
+. .+.+++|||||++|++++.+............|++||+.+ +.. +.+. .+.....
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~------------ 191 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVT------------ 191 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEEC------------
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCccc------------
Confidence 23 3889999999999998876511000012225799999977 554 3443 3322221
Q ss_pred CeEEecCCCCCEEEEec-C--------CeEEEEEcC-Cc---eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 322 PVFRWGGGKDKYFAKLG-K--------NMISVYETE-SF---TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~-d--------~~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
.++||| ||++|++.+ + ..|.+|++. ++ ........+...+..++|+|||+++++ +..++.
T Consensus 192 -~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~-----~~~~~~ 264 (662)
T 3azo_A 192 -GPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA-----TDRTGW 264 (662)
T ss_dssp -CCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE-----ECTTSS
T ss_pred -CceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE-----ECCCCC
Confidence 579999 999998776 4 379999998 56 322211122456889999999995554 445566
Q ss_pred eEEEEEecCCccceeeeeeee--------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 389 ARVSLVQIPSKEELRQKNLFS--------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
.+||.++....+......... .....+.|+++|..+++... +. ..||.++..+... ..+.
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~---------~~l~~~d~~~~~~--~~l~ 332 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA---------AVLGILDPESGEL--VDAA 332 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS---------CEEEEEETTTTEE--EECC
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc---------cEEEEEECCCCcE--EEec
Confidence 789999875544222111110 01234677888888777665 44 6888887654433 4455
Q ss_pred CCCCceEEEEEeeCCCEEEEEEc
Q 005140 461 NKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 461 ~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.|...+..+ |+++++.+++.+.
T Consensus 333 ~~~~~~~~~-~s~~~~~~~~~~~ 354 (662)
T 3azo_A 333 GPWTEWAAT-LTVSGTRAVGVAA 354 (662)
T ss_dssp SSCCEEEEE-EEEETTEEEEEEE
T ss_pred CCCCeEEEE-EecCCCEEEEEEc
Confidence 666677665 2667776655443
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=130.68 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+++|+++|++||.|.+ +.|+.|+.||++||||||+|.+.++|++|++.|||..++++
T Consensus 6 ~~~lfV~nL~~------~~te~~L~~~F~~~G~i~~--v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr- 76 (110)
T 3s8s_A 6 LKEVTFARLND------NVRETFLKDMCRKYGEVEE--VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN- 76 (110)
T ss_dssp CCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CcEEEEECCCC------CCCHHHHHHHHHhcCCeeE--EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe-
Confidence 46999999997 4558999999999999999 99999999999999999999999999999999999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 77 ~i~V~~a~~ 85 (110)
T 3s8s_A 77 IIHAQLDIK 85 (110)
T ss_dssp ECEEEECST
T ss_pred EEEEEECCC
Confidence 788776543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-15 Score=155.37 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=117.6
Q ss_pred CCcccceEEEcCCCcEEE----EEecCc-eEEeecccCc--------ce---eeee-cCC-CeeEEEecCC-CCEEEEEc
Q 005140 212 SYWTESFVQWSPLGTYLA----TVHRQG-AAVWGGANTF--------NR---LMRY-AHP-QVKLIDFSPG-EKYLVTYS 272 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~la----t~~~~~-i~iw~~~~~~--------~~---~~~~-~~~-~v~~i~~Spd-g~~l~t~s 272 (712)
+...|++++|||+|++|| +++.++ |+|||+. +. +. +..+ .|. .|.+++|+|+ +.+|++++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR-TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHH-HHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcc-ccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 445799999999999999 677777 8899987 33 11 2222 233 5999999998 89999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
.| ++|++||++++..+....+|...+. +++|+| +|++|++++ |+.|++||+. +.
T Consensus 170 ~D----------g~v~iwD~~~~~~~~~~~~~~~~v~-------------~v~wsp-dg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 170 AD----------GSIAVLQVTETVKVCATLPSTVAVT-------------SVCWSP-KGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp TT----------SCEEEEEESSSEEEEEEECGGGCEE-------------EEEECT-TSSCEEEEETTSCEEEECTT-CC
T ss_pred CC----------CeEEEEEcCCCcceeeccCCCCcee-------------EEEEcC-CCCEEEEEcCCCcEEEEccC-Cc
Confidence 99 9999999999877666666655543 799999 999999999 9999999998 33
Q ss_pred eccccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 352 LIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 352 ~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.......+ ...|.+++|++++.+++++....+.-.....+.+|++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 22222111 1268999999999888776543211122234556666543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=163.78 Aligned_cols=297 Identities=10% Similarity=-0.042 Sum_probs=175.5
Q ss_pred ccccCCCcccceEEEcCCCcEEEEE--ecCc-eEEeecccCcceeeee-cC-CCee---------EEEec--CCCCE-EE
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATV--HRQG-AAVWGGANTFNRLMRY-AH-PQVK---------LIDFS--PGEKY-LV 269 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~--~~~~-i~iw~~~~~~~~~~~~-~~-~~v~---------~i~~S--pdg~~-l~ 269 (712)
..+.+|...+..++||+++.++++. +.++ ..||....... ..++ .+ ..+. .+.|+ |||++ |+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-cceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567788899999999988777777 3355 66887541332 2222 22 2355 56565 99999 88
Q ss_pred EEcCCCCCCCcCCCccEEEEEEcc--C-CceeeeccC-----CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C-
Q 005140 270 TYSSHEPSNPRDANRVVINIFDVR--T-GKVMRDFKG-----SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K- 339 (712)
Q Consensus 270 t~s~d~~~~~~~~~~~~I~iwd~~--~-g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d- 339 (712)
+++.. ...|++|++. + +. .+.+.. +.... ..++||| ||++|++++ +
T Consensus 96 ~~~~~---------~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~-------------~~~~~sp-Dg~~l~~~~~~~ 151 (662)
T 3azo_A 96 FTHFG---------DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRW-------------ADPVLLP-ERGEVWCMAEEF 151 (662)
T ss_dssp EEBTT---------TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEE-------------EEEEEET-TTTEEEEEEEEE
T ss_pred EEECC---------CCeEEEEcCCCCCCCC-CEeccCCccCCCCccc-------------cCcEECC-CCCEEEEEEecc
Confidence 76643 0567777765 2 43 444444 22222 1689999 999999887 5
Q ss_pred ---------CeEEEEEcCC------ceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCC-CCCeEEEEEecC-Ccc-
Q 005140 340 ---------NMISVYETES------FTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGG-NQPARVSLVQIP-SKE- 400 (712)
Q Consensus 340 ---------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~-~~~~~i~~~~~~-~~~- 400 (712)
..|.+|++.+ +... ... .+...+..++|||||++|++........ -....||++++. +..
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred cCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999987 5432 222 2234578899999999998743211000 023678999887 341
Q ss_pred -ceeeeee-eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc---------eEEE
Q 005140 401 -ELRQKNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK---------IIAF 469 (712)
Q Consensus 401 -~~~~~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~---------v~~~ 469 (712)
....... +......+.|+|+|+++++...++. ..||.++..+... ..+..+... +.++
T Consensus 231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~---------~~l~~~~~~~~~~--~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW---------WNLHRVDPATGAA--TQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS---------CEEEEECTTTCCE--EESSCCSSBSSCCCCSTTCCSE
T ss_pred cccEEeCCCCCceEcceEECCCCeEEEEECCCCC---------eEEEEEECCCCce--eecccccccccCccccccCceE
Confidence 2222211 1344556789999994444433322 3677766433222 223222222 4578
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccC-CCceEEEEECCc
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDE 546 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~ 546 (712)
+|+|+++.++++.. + .++||.++...+ .+..+..+ .+..+ |+++++.+++.+.+. ....|+++|+.+
T Consensus 300 ~~~~~~~~~~~~~~-~---~~~l~~~d~~~~-----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 300 APLANGLIAVVHGK-G---AAVLGILDPESG-----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp EECTTSCEEEEEBS-S---SCEEEEEETTTT-----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred eEeCCCEEEEEEEc-C---ccEEEEEECCCC-----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 89999998888776 6 677775543222 23444433 34444 267777655543321 124677778776
Q ss_pred ceee
Q 005140 547 LETM 550 (712)
Q Consensus 547 ~~~~ 550 (712)
++..
T Consensus 370 g~~~ 373 (662)
T 3azo_A 370 GRAR 373 (662)
T ss_dssp CCEE
T ss_pred CceE
Confidence 6543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-14 Score=144.44 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=166.5
Q ss_pred ccceEEEcCCCcEEEEEec---------Cc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 215 TESFVQWSPLGTYLATVHR---------QG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~---------~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.+..++| ||++||+... ++ +.+|+.. ++.. ..+ ..+..++|||||++|++++.+.. ...
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~-~~~~-~~l--~~~~~~~~SpDg~~la~~~~~~~-----~~~ 84 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK-NNAR-RFI--ENATMPRISPDGKKIAFMRANEE-----KKV 84 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT-TCCE-EEE--ESCEEEEECTTSSEEEEEEEETT-----TTE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCC-CCce-EEc--ccCCCeEECCCCCEEEEEEeccC-----CCc
Confidence 4566778 9999988641 22 6788988 4443 223 56889999999999998875410 012
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C------------------------
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K------------------------ 339 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d------------------------ 339 (712)
..|++|++.+++.......+. +. .++||| ||+.|++++ +
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~--~~-------------~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN--IR-------------SLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE--EE-------------EEEECT-TSSEEEEEEECCCC---------CCCC--------
T ss_pred ceEEEEECCCCceEEEEcCCC--cc-------------ceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 468899988877655444333 21 689999 999988876 3
Q ss_pred ---CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC--C-CeEEEEEecCCccceeeeeeeeecce
Q 005140 340 ---NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN--Q-PARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 340 ---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
..|.+|++.++..+..... . .+..++|+|+| ++++. ....... . ...||.++ ..+ ....... ...
T Consensus 149 ~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~-~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~- 219 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV-PHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSF- 219 (347)
T ss_dssp -CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE-ECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESE-
T ss_pred CccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE-ecccccccccccccEEEeC--CCc-eEEeccC-cce-
Confidence 5688999988765322222 2 78899999999 54442 1110001 2 56888888 332 1111111 222
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceEE-EEEeeCCCEEEEEEcCCCCCeEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIA-FAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~-~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
..++|+|++|++.+.+... .......||.++ .+. . ..+ ..|...+.+ ++|+ +| .+++++.++ .++
T Consensus 220 -~~~spdg~~l~~~~~~~~~---~~~~~~~l~~~d-~~~-~--~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~---~~~ 286 (347)
T 2gop_A 220 -YAVDSDGERILLYGKPEKK---YMSEHNKLYIYD-GKE-V--MGILDEVDRGVGQAKIKD-GK-VYFTLFEEG---SVN 286 (347)
T ss_dssp -EEEEECSSCEEEEECCSSS---CCCSSCEEEEEC-SSC-E--EESSTTCCSEEEEEEEET-TE-EEEEEEETT---EEE
T ss_pred -eeECCCCCEEEEEEccccC---CccccceEEEEC-CCc-e--EeccccCCcccCCccEEc-Cc-EEEEEecCC---cEE
Confidence 2349999999888765321 001123555555 222 1 222 345677886 9999 88 777777787 899
Q ss_pred EEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceE-EEEECC
Q 005140 492 FYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL-EFYNVD 545 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v-~iwd~~ 545 (712)
|| +.++. ...+.. ....+.+++|+| .++++++. ++.. .+|.++
T Consensus 287 l~-~~~g~----~~~~~~-~~~~v~~~~~s~--~~~~~~~~---~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGE----IKPIAK-GRHWIMGFDVDE--IVVYLKET---ATRLRELFTWD 330 (347)
T ss_dssp EE-EESSS----EEEEEC-SSSEEEEEEESS--SEEEEEEC---SSSCCEEEEES
T ss_pred EE-EcCCc----eEEEec-CCCeEEeeeeeC--cEEEEEcC---CCChHHheEeC
Confidence 99 87322 222221 244688999999 56666654 3332 455444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-13 Score=147.96 Aligned_cols=342 Identities=9% Similarity=0.032 Sum_probs=210.8
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc-cCcceeeeecCC-CeeEE
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA-NTFNRLMRYAHP-QVKLI 259 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~-~~~~~~~~~~~~-~v~~i 259 (712)
-.|++..+++.+.+++. ...+.+..+.... ...++.|||||++|++++.++ |.+||.. .+.+.+.++... ....+
T Consensus 168 ~~~V~~~~~~~V~viD~-~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDG-STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp EEEEEETTTTEEEEEET-TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred eEEEEeCCCCeEEEEEC-CCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCcee
Confidence 35555666777888888 4555554554332 345899999999999998887 8899983 256666666543 37899
Q ss_pred Eec----CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCC-CcCCCCcCeEEecCCCCCEE
Q 005140 260 DFS----PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG-GVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 260 ~~S----pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~dg~~l 334 (712)
+|| |||++|++++..+ ++|.|+|..+.+.+..+......+. ... .... ....+..|+ ++..+
T Consensus 246 a~s~~~~pDGk~l~v~n~~~---------~~v~ViD~~t~~~~~~i~~~~~~~~--~~~~~p~~-rva~i~~s~-~~~~~ 312 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWP---------PQYVIMDGETLEPKKIQSTRGMTYD--EQEYHPEP-RVAAILASH-YRPEF 312 (567)
T ss_dssp EECCSTTCTTTEEEEEEEET---------TEEEEEETTTCCEEEEEECCEECTT--TCCEESCC-CEEEEEECS-SSSEE
T ss_pred EEccccCCCCCEEEEEEccC---------CeEEEEECCCCcEEEEEeccccccc--cccccCCC-ceEEEEEcC-CCCEE
Confidence 999 7999998887652 7899999999998887754321110 000 0000 000466788 76654
Q ss_pred EEe-c-CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-eee
Q 005140 335 AKL-G-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-FSV 410 (712)
Q Consensus 335 a~~-~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 410 (712)
+.. . .|.|.++|..+...+....+. .....++.|+|+|+++++. .....+|..++..+.+.+..... ...
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va------~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA------ANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE------EGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE------eCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 444 3 799999998754322211121 2236788999999998763 23445678889888765544433 111
Q ss_pred c----ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC------cceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 411 S----DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD------IPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 411 ~----~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
. ... .++|++..+.+...-+. +.+.+++..... ..+..+.. ....-..+..+|+++++.+
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~-------~~Vsvid~~~~~~~~~~~kvv~~i~~--~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGD-------DSVALIGTDPEGHPDNAWKILDSFPA--LGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSS-------SEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCTTCSEEEE
T ss_pred CCCcccee-eECCCCCcEEEeCCCCC-------CeEEEecCCCCCCccccCEEEEEEec--CCCCCEEEEeCCCCCeEEE
Confidence 1 112 24777665554432111 115666655421 11222232 2222244678999999988
Q ss_pred EEcCCC----CCeEEEEEeeccc--ccCc-eeEEEE-----e--CCCceeEEEEccCCCeEEEEecc--CCCceEEEEEC
Q 005140 481 IHGDSP----RPDISFYSMRTAQ--HAGR-VSKLTT-----L--KGKQANALFWSPSGRFIVLAGLK--GFNGQLEFYNV 544 (712)
Q Consensus 481 ~~~d~~----~~~v~i~d~~~~~--~~~~-~~~~~~-----~--~~~~v~~l~~spdg~~l~~~~~~--~~dg~v~iwd~ 544 (712)
...-++ ..+|.+||+.+.. +... +..+.. + .+..+..+.|+|+|+++.++... ..++.|.++|.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 763221 2389999997651 1111 122211 1 13468899999999998887432 23789999999
Q ss_pred Ccceeeeeccc
Q 005140 545 DELETMATAEH 555 (712)
Q Consensus 545 ~~~~~~~~~~~ 555 (712)
.+++++.....
T Consensus 537 ~t~~~~~~i~~ 547 (567)
T 1qks_A 537 KTLELKHVIKD 547 (567)
T ss_dssp TTTEEEEEECC
T ss_pred CCceEEEEeCC
Confidence 99998876554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-14 Score=145.28 Aligned_cols=280 Identities=10% Similarity=0.091 Sum_probs=170.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
..+..++| ||++|+....... ...+...+.|++||+.+++... + .... .++||| ||++
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~-l---~~~~--------------~~~~Sp-Dg~~ 72 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKAN-LKDNKYENTIVIENLKNNARRF-I---ENAT--------------MPRISP-DGKK 72 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEE-TTTTEEEEEEEEEETTTCCEEE-E---ESCE--------------EEEECT-TSSE
T ss_pred EEcccceE--CCcEEEEEEeecC-cccCCccceEEEEeCCCCceEE-c---ccCC--------------CeEECC-CCCE
Confidence 34778888 9999887642200 0001112689999998876533 3 1111 589999 9999
Q ss_pred EEEec-C---Ce--EEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCC---------------CC-----CC
Q 005140 334 FAKLG-K---NM--ISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELG---------------GG-----NQ 387 (712)
Q Consensus 334 la~~~-d---~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~---------------~~-----~~ 387 (712)
|++.+ + +. |.+|++.+++........ . +..++|+|+|+.|++...... .+ ..
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 99887 2 33 777788776644322222 2 889999999999998532100 00 12
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
...|+++++...+.+..... . ....+.|+|+| .++++..+.... .......+|.++ .+ ... .+..+ ..+.
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~--~~~~~~~l~~~d-~~-~~~--~l~~~-~~~~ 220 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIP--QYFKFWDIYIWE-DG-KEE--KMFEK-VSFY 220 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSC--CSSCCEEEEEEE-TT-EEE--EEEEE-ESEE
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccc--cccccccEEEeC-CC-ceE--EeccC-ccee
Confidence 46789999877654233332 3 56677999999 555554331100 000135677777 32 222 23233 4444
Q ss_pred EEEEeeCCCEEEEEEcCCC-----CCeEEEEEeecccccCceeEEEEeCC--CceeE-EEEccCCCeEEEEeccCCCceE
Q 005140 468 AFAWEPKGHRFAVIHGDSP-----RPDISFYSMRTAQHAGRVSKLTTLKG--KQANA-LFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~-l~~spdg~~l~~~~~~~~dg~v 539 (712)
+ ++|+|++|++++.+.. ...|.+|+ ++. ....... ..+.. +.|+ +| ++++++. ++.+
T Consensus 221 ~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~---~~~~ 285 (347)
T 2gop_A 221 A--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE------VMGILDEVDRGVGQAKIKD-GK-VYFTLFE---EGSV 285 (347)
T ss_dssp E--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC------EEESSTTCCSEEEEEEEET-TE-EEEEEEE---TTEE
T ss_pred e--ECCCCCEEEEEEccccCCccccceEEEEC--CCc------eEeccccCCcccCCccEEc-Cc-EEEEEec---CCcE
Confidence 4 4999999999886531 23677777 322 2222222 35665 8999 88 8888777 8899
Q ss_pred EEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccE-EEEEec
Q 005140 540 EFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGF-NIWSFN 590 (712)
Q Consensus 540 ~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v-~iw~~~ 590 (712)
+|| +.+++.... .+...+.+++|+| +.+++++. ++.. .||.++
T Consensus 286 ~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~-----~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKET-----ATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEEC-----SSSCCEEEEES
T ss_pred EEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcC-----CCChHHheEeC
Confidence 999 775554332 3456788999999 66666666 4443 777765
|
| >2lxi_A RNA-binding protein 10; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=127.84 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=69.4
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~ 136 (712)
+++|||+|||. +..+++|+++|++|| .|.+ |.|+.|+.||++||||||+|.+.++|.+|++.+ |+..+++
T Consensus 1 S~~i~v~nLp~------~~te~~l~~~F~~~G~~v~~--v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQ------AATEDDIRGQLQSHGVQARE--VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCS------SCCHHHHHHHHHHHTCCCSB--CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHHhCCEeEE--EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 57999999997 555999999999999 8999 999999999999999999999999999999987 4567888
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 73 r-~i~V~~a 80 (91)
T 2lxi_A 73 Q-KVSMHYS 80 (91)
T ss_dssp E-EEEEECC
T ss_pred E-EEEEEEc
Confidence 5 8888653
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-16 Score=126.09 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=68.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCe--eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc----
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV--IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK---- 133 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~--v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~---- 133 (712)
++|||+|||. ...++.|+++|++||. |.+ |.+++|+.||++||||||+|.++++|.+|++.|||..
T Consensus 10 ~tlfV~nL~~------~~tee~L~~~F~~~G~i~v~~--v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 10 DTIILRNIAP------HTVVDSIMTALSPYASLAVNN--IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp CEEEEESCCT------TCCHHHHHHHSTTTCCCCGGG--EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CEEEEeCCCC------cCCHHHHHHHHHhhCCccEEE--EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 4899999997 4458999999999996 456 9999999999999999999999999999999999974
Q ss_pred cCCceEEEEEeec
Q 005140 134 LDRAHIFAVNMFD 146 (712)
Q Consensus 134 ~~~~~~l~v~~~~ 146 (712)
++|+ .+.|....
T Consensus 82 i~Gr-~i~V~~Ak 93 (95)
T 2lkz_A 82 IDGK-TIGVDFAK 93 (95)
T ss_dssp ETTE-EEEEEECC
T ss_pred ECCE-EEEEEEcc
Confidence 7885 77777543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-13 Score=153.82 Aligned_cols=290 Identities=11% Similarity=0.004 Sum_probs=174.1
Q ss_pred cCCCcEEEEEecCc----eEEeeccc-Ccc--eee---eec--CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 222 SPLGTYLATVHRQG----AAVWGGAN-TFN--RLM---RYA--HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 222 Spdg~~lat~~~~~----i~iw~~~~-~~~--~~~---~~~--~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
+|+|+++++...++ -.||-... +.. .+. .+. +. .+..++|||||++||+++.... .....|+
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G-----~~~~~i~ 154 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG-----SDWVTIK 154 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT-----CSCEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC-----CceEEEE
Confidence 39999999876543 24554321 222 221 111 21 3789999999999998776510 1113899
Q ss_pred EEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCe----------------EEEEEcCCce
Q 005140 289 IFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM----------------ISVYETESFT 351 (712)
Q Consensus 289 iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~----------------i~iwd~~~~~ 351 (712)
+||+.+|+.+.....+.... .++||| ||+.|+++. ++. |.+|++.++.
T Consensus 155 v~d~~tg~~~~~~~~~~~~~--------------~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 155 FMKVDGAKELPDVLERVKFS--------------CMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp EEETTTTEEEEEEEEEECSC--------------CEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred EEECCCCCCCcccccCcccc--------------eEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 99999998765322221111 589999 999998887 544 9999998765
Q ss_pred ecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC------cc-ceeeeeeeeecceeEEECcC
Q 005140 352 LIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS------KE-ELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 352 ~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~------~~-~~~~~~~~~~~~~~~~~s~~ 420 (712)
....... +...+..+.|||||++|++..... .+....|+++++.. .. .+....... ......|+++
T Consensus 220 ~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~d 296 (710)
T 2xdw_A 220 SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKLIDNF-EGEYDYVTNE 296 (710)
T ss_dssp GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-SSCEEEEEEE
T ss_pred ccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEeeCCC-CcEEEEEecc
Confidence 3211211 122367899999999999854322 22256888888765 32 122222111 1122358999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCC--ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
|+.|++.+.... ....|+.++..+... ....+..|.. .+.+++|++++..+++...++. ..|.+|++.+
T Consensus 297 g~~l~~~s~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-~~l~~~~~~~ 368 (710)
T 2xdw_A 297 GTVFTFKTNRHS-------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK-NTLQLHDLAT 368 (710)
T ss_dssp TTEEEEEECTTC-------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE-EEEEEEETTT
T ss_pred CCEEEEEECCCC-------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE-EEEEEEECCC
Confidence 999988876432 113455544332210 1123334443 6888999976666666666651 2456666544
Q ss_pred ccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec-cCCCceEEEEECCcce
Q 005140 498 AQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELE 548 (712)
Q Consensus 498 ~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~-~~~dg~v~iwd~~~~~ 548 (712)
+. .+..+. ...+..++++|+++.+++... ....+.|+.||+.+++
T Consensus 369 g~------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 369 GA------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CC------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CC------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 33 233333 346788999999987765432 2246899999998766
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=117.93 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=71.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.+|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++ .
T Consensus 2 ~~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~ 72 (83)
T 3md1_A 2 FNLFVGDLNV------NVDDETLRNAFKDFPSYLS--GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR-P 72 (83)
T ss_dssp EEEEEECCCT------TCCHHHHHHHHTTSTTEEE--EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-E
T ss_pred eEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc-E
Confidence 5899999997 4558999999999999999 99999988999999999999999999999999999999885 7
Q ss_pred EEEEeec
Q 005140 140 FAVNMFD 146 (712)
Q Consensus 140 l~v~~~~ 146 (712)
+.|....
T Consensus 73 l~v~~a~ 79 (83)
T 3md1_A 73 LRINWAA 79 (83)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 7777644
|
| >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=115.55 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=66.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+.-|||+||+. ...++.|+++|.+||+|.+ +.+.. +||||||+|.++++|.+|++.|||..++++
T Consensus 6 ~~~wL~VgNL~~------~~te~~L~~lF~q~G~V~~--~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 6 GSSWLLLKNLTA------QIDGPTLRTLCMQHGPLVS--FHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCEEEEECCCT------TCCCHHHHHHHHHHSCEEE--EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEeCCCc------cCCHHHHHHHHHhhCCEEE--EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 367899999997 4448899999999999999 88865 789999999999999999999999999996
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
+++|....
T Consensus 72 -~I~V~~A~ 79 (89)
T 2wbr_A 72 -TIFAESPS 79 (89)
T ss_dssp -EEEEECCC
T ss_pred -EEEEEECC
Confidence 89998765
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-16 Score=123.21 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=67.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccC--eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG--VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g--~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+|||+|||. +..+++|+++|++|| .|.+ +.++.|+.+|++||||||+|.+.++|.+|++.|||..++++
T Consensus 2 ~~l~V~nL~~------~~t~~~l~~~F~~~G~~~v~~--v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTW------WTTDEDLTEAVHSLGVNDILE--IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCT------TCCHHHHHHHHHTTTCCCCCC--EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCC------CCCHHHHHHHHHHhCCCceEE--EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 3799999997 455899999999999 9999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 74 -~i~V~~~ 80 (90)
T 3p5t_L 74 -NPVVTPS 80 (90)
T ss_dssp -CCEECCC
T ss_pred -EEEEEEC
Confidence 6666653
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-15 Score=120.67 Aligned_cols=80 Identities=26% Similarity=0.501 Sum_probs=72.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 2 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~- 72 (96)
T 2x1f_A 2 SRVVYLGSIPY------DQTEEQILDLCSNVGPVIN--LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR- 72 (96)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CcEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe-
Confidence 47999999997 4458999999999999999 99999998999999999999999999999999999999984
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 73 ~l~V~~a~~ 81 (96)
T 2x1f_A 73 FLKCGYSSN 81 (96)
T ss_dssp ECEEEECSC
T ss_pred EEEEEEcCC
Confidence 888877544
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=118.32 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 6 ~~~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 76 (87)
T 3bs9_A 6 HFHVFVGDLSP------EITTAAIAAAFAPFGRISD--ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR- 76 (87)
T ss_dssp CEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred ceEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe-
Confidence 56999999997 4458999999999999999 99999988999999999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 77 ~l~v~~a 83 (87)
T 3bs9_A 77 QIRTNWA 83 (87)
T ss_dssp ECEEEEE
T ss_pred EEEEEec
Confidence 7777654
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=118.10 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 6 ~~~~l~V~nl~~------~~~~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAE------EVDDKVLHAAFIPFGDITD--IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHhccCCEEE--EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 4458999999999999999 99999988999999999999999999999999999999885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 78 -~l~v~~ 83 (85)
T 3mdf_A 78 -TIRVNL 83 (85)
T ss_dssp -ECEEEE
T ss_pred -EEEEEE
Confidence 777654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-12 Score=148.25 Aligned_cols=254 Identities=8% Similarity=-0.000 Sum_probs=157.9
Q ss_pred eEEecCCCCCEEEEec--CC----eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCC---------CC
Q 005140 323 VFRWGGGKDKYFAKLG--KN----MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG---------NQ 387 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~---------~~ 387 (712)
.++||| ||++||.+. +| .|++||+.+++.+... .....+..++|+|||+.|++........ ..
T Consensus 129 ~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 206 (710)
T 2xdw_A 129 GYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (710)
T ss_dssp EEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred EEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCcccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence 689999 999999876 23 8999999998866432 2222367899999999999843322000 12
Q ss_pred CeEEEEEecCCccce--e--eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec------CCcceeEE
Q 005140 388 PARVSLVQIPSKEEL--R--QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE------RDIPIEVL 457 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~--~--~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~ 457 (712)
...|+++++.+.... . ...........+.|+|+|++|++.+.+... ....+.++++.. ..... .
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~~~~--~ 280 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD----PVNRLWYCDLQQESNGITGILKW--V 280 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS----SCCEEEEEEGGGSSSSSCSSCCC--E
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC----CccEEEEEECcccccccCCccce--E
Confidence 456888888765421 1 111111223467899999999998764320 012244455443 11122 3
Q ss_pred EecCCCCceEEEEEeeCCCEEEEEEcCC-CCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCC
Q 005140 458 ELDNKNDKIIAFAWEPKGHRFAVIHGDS-PRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGF 535 (712)
Q Consensus 458 ~l~~h~~~v~~~~~sp~g~~l~~~~~d~-~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~ 535 (712)
.+..+...+.. .|+|+|+.|++.+..+ +...|.+|++.++... .+..+..-.. ..+..++|++++.+++++..
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~--- 355 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLH--- 355 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEE---
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEE---
Confidence 34445555544 5899999999888743 2447888998654310 1223322212 25778999987777777765
Q ss_pred Cc--eEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 536 NG--QLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 536 dg--~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++ .|++|++.+++.+.. .+...+..++++|++..|+....+ ....+.+++|++.
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS-FLSPGIIYHCDLT 413 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC-SSCCCEEEEEETT
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeC-CCCCCEEEEEECC
Confidence 55 577788856654333 445678889999999877655442 0115678888875
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-15 Score=119.33 Aligned_cols=80 Identities=26% Similarity=0.394 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 4 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHF------NITEDMLRGIFEPFGKIDN--IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 357999999997 4558899999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 76 -~l~V~~a~ 83 (95)
T 2dnz_A 76 -PMRVGHVT 83 (95)
T ss_dssp -CCEEEESS
T ss_pred -EEEEEEcc
Confidence 77777643
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-15 Score=122.08 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..++.|+++|++||.|.+ |.|+.|+. |++||||||+|.+.++|.+|+. +||..++++
T Consensus 11 ~~~lfV~~Lp~------~~te~~L~~~F~~~G~v~~--v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr- 79 (103)
T 1s79_A 11 NRSVYIKGFPT------DATLDDIKEWLEDKGQVLN--IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET- 79 (103)
T ss_dssp GGCEEEECCCT------TCCHHHHHHHHHTSSCEEE--EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHhhcCCEEE--EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCE-
Confidence 46899999997 4558999999999999999 99999996 9999999999999999999999 999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|....+
T Consensus 80 ~l~V~~~~~ 88 (103)
T 1s79_A 80 DLLILFKDD 88 (103)
T ss_dssp TCEEEEHHH
T ss_pred EEEEEEchH
Confidence 777765443
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-15 Score=120.17 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=72.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 7 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSY------TSSEEDLEKLFSAYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356999999997 4448899999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 79 -~l~V~~a~~ 87 (99)
T 1whw_A 79 -MLHVLPSTI 87 (99)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEEcCC
Confidence 788877543
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=123.92 Aligned_cols=77 Identities=29% Similarity=0.353 Sum_probs=68.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.|+.|+ +.+||||||+|.+.++|.+|++.|||..++++
T Consensus 5 ~~~lfV~nLp~------~~te~~L~~~F~~~G~v~~--v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~- 73 (115)
T 4f25_A 5 SGNIFIKNLDK------SIDNKALYDTFSAFGNILS--CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR- 73 (115)
T ss_dssp CCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEECCCCC------CCCHHHHHHHHhccCCEEE--EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 45899999997 4558999999999999999 9999996 55899999999999999999999999999985
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 74 ~i~V~~a~ 81 (115)
T 4f25_A 74 KVFVGRFK 81 (115)
T ss_dssp ECEEEESS
T ss_pred EEEEEECC
Confidence 78877643
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-15 Score=120.85 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSE------DTRETDLQELFRPFGSISR--IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp SSEEEEEESCCT------TCCHHHHHTTSTTTCCEEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 457999999997 4558999999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 86 -~l~v~~a~ 93 (103)
T 2cq0_A 86 -ILNVEWAK 93 (103)
T ss_dssp -ECEEEESS
T ss_pred -EEEEEECC
Confidence 78877643
|
| >2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-15 Score=121.69 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCEEEECCC----CCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCC----HHH----HHHHH
Q 005140 59 GNIIVVDNL----PVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNT----PQE----AELAK 126 (712)
Q Consensus 59 ~~~~~v~~l----p~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~----~~~----a~~a~ 126 (712)
.+.|||+|| |...+ +..|+.+|++||+|.+ +.++.|++||+++|||||+|.+ +++ |.+|+
T Consensus 2 p~kI~VgnL~~~~~~~tt------e~~Lk~~Fs~fGeV~~--~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi 73 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQ------DISIKNYFKKYGEISH--FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAV 73 (136)
T ss_dssp CCEEEEEESSSSCCCCCC------HHHHHHHHHTTSCCSE--EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCCCC------HHHHHHHHHhcCCeEE--EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHH
Confidence 368999999 97443 8999999999999999 9999999999999999999996 433 88998
Q ss_pred H--HhCCCccCCceEEEEEeecc
Q 005140 127 E--KTNGYKLDRAHIFAVNMFDD 147 (712)
Q Consensus 127 ~--~~~~~~~~~~~~l~v~~~~~ 147 (712)
. .+||..++|+ .++|+.-.+
T Consensus 74 ~~~~lng~~I~Gr-~irV~ln~~ 95 (136)
T 2j8a_A 74 RKHESSGCFIMGF-KFEVILNKH 95 (136)
T ss_dssp HHTTTTCEEETTE-EEEEEECCT
T ss_pred HHhhhcCCeecCc-EEEEEECcc
Confidence 8 7899999996 898886443
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=120.62 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=73.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 13 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDE------KVSEPLLWELFLQAGPVVN--THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3467999999997 4458899999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 85 ~-~l~v~~a~ 93 (105)
T 1x5u_A 85 K-PIRVNKAS 93 (105)
T ss_dssp C-BCEEEETT
T ss_pred e-EEEEEECC
Confidence 5 77777643
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-15 Score=118.70 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 15 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 15 SKSTVYVSNLPF------SLTNNDLYRIFSKYGKVVK--VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CTTSEEEESCCT------TSCHHHHHHHTTTTSCEEE--EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 457999999997 5558899999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 87 -~l~v~~ 92 (94)
T 2e5h_A 87 -VIKASI 92 (94)
T ss_dssp -EEEEEE
T ss_pred -EEEEEe
Confidence 777764
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.6e-15 Score=119.85 Aligned_cols=80 Identities=29% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceE-EEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGL-WMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~-~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. ...+++|+++|++||.|.. + .++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 4 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 4 GSSGIFIGNLDP------EIDEKLLYDTFSAFGVILQ--TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHHHTTSCBSS--CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 367999999997 4458999999999999999 9 999998899999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 76 ~-~l~v~~a~ 84 (96)
T 1x5t_A 76 R-PITVSYAF 84 (96)
T ss_dssp E-ECEEEESC
T ss_pred E-EEEEEEec
Confidence 5 77777643
|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=118.93 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 25 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 25 GPMRLYVGSLHF------NITEDMLRGIFEPFGRIES--IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SCEEEEEECCCS------SCCHHHHHHHHTTTSCEEE--EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467999999997 4458899999999999999 99999998999999999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 97 -~l~V~~a 103 (108)
T 2jrs_A 97 -PMKVGHV 103 (108)
T ss_dssp -CCEEECS
T ss_pred -EEEEEEc
Confidence 7777654
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=120.11 Aligned_cols=80 Identities=21% Similarity=0.450 Sum_probs=72.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 12 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTY------RTSPDSLRRVFEKYGRVGD--VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCeEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 357999999997 4458999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~V~~a~ 91 (103)
T 2dnm_A 84 -ELRVQVAR 91 (103)
T ss_dssp -CCEEEECS
T ss_pred -EEEEEECC
Confidence 77777654
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=118.36 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=71.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSL------YTTERDLREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GGGCEEEESCCS------SCCHHHHHHHHHTTSCEEE--EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCeeE--EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4448899999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~v~~a 92 (95)
T 2cqc_A 86 -RIRVSGP 92 (95)
T ss_dssp -EEEEECC
T ss_pred -EEEEEec
Confidence 7777654
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=117.67 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++ |||..++++
T Consensus 9 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPH------NCGETELREYFKKFGVVTE--VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCS------SCCHHHHHHHHSSSSCEEE--EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 457999999997 4458899999999999999 9999999999999999999999999999998 999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 80 -~l~V~~a~ 87 (99)
T 2dgs_A 80 -KVEVKRAE 87 (99)
T ss_dssp -BCEEEECC
T ss_pred -EEEEEECC
Confidence 77777643
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=129.47 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC--eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG--VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g--~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-.++|||+|||. +..+++|+++|++|| .|.+ +.++.|+.+|++||||||+|.+.++|.+|++.|||..++
T Consensus 54 ~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~v~~--v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSW------WTTDQQLIQVIRSIGVYDVVE--LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCT------TCCHHHHHHHHHHTTCCCEEE--EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHCCccEEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 357999999997 555899999999999 9999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 126 Gr-~l~V~~a 134 (156)
T 3n9u_C 126 GE-KVDVRPA 134 (156)
T ss_dssp TE-ECEEEEC
T ss_pred Ce-EeEEEEc
Confidence 85 7887764
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=119.90 Aligned_cols=79 Identities=30% Similarity=0.388 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 22 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 22 EGWILFVTGVHE------EATEEDIHDKFAEYGEIKN--IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp TBEEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhccCCeEE--EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 467999999997 4448899999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 94 -~l~V~~a 100 (106)
T 1p27_B 94 -PISVDWC 100 (106)
T ss_dssp -BCEEEES
T ss_pred -EEEEEee
Confidence 7777653
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=119.44 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=73.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSP------EITTEDIKAAFAPFGRISD--ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TCEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4458999999999999999 99999988999999999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 86 -~l~V~~a~~ 94 (115)
T 2dgo_A 86 -QIRTNWATR 94 (115)
T ss_dssp -ECEEEESSC
T ss_pred -EEEEEEccC
Confidence 788777543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=152.59 Aligned_cols=289 Identities=11% Similarity=-0.023 Sum_probs=167.5
Q ss_pred EEcCCCcEEEEEecCc----eEEeec--ccC-cceeeeec-----CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 220 QWSPLGTYLATVHRQG----AAVWGG--ANT-FNRLMRYA-----HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 220 ~~Spdg~~lat~~~~~----i~iw~~--~~~-~~~~~~~~-----~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
..+|+|+++++...++ -.||-. .+. .+.+.... |. .+..++|||||++||.+.... +.....
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~-----G~~~~~ 148 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN-----AADEAV 148 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET-----TCSCCE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC-----CCceEE
Confidence 3458999999887543 345643 312 12222211 22 388999999999999654331 011168
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCe-------------EEEEEcCCcee
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM-------------ISVYETESFTL 352 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~-------------i~iwd~~~~~~ 352 (712)
|++||+.+|+.+......... ...++||| ||+.|++++ +.. |.+|++.++..
T Consensus 149 i~v~dl~tg~~~~~~~~~~~~-------------~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~ 214 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVDVIEGGK-------------YATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS 214 (695)
T ss_dssp EEEEETTTCCBCSSCCBSCCT-------------TCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred EEEEECCCCCCcCCcccCccc-------------ccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence 999999998865111111000 01589999 999998887 554 99999987653
Q ss_pred cccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 353 IDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 353 ~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
...... +...+..+.|||||++|++.... ......||+++.+..... .............| ++|. +++.+
T Consensus 215 ~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~---~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 215 KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR---GWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE---TTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred hceEEEecCCCCEEEEEEEECCCCCEEEEEEeC---CCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCc-EEEEE
Confidence 221111 22357889999999999874221 114568888876544322 11112222333445 6777 66665
Q ss_pred cccccccccccccEEEEEEecCCcce-eEEEecCC--CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNK--NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h--~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+... ....|+.++..+... ....+..| ...+.+++|+ ++..+++...++ ..+||.++....
T Consensus 289 ~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~----- 352 (695)
T 2bkl_A 289 DEGA-------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA---TSEVRVATLKGK----- 352 (695)
T ss_dssp CTTC-------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT---EEEEEEEETTCC-----
T ss_pred CCCC-------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCC-----
Confidence 5321 112455444322110 01222222 4567888888 666666666677 666766542111
Q ss_pred EEEEeC---CCceeEEEEccCCCeEEEEec-cCCCceEEEEECCccee
Q 005140 506 KLTTLK---GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELET 549 (712)
Q Consensus 506 ~~~~~~---~~~v~~l~~spdg~~l~~~~~-~~~dg~v~iwd~~~~~~ 549 (712)
....+. ...+..++++|+|+.+++... ....++|++||+.+++.
T Consensus 353 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 353 PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 233333 335678889999987775432 22368999999987654
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=121.47 Aligned_cols=80 Identities=25% Similarity=0.419 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 6 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNR------ETNEKMLKAVFGKHGPISE--VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp SCCEEEEECCTT------TCCHHHHHHHHHTSSCCSE--EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4558999999999999999 9999999 999999999999999999999999999999986
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 77 -~l~V~~a~~ 85 (116)
T 2fy1_A 77 -AIKVEQAKK 85 (116)
T ss_dssp -BCEEEECCC
T ss_pred -EEEEEECCC
Confidence 788876543
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=119.16 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=71.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+++++|||||+|.+.++|.+|++.|||..++++
T Consensus 12 ~~~l~v~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 82 (102)
T 1x5s_A 12 EGKLFVGGLSF------DTNEQSLEQVFSKYGQISE--VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR- 82 (102)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHHHHSCCCE--EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe-
Confidence 56999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 83 ~l~v~~a~ 90 (102)
T 1x5s_A 83 QIRVDQAG 90 (102)
T ss_dssp CCEEEEEE
T ss_pred EEEEEECC
Confidence 77777654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-12 Score=129.27 Aligned_cols=271 Identities=7% Similarity=0.039 Sum_probs=160.5
Q ss_pred eEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEeecccCcceeeeecCC-------
Q 005140 193 TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRLMRYAHP------- 254 (712)
Q Consensus 193 ~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~~~~~~~------- 254 (712)
++.+++. ..++.+..+.....+ .+++||||++|+.+.. ++ |.+||.. +.+.+.++...
T Consensus 48 ~v~v~D~-~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~-t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-TFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEEC-CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-CCcEEEEEECCCcccccc
Confidence 4556766 344444444433333 8999999999998862 33 7799998 77777665432
Q ss_pred --CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 255 --QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 255 --~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
....+.|||||++|++++... ...|.++| .+++.+.. +.... ++.+.| ++
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~--------~~~v~viD-~t~~~~~~~i~~~~-----------------~~~~~~-~~ 176 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAA--------GPAVGLVV-QGGSSDDQLLSSPT-----------------CYHIHP-GA 176 (373)
T ss_pred CCCccceEECCCCCEEEEEecCC--------CCeEEEEE-CCCCEEeEEcCCCc-----------------eEEEEe-CC
Confidence 256899999999999887420 05799999 99998887 65432 233344 44
Q ss_pred C--EEEEecCCeEEEEEcCCceeccccc---cccc--C-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 332 K--YFAKLGKNMISVYETESFTLIDKKS---LKVE--N-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 332 ~--~la~~~d~~i~iwd~~~~~~~~~~~---~~~~--~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
. +++.+.||.+.+++. +++.+.... .... . .....+.+++..+++ .+. ...++.++........
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~--~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW-----PVY--SGKILQADISAAGATN 248 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE-----EcC--CceEEEEeccCCcceE
Confidence 3 344444999999999 776552211 0011 1 122345566555444 111 2245555543221100
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
. .-|.+...... .... .......++++|++++++++..
T Consensus 249 ~--------------------------------------~~~~~~~~~~~--~~~~--~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 249 K--------------------------------------APIDALSGGRK--ADTW--RPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred e--------------------------------------eeeeecCCccc--ccce--ecCceEeEEECCCCCEEEEEec
Confidence 0 00000000000 0000 0223344678899888887654
Q ss_pred CC-------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC-eEEEEeccCCCceEEEEECCcceeeee
Q 005140 484 DS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 484 d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.+ ..+.|.++|+.+.. .+.++. ++...+++|+|||+ .++++..+ ++.|.+||..+++.+.+
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~~------vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVGQ------TSSQISLGHDVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCcccccCCCCeEEEEECCCCE------EEEEEECCCCcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEee
Confidence 21 12379999986654 455555 34579999999999 66665521 78999999999988766
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-12 Score=132.54 Aligned_cols=258 Identities=12% Similarity=0.100 Sum_probs=155.3
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCC--------------cCCCccEEEEEEccCCceeeeccCCC-cccccCCCCCcCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNP--------------RDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGTGGVAGV 319 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~--------------~~~~~~~I~iwd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 319 (712)
.+.+++++|+|+.+++...+..-.. .....+.|.+||..+|+.++.+.... ... .
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p--------~-- 94 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP--------H-- 94 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE--------E--
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc--------e--
Confidence 4777777777777666554410000 00011469999998899877654221 111 1
Q ss_pred CcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccc---------cccccCeeeEEECC-CCCeEEEEeecCCCCCC
Q 005140 320 SWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKK---------SLKVENVMDFSWSP-TDPIISLFVPELGGGNQ 387 (712)
Q Consensus 320 ~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~ 387 (712)
.+++++ +|+++++.. ++.|.+|+..... .+... ..+......++++| ++.++++ .+ ..
T Consensus 95 ---gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~-----d~-~~ 164 (329)
T 3fvz_A 95 ---GLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS-----DG-YC 164 (329)
T ss_dssp ---EEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE-----EC-SS
T ss_pred ---EEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE-----eC-CC
Confidence 589999 999887777 8999999976431 22211 12233578999999 6776665 21 12
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
..+|..| .++|..+......+. +.. ...++-....
T Consensus 165 ~~~I~~~-----------------------~~~g~~~~~~~~~g~------------------~~~----~~~~~~~~p~ 199 (329)
T 3fvz_A 165 NSRIVQF-----------------------SPSGKFVTQWGEESS------------------GSS----PRPGQFSVPH 199 (329)
T ss_dssp CCEEEEE-----------------------CTTSCEEEEECEECC------------------SSS----CCTTEESCEE
T ss_pred CCeEEEE-----------------------cCCCCEEEEeccCCC------------------CCC----CCCcccCCCc
Confidence 3344443 444544332211100 000 0001123467
Q ss_pred EEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeC----CCceeEEEEccCCCeEEEEec----cCCCce
Q 005140 468 AFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANALFWSPSGRFIVLAGL----KGFNGQ 538 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~~----~~~dg~ 538 (712)
.++++|++..|+++. .++ .|++|+..++. .+..+. +..+..++|+| |..++..+. +..+..
T Consensus 200 gia~d~~~g~l~v~d~~~~---~I~~~~~~~G~------~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~ 269 (329)
T 3fvz_A 200 SLALVPHLDQLCVADRENG---RIQCFKTDTKE------FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ 269 (329)
T ss_dssp EEEEETTTTEEEEEETTTT---EEEEEETTTCC------EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC
T ss_pred EEEEECCCCEEEEEECCCC---EEEEEECCCCc------EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE
Confidence 899999944444444 455 89999987544 444442 23567899999 433333221 002568
Q ss_pred EEEEECCcceeeeec-----cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 539 LEFYNVDELETMATA-----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 539 v~iwd~~~~~~~~~~-----~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|++|++.+++.+... +...+..++++|+|..+++... ++.|++|++.+.
T Consensus 270 v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~-----~~~I~~~~~~~~ 323 (329)
T 3fvz_A 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH-----TNTVWKFTLTEK 323 (329)
T ss_dssp EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESS-----SCCEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECC-----CCEEEEEeCCcc
Confidence 999999988887763 3456889999999966666666 899999998864
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=117.30 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=71.5
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeece------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDG------LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~------~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
....++|||+|||. +..+++|+++|++||.|.... +.++.|+.+|+++|||||+|.+.++|.+|++.|
T Consensus 10 ~~~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 10 HSDNNTIFVQGLGE------NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCCCSEEEEECCCS------SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCC------CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 33567999999997 445899999999999987532 789999989999999999999999999999999
Q ss_pred CCCccCCceEEEEEe
Q 005140 130 NGYKLDRAHIFAVNM 144 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~ 144 (712)
||..++++ .+.|..
T Consensus 84 ~g~~~~g~-~l~V~~ 97 (99)
T 2la6_A 84 DGKEFSGN-PIKVSF 97 (99)
T ss_dssp TTCBSSSS-BCEEEE
T ss_pred CCCEeCCc-EEEEEe
Confidence 99999985 777654
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-15 Score=120.68 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=72.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 11 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAE------EVDDKVLHAAFIPFGDITD--IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCSCEEEESCCS------SCCHHHHHHHHTTTSCCCC--EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHhhccCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 4448999999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 83 -~l~V~~a~ 90 (102)
T 2cqb_A 83 -TIRVNLAK 90 (102)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEeCC
Confidence 88887644
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=119.54 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=73.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC------C
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN------G 131 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~------~ 131 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|| |
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 14 EGKTVFIRNLSF------DSEEEALGEVLQQFGDLKY--VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 467999999997 4458999999999999999 9999999999999999999999999999999999 9
Q ss_pred CccCCceEEEEEeecc
Q 005140 132 YKLDRAHIFAVNMFDD 147 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~~ 147 (712)
..++++ .+.|.....
T Consensus 86 ~~~~g~-~l~v~~a~~ 100 (111)
T 1x4h_A 86 LKLDGR-QLKVDLAVT 100 (111)
T ss_dssp EESSSC-EEEEECCCC
T ss_pred cEEcCE-EEEEEECCC
Confidence 999885 888876543
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=119.45 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc---
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL--- 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~--- 134 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 12 DAIKLFIGQIPR------NLDEKDLKPLFEEFGKIYE--LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp TCEEEEEESCCT------TCCHHHHHHHHHHHSCCCE--EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 457999999997 4458899999999999999 99999999999999999999999999999999999887
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
.++ .+.|....
T Consensus 84 ~g~-~l~v~~a~ 94 (106)
T 2dgp_A 84 MNR-PIQVKPAD 94 (106)
T ss_dssp CSS-CCEEEECC
T ss_pred CCc-eEEEEECC
Confidence 554 77776654
|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=114.26 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=68.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++ +++..++++
T Consensus 10 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSW------DTSKKDLKDYFTKFGEVVD--CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCT------TCCHHHHHHHHTTTSCEEE--EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE
Confidence 457999999997 4458999999999999999 9999999999999999999999999999996 588888885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 81 -~i~v~~ 86 (87)
T 3s7r_A 81 -VIDPKK 86 (87)
T ss_dssp -EEEEEE
T ss_pred -EEEEEe
Confidence 776653
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=119.30 Aligned_cols=79 Identities=24% Similarity=0.342 Sum_probs=70.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeee-eceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIK-EDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~-~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. ...+++|+++|++||.|. . +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 8 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 8 MAASLWMGDLEP------YMDENFISRAFATMGETVMS--VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp SSSEEEECSCCT------TCCHHHHHHHHHHTTCCCCE--EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CccEEEEeCCCC------CCCHHHHHHHHHHhCCcceE--EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 467999999997 455899999999999999 9 9999999999999999999999999999999999999988
Q ss_pred ceE---EEEEe
Q 005140 137 AHI---FAVNM 144 (712)
Q Consensus 137 ~~~---l~v~~ 144 (712)
+.. ++|..
T Consensus 80 ~~~~~~l~v~~ 90 (99)
T 2div_A 80 ATPAKRFKLNY 90 (99)
T ss_dssp CSSCEECCEEE
T ss_pred CCcceeEEEee
Confidence 631 55554
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=121.18 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 24 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQ------EFGDQDLLQMFMPFGNVVS--AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCS------SCCHHHHHHHHGGGSCCSE--EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457999999997 4458999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 96 -~l~V~~a~ 103 (115)
T 2cpz_A 96 -RLKVQLKR 103 (115)
T ss_dssp -ECEEECCC
T ss_pred -EEEEEEcC
Confidence 88887643
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=117.78 Aligned_cols=79 Identities=20% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 16 ~~~~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 16 EKHKLFISGLPF------SCTKEELEEICKAHGTVKD--LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCSCEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 357899999997 4458899999999999999 9999999 999999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 87 -~l~v~~a~ 94 (100)
T 2do4_A 87 -IIKVAISN 94 (100)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEECC
Confidence 78877643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=9.4e-13 Score=134.43 Aligned_cols=300 Identities=10% Similarity=0.107 Sum_probs=180.2
Q ss_pred ccCCCCCceEEEEEC----CeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEee
Q 005140 176 LTDEKARDQFVIRSG----TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWG 240 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~ 240 (712)
+..|+++..|+...+ ++.+.+.+. ...+.+..+.-...+ .+++||||++|+.++. ++ |.+||
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445677777777664 556666666 445555555443444 3999999998877652 23 88999
Q ss_pred cccCcceeeeecCC---------CeeEEEecCCCCEEEEEcC--CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc
Q 005140 241 GANTFNRLMRYAHP---------QVKLIDFSPGEKYLVTYSS--HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 309 (712)
Q Consensus 241 ~~~~~~~~~~~~~~---------~v~~i~~Spdg~~l~t~s~--d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~ 309 (712)
.. +.+.+.++..+ ....+.|||||++|+++.. + +.|.++|+.+++.+.++......
T Consensus 116 ~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~----------~~VsVID~~t~~vv~tI~v~g~~-- 182 (386)
T 3sjl_D 116 PV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA----------PAVGVVDLEGKAFKRMLDVPDCY-- 182 (386)
T ss_dssp TT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS----------CEEEEEETTTTEEEEEEECCSEE--
T ss_pred CC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC----------CeEEEEECCCCcEEEEEECCCcc--
Confidence 99 88877776422 3678999999999988764 4 68999999999999888654211
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEE-ecCCeEEEEEcCC-ceecccccccc----cCe-eeEEEC-CCCCeEEEEeec
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAK-LGKNMISVYETES-FTLIDKKSLKV----ENV-MDFSWS-PTDPIISLFVPE 381 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~-~~d~~i~iwd~~~-~~~~~~~~~~~----~~v-~~~~~s-p~~~~la~~~~~ 381 (712)
..+.. ..+.+++ +.||.+.+.++.+ ++......... ..+ ....|. ++|+++.+
T Consensus 183 --------------~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v---- 243 (386)
T 3sjl_D 183 --------------HIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP---- 243 (386)
T ss_dssp --------------EEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEE----
T ss_pred --------------eeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEE----
Confidence 12222 2333333 3377777777764 44322111111 111 223553 56654443
Q ss_pred CCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 382 LGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
. .+ ..++.++..... .+....++........|.|.
T Consensus 244 -s-~~--g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~--------------------------------------- 280 (386)
T 3sjl_D 244 -T-YT--GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG--------------------------------------- 280 (386)
T ss_dssp -B-TT--SEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC---------------------------------------
T ss_pred -e-CC--CEEEEEECCCCcceeecceeccccccccccccCC---------------------------------------
Confidence 1 22 356666654332 11111111100000012221
Q ss_pred cCCCCceEEEEEeeCCCEEEEEEcC-------CCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC-eEEEE
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FIVLA 530 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~-~l~~~ 530 (712)
....++++|+++++++...+ .+.+.|.++|+.+.+ .+..+. ++.+..++++|||+ +|+++
T Consensus 281 -----g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k------v~~~i~vg~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 281 -----GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE------RLAKFEMGHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp -----SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------EEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred -----CcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe------EEEEEECCCCcceEEECCCCCeEEEEE
Confidence 22235667888887776531 122378899987655 455554 44688999999997 56664
Q ss_pred eccCCCceEEEEECCcceeeeeccc-cceeeEEECCC
Q 005140 531 GLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPT 566 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spd 566 (712)
.. . ++.|.++|..+++.+.+... ...+.+.+++|
T Consensus 350 n~-~-~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 350 ST-G-DKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp ET-T-TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred cC-C-CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 42 1 78999999999999887443 55567777776
|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-15 Score=113.72 Aligned_cols=73 Identities=16% Similarity=0.319 Sum_probs=66.2
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|++|++ +||..++++ .+
T Consensus 1 ~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~-~l 70 (75)
T 2mss_A 1 KIFVGGLSV------NTTVEDVKHYFEQFGKVDD--AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-MV 70 (75)
T ss_dssp CEEEECCCS------SCCHHHHHHHHHTTSCCSE--ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC-CC
T ss_pred CEEEecCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE-EE
Confidence 489999997 4458999999999999999 9999999999999999999999999999998 999999886 66
Q ss_pred EEE
Q 005140 141 AVN 143 (712)
Q Consensus 141 ~v~ 143 (712)
.|.
T Consensus 71 ~v~ 73 (75)
T 2mss_A 71 ECK 73 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-12 Score=128.18 Aligned_cols=285 Identities=9% Similarity=0.020 Sum_probs=176.2
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+.+++|+|++..++..+.++ +.+|... .... ..-+...+.+++|+|+|+.++++..+ +.|.+||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~----------~~i~~~d~ 73 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-PWLE-ISKKGLQLEGLNFDRQGQLFLLDVFE----------GNIFKINP 73 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-EEEE-EESSCCCEEEEEECTTSCEEEEETTT----------CEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCcccccc-eeEE-EeccCccccCcEECCCCCEEEEECCC----------CEEEEEeC
Confidence 3467789999998887776555 7788333 2111 11133458999999999977788777 88999998
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C----CeEEEEEcCCceecccc--cccccCeee
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K----NMISVYETESFTLIDKK--SLKVENVMD 365 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d----~~i~iwd~~~~~~~~~~--~~~~~~v~~ 365 (712)
.+++....+..+...+. .++|++ +|+++++.. + +.|.+|+..++...... ......+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~-------------~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 74 ETKEIKRPFVSHKANPA-------------AIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp TTCCEEEEEECSSSSEE-------------EEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred CCCcEEEEeeCCCCCcc-------------eEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 88876544322222221 689999 999887776 4 58999998866543111 112235889
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
++++|+|++++..... ...+....|+.++....+...... .......+.|+|+|++|+++.... ..+.+|
T Consensus 140 i~~d~~g~l~v~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~--------~~i~~~ 209 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRG-YSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTA--------NRLHRI 209 (333)
T ss_dssp EEECTTSCEEEEECCC-BTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGG--------TEEEEE
T ss_pred eEECCCCCEEEEeccc-cccCCCceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeCCC--------CeEEEE
Confidence 9999999877651100 001235678888865433221111 112234578999999887765421 125667
Q ss_pred EEecCCcceeE------EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCC----
Q 005140 446 RIKERDIPIEV------LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGK---- 513 (712)
Q Consensus 446 ~l~~~~~~~~~------~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~---- 513 (712)
++...+..... ..+.++ ..+..++++++|+.+++...++ .|.+|+.. +. .+..+ ...
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~---~v~~~d~~-g~------~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQG---RVLVFNKR-GY------PIGQILIPGRDEGH 278 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTT---EEEEECTT-SC------EEEEEECTTGGGTC
T ss_pred EecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCC---EEEEECCC-CC------EEEEEEcCCCcccc
Confidence 66533222111 122222 4678899999999887777667 89999873 22 23333 222
Q ss_pred --ceeEEEEccCCCeEEEEeccC---CCceEEEEECC
Q 005140 514 --QANALFWSPSGRFIVLAGLKG---FNGQLEFYNVD 545 (712)
Q Consensus 514 --~v~~l~~spdg~~l~~~~~~~---~dg~v~iwd~~ 545 (712)
.+.+++|+|+|+.|++++... ..+.|.-++..
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 478999999998887666511 12345555544
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=119.79 Aligned_cols=79 Identities=30% Similarity=0.420 Sum_probs=71.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+..|||..++++
T Consensus 25 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 25 EGWILFVTSIHE------EAQEDEIQEKFCDYGEIKN--IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp TBEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 467999999997 4448899999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 97 -~l~V~~a 103 (110)
T 1oo0_B 97 -TIQVDWC 103 (110)
T ss_dssp -ECEEEES
T ss_pred -EEEEEEc
Confidence 7777654
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-15 Score=116.88 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=66.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 4 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQP------GTTDQDLVKLCQPYGKIVS--TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCT------TCCHHHHHTTSTTTSCEEE--EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 357999999997 4458899999999999999 99999998999999999999999999999999999998875
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-14 Score=117.57 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..+.+.
T Consensus 14 ~~~~l~v~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNK------QQSEEDVLRLFQPFGVIDE--CTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 367999999997 4458899999999999999 9999998 899999999999999999999999999998873
Q ss_pred --eEEEEEeec
Q 005140 138 --HIFAVNMFD 146 (712)
Q Consensus 138 --~~l~v~~~~ 146 (712)
+.+.|....
T Consensus 85 ~~~~l~V~~a~ 95 (105)
T 2dnh_A 85 ASSSLVVKFAD 95 (105)
T ss_dssp CSSCCEEEESC
T ss_pred CCccEEEEECc
Confidence 477776643
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=115.41 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=70.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQK-SLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~-~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.++. ++|||||+|.+.++|.+|++.|||..++++
T Consensus 4 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 4 PTKVHIGRLTR------NVTKDHIMEIFSTYGKIKM--IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 57999999997 4558999999999999999 99999998776 999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 76 -~l~v~~a 82 (88)
T 4a8x_A 76 -EITATAV 82 (88)
T ss_dssp -ECEEEEE
T ss_pred -EEEEEEC
Confidence 7777654
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=115.15 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+ .+||..++++
T Consensus 6 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~- 75 (89)
T 3ucg_A 6 ARSIYVGNVDY------GATAEELEAHFHGCGSVNR--VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR- 75 (89)
T ss_dssp HTEEEEESCCT------TCCHHHHHHHHGGGCCEEE--EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc-
Confidence 46999999997 4458999999999999999 999999999999999999999999999999 9999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 76 ~l~V~~a 82 (89)
T 3ucg_A 76 QIKVIPK 82 (89)
T ss_dssp ECEEEET
T ss_pred EEEEEEc
Confidence 7777653
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=117.31 Aligned_cols=79 Identities=23% Similarity=0.451 Sum_probs=71.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE---TQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~---~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+. |++++|||||+|.+.++|.+|++.|||..++
T Consensus 5 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 5 SSGLFIKNLNF------STTEETLKGVFSKVGAIKS--CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 57999999997 4458999999999999999 99999986 6799999999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 77 g~-~l~V~~a~ 86 (98)
T 2cpf_A 77 GH-KLEVRISE 86 (98)
T ss_dssp TE-ECEEECSS
T ss_pred Ce-EEEEEEcc
Confidence 85 78777654
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=118.61 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 28 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDF------GVSDADIQELFAEFGTLKK--AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CSEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 467999999997 4458999999999999999 9999999 999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 99 -~l~V~~a 105 (107)
T 3ulh_A 99 -PMNIQLV 105 (107)
T ss_dssp -ECEEEEE
T ss_pred -EEEEEEe
Confidence 7777653
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=121.12 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. +++ +.|+..|+++|++||.|.+ |.++. +|++||||||+|.+.++|.+|++.|||..+.++
T Consensus 29 ~~~LfV~nL~~~~~e---~~L~~~L~~~F~~~G~I~~--v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 29 SQVVLITNINPEVPK---EKLQALLYALASSQGDILD--IVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CSEEEEESCCTTSCH---HHHHHHHHHHHHHHSCEEE--EEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHHhccCCCeEE--EEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 57999999995 443 4566677899999999998 88764 689999999999999999999999999999986
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 101 -~l~V~~a~ 108 (127)
T 2a3j_A 101 -PLVITFSE 108 (127)
T ss_dssp -CCEEEECC
T ss_pred -EEEEEEcc
Confidence 77777644
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-14 Score=117.21 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=72.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEecc-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVD-PETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d-~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~ 135 (712)
-.++|||+|||. ...+.+|+++|++||.|.. |.|+.| +.+|+++|||||+|.+.++|.+|++.| ||..+.
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 14 TTSKILVRNIPF------QANQREIRELFSTFGELKT--VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHHccCCeEE--EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 457999999997 4458899999999999999 999999 889999999999999999999999999 999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 86 g~-~l~v~~a~ 95 (107)
T 2cph_A 86 GR-RLVLEWAD 95 (107)
T ss_dssp SC-BCEEEECC
T ss_pred CC-EEEEEeCC
Confidence 85 77777644
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=115.98 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=69.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.++++|.+|++.|||..++++
T Consensus 15 ~~~~l~v~nlp~------~~~~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEA------RVREEILYELFLQAGPLTK--VTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp GGGEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 356999999997 4448899999999999999 9999999 599999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~V~~a 92 (95)
T 2ywk_A 86 -PINVSGP 92 (95)
T ss_dssp -ECEEECC
T ss_pred -EEEEEEc
Confidence 7777653
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=118.89 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeee--------eceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIK--------EDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
-.++|||+|||. ...+++|+++|++||.|. . +.|+.|+.+|+++|||||+|.+.++|.+|++.|
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~~~~~~~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 14 DNSAIYVQGLND------SVTLDDLADFFKQCGVVKMNKRTGQPM--IHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHHTTTSCBCBCSSSCCBS--EECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHhcCCEeEccccCccC--EEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 467999999997 445889999999999998 6 999999889999999999999999999999999
Q ss_pred CCCccCCceEEEEEeec
Q 005140 130 NGYKLDRAHIFAVNMFD 146 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~ 146 (712)
||..+.++ .+.|....
T Consensus 86 ~g~~~~g~-~l~V~~a~ 101 (113)
T 2cpe_A 86 DGKDFQGS-KLKVSLAR 101 (113)
T ss_dssp TTCEETTE-ECEEECSS
T ss_pred CCCccCCC-EEEEEECC
Confidence 99999985 78887654
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=118.07 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++.|||..++++
T Consensus 15 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr- 85 (95)
T 2ek1_A 15 PTVIKVQNMPF------TVSIDEILDFFYGYQVIPG--SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR- 85 (95)
T ss_dssp CEEEEEECCCT------TCCHHHHHHHTTTSCBCTT--CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCccc--eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc-
Confidence 46999999997 5558999999999999998 88999998999999999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 86 ~l~v~~a 92 (95)
T 2ek1_A 86 KVKLSGP 92 (95)
T ss_dssp ECEEECC
T ss_pred EEEEEec
Confidence 7777653
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=122.56 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.|.. |.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 45 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 45 PNCCLGVFGLSL------YTTERDLREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CSSCBCEETCTT------SCCHHHHHHHHTTTSCEEE--EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467999999997 4448899999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 117 -~l~V~~a 123 (129)
T 2kxn_B 117 -RIRVDFS 123 (129)
T ss_dssp -CCEESCC
T ss_pred -EEEEEEe
Confidence 6766653
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=119.24 Aligned_cols=79 Identities=28% Similarity=0.417 Sum_probs=71.6
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 8 ~~~l~V~nlp~------~~~~~~l~~~f~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~- 78 (104)
T 1p1t_A 8 LRSVFVGNIPY------EATEEQLKDIFSEVGPVVS--FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR- 78 (104)
T ss_dssp HSCEEEESCCT------TSCHHHHHHHHHTTSCCSE--EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS-
T ss_pred ccEEEEeCCCC------cCCHHHHHHHHHhcCCeeE--EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc-
Confidence 36899999997 4558999999999999999 99999998999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 79 ~l~v~~a~ 86 (104)
T 1p1t_A 79 ALRVDNAA 86 (104)
T ss_dssp CBEEEETT
T ss_pred EEEEEeCC
Confidence 77777644
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=121.53 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 39 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQ------EFTDTDLASTFLPFGNVIS--AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CSEEEEEECSCT------TCCHHHHHHHTTTSCEEEE--EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467999999997 4458999999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.++|..
T Consensus 111 -~l~V~~ 116 (118)
T 2khc_A 111 -RLKVQL 116 (118)
T ss_dssp -ECCEEE
T ss_pred -EEEEEe
Confidence 676654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-13 Score=150.61 Aligned_cols=256 Identities=11% Similarity=-0.043 Sum_probs=151.5
Q ss_pred CCCcccceEEEcCCCcEEEEEec-----Cc-eEEeecccCcceeeeecCCCe--eEEEecCCCCEEEEEcCCCCCC---C
Q 005140 211 RSYWTESFVQWSPLGTYLATVHR-----QG-AAVWGGANTFNRLMRYAHPQV--KLIDFSPGEKYLVTYSSHEPSN---P 279 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~-----~~-i~iw~~~~~~~~~~~~~~~~v--~~i~~Spdg~~l~t~s~d~~~~---~ 279 (712)
+|.+.+..++|||||++||++.. +. |++||+. +++.+.......+ ..++|||||+.|++++.+.... .
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 56678999999999999996542 23 7899999 6654411122233 7899999999999998763200 0
Q ss_pred cCCCccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CC----eEEEEEcCCc
Q 005140 280 RDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN----MISVYETESF 350 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~----~i~iwd~~~~ 350 (712)
.......|++|++.++. ++.....+.... + .+.||| ||++|+..+ ++ .|.+|+..++
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~------------~-~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF------------L-QSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE------------E-EEEECT-TSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEE------------E-EEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 00112469999998876 232222232222 1 589999 999988777 44 5666665544
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc--eeeeeee--eecceeEEECcCCCEEEE
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE--LRQKNLF--SVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~--~~~~~~~~~s~~g~~l~~ 426 (712)
... ....+...+....| |+|. +++... . .....+|+.+++.+... ....... ......+.|+ ++..+++
T Consensus 263 ~~~-~l~~~~~~~~~~~~-~~g~-l~~~s~-~--~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 263 DFR-LLVKGVGAKYEVHA-WKDR-FYVLTD-E--GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp SCE-EEEECSSCCEEEEE-ETTE-EEEEEC-T--TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE
T ss_pred ceE-EeecCCCceEEEEe-cCCc-EEEEEC-C--CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE
Confidence 322 22233445566666 6666 544211 1 22467888998865432 1111111 1112334566 4555555
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCEEEEEEcC-CCCCeEEEEEeeccc
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTAQ 499 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~~ 499 (712)
...++. ..||.++..+.... .+..+ .+.+..++++|+++.+++.... ....+|++||+.++.
T Consensus 336 ~~~dg~---------~~l~~~~~~g~~~~--~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 336 YLKDAT---------SEVRVATLKGKPVR--TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTE---------EEEEEEETTCCEEE--ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEECCE---------EEEEEEeCCCCeeE--EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 555544 57777764443322 23323 5678889999999887766542 111278899986643
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=113.40 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=66.9
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++.+| ..++++ .
T Consensus 1 ~~l~v~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~-~ 70 (77)
T 1uaw_A 1 CKMFIGGLSW------QTTQEGLREYFGQFGEVKE--CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK-T 70 (77)
T ss_dssp CCEEEESCCS------SCCSHHHHHHHTTTSCCCC--EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC-C
T ss_pred CEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE-E
Confidence 4799999996 4447889999999999999 9999999899999999999999999999999999 888885 6
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 71 l~v~~ 75 (77)
T 1uaw_A 71 IDPKV 75 (77)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 66653
|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=118.33 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~v~nLp~------~~t~~~l~~~F~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 14 GPTIIKVQNMPF------TVSIDEILDFFYGYQVIPG--SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp SSEEEEEESCCT------TCCHHHHHHHTTTSCCCTT--TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHcCCccc--eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 356999999997 5558999999999999988 88999988999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~V~~a 92 (98)
T 2cqp_A 86 -KVKLVLG 92 (98)
T ss_dssp -ECEEEES
T ss_pred -EEEEEEc
Confidence 7777764
|
| >2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-14 Score=114.64 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=65.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHH----HHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIR----KIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~----~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.++|||+|||. +..+++|+ ++|++||.|.+ +.|+.|+.+ ||||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~l~V~nL~~------~~~~~~l~~~l~~~F~~~G~v~~--v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 9 GADVQVSNIDY------RLSRKELQQLLQEAFARHGKVKS--VELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp CEEEEEESCCT------TSCHHHHHHHHHHHHHHHSCEEE--EEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHHhccccCcEEE--EEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46999999996 33355666 99999999999 999999855 89999999999999999999999999
Q ss_pred CCceEEEEEee
Q 005140 135 DRAHIFAVNMF 145 (712)
Q Consensus 135 ~~~~~l~v~~~ 145 (712)
+++ .++|...
T Consensus 78 ~gr-~l~V~~a 87 (96)
T 2dgx_A 78 GSK-KILVSLA 87 (96)
T ss_dssp TTE-EEEEEEC
T ss_pred CCe-EEEEEEc
Confidence 985 8888764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-12 Score=127.87 Aligned_cols=277 Identities=8% Similarity=0.007 Sum_probs=172.8
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
...|.++.|+|++..++..+.+ +.++.| .+.....+..+..... .++|++ +|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~-------------~~~~~~-~g~ 57 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISE----------SELQTI---TAEPWLEISKKGLQLE-------------GLNFDR-QGQ 57 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCG----------GGSCEE---ECEEEEEEESSCCCEE-------------EEEECT-TSC
T ss_pred ccccceeeecCCccceeEEeec----------ccCccc---ccceeEEEeccCcccc-------------CcEECC-CCC
Confidence 3457889999998888777666 677888 3444555544332221 689999 999
Q ss_pred EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC--CCeEEEEEecCCccceeee--ee
Q 005140 333 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN--QPARVSLVQIPSKEELRQK--NL 407 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~--~~ 407 (712)
++++.. ++.|.+|+..++............+.+++|+|+|++++. ...+ ....|+.|+.......... ..
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~-----~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC-----YLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEE-----ECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEE-----eCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 777766 889999999877654322123456899999999987765 2222 2256888887665432111 11
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSP 486 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~ 486 (712)
.......+.++|+|..+++...... ......||.+...+.....+. .+...+..++|+|+|++++++.. ++
T Consensus 133 ~~~~~~~i~~d~~g~l~v~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~- 204 (333)
T 2dg1_A 133 TAYCIDDMVFDSKGGFYFTDFRGYS-----TNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTAN- 204 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEECCCBT-----TBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGT-
T ss_pred cCCcccceEECCCCCEEEEeccccc-----cCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCC-
Confidence 1223445788999986665432110 001246777765433222221 12345788999999997776654 45
Q ss_pred CCeEEEEEeecc-cccCce--eEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec--ccc----
Q 005140 487 RPDISFYSMRTA-QHAGRV--SKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA--EHF---- 556 (712)
Q Consensus 487 ~~~v~i~d~~~~-~~~~~~--~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--~~~---- 556 (712)
.|.+|++.+. ...... .....+.+ ..+..++++++|+++++... ++.|.+||.+ ++.+... +..
T Consensus 205 --~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---~~~v~~~d~~-g~~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 205 --RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---QGRVLVFNKR-GYPIGQILIPGRDEGH 278 (333)
T ss_dssp --EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET---TTEEEEECTT-SCEEEEEECTTGGGTC
T ss_pred --eEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC---CCEEEEECCC-CCEEEEEEcCCCcccc
Confidence 8999998632 110000 01112222 25678999999997777655 7899999985 4444332 111
Q ss_pred --ceeeEEECCCCCEEEEEEc
Q 005140 557 --MATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 557 --~v~~~~~spdg~~l~t~s~ 575 (712)
.+.+++|+|||+.|+.++.
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEE
T ss_pred ccCcceEEECCCCCEEEEEeC
Confidence 5889999999988876665
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-14 Score=122.84 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=73.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..+.++
T Consensus 41 ~~~~l~V~nLp~------~~~~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPT------TVDEVQLRQLFERYGPIES--VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCST------TCCHHHHHHHHHHHSCEEE--EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467999999997 4458999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 113 -~l~v~~a~ 120 (139)
T 1u6f_A 113 -RLKVALAA 120 (139)
T ss_dssp -EEEEEESS
T ss_pred -EEEEEECC
Confidence 78887654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-12 Score=127.11 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=166.3
Q ss_pred ceEEeecccCcceeeeec-------C-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc
Q 005140 235 GAAVWGGANTFNRLMRYA-------H-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD 306 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~-------~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~ 306 (712)
+|.++|.. +++....+. . .....+.+. +++..++...+ +.|.+||..+++.+.++.....
T Consensus 18 ~l~~~d~~-t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~----------~~v~viD~~t~~~~~~i~~~~~ 85 (328)
T 3dsm_A 18 TLSYYDPA-TCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNS----------HVIFAIDINTFKEVGRITGFTS 85 (328)
T ss_dssp EEEEEETT-TTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGG----------TEEEEEETTTCCEEEEEECCSS
T ss_pred eEEEEECC-CCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCC----------CEEEEEECcccEEEEEcCCCCC
Confidence 38899998 666554431 1 126778774 34444555555 7899999999999888864433
Q ss_pred ccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeEEECCCCCeEEEEee
Q 005140 307 EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDFSWSPTDPIISLFVP 380 (712)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~la~~~~ 380 (712)
.. .+++++ +++.+++.. ++.|.+||..++++........ .....+++ ++..|.+
T Consensus 86 p~--------------~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv--- 145 (328)
T 3dsm_A 86 PR--------------YIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYV--- 145 (328)
T ss_dssp EE--------------EEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEE---
T ss_pred Cc--------------EEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEE---
Confidence 33 588989 887666663 8999999999887664332211 13445555 3333333
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
+.......|..++..+.+.+.. +..
T Consensus 146 --~~~~~~~~v~viD~~t~~~~~~----------------------------------------------------i~~- 170 (328)
T 3dsm_A 146 --NCWSYQNRILKIDTETDKVVDE----------------------------------------------------LTI- 170 (328)
T ss_dssp --EECTTCCEEEEEETTTTEEEEE----------------------------------------------------EEC-
T ss_pred --EcCCCCCEEEEEECCCCeEEEE----------------------------------------------------EEc-
Confidence 1111123444454433221110 111
Q ss_pred CCCCceEEEEEeeCCCEEEEEEcCCC-------CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEec
Q 005140 461 NKNDKIIAFAWEPKGHRFAVIHGDSP-------RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 461 ~h~~~v~~~~~sp~g~~l~~~~~d~~-------~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~ 532 (712)
......++++|+|++++++..+.. ...|.++|..++.. .....+. +...+.++|+|+|++|+++.
T Consensus 171 --g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v----~~~~~~~~g~~p~~la~~~d~~~lyv~~- 243 (328)
T 3dsm_A 171 --GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV----EKQFKFKLGDWPSEVQLNGTRDTLYWIN- 243 (328)
T ss_dssp --SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE----EEEEECCTTCCCEEEEECTTSCEEEEES-
T ss_pred --CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE----EEEEecCCCCCceeEEEecCCCEEEEEc-
Confidence 223356778888886666554300 12789999865431 1112232 33578999999999998874
Q ss_pred cCCCceEEEEECCcceeeee--cc--ccceeeEEECCCCCEEEEEE-----ccceeccccEEEEEecCceeeeecc-cce
Q 005140 533 KGFNGQLEFYNVDELETMAT--AE--HFMATDVEWDPTGRYVATAV-----TSVHEMENGFNIWSFNGKLLYRTLK-DHF 602 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~~~~~~--~~--~~~v~~~~~spdg~~l~t~s-----~~~~~~d~~v~iw~~~g~~~~~~~~-~~i 602 (712)
+.|.+||..+++.... .. ......++++|++..|..+. . ++.|.+|+..|+.+..... ...
T Consensus 244 ----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v~d~~g~~~~~i~~G~~P 314 (328)
T 3dsm_A 244 ----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYRYSPQGKLIDEFYVGIIP 314 (328)
T ss_dssp ----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEEECTTCCEEEEEEEEESE
T ss_pred ----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEEECCCCCEEEEEEeccCc
Confidence 3899999988776432 11 35678999999655555554 4 7899999999887776644 234
Q ss_pred eeeEEe
Q 005140 603 FQFLWR 608 (712)
Q Consensus 603 ~~~~w~ 608 (712)
.+++|-
T Consensus 315 ~~~~~~ 320 (328)
T 3dsm_A 315 GAFCWK 320 (328)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 555553
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-14 Score=117.65 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=67.0
Q ss_pred ccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 55 ESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP-ETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 55 ~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~-~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
.....++|||+|||. +..+++|+++|++|| |.+ +.|+.|+ .+|+++|||||+|.+.++|.+|+ .|||..
T Consensus 15 ~~~~~~~l~V~nLp~------~~t~~~l~~~F~~~G-i~~--v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~ 84 (100)
T 2j76_E 15 PKSPPYTAFLGNLPY------DVTEESIKEFFRGLN-ISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 84 (100)
T ss_dssp -----CEEEESCCSS------CCSSSHHHHHSCSSC-EEE--EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC
T ss_pred CCCCCcEEEEeCCCC------CCCHHHHHHHHHhcC-CeE--EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 344578999999997 444788999999999 999 9999998 69999999999999999999999 899999
Q ss_pred cCCceEEEEEee
Q 005140 134 LDRAHIFAVNMF 145 (712)
Q Consensus 134 ~~~~~~l~v~~~ 145 (712)
++++ .+.|...
T Consensus 85 ~~g~-~l~V~~a 95 (100)
T 2j76_E 85 LGNR-RIRVDVA 95 (100)
T ss_dssp BTTB-CCCCEEC
T ss_pred ECCe-EEEEEec
Confidence 9886 5655543
|
| >2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=122.57 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----c
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY----K 133 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~----~ 133 (712)
-.++|||+|||. +..+++|+++|++||.|...+|.|++|+.||++||||||+|.+. +|.+|+..|||. .
T Consensus 22 ~~~~lfV~nL~~------~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 22 ANDTIILRNLNP------HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCEEEECSCCT------TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 457999999997 44488999999999999444489999999999999999999999 999999999999 9
Q ss_pred cCCceEEEEEeecc
Q 005140 134 LDRAHIFAVNMFDD 147 (712)
Q Consensus 134 ~~~~~~l~v~~~~~ 147 (712)
++++ .+.|.....
T Consensus 95 ~~gr-~l~V~~a~~ 107 (131)
T 2m2b_A 95 IDGK-TINVEFAKG 107 (131)
T ss_dssp GGGC-CCCCEECCC
T ss_pred CCCE-EEEEEECCC
Confidence 9885 777765443
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=119.52 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|+ .|||..++++
T Consensus 24 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAA------RIRPRDLEDFFSAVGKVRD--VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp HHTEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCEeE--EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 357999999997 4458899999999999999 999999999999999999999999999999 9999999885
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 95 -~l~V~~a~~ 103 (114)
T 2cq4_A 95 -PIIVQASQA 103 (114)
T ss_dssp -EEEEEEHHH
T ss_pred -EEEEEecCC
Confidence 888876543
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=115.60 Aligned_cols=79 Identities=24% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~~~~~l~~~f~~~G~i~~--~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 14 LGSTVFVANLDY------KVGWKKLKEVFSMAGVVVR--ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCSCEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 467999999997 4458999999999999999 9999998 799999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 85 -~l~v~~a~ 92 (114)
T 2do0_A 85 -PMHVKMDE 92 (114)
T ss_dssp -ECEEEECS
T ss_pred -EEEEEEcc
Confidence 78877643
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-14 Score=115.29 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.| +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 14 QVVNLYVKNLDD------GIDDERLRKAFSPFGTITS--AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SCCCEEEECCCT------TCCHHHHHHTTTTTSCEEE--EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 457999999997 4458999999999999999 999998 899999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~V~~a~ 91 (103)
T 2d9p_A 84 -PLYVALAQ 91 (103)
T ss_dssp -BCEEEECS
T ss_pred -EEEEEEec
Confidence 77777644
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-14 Score=115.44 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=70.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++|| |.. |.|+.|+.+|+++|||||+|.+.++|.+|+ .|||..++++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~g-i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 14 PPYTAYVGNLPF------NTVQGDIDAIFKDLS-IRS--VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SCEEEEEESCCT------TCCHHHHHHHTTTSC-EEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCeEEEEeCCCC------CCCHHHHHHHHHhCC-ceE--EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 357999999997 445899999999997 999 999999999999999999999999999999 8999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~V~~a~ 91 (103)
T 2dng_A 84 -SLRVDIAE 91 (103)
T ss_dssp -ECEEEECC
T ss_pred -EEEEEEec
Confidence 77777643
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-14 Score=116.32 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET-QKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~-~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+++|+++|++|| |.. |.|+.|+.+ |+++|||||+|.+.++|.+|+ .|||..+++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G-i~~--v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 14 PPYTAFLGNLPY------DVTEESIKEFFRGLN-ISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp SCEEEEEESCCS------SCCHHHHHHHTTTSC-EEE--EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHHHCC-ceE--EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 457999999997 445899999999999 999 999999988 999999999999999999999 999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 84 ~-~l~V~~a~ 92 (104)
T 1wi8_A 84 K-RIRVDVAD 92 (104)
T ss_dssp E-ECEEEECC
T ss_pred c-EEEEEEcc
Confidence 5 77777643
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-14 Score=120.37 Aligned_cols=79 Identities=30% Similarity=0.388 Sum_probs=71.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 21 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 21 EGWILFVTGVHE------EATEEDIHDKFAEYGEIKN--IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp SSEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 467999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 93 -~l~v~~a 99 (126)
T 3ex7_B 93 -PISVDWC 99 (126)
T ss_dssp -BCEEEES
T ss_pred -EEEEEEe
Confidence 7777653
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-14 Score=114.23 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--YKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~~~~ 135 (712)
-+++|||+|||. +..+.+|+++|++||.|.+ +.|+.| ||||||+|++.++|.+|++.+++ ..++
T Consensus 15 ~~~~LfV~nLp~------~vte~dL~~lF~~fG~V~~--v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 15 PSRVIHIRKLPI------DVTEGEVISLGLPFGKVTN--LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCEEEECSCCT------TSCHHHHHHHHHHHCCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 357999999997 5559999999999999999 999975 69999999999999999998864 6788
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 81 Gr-~l~V~~A 89 (105)
T 1sjq_A 81 GQ-PIYIQFS 89 (105)
T ss_dssp TE-ECCBCCC
T ss_pred CE-EEEEEEc
Confidence 75 6666653
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=124.26 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=73.7
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+++++|||||+|.+.++|.+|++.|||..+++
T Consensus 37 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSF------YTTEEQIYELFSKSGDIKK--IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568999999997 4458999999999999999 9999999999999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 109 ~-~l~V~~a~ 117 (156)
T 1h2v_Z 109 R-IIRTDWDA 117 (156)
T ss_dssp E-ECEEEEES
T ss_pred e-EEEEEECC
Confidence 5 88887754
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-14 Score=117.39 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=69.0
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.+ |.+|+..|||..++++ .
T Consensus 2 ~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-~ 71 (90)
T 2ki2_A 2 RNIYVGNLVY------SATSEQVKELFSQFGKVFN--VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-T 71 (90)
T ss_dssp EEEEEEEECT------TSSHHHHTTTHHHHTCCSE--EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-S
T ss_pred cEEEECCCCC------CCCHHHHHHHHHhcCCEEE--EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe-E
Confidence 4799999997 4558999999999999999 999999999999999999999999 9999999999999985 6
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
+.|...
T Consensus 72 l~V~~a 77 (90)
T 2ki2_A 72 IRVTEA 77 (90)
T ss_dssp CSEEEC
T ss_pred EEEEEc
Confidence 766653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-11 Score=120.97 Aligned_cols=236 Identities=13% Similarity=0.137 Sum_probs=152.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe-cCCCCCE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW-GGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~dg~~ 333 (712)
.+.+++++|+|+++++...+ +.|.+||.. ++.+..+....... +....+. .+++ .+ ++.+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~----------~~i~~~d~~-g~~~~~~~~~~~~~--~~~~~p~-----~i~~~~~-~g~l 91 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNN----------HRIQIFDKE-GRFKFQFGECGKRD--SQLLYPN-----RVAVVRN-SGDI 91 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGG----------TEEEEECTT-SCEEEEECCBSSST--TCBSSEE-----EEEEETT-TTEE
T ss_pred CCceEEECCCCCEEEEECCC----------CEEEEECCC-CcEEEEecccCCCc--ccccCce-----EEEEEcC-CCeE
Confidence 48899999999988887777 889999975 77776664321000 0000011 5788 57 7877
Q ss_pred EEEec--CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 334 FAKLG--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 334 la~~~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
+++.. ++.|.+|+ .+++.+.... .....+.+++++|+|+++++ ...+ ..|..|
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-----~~~~--~~i~~~---------------- 147 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVV-----ECKV--MRVIIF---------------- 147 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEE-----ETTT--TEEEEE----------------
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEE-----ECCC--CEEEEE----------------
Confidence 77764 88999999 4455443321 12345788999999886654 2222 233333
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
.++|..+... ....+...+.+++++|+|+.+++...++ .|
T Consensus 148 -------~~~g~~~~~~------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i 187 (286)
T 1q7f_A 148 -------DQNGNVLHKF------------------------------GCSKHLEFPNGVVVNDKQEIFISDNRAH---CV 187 (286)
T ss_dssp -------CTTSCEEEEE------------------------------ECTTTCSSEEEEEECSSSEEEEEEGGGT---EE
T ss_pred -------cCCCCEEEEe------------------------------CCCCccCCcEEEEECCCCCEEEEECCCC---EE
Confidence 3333322111 0112234578899999998666655566 89
Q ss_pred EEEEeecccccCceeEEEEeCC----CceeEEEEccCCCeEEEEeccCCCc-eEEEEECCcceeeeec----cccceeeE
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKG----KQANALFWSPSGRFIVLAGLKGFNG-QLEFYNVDELETMATA----EHFMATDV 561 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~----~~v~~l~~spdg~~l~~~~~~~~dg-~v~iwd~~~~~~~~~~----~~~~v~~~ 561 (712)
.+|+... . .+..+.. .....++++|+|+++++... ++ .|.+|+.. ++.+... ....+.++
T Consensus 188 ~~~~~~g-~------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~---~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 188 KVFNYEG-Q------YLRQIGGEGITNYPIGVGINSNGEILIADNH---NNFNLTIFTQD-GQLISALESKVKHAQCFDV 256 (286)
T ss_dssp EEEETTC-C------EEEEESCTTTSCSEEEEEECTTCCEEEEECS---SSCEEEEECTT-SCEEEEEEESSCCSCEEEE
T ss_pred EEEcCCC-C------EEEEEccCCccCCCcEEEECCCCCEEEEeCC---CCEEEEEECCC-CCEEEEEcccCCCCcceeE
Confidence 9999732 1 3444432 35688999999988777765 55 99999976 4443331 12347789
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEec
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++|+|+.+++ +. ++.|++|++.
T Consensus 257 ~~~~~g~l~vs-~~-----~~~v~v~~~~ 279 (286)
T 1q7f_A 257 ALMDDGSVVLA-SK-----DYRLYIYRYV 279 (286)
T ss_dssp EEETTTEEEEE-ET-----TTEEEEEECS
T ss_pred EECCCCcEEEE-CC-----CCeEEEEEcc
Confidence 99999986666 56 8999999875
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=116.31 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-+++|||+|||. ...+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 33 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDF------GVSDADIQELFAEFGTLKK--AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCS------SCCHHHHHHHHHTTSCCSE--EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999997 4448899999999999999 9999999 99999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 104 ~-~l~V~~a~ 112 (124)
T 2kt5_A 104 R-PMDIQLVA 112 (124)
T ss_dssp C-EEEEEEEC
T ss_pred c-EEEEEEeC
Confidence 5 78887643
|
| >2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-14 Score=116.71 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhc-cCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc-cC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQ-IGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK-LD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~-~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~-~~ 135 (712)
-+++|||+|||. +..+++|+++|++ ||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||.. ++
T Consensus 8 ~~~~l~V~nLp~------~~t~~~l~~~F~~~~G~v~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 8 PEYSLFVGDLTP------DVDDGMLYEFFVKVYPSCRG--GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCCCEEEECCCT------TCCHHHHHHHHHHHCTTEEE--EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHhCCCeEE--EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 467999999997 4458899999999 999999 9999999 99999999999999999999999999999 88
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 79 g~-~l~v~~a 87 (104)
T 2dhg_A 79 SK-PVRLSVA 87 (104)
T ss_dssp SS-CCCCCBC
T ss_pred CE-eEEEEEc
Confidence 85 5655543
|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-14 Score=116.85 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=68.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.+ |..++++
T Consensus 24 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~--v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 24 SGCKMFIGGLSW------QTTQEGLREYFGQFGEVKE--CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp --CCEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHccCCeEE--EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 357999999997 4458999999999999999 999999999999999999999999999999976 4888885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 95 -~l~V~~a~ 102 (109)
T 2rs2_A 95 -TIDPKVAF 102 (109)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEEcc
Confidence 77777643
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-14 Score=116.17 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=67.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||. ++ +.|++|+ +|++||||||+|.+.++|++|++ +|+..++++
T Consensus 14 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~-~~--v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 14 TGHCVHMRGLPY------RATENDIYNFFSPLNP-MR--VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SSCEEEEESCCT------TCCHHHHHHSSCSCCC-SE--EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHcCc-eE--EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 357999999998 5559999999999995 47 9999999 99999999999999999999995 799999886
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 83 -~i~V~~~~ 90 (102)
T 1wez_A 83 -YVELFLNS 90 (102)
T ss_dssp -CCEEEEEC
T ss_pred -EEEEEECC
Confidence 66666543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-11 Score=139.19 Aligned_cols=289 Identities=11% Similarity=0.038 Sum_probs=168.4
Q ss_pred EcCCCcEEEEEecCc----eEEeeccc-----Cc-ceeee---e--cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 221 WSPLGTYLATVHRQG----AAVWGGAN-----TF-NRLMR---Y--AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 221 ~Spdg~~lat~~~~~----i~iw~~~~-----~~-~~~~~---~--~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.+|+|+++++...++ ..||-... .. +.+.. + .+. .+..++|||||++||+++.+. +...
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~ 188 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG-----GSDW 188 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET-----TCSE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC-----CCce
Confidence 359999999887543 34675431 11 22211 1 121 378999999999999887541 1111
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CC--------------eEEEEEcCC
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN--------------MISVYETES 349 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~--------------~i~iwd~~~ 349 (712)
..|++||+.+|+.+.... +.... ..++||| | +.|+.+. ++ .|.+|++.+
T Consensus 189 ~~i~v~dl~tg~~~~~~~-~~~~~-------------~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt 252 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADEL-KWVKF-------------SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT 252 (741)
T ss_dssp EEEEEEETTTCCEEEEEE-EEEES-------------CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTS
T ss_pred EEEEEEECCCCCCCCccC-CCcee-------------ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCC
Confidence 479999999998765321 11111 1479999 9 8888776 43 388898876
Q ss_pred ceeccccccc----ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeeeeeeecceeEEECcCCCE
Q 005140 350 FTLIDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 350 ~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
+......... ...+..+.|||||++|++..... .+....||+++.... ............... .++|+|+.
T Consensus 253 ~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~dg~~ 329 (741)
T 1yr2_A 253 PQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG--TDPVNTVHVARVTNGKIGPVTALIPDLKAQWD-FVDGVGDQ 329 (741)
T ss_dssp CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT--TCSCCEEEEEEEETTEECCCEEEECSSSSCEE-EEEEETTE
T ss_pred CchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc--CCCcceEEEEECCCCCCcccEEecCCCCceEE-EEeccCCE
Confidence 5422111111 12378899999999998854322 224567888887654 202221111112222 24589999
Q ss_pred EEEEEcccccccccccccEEEEEEecCCc-ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDI-PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG 502 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~ 502 (712)
|++.+.... ....||.++..+. ......++.+...+.+++|+ ++..+++...++ ..+||.++....
T Consensus 330 l~~~s~~~~-------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~-- 396 (741)
T 1yr2_A 330 LWFVSGDGA-------PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA---KSQVLAFDLDGK-- 396 (741)
T ss_dssp EEEEECTTC-------TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT---EEEEEEEETTSC--
T ss_pred EEEEECCCC-------CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCC--
Confidence 998877532 1134555443321 11112233445566677887 555556666666 566665542111
Q ss_pred ceeEEEEeC---CCceeEEEEccCCCeEEEEec-cCCCceEEEEECCccee
Q 005140 503 RVSKLTTLK---GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELET 549 (712)
Q Consensus 503 ~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~-~~~dg~v~iwd~~~~~~ 549 (712)
....+. ...+..+.++|+|+.|++... ....++|++||+.+++.
T Consensus 397 ---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 397 ---PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ---EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ---ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 333333 335788999999987664432 22368999999987663
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=110.64 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=63.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK--LD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~--~~ 135 (712)
-+++|||+|||. +..+++|+++|++||.|.+ +.|+. .||||||+|++.++|.+|++.|||.. +.
T Consensus 20 ps~~l~V~NLp~------~~te~~L~~lF~~fG~V~~--v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 20 ASPVVHIRGLID------GVVEADLVEALQEFGPISY--VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHhccCCEEE--EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 467999999997 5558999999999999999 98874 47999999999999999999999986 56
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|...+
T Consensus 86 Gr-~i~V~~S~ 95 (100)
T 3r27_A 86 GH-PAFVNYST 95 (100)
T ss_dssp TE-EEEEEECS
T ss_pred Cc-EEEEEecc
Confidence 75 77777643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-11 Score=124.99 Aligned_cols=296 Identities=11% Similarity=0.042 Sum_probs=185.7
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
....|+++.++...... ....+.|.++|..+++.+..+...... .+.+|| ||++++.+.
T Consensus 38 ~~~~pd~~~vyV~~~~~-----~~~~~~V~ViD~~t~~v~~~I~vG~~P---------------~va~sp-DG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAH-----FAAVTQQFVIDGEAGRVIGMIDGGFLP---------------NPVVAD-DGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGG-----GCSSEEEEEEETTTTEEEEEEEECSSC---------------EEEECT-TSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcc-----cCCCCEEEEEECCCCeEEEEEECCCCC---------------cEEECC-CCCEEEEEc
Confidence 55679999888776520 000168999999999999888654332 489999 999776553
Q ss_pred -----------CCeEEEEEcCCceecccccccc-------cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 339 -----------KNMISVYETESFTLIDKKSLKV-------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 339 -----------d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
++.|.+||..+++.+....... .....+.++|||+++.+ +.......|.+++..+.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV-----an~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF-----YQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE-----EECSSSCEEEEEETTTTE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE-----EEcCCCCeEEEEECCCCc
Confidence 5789999999988776543321 23567999999999887 222334678899999888
Q ss_pred ceeeeeeeee------cc-eeEEECcCCCEEEEEEcc-cccccccccccEEEEEEecCCcceeEEEecCCCCceE-EEEE
Q 005140 401 ELRQKNLFSV------SD-CKMYWQSSGDYLAVKVDR-YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII-AFAW 471 (712)
Q Consensus 401 ~~~~~~~~~~------~~-~~~~~s~~g~~l~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~-~~~~ 471 (712)
.+........ .. .-+..+++|+.+.+.... +. + + ...... +.....++. ..+|
T Consensus 172 vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~---------v-~-~~~~~~-------~~~~~~~~~~~~~~ 233 (386)
T 3sjl_D 172 FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT---------P-E-ITHTEV-------FHPEDEFLINHPAY 233 (386)
T ss_dssp EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC---------C-E-EEECCC-------CSCTTSCBCSCCEE
T ss_pred EEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCe---------E-E-Eeecce-------ecccccccccccee
Confidence 7665543211 10 112345566655554433 11 1 0 000000 000012222 2466
Q ss_pred e-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC------------CCceeEEEEccCCCeEEEEecc-----
Q 005140 472 E-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------------GKQANALFWSPSGRFIVLAGLK----- 533 (712)
Q Consensus 472 s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~~~~~~----- 533 (712)
. ++|++ ++.+.++ .|+++|+.+.... .+..+. ......++++|+++.++++...
T Consensus 234 ~~~dG~~-~~vs~~g---~V~v~d~~~~~~~----v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 234 SQKAGRL-VWPTYTG---KIHQIDLSSGDAK----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp ETTTTEE-EEEBTTS---EEEEEECTTSSCE----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred EcCCCcE-EEEeCCC---EEEEEECCCCcce----eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 5 56654 4455566 8999998654311 111111 1123457889999998887531
Q ss_pred --CCCceEEEEECCcceeeeeccc-cceeeEEECCCCC-EEEEEEccceeccccEEEEEec-Cceeeeec-ccceeeeEE
Q 005140 534 --GFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRTL-KDHFFQFLW 607 (712)
Q Consensus 534 --~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~-~~~i~~~~w 607 (712)
...+.|.++|+.+++.+..... ..+.+++++|||+ .|+++... ++.+.++|.. ++.+.... .+...++.+
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~----~~~VsViD~~t~k~~~~i~~~~~p~~l~~ 381 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG----DKTLYIHDAESGEELRSVNQLGHGPQVIT 381 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT----TTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC----CCeEEEEECCCCcEEEEecCCCCCceeEE
Confidence 0136899999999999887544 4677999999998 55554432 7899999986 56655553 367778888
Q ss_pred ecC
Q 005140 608 RPR 610 (712)
Q Consensus 608 ~p~ 610 (712)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 877
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.9e-14 Score=112.14 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=67.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.|.. +.++.+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 7 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~v~~--~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPF------DFTWKMLKDKFNECGHVLY--ADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SCCEEEECSCCT------TCCHHHHHHHHHTTSCEEE--EEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 5558999999999999999 999985 799999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 77 -~l~v~~ 82 (92)
T 2dgv_A 77 -EIDVRI 82 (92)
T ss_dssp -CCCCEE
T ss_pred -EEEEEE
Confidence 666654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=128.84 Aligned_cols=306 Identities=10% Similarity=0.027 Sum_probs=176.7
Q ss_pred CCCcEEEEEec------CceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 223 PLGTYLATVHR------QGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 223 pdg~~lat~~~------~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
|++++++.... +.|.+.|.. +.+.+.++....-..+.+||||++|+++.........+...+.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~-t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS-TGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT-TTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC-CCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 56776666554 247899999 88888888654422899999999988876310000000001689999999999
Q ss_pred eeeeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccc-------cCeee
Q 005140 297 VMRDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKV-------ENVMD 365 (712)
Q Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~-------~~v~~ 365 (712)
.++.+... ...... ...+. .+.++| ||++++.+. ++.|.++|+.+++.+....... +.-..
T Consensus 161 vv~~I~v~g~~r~~~--g~~P~-----~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~ 232 (426)
T 3c75_H 161 PIADIELPDAPRFLV--GTYQW-----MNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF 232 (426)
T ss_dssp EEEEEEETTCCCCCB--SCCGG-----GSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEEEEECCCcccccc--CCCcc-----eEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence 98887532 100000 00011 479999 999888765 5789999999988775443211 01112
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
++++++|+.+++ ....+.... ... ..+.... ......+.+.++|..+++....+. +.+.
T Consensus 233 v~~~~dG~~~~V-----~~~~~~v~~-~~~----~~~~v~~--~p~~~~~~~~~dg~~~~~~s~~g~---------V~Vi 291 (426)
T 3c75_H 233 YMNCRDGSLARV-----DFADGETKV-TNT----EVFHTED--ELLINHPAFSLRSGRLVWPTYTGK---------IFQA 291 (426)
T ss_dssp EEEETTSSEEEE-----ECCTTCCEE-EEC----CCCSCTT--SCBCSCCEECTTTCEEEEEBTTSE---------EEEE
T ss_pred EEEcCCCCEEEE-----ECCCCcEEE-Eee----eeeccCC--CceeeEeeecCCCCEEEEEeCCCc---------EEEE
Confidence 455566665554 111111111 000 0000000 000112356888888777654432 4444
Q ss_pred EEecCCcce-eEEEecC--------CCCceEEEEEeeCCCEEEEEEcCC-------CCCeEEEEEeecccccCceeEEEE
Q 005140 446 RIKERDIPI-EVLELDN--------KNDKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 446 ~l~~~~~~~-~~~~l~~--------h~~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
++......+ ....+.. .......++++|+++++++...++ +.+.|.++|+.+.+ .+.+
T Consensus 292 D~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k------vv~~ 365 (426)
T 3c75_H 292 DLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE------RINK 365 (426)
T ss_dssp EECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------EEEE
T ss_pred eccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe------EEEE
Confidence 443221110 0111100 011222368999999888775321 12379999987655 5555
Q ss_pred eC-CCceeEEEEccCCC-eEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCC
Q 005140 510 LK-GKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPT 566 (712)
Q Consensus 510 ~~-~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spd 566 (712)
+. +.....+.|+|||+ +++++... ++.|.++|..+++.+.+. ..+.-..+..+||
T Consensus 366 I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 366 IELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp EEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred EECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence 55 33578999999999 77777631 799999999999998774 4444444666664
|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-14 Score=121.04 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=70.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe---eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV---IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~---v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-.++|||+|||. +..+++|+++|++||. |.. |.|++|+. |+++|||||+|.+.++|++|++ +||..+
T Consensus 43 ~~~~lfVgnLp~------~~te~dL~~~F~~~G~v~~v~~--v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPW------SCSVEDVQNFLSDCTIHDGAAG--VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCT------TCCHHHHHHHTTTCCCSSSSTT--EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCcCceeE--EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 457999999998 5559999999999999 788 99999995 9999999999999999999999 999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 113 ~gr-~i~V~~a~ 123 (136)
T 2hgl_A 113 GHR-YIEVFKSH 123 (136)
T ss_dssp SSS-EEEEEECC
T ss_pred CCE-EEEEEECC
Confidence 986 78877643
|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-14 Score=117.86 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=69.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHH---HHhhccCeeeeceEEEeccCCCC---CcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIR---KIYSQIGVIKEDGLWMPVDPETQ---KSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~---~~f~~~g~v~~~~~~~~~d~~~~---~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
-.++|||+|||. +..+++|+ ++|++||.|.+ +.|+.|+.++ +++|||||+|.+.++|.+|++.|||
T Consensus 14 ~~~~l~V~nLp~------~~~~~~l~~~~~~F~~~G~i~~--v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 14 QKNLVFVVGLSQ------RLADPEVLKRPEYFGKFGKIHK--VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp CSSCEEEEEECT------TTCCHHHHHSTTTTTTTSCEEE--EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHhhccCCEEE--EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence 357999999997 44477788 99999999999 9999998755 5569999999999999999999999
Q ss_pred CccCCceEEEEEeec
Q 005140 132 YKLDRAHIFAVNMFD 146 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~ 146 (712)
..++++ .+.|....
T Consensus 86 ~~~~gr-~l~V~~a~ 99 (111)
T 2cpi_A 86 VVVDGR-TLKASLGT 99 (111)
T ss_dssp EEETTE-EEEEESCC
T ss_pred CEECCE-EEEEEecc
Confidence 999985 88887643
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=110.94 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=64.8
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++. ++..++++ .+
T Consensus 1 ~l~v~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~-~l 70 (75)
T 1iqt_A 1 KIFVGGLSP------DTPEEKIREYFGGFGEVES--IELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS-KC 70 (75)
T ss_dssp CEEESCCCS------SCCHHHHHHHHHHHSCCSE--ECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB-CC
T ss_pred CEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE-EE
Confidence 489999997 4458999999999999999 99999999999999999999999999999995 88888885 55
Q ss_pred EEE
Q 005140 141 AVN 143 (712)
Q Consensus 141 ~v~ 143 (712)
.|.
T Consensus 71 ~v~ 73 (75)
T 1iqt_A 71 EIK 73 (75)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=117.06 Aligned_cols=79 Identities=29% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+++++|||||+|.+.++|.+|++.+|+ .++++
T Consensus 16 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 16 TFTKIFVGGLPY------HTTDASLRKYFEGFGDIEE--AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp SSSEEEEECCCS------SCCHHHHHHHHHTTSCEEE--EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCeeE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 357999999997 4458999999999999999 99999999999999999999999999999999998 78874
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 87 -~l~V~~a~ 94 (116)
T 2cqd_A 87 -KANVNLAY 94 (116)
T ss_dssp -ECEEEEST
T ss_pred -EEEEEEcc
Confidence 77777643
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=121.93 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 62 ~~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAE------EVDDKVLHAAFIPFGDITD--IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCCEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCcEEEEEeCCC------CCCHHHHHHHHHhcCCEEE--EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467999999997 4448899999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 134 -~l~v~~ 139 (140)
T 2ku7_A 134 -TIRVNL 139 (140)
T ss_dssp -EEEEEC
T ss_pred -EEEEEe
Confidence 777653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-11 Score=121.59 Aligned_cols=237 Identities=11% Similarity=0.116 Sum_probs=150.4
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecC--------CCeeEEEe-cCCCCEEEEEcC-CCCCC
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH--------PQVKLIDF-SPGEKYLVTYSS-HEPSN 278 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~--------~~v~~i~~-Spdg~~l~t~s~-d~~~~ 278 (712)
.++.....+++++|+|+++++...++ |.+|+.. +..+..+.. ..+..+++ .++|+.+++... +
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~---- 99 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT---- 99 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG----
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC----
Confidence 34556678899999999888877666 8899987 333333321 24889999 577877766643 5
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+.|.+|| .+++.+..+....... + ..+++++ +|+++++.. ++.|.+|+.. ++.+....
T Consensus 100 ------~~i~~~d-~~g~~~~~~~~~~~~~-------~-----~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~ 158 (286)
T 1q7f_A 100 ------HQIQIYN-QYGQFVRKFGATILQH-------P-----RGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFG 158 (286)
T ss_dssp ------CEEEEEC-TTSCEEEEECTTTCSC-------E-----EEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred ------CEEEEEC-CCCcEEEEecCccCCC-------c-----eEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeC
Confidence 6899999 6888777664322110 0 1588999 999887766 8899999965 33332221
Q ss_pred --ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 358 --LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 358 --~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.+...+..++++|+|+++++ ... ...|..|+ ++|..+...
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~-----~~~--~~~i~~~~-----------------------~~g~~~~~~-------- 200 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFIS-----DNR--AHCVKVFN-----------------------YEGQYLRQI-------- 200 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEE-----EGG--GTEEEEEE-----------------------TTCCEEEEE--------
T ss_pred CCCccCCcEEEEECCCCCEEEE-----ECC--CCEEEEEc-----------------------CCCCEEEEE--------
Confidence 22345788888888875554 111 22333332 233221110
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---- 511 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---- 511 (712)
...++...+..++++|+|+.+++...++ ..|.+|+... . .+..+.
T Consensus 201 ----------------------~~~g~~~~p~~i~~d~~G~l~v~~~~~~--~~i~~~~~~g-~------~~~~~~~~~~ 249 (286)
T 1q7f_A 201 ----------------------GGEGITNYPIGVGINSNGEILIADNHNN--FNLTIFTQDG-Q------LISALESKVK 249 (286)
T ss_dssp ----------------------SCTTTSCSEEEEEECTTCCEEEEECSSS--CEEEEECTTS-C------EEEEEEESSC
T ss_pred ----------------------ccCCccCCCcEEEECCCCCEEEEeCCCC--EEEEEECCCC-C------EEEEEcccCC
Confidence 0011234677899999998777765542 1799998532 2 222222
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
...+.+++++|+|+++++ +. ++.|.+|++..
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~---~~~v~v~~~~~ 280 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SK---DYRLYIYRYVQ 280 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ET---TTEEEEEECSC
T ss_pred CCcceeEEECCCCcEEEE-CC---CCeEEEEEccc
Confidence 123678999999986665 55 89999999864
|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-14 Score=116.38 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=70.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.++.|+.+|+++|||||+|.+.++|.+|++. ||..++++
T Consensus 15 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 15 EIGKLFVGGLDW------STTQETLRSYFSQYGEVVD--CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp SSSEECCBSCCT------TCCHHHHHHHHHTTSCEEE--EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 357999999997 4458999999999999999 99999998999999999999999999999999 99999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~V~~a 92 (105)
T 2dh8_A 86 -NIDPKPC 92 (105)
T ss_dssp -EEBCCCS
T ss_pred -EEEEEEc
Confidence 6766553
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-11 Score=121.52 Aligned_cols=245 Identities=7% Similarity=-0.029 Sum_probs=146.2
Q ss_pred cCCCcccceEEEcCCCc-EEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 210 KRSYWTESFVQWSPLGT-YLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
..+.....+++|+|+|+ +++++..++ |.+|+.. +.......+...+.+++|+|+|+.+++...+ +.|
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~----------~~i 92 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-GQLSPEMHPSHHQNGHCLNKQGHLIACSHGL----------RRL 92 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-SCEEEEESSCSSEEEEEECTTCCEEEEETTT----------TEE
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-CCeEEEECCCCCcceeeECCCCcEEEEecCC----------CeE
Confidence 33444556899999998 666666555 8899998 4422222233458999999999988887776 789
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe----c--------------CCeEEEEEcCC
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL----G--------------KNMISVYETES 349 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~----~--------------d~~i~iwd~~~ 349 (712)
.+||..+|+............ ... ...++++| +|+++++. . .+.|..++..
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~----~~~-----~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKK----LNS-----PNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEECSTTCCEEEEECEETTEE----CCC-----CCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEcCCCCcEEEEeeccCCCC----CCC-----CCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 999988887544332211110 000 11589999 99988863 2 2345555443
Q ss_pred ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 350 FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
+... ...........++|+|+++.|++ . .....|+.|+... +|....
T Consensus 162 g~~~-~~~~~~~~~~gi~~s~dg~~lv~-----~--~~~~~i~~~~~~~---------------------~g~~~~---- 208 (296)
T 3e5z_A 162 GTLS-APIRDRVKPNGLAFLPSGNLLVS-----D--TGDNATHRYCLNA---------------------RGETEY---- 208 (296)
T ss_dssp SCEE-EEECCCSSEEEEEECTTSCEEEE-----E--TTTTEEEEEEECS---------------------SSCEEE----
T ss_pred CCEE-EeecCCCCCccEEECCCCCEEEE-----e--CCCCeEEEEEECC---------------------CCcCcC----
Confidence 3221 12223344678888888887743 2 2223455444321 111000
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
...++ ..+...+.+++++++|+.+++. ++ .|.+|+.. +. .+..
T Consensus 209 -----------~~~~~--------------~~~~~~p~~i~~d~~G~l~v~~--~~---~v~~~~~~-g~------~~~~ 251 (296)
T 3e5z_A 209 -----------QGVHF--------------TVEPGKTDGLRVDAGGLIWASA--GD---GVHVLTPD-GD------ELGR 251 (296)
T ss_dssp -----------EEEEE--------------CCSSSCCCSEEEBTTSCEEEEE--TT---EEEEECTT-SC------EEEE
T ss_pred -----------CCeEe--------------eCCCCCCCeEEECCCCCEEEEc--CC---eEEEECCC-CC------EEEE
Confidence 00011 1123445678999999866665 45 79999975 22 2333
Q ss_pred e--CCCceeEEEE-ccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 510 L--KGKQANALFW-SPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 510 ~--~~~~v~~l~~-spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+ +.. +++++| +|+++.|++++. +.|.-++..+.++..
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLEH 291 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEET----TEEEEEECSCCBCCC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcC----CeEEEEEcccccccc
Confidence 3 333 888999 689999998874 456666776555443
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.9e-14 Score=118.21 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=70.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCee-eeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVI-KEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v-~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++|||+|||. +..+++|+++|++||.| .. |.|+.|+ +|+++|||||+|.+.++|.+|++. ||..++++
T Consensus 15 ~~~l~V~nLp~------~~t~~~l~~~F~~~g~v~~~--v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr 84 (114)
T 2cpy_A 15 KVCAHITNIPF------SITKMDVLQFLEGIPVDENA--VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGR 84 (114)
T ss_dssp CCEEEEESCCT------TSCHHHHHHHTTTSCCCSTT--EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE
T ss_pred ccEEEEeCcCC------cCCHHHHHHHHHhCCCcCCe--EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCe
Confidence 57999999997 55589999999999999 88 9999999 999999999999999999999987 99999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 85 -~i~v~~a~~ 93 (114)
T 2cpy_A 85 -EAFVHVVTL 93 (114)
T ss_dssp -EEEEEEECH
T ss_pred -EEEEEECCH
Confidence 778776554
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-14 Score=116.20 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=70.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCe-eeeceEEEe-ccCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCcc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV-IKEDGLWMP-VDPETQKSLGYCFIEYNTPQEAELAKEKTN--GYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~-v~~~~~~~~-~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~--~~~~ 134 (712)
.++|||+|||. +..+++|+++|++||. |.. +.++ .|+.+|+++|||||+|.+.++|.+|++.|| +..+
T Consensus 8 ~~~l~V~nLp~------~~t~~~l~~~f~~~G~~v~~--v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 8 NCRLFIGGIPK------MKKREEILEEIAKVTEGVLD--VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp SEEEEEECCCT------TSCHHHHHHHHHHHSTTEEE--EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred CCEEEEeCCCC------cCCHHHHHHHHHHhcCCceE--EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 56999999997 5558999999999998 999 9999 899899999999999999999999999996 5888
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 80 ~g~-~l~V~~a~ 90 (109)
T 2dis_A 80 WGH-QIAVDWAE 90 (109)
T ss_dssp TTB-CCEEEESC
T ss_pred cCC-eEEEEEcC
Confidence 885 77777654
|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=111.92 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=68.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+.+|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++ ++..++++
T Consensus 14 ~~~~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPW------KTTEQDLKEYFSTFGEVLM--VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCEEEESCCS------SCCHHHHHHHHGGGSCEEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCEEEEEcCCC------cCCHHHHHHHHHhcCCeEE--EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 356899999997 4458899999999999999 9999999899999999999999999999999 46777774
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 84 -~l~v~~a~~ 92 (103)
T 2cqg_A 84 -WCDCKLPNS 92 (103)
T ss_dssp -EEEEECCCT
T ss_pred -EEEEEecCC
Confidence 777776543
|
| >2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=110.97 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET-QKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~-~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|+|.||....+ =.+-++.+|++.|++||.|.+ +.++.|+.+ ++++|||||+|.++++|.+|++.|||..+++
T Consensus 7 ~s~~l~l~Nm~~~~~-l~dd~~~dl~~~f~~~G~V~~--v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGE-VDEDLEVETKEECEKYGKVGK--CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp CCSEEEEESSSCSCC-C---CHHHHHHHGGGGSCEEE--EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEEcCCChHH-hhHHHHHHHHHHHHhcCCEEE--EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467999999983211 113478999999999999999 999999754 7899999999999999999999999999998
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 84 r-~i~v~~a~~ 93 (105)
T 2pe8_A 84 R-VVKACFYNL 93 (105)
T ss_dssp E-ECEEEECCH
T ss_pred c-EEEEEEcCH
Confidence 6 888877643
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=111.98 Aligned_cols=79 Identities=28% Similarity=0.338 Sum_probs=69.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+. .++|||||+|.+.++|.+|++.|||..+.++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSR------DVTEVLILQLFSQIGPCKS--CKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHHHHSCEEE--EEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCc------cCCHHHHHHHHHhcCCEeE--EEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 457999999997 4458999999999999999 99999963 3799999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 84 -~l~V~~a~~ 92 (103)
T 2cqi_A 84 -EVKVNWATT 92 (103)
T ss_dssp -EEEEEECCC
T ss_pred -eEEEEECCC
Confidence 888877543
|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=116.80 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++. ||..++++
T Consensus 26 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSF------ETTEESLRNYYEQWGKLTD--CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTT------CCCHHHHHHHHTSSCCCSE--EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 357999999997 4448899999999999999 99999998999999999999999999999998 99999885
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 97 -~l~V~~a~~ 105 (116)
T 1x4b_A 97 -VVEPKRAVA 105 (116)
T ss_dssp -EEEEECCSS
T ss_pred -EEEEEECCC
Confidence 888876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-10 Score=118.84 Aligned_cols=284 Identities=10% Similarity=-0.030 Sum_probs=170.2
Q ss_pred EEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 259 IDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 259 i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
...+|+++++.+... .. . ...+|.+||..+++.+..+...... .+.+|| ||++++.+
T Consensus 26 ~~~~~~~~~~yv~~~~~~-~-----~~~~v~v~D~~t~~~~~~i~~g~~p---------------~i~~sp-Dg~~lyv~ 83 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHH-S-----AIIQQWVLDAGSGSILGHVNGGFLP---------------NPVAAH-SGSEFALA 83 (373)
T ss_pred ccCCCCCCEEEEeCCccc-C-----CccEEEEEECCCCeEEEEecCCCCC---------------CeEECC-CCCEEEEE
Confidence 345688888877764 20 0 0007899999999988777654322 489999 99988877
Q ss_pred c-----------CCeEEEEEcCCceeccccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 338 G-----------KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 338 ~-----------d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
. ++.|.+||..+++.+...... ......+.|+|||++|++ +.......|++++ .+.
T Consensus 84 n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v-----~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF-----FQFAAGPAVGLVV-QGG 157 (373)
T ss_pred eccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEE-----EecCCCCeEEEEE-CCC
Confidence 4 578999999887766443221 123458999999999988 3222245688888 777
Q ss_pred cceee-eeeeeecceeEEECcCCCEEE-EEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCc-eEEEEEee
Q 005140 400 EELRQ-KNLFSVSDCKMYWQSSGDYLA-VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDK-IIAFAWEP 473 (712)
Q Consensus 400 ~~~~~-~~~~~~~~~~~~~s~~g~~l~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~-v~~~~~sp 473 (712)
+.+.. ..... + +...|++...+ +...++. +.+++. . +....... ......+ .....+.+
T Consensus 158 ~~~~~~i~~~~---~-~~~~~~~~~~~~~~~~dg~---------~~~vd~-~-g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 158 SSDDQLLSSPT---C-YHIHPGAPSTFYLLCAQGG---------LAKTDH-A-GGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred CEEeEEcCCCc---e-EEEEeCCCceEEEEcCCCC---------EEEEEC-C-CcEEEEEeccccccCCcceeecceeEe
Confidence 66544 33211 1 22334443222 2222222 233333 1 11110010 0001112 23356777
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC------------CCceeEEEEccCCCeEEEEeccC-------
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------------GKQANALFWSPSGRFIVLAGLKG------- 534 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~~~~~~~------- 534 (712)
++..+++.+..+ .+.+.|+.+.... .+..+. ......++++|+|+.++++....
T Consensus 223 ~~~~~~~~~~~~---~v~vid~~~~~~~----v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~ 295 (373)
T 2mad_H 223 KSGRIVWPVYSG---KILQADISAAGAT----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA 295 (373)
T ss_pred cCCEEEEEcCCc---eEEEEeccCCcce----EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccC
Confidence 777666666555 7888888543211 112111 11233478999999888865310
Q ss_pred CCceEEEEECCcceeeeeccc-cceeeEEECCCCC-EEEEEEccceeccccEEEEEecC-ceeee
Q 005140 535 FNGQLEFYNVDELETMATAEH-FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNG-KLLYR 596 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g-~~~~~ 596 (712)
..+.|.++|..+++.+.+... ....+++|+|||+ .++++... ++.|.+||... +.+..
T Consensus 296 ~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~----~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 296 AAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG----TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC----CCeEEEEECCCCCEEee
Confidence 146899999999998877544 3588999999999 56665522 79999999874 44444
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-14 Score=121.25 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=72.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 46 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~--v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTY------RTSPDTLRRVFEKYGRVGD--VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCS------SCHHHHHHHHHGGGSCCSE--EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467999999998 5569999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 118 -~l~V~~a 124 (135)
T 2lea_A 118 -ELRVQMA 124 (135)
T ss_dssp -CCEEEEC
T ss_pred -EEEEEEC
Confidence 7777764
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=109.12 Aligned_cols=77 Identities=12% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++| .|.. +.|+.| .+|+++|||||+|.+.++|.+|++ +||..++++
T Consensus 9 ~~~~l~v~nLp~------~~t~~~l~~~F~~~-~i~~--v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 9 TCHTVKLRGAPF------NVTEKNVMEFLAPL-KPVA--IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCEEEEECCCS------SCCHHHHHHHHTTS-CCSE--EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CccEEEEECCCC------CCCHHHHHHHHhhC-CceE--EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 457999999997 44589999999999 8999 999999 599999999999999999999999 999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 78 -~i~v~~a~ 85 (91)
T 2dgw_A 78 -YIEVFREK 85 (91)
T ss_dssp -EEEEEEES
T ss_pred -EEEEEECC
Confidence 78877654
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=116.85 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe---eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV---IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~---v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-.++|||+|||. +..+++|+++|++||. |.. |.|+.|+. |+++|||||+|.+.++|++|++ +||..+
T Consensus 16 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~~~~v~~--v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPW------SCSIEDVQNFLSDCTIHDGVAG--VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHTTTSCBTTGGGG--EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHcCCccCcee--EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 457999999998 5558999999999999 888 99999995 9999999999999999999999 999999
Q ss_pred CCceEEEEEeecc
Q 005140 135 DRAHIFAVNMFDD 147 (712)
Q Consensus 135 ~~~~~l~v~~~~~ 147 (712)
+++ .+.|.....
T Consensus 86 ~gr-~i~V~~a~~ 97 (118)
T 2db1_A 86 GHR-YIEVFKSHR 97 (118)
T ss_dssp TTE-EEEEEEECH
T ss_pred CCe-EEEEEECCH
Confidence 986 777776543
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=118.89 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+ .|||..++++
T Consensus 36 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~- 105 (124)
T 2jwn_A 36 KRSVYVGNVDY------GSTAQDLEAHFSSCGSINR--ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR- 105 (124)
T ss_dssp HTEEEEEEECT------TCCHHHHHHHHHTTSCEEE--EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe-
Confidence 57999999997 4458999999999999999 999999989999999999999999999999 7999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 106 ~l~V~~a 112 (124)
T 2jwn_A 106 TIKVLPK 112 (124)
T ss_dssp ECEEEES
T ss_pred EEEEEEC
Confidence 7777764
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=122.47 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=72.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 69 ~~~~l~v~nl~~------~~~~~~l~~~F~~~G~v~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 69 GMTSLKVDNLTY------RTSPDTLRRVFEKYGRVGD--VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp BCCEEEEESCCT------TCCHHHHHHHHHHHSCEEE--EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467999999997 4458999999999999999 99999998999999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 141 -~l~v~~a~ 148 (158)
T 2kn4_A 141 -ELRVQMAR 148 (158)
T ss_dssp -EEEEEEEC
T ss_pred -EEEEEECC
Confidence 78887654
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=114.24 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=68.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+ +.++|||||+|.+.++|.+|++.|||..++++
T Consensus 28 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 28 QPKRLHVSNIPF------RFRDPDLRQMFGQFGKILD--VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHGGGTCCCSC--EEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------cCCHHHHHHHHHhcCCEEE--EEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457999999997 4458999999999999999 9999996 45999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 98 -~l~V~~a 104 (109)
T 2err_A 98 -KIEVNNA 104 (109)
T ss_dssp -ECEEEEC
T ss_pred -EEEEEEC
Confidence 7777654
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=114.11 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=68.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+|||+|||. +..+++|+++|++| .|.. |.|++|+ +|+++|||||+|.++++|.+|+ .+||..++++
T Consensus 16 ~~~v~V~nLp~------~~te~dl~~~F~~~-~v~~--v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr- 83 (109)
T 2dnn_A 16 DLYVSVHGMPF------SAMENDVRDFFHGL-RVDA--VHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR- 83 (109)
T ss_dssp HHEEEEECCCS------SCCHHHHHHHTTTS-CCCE--EEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHhccC-CeeE--EEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe-
Confidence 36999999998 55599999999999 8888 9999998 5999999999999999999999 6999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 84 ~i~V~~a~~ 92 (109)
T 2dnn_A 84 YVEVSPATE 92 (109)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCc
Confidence 777766543
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=123.65 Aligned_cols=79 Identities=30% Similarity=0.420 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+..|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..|.++
T Consensus 71 ~~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 71 EGWILFVTSIHE------EAQEDEIQEKFCDYGEIKN--IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp -CEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHhhcCCCEEE--EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467899999997 4458999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 143 -~l~V~~a 149 (165)
T 1rk8_A 143 -TIQVDWC 149 (165)
T ss_dssp -ECEEEES
T ss_pred -EEEEEEe
Confidence 7777664
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=112.58 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 24 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPL------SMDEQELENMLKPFGQVIS--TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CTTEEEEESCCT------TCCHHHHHHTTTTTSCEEE--EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 457999999997 4458899999999999999 9999999 99999999999999999999999999999964
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-11 Score=138.51 Aligned_cols=252 Identities=10% Similarity=0.055 Sum_probs=148.8
Q ss_pred eEEecCCCCCEEEEec--C----CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC-------CCCCe
Q 005140 323 VFRWGGGKDKYFAKLG--K----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG-------GNQPA 389 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~-------~~~~~ 389 (712)
.++||| ||++||.+. + ..|++||+.+++.+... .....+..++|+|| +.|++....... .+...
T Consensus 167 ~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 167 AWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred eEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 689999 999999876 2 36999999998875421 11112368899999 988874321100 00145
Q ss_pred EEEEEecCCccc----eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCC
Q 005140 390 RVSLVQIPSKEE----LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKND 464 (712)
Q Consensus 390 ~i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~ 464 (712)
+|+.+++.+... +............+.|+|+|++|++.+.+.. .....+.++++...... . ..+..+..
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~~l~~~d~~~~~~~~~--~~l~~~~~ 317 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT----DPVNTVHVARVTNGKIGPV--TALIPDLK 317 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT----CSCCEEEEEEEETTEECCC--EEEECSSS
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC----CCcceEEEEECCCCCCccc--EEecCCCC
Confidence 688998866542 1111111112456789999999999876542 01223566666543112 2 33334444
Q ss_pred ceEEEEEeeCCCEEEEEEcCC-CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 465 KIIAFAWEPKGHRFAVIHGDS-PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~d~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.+... ++|+|+.|++.+..+ +...|.+|++.++. ..+..+..-....+..++|+ ++.++++... ++..+||.
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~---dg~~~l~~ 390 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFASYIH---DAKSQVLA 390 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEEEEEE---TTEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEEEEEE---CCEEEEEE
Confidence 55555 459999999988753 23478899986532 11222221112245667777 5556666665 66655554
Q ss_pred CC-cceeeee--c-cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 544 VD-ELETMAT--A-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 544 ~~-~~~~~~~--~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++ ++..... . +...+..++++|+|+.|+....+ ....+.+++|++.+
T Consensus 391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS-FTQPATVLALDPAT 441 (741)
T ss_dssp EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEE-TTEEEEEEEEETTT
T ss_pred EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcC-CCCCCEEEEEECCC
Confidence 33 2333332 2 35678899999999876654432 01157888998764
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=109.87 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=68.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+. .++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPF------RFRDPDLRQMFGQFGKILD--VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHGGGTSCEEE--EEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4458899999999999999 99999973 4999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~v~~a~ 91 (103)
T 2cq3_A 84 -KIEVNNAT 91 (103)
T ss_dssp -ECEEEECC
T ss_pred -EEEEEEcc
Confidence 77777643
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=112.02 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=67.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.+ .+.|+.| .+|+++|||||+|.++++|.+|++. ||..++++
T Consensus 14 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~v~~-~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 14 NDGFVRLRGLPF------GCSKEEIVQFFSGLEIVPN-GMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHTTTCCEEEE-EEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCcce-eEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 357999999998 5559999999999999863 2789999 5999999999999999999999998 99999886
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 85 -~i~v~~~ 91 (104)
T 1wg5_A 85 -YIEIFKS 91 (104)
T ss_dssp -CCEEEEE
T ss_pred -EEEEEEC
Confidence 6676654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-11 Score=118.64 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=150.2
Q ss_pred CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
...+++|+|+|+ .++++..+ +.|..|+..++ .+.+..+..... .+++++ +|++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~----------~~i~~~~~~~~--~~~~~~~~~~~~-------------~l~~~~-dg~l 82 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQ----------NRTWAWSDDGQ--LSPEMHPSHHQN-------------GHCLNK-QGHL 82 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGG----------TEEEEEETTSC--EEEEESSCSSEE-------------EEEECT-TCCE
T ss_pred cccCCeEeCCCCEEEEEeCCC----------CEEEEEECCCC--eEEEECCCCCcc-------------eeeECC-CCcE
Confidence 478999999998 66677777 78999998776 555554433321 689999 9998
Q ss_pred EEEec-CCeEEEEEcCCceeccccc----ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKS----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 408 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (712)
+++.. ++.|.+|+..+++...... .....+.+++++|+|+++++ .+..+... ...... .
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt-----d~~~g~~~-------~~~~~~--~-- 146 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS-----DPTYGIDK-------PEEGYG--G-- 146 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEE-----ECSHHHHC-------GGGSSC--C--
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE-----CCcccccc-------cccccc--c--
Confidence 88777 7899999987766432111 11223567888888886664 11000000 000000 0
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
..... .-.||.+...+. . ..+..+......++|+|+|+.+++...++
T Consensus 147 -------~~~~~--------------------~~~l~~~~~~g~-~--~~~~~~~~~~~gi~~s~dg~~lv~~~~~~--- 193 (296)
T 3e5z_A 147 -------EMELP--------------------GRWVFRLAPDGT-L--SAPIRDRVKPNGLAFLPSGNLLVSDTGDN--- 193 (296)
T ss_dssp -------CCCSS--------------------SCEEEEECTTSC-E--EEEECCCSSEEEEEECTTSCEEEEETTTT---
T ss_pred -------cccCC--------------------CcEEEEECCCCC-E--EEeecCCCCCccEEECCCCCEEEEeCCCC---
Confidence 00000 012222222111 0 11113345667899999999984444455
Q ss_pred eEEEEEee-cccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEE-C
Q 005140 489 DISFYSMR-TAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW-D 564 (712)
Q Consensus 489 ~v~i~d~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~-s 564 (712)
.|.+|++. ++........+ ......+..++++++|+++++. ++.|.+|+.+ ++.+.. .+.. +++++| +
T Consensus 194 ~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-----~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~ 265 (296)
T 3e5z_A 194 ATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-----GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGG 265 (296)
T ss_dssp EEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-----TTEEEEECTT-SCEEEEEECSSC-CCEEEEES
T ss_pred eEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-----CCeEEEECCC-CCEEEEEECCCC-ceeEEEEC
Confidence 89999986 22210001112 2223356789999999866654 4689999987 555443 3334 889999 6
Q ss_pred CCCCEEEEEEccceeccccEEEEEecCceeeee
Q 005140 565 PTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 597 (712)
Q Consensus 565 pdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~ 597 (712)
|+++.|++++. + .+.-++.....+.+.
T Consensus 266 ~d~~~L~v~t~-----~-~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 266 PEGRTLYMTVS-----T-EFWSIETNVRGLEHH 292 (296)
T ss_dssp TTSCEEEEEET-----T-EEEEEECSCCBCCC-
T ss_pred CCCCEEEEEcC-----C-eEEEEEccccccccc
Confidence 99999999887 4 444455554444433
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=131.33 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC--eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG--VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g--~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-.++|||+|||. ...+.+|+++|++|| .|.+ |.|++|+.||++||||||+|.+.++|.+|++.|||..|+
T Consensus 67 ~~~~lfVgnL~~------~~te~~L~~~F~~~G~~~v~~--v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTW------WTTDEDLTEAVHSLGVNDILE--IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCT------TCCHHHHHHHHHTTTCCCEEE--EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCC------CCCHHHHHHHHHHHCCcceEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 567899999997 455899999999999 9999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 139 Gr-~l~V~~a~ 148 (229)
T 3q2s_C 139 GQ-NPVVTPVN 148 (229)
T ss_dssp TB-CCEEEECC
T ss_pred CE-EeEEEECC
Confidence 86 77777643
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-14 Score=115.54 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe---eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV---IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~---v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
.-.++|||+|||. +..+++|+++|++||. |.. |.|+.|+. |+++|||||+|.+.++|.+|++ +||..
T Consensus 9 ~~~~~l~V~nLp~------~~te~~l~~~F~~~g~~~~v~~--v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPW------SCTMEDVLNFFSDCRIRNGENG--IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCS------SCCSHHHHHHTTTSCBTTTTTT--EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCC------CCCHHHHHHHHHhcCCcCCcce--EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 3467999999997 4458899999999998 888 99999996 9999999999999999999999 99999
Q ss_pred cCCceEEEEEeec
Q 005140 134 LDRAHIFAVNMFD 146 (712)
Q Consensus 134 ~~~~~~l~v~~~~ 146 (712)
++++ .+.|....
T Consensus 79 ~~gr-~i~V~~a~ 90 (107)
T 2lmi_A 79 MGQR-YVEVYEIN 90 (107)
T ss_dssp SSSS-CCCCEECC
T ss_pred eCCe-EEEEEECC
Confidence 9886 66665543
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.8e-14 Score=117.16 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=68.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCee----eeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVI----KEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v----~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.-..+|||+|||. +..+++|+++|++||.| .. |.|+.|+ +|+++|||||+|.+.++|.+|++. |+.
T Consensus 21 ~~~~~v~V~nLp~------~~te~dl~~~F~~~g~v~g~v~~--v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~ 90 (123)
T 2dha_A 21 ENQVIVRMRGLPF------TATAEEVVAFFGQHCPITGGKEG--ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD 90 (123)
T ss_dssp CSCCEEEECSCCT------TCCHHHHHHHHHTTSCCTTGGGG--EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhhCCccCCcce--EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC
Confidence 3467999999998 55599999999999986 56 9999996 999999999999999999999996 999
Q ss_pred ccCCceEEEEEeec
Q 005140 133 KLDRAHIFAVNMFD 146 (712)
Q Consensus 133 ~~~~~~~l~v~~~~ 146 (712)
.++++ .+.|....
T Consensus 91 ~l~gR-~i~V~~a~ 103 (123)
T 2dha_A 91 LLGKR-YIELFRST 103 (123)
T ss_dssp ESSSC-EECCEEEC
T ss_pred eeCCe-EEEEEECC
Confidence 88886 66665543
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=112.71 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--YKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~~~~ 135 (712)
-+++|||+|||. +..+.+|+++|++||.|.+ +.|+.| ||||||+|++.++|.+|++.+|+ ..+.
T Consensus 30 ps~~LfVgNLp~------~vte~dL~~lF~~fG~V~~--v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 30 PSRVIHIRKLPI------DVTEGEVISLGLPFGKVTN--LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHHTTTSCCCE--EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 367999999997 5558999999999999999 999976 79999999999999999999874 6788
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 96 Gr-~l~V~~a 104 (119)
T 2ad9_A 96 GQ-PIYIQFS 104 (119)
T ss_dssp TB-CCEEEEC
T ss_pred Ce-EEEEEEc
Confidence 86 7777764
|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=109.76 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=66.0
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--c
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK--L 134 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~--~ 134 (712)
-+++|||+|||. -.. +.+|+++|++||.|.+ +.|+.| ||||||+|++.++|.+|++.||+.. +
T Consensus 14 p~~~l~V~nLp~~~~t------e~dL~~lF~~fG~V~~--v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNL------RYQLLQLVEPFGVISN--HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSH------HHHHHTTTGGGSCEEE--EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCC------HHHHHHHHHhcCCEEE--EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 467999999997 444 8899999999999999 999875 4899999999999999999998754 7
Q ss_pred CCceEEEEEeecccccc
Q 005140 135 DRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 135 ~~~~~l~v~~~~~~~~~ 151 (712)
.++ .+.|.......++
T Consensus 80 ~Gr-~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 80 FGK-PVRVHLSQKYKRI 95 (102)
T ss_dssp TTE-ECEEEEECCCTTS
T ss_pred CCc-EEEEEECCCCCCC
Confidence 875 8888776544333
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-11 Score=124.54 Aligned_cols=296 Identities=11% Similarity=0.045 Sum_probs=184.7
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---- 338 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---- 338 (712)
|+++++++....... .. +.|.++|+.+++.+..+...... .+.+|| ||++++.+.
T Consensus 82 ~~~~~vyV~n~~~~~----~~-~~VsVID~~t~~vv~~I~vG~~P---------------gia~Sp-Dgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFA----AI-TQQFVIDGSTGRILGMTDGGFLP---------------HPVAAE-DGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTC----SS-EEEEEEETTTTEEEEEEEECSSC---------------EEEECT-TSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCC----CC-CeEEEEECCCCEEEEEEECCCCC---------------ceEECC-CCCEEEEEecccc
Confidence 577777766653100 00 58999999999999888754322 489999 999776653
Q ss_pred -------CCeEEEEEcCCceeccccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 339 -------KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 339 -------d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
++.|.++|..+++.+....+. ......+.++|||++|.+ +.......|.++|..+.+.+..
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV-----~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLF-----YQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEE-----EECSSSCEEEEEETTTTEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEE-----EecCCCCeEEEEECCCCeEEEE
Confidence 568999999998877554332 123568999999999987 3233356789999998887665
Q ss_pred eeeeee-------cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc-eEEEEEeeCCC
Q 005140 405 KNLFSV-------SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK-IIAFAWEPKGH 476 (712)
Q Consensus 405 ~~~~~~-------~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~-v~~~~~sp~g~ 476 (712)
...... ...-+.++++|+.+++....+. +. .... . .+.. ...+ ...+.+++++.
T Consensus 216 I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~---------v~-~~~~-~-----~~~v--~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 216 LDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGE---------TK-VTNT-E-----VFHT--EDELLINHPAFSLRSG 277 (426)
T ss_dssp EECCSEEEEEEEETTEEEEEETTSSEEEEECCTTC---------CE-EEEC-C-----CCSC--TTSCBCSCCEECTTTC
T ss_pred EEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCc---------EE-EEee-e-----eecc--CCCceeeEeeecCCCC
Confidence 543211 1111344556655554442221 00 0000 0 0001 0111 12357889999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------CCceeEEEEccCCCeEEEEeccC-------CCceEE
Q 005140 477 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLAGLKG-------FNGQLE 540 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~~~~~~~-------~dg~v~ 540 (712)
.+++.+..+ .|.+.|+.+.... -...+.... ......++++|+|+.++++.... ..+.|.
T Consensus 278 ~~~~~s~~g---~V~ViD~~~~~~~-v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 278 RLVWPTYTG---KIFQADLTAEGAT-FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp EEEEEBTTS---EEEEEEECSSCEE-ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred EEEEEeCCC---cEEEEeccCCceE-EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 888887766 8999998543210 000111000 01123479999999888765310 146899
Q ss_pred EEECCcceeeeecccc-ceeeEEECCCCC-EEEEEEccceeccccEEEEEec-Cceeeee-cccceeeeEEecC
Q 005140 541 FYNVDELETMATAEHF-MATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRT-LKDHFFQFLWRPR 610 (712)
Q Consensus 541 iwd~~~~~~~~~~~~~-~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~-~~~~i~~~~w~p~ 610 (712)
++|..+++.+.+...+ ....+.|+|||+ +++++... ++.|.++|.. ++.+... ..+.-..+..+||
T Consensus 354 VID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~----s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 354 VLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG----TQTLHIYDAATGEELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp EEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred EEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC----CCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence 9999999998876543 488999999999 77777732 7999999987 4555553 3454445666664
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-13 Score=108.84 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT--NGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~--~~~~~~ 135 (712)
-+++|||+|||. +..+++|+++|++||.|.+ +.|+.+ ||||||+|++.++|.+|++.| ++..+.
T Consensus 14 p~~~l~V~nLp~------~~te~~L~~~F~~fG~v~~--v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 14 PSRVLHIRKLPG------EVTETEVIALGLPFGKVTN--ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHTTTTTSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 457999999997 5558999999999999999 988865 799999999999999999976 467788
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 80 Gr-~l~V~~a~ 89 (101)
T 2cq1_A 80 NQ-PIYIQYSN 89 (101)
T ss_dssp TE-ECEEEECS
T ss_pred Cc-EEEEEEcC
Confidence 85 77777643
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=117.09 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.+..+|+++|||||+|.+.++|.+|++ +||..|+++
T Consensus 24 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~v~~--~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPF------EAENKHVIDFFKKLDIVED--SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHSCSSCBCTT--TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCccc--eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 457999999997 5558999999999999987 7777777799999999999999999999999 999999986
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 95 -~i~V~~a~~ 103 (124)
T 1wel_A 95 -FIQVHPITK 103 (124)
T ss_dssp -CBEEEEECH
T ss_pred -EEEEEECCH
Confidence 777766443
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=112.73 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=65.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. +..+++|+++|++|| .|.. +.++.+ +++|||||+|.+.++|++|++.|||..+++
T Consensus 27 ~~~~l~VgnLp~------~~te~dL~~~F~~~G~~v~~--v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPE------GCSWQDLKDLARENSLETTF--SSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSC------CCCHHHHHHHHHHHTCCCSE--EECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHhCCeeEE--EEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 357999999997 445899999999999 8998 888643 589999999999999999999999999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 95 r-~i~V~~a 102 (111)
T 2jvr_A 95 S-VITVERD 102 (111)
T ss_dssp E-EEEEEES
T ss_pred e-EEEEEEC
Confidence 6 7888764
|
| >3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=109.07 Aligned_cols=86 Identities=17% Similarity=0.350 Sum_probs=72.2
Q ss_pred CCEEEECCCC----CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC--CCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 59 GNIIVVDNLP----VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET--QKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 59 ~~~~~v~~lp----~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~--~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
+++|++.|+= ...+.-++.++++|++.|++||.|.+ +.||.|+.+ ++++|||||+|.++++|.+|++.|||.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~--v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS--IEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE--EECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE--EEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5689999983 22333355688999999999999999 999999865 478999999999999999999999999
Q ss_pred ccCCceEEEEEeecc
Q 005140 133 KLDRAHIFAVNMFDD 147 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~ 147 (712)
.++++ .+.|..+..
T Consensus 83 ~f~GR-~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANR-VVVTKYCDP 96 (105)
T ss_dssp EETTE-ECEEEEECH
T ss_pred EeCCC-EEEEEEeCH
Confidence 99986 888776543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-11 Score=119.54 Aligned_cols=278 Identities=13% Similarity=0.071 Sum_probs=165.8
Q ss_pred eEEEEEC-----CeeEEEecCCCCCCCcccc-c-----CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee
Q 005140 184 QFVIRSG-----TDTEVLWNDARHLKPEPVY-K-----RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 184 ~~~~~~~-----~~~~~~w~~~~~~~~~~~~-~-----~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
.|++-.+ ++++.+++. ..++....+ . ........+++.. +++.++...++ |.+||.. +++.+.++
T Consensus 4 ~~v~neg~~g~~~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~-t~~~~~~i 80 (328)
T 3dsm_A 4 LFITNEGNFQYSNATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDIN-TFKEVGRI 80 (328)
T ss_dssp EEEEECCCTTSCCBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETT-TCCEEEEE
T ss_pred EEEEecCCCCCCCceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECc-ccEEEEEc
Confidence 4555555 677778887 333322211 1 1112345577743 44444444444 8899999 88887777
Q ss_pred cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.. .....++++|+|+..++...+ +.|.+||..+++....+....... ....+. .+++ . +
T Consensus 81 ~~~~~p~~i~~~~~g~lyv~~~~~----------~~v~~iD~~t~~~~~~i~~g~~~~---~~~~p~-----~i~~-~-~ 140 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDEKAYVTQIWD----------YRIFIINPKTYEITGYIECPDMDM---ESGSTE-----QMVQ-Y-G 140 (328)
T ss_dssp ECCSSEEEEEEEETTEEEEEEBSC----------SEEEEEETTTTEEEEEEECTTCCT---TTCBCC-----CEEE-E-T
T ss_pred CCCCCCcEEEEeCCCeEEEEECCC----------CeEEEEECCCCeEEEEEEcCCccc---cCCCcc-----eEEE-E-C
Confidence 53 458999999999554554366 789999999998877766443100 000011 3566 5 6
Q ss_pred CCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCC--------CeEEEEEecCCcc
Q 005140 331 DKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ--------PARVSLVQIPSKE 400 (712)
Q Consensus 331 g~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~--------~~~i~~~~~~~~~ 400 (712)
+..+++. + ++.|.++|+.+++.+..... ......+.++|+|+++++ +..+. ...|+.++..+.+
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~-----~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTI-----TDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEE-----BCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEE-----ECCCccCCccccCCceEEEEECCCCe
Confidence 6655554 2 88999999998887654432 234678899999986655 21110 1334444332211
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.. ..+.++ .......++|+|+++++++
T Consensus 215 v~----------------------------------------------------~~~~~~-~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 215 VE----------------------------------------------------KQFKFK-LGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp EE----------------------------------------------------EEEECC-TTCCCEEEEECTTSCEEEE
T ss_pred EE----------------------------------------------------EEEecC-CCCCceeEEEecCCCEEEE
Confidence 00 011121 1235778999999998888
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEecc--CCCceEEEEECCcceeeeec
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLK--GFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~--~~dg~v~iwd~~~~~~~~~~ 553 (712)
+.. .|.+||..++... ....+. ......++++|++..|+++... ..++.|.+||.. ++.+.+.
T Consensus 242 ~~~-----~v~~~d~~t~~~~----~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 242 INN-----DIWRMPVEADRVP----VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp ESS-----SEEEEETTCSSCC----SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred Ecc-----EEEEEECCCCcee----eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 654 6888998665421 001111 3457889999965555555411 027899999998 7766553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=122.68 Aligned_cols=246 Identities=12% Similarity=0.080 Sum_probs=146.4
Q ss_pred cccceEEEcCCCcEEEEEecC-------------------------ceEEeecccCcceeeeecC---CCeeEEEecCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ-------------------------GAAVWGGANTFNRLMRYAH---PQVKLIDFSPGE 265 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~-------------------------~i~iw~~~~~~~~~~~~~~---~~v~~i~~Spdg 265 (712)
..+.+++++|+|+++++...+ .|.+||.. +++.+..+.. .....++++|+|
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCCCccCCceEEEECCCC
Confidence 567899999999999988877 37899988 6666655542 358899999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcC-eEEecCCCCCEEEEec--CC
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKDKYFAKLG--KN 340 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~dg~~la~~~--d~ 340 (712)
+.+++...+ +.|++|+. +|. .+..+......- .. ...+..| .++++|.++.++++.+ ++
T Consensus 103 ~l~v~d~~~----------~~v~~~~~-~g~~~~~~~~~~~~~~g---~~--~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 103 NYWVTDVAL----------HQVFKLDP-HSKEGPLLILGRSMQPG---SD--QNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp CEEEEETTT----------TEEEEECT-TCSSCCSEEESBTTBCC---CS--TTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CEEEEECCC----------CEEEEEeC-CCCeEEEEEecccCCCC---CC--ccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 988888777 89999996 444 455442211000 00 0001111 5888872356666653 78
Q ss_pred eEEEEEcCCceeccccc----------ccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee
Q 005140 341 MISVYETESFTLIDKKS----------LKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 409 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 409 (712)
.|.+|+. ++..+.... .+......++++|+ +.++++ .....+|..|+..+
T Consensus 167 ~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~-------d~~~~~I~~~~~~~----------- 227 (329)
T 3fvz_A 167 RIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA-------DRENGRIQCFKTDT----------- 227 (329)
T ss_dssp EEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE-------ETTTTEEEEEETTT-----------
T ss_pred eEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE-------ECCCCEEEEEECCC-----------
Confidence 9999994 454443221 12223677788887 444443 22223444433221
Q ss_pred ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc----CC
Q 005140 410 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG----DS 485 (712)
Q Consensus 410 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~----d~ 485 (712)
|+++.. +....+...+.+++++| +..++..+. +.
T Consensus 228 -----------G~~~~~------------------------------~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~ 265 (329)
T 3fvz_A 228 -----------KEFVRE------------------------------IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQ 265 (329)
T ss_dssp -----------CCEEEE------------------------------ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCS
T ss_pred -----------CcEEEE------------------------------EeccccCCCcceeeecC-CEEEEeCCCEEeccC
Confidence 322211 11123345666777887 322222211 11
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
....|.+|++.++. .+..+. ......++++|+|..+++... ++.|++|++..
T Consensus 266 ~~~~v~~~~~~~g~------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~---~~~I~~~~~~~ 322 (329)
T 3fvz_A 266 EPVQGFVMNFSSGE------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH---TNTVWKFTLTE 322 (329)
T ss_dssp CCCCEEEEETTTCC------EEEEECCSSSCCSSEEEEEECTTSEEEEEESS---SCCEEEEEEEE
T ss_pred CCcEEEEEEcCCCe------EEEEEcCCCCccCCeeEEEECCCCCEEEEECC---CCEEEEEeCCc
Confidence 12379999987654 445542 124788999999966666555 78999999863
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=109.50 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=67.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.+ ++++|||||+|.+.++|.+|++.|||..++++
T Consensus 21 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 21 NDCRIYVGNLPP------DIRTKDIEDVFYKYGAIRD--IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 467999999997 4458999999999999999 999765 56899999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 90 -~l~V~~a~ 97 (109)
T 1x4a_A 90 -RLRVEFPR 97 (109)
T ss_dssp -ECEEECCC
T ss_pred -EEEEEEcc
Confidence 77777643
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=113.46 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=67.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++ ||..++++
T Consensus 9 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~- 76 (102)
T 2xs2_A 9 PNTVFVGGIDV------RMDETEIRSFFARYGSVKE--VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK- 76 (102)
T ss_dssp EEEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE-
Confidence 46999999997 4458999999999999999 9999999 99999999999999999999999 88888885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 77 ~l~v~~a~ 84 (102)
T 2xs2_A 77 KLKLGPAI 84 (102)
T ss_dssp ECEEEEEE
T ss_pred EEEEEECC
Confidence 66665544
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=111.33 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=64.7
Q ss_pred cCCCCEEEECCCCCCCchhhh-hhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC--C
Q 005140 56 SGFGNIIVVDNLPVVPKEKFE-KLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--Y 132 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~-~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~ 132 (712)
..-+++|||+|||. + ..+.+|+++|++||.|.+ +.|+. +||||||+|++.++|.+|++.||+ .
T Consensus 22 ~~p~~~l~V~NLp~------~~~te~~L~~lF~~fG~V~~--v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 22 QELGRVIHLSNLPH------SGYSDSAVLKLAEPYGKIKN--YILMR------MKSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp SCCCCEEEEESCCC------SSCCSHHHHTTTTTTSCCSE--EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCC------ccCCHHHHHHHHHhcCCEEE--EEEec------CCCEEEEEECCHHHHHHHHHHhccCCc
Confidence 33478999999997 3 447889999999999999 98873 579999999999999999998864 5
Q ss_pred ccCCceEEEEEeeccc
Q 005140 133 KLDRAHIFAVNMFDDF 148 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~ 148 (712)
.++++ .+.|......
T Consensus 88 ~l~Gr-~l~V~~a~~~ 102 (112)
T 1x4f_A 88 WFQGR-CVKVDLSEKY 102 (112)
T ss_dssp CSSSS-CCEEEEECSC
T ss_pred eECCE-EEEEEECccc
Confidence 58875 7888775543
|
| >2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-13 Score=102.74 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=60.5
Q ss_pred EEEECCCCC-CCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 61 IIVVDNLPV-VPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 61 ~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.|||+|||. +.+ +.+...|+++|++|| +|.+ | || |||||+|.+.++|.+|++.|||..+.++
T Consensus 11 ~lYV~NL~~~~~~---~~lk~~L~~lF~~yGG~Vl~--V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr- 74 (96)
T 2diu_A 11 LLYVYNLPANKDG---KSVSNRLRRLSDNCGGKVLS--I-------TG---CSAILRFINQDSAERAQKRMENEDVFGN- 74 (96)
T ss_dssp EEEEESCCTTSCH---HHHHHHHHHHHHTTTCCEEE--C-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS-
T ss_pred EEEEeCCCCcCCH---HHHHHHHHHHHHHcCCeeEE--E-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc-
Confidence 499999994 554 667888999999995 9988 5 45 9999999999999999999999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+++.....
T Consensus 75 ~i~v~~A~~ 83 (96)
T 2diu_A 75 RIIVSFTPK 83 (96)
T ss_dssp CCEEESSCC
T ss_pred eEEEEecCC
Confidence 777766544
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-13 Score=121.65 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-+++|||+|||. ...+++|+++|++||.|.. |.|+.|+ +|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 86 ~~~~~l~V~nLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDF------GVSDADIQELFAEFGTLKK--AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCS------CCCHHHHHHHHHHTSCCSE--EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 3468999999997 4458899999999999999 9999999 99999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 157 r-~l~V~~a~ 165 (177)
T 2f3j_A 157 R-PMDIQLVA 165 (177)
T ss_dssp S-BCEEEEES
T ss_pred E-EEEEEEec
Confidence 5 77777654
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-13 Score=111.64 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=69.1
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+++|||+|||. ...+.+|+++|++||.|.. +.++.| +.++|||||+|.+.++|.+|++.|||..+++
T Consensus 6 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 6 EVNRILYIRNLPY------KITAEEMYDIFGKYGPIRQ--IRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TCCSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3467999999997 4458899999999999999 999976 4669999999999999999999999999988
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 75 ~-~l~v~~a~~ 84 (115)
T 3lqv_A 75 R-YLVVLYYNA 84 (115)
T ss_dssp C-BCEEEECCH
T ss_pred e-EEEEEEecC
Confidence 5 788876554
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=109.06 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY--KLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~--~~~~ 136 (712)
+++|||+|||. +..+.+|+++|++||.|.+ +.|+.+ ||||||+|++.++|.+|++.||+. .+.+
T Consensus 15 ~~~l~V~nLp~------~~te~~L~~~F~~fG~V~~--v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 15 SPVVHVRGLCE------SVVEADLVEALEKFGTICY--VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSEEEEESCCS------SCCHHHHHHHHTTTSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 57999999997 5558999999999999999 998864 799999999999999999998765 4777
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 81 r-~l~V~~a~ 89 (104)
T 1wex_A 81 Q-QAFFNYST 89 (104)
T ss_dssp S-BCEEEECS
T ss_pred E-EEEEEEcc
Confidence 5 77776643
|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.3e-13 Score=109.67 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=62.2
Q ss_pred CCCEEEE--CCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-
Q 005140 58 FGNIIVV--DNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL- 134 (712)
Q Consensus 58 ~~~~~~v--~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~- 134 (712)
-.++||| +|||. +..++.|+++|++||.|.. +.|+.+ ||||||+|.+.++|++|++.|||..+
T Consensus 24 pt~~L~V~Ng~L~~------~~te~~L~~~F~~fG~v~~--v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 24 ATQSLVVANGGLGN------GVSRNQLLPVLEKCGLVDA--LLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp CCSEEEEETCTGGG------TCCHHHHHHHHHHHSCEEE--EECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEECCCCCC------CCCHHHHHHHHHhcCCeEE--EEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 3578999 88997 4448999999999999999 988753 79999999999999999999999877
Q ss_pred ---CCceEEEEEeec
Q 005140 135 ---DRAHIFAVNMFD 146 (712)
Q Consensus 135 ---~~~~~l~v~~~~ 146 (712)
++..++.|....
T Consensus 90 ~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 90 DDLGQKITLYLNFVE 104 (114)
T ss_dssp CTTSCEEECEEEEES
T ss_pred cccCCCcEEEEEecc
Confidence 233466666543
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=108.01 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=67.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.| .++.+ .+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~g~v-----~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSY------SATEETLQEVFEKATFI-----KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHCSSCSEE-----ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCEE-----EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 467999999997 45589999999999985 57777 4899999999999999999999999999999984
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 82 -~l~v~~a~~ 90 (101)
T 2fc9_A 82 -AIRLELQGP 90 (101)
T ss_dssp -EEEEEECSS
T ss_pred -EEEEEEcCC
Confidence 888877543
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-13 Score=109.09 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=68.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++|+ . +.++.|+.+++++|||||+|.+.++|.+|++.|||..+++
T Consensus 13 ~~~~~l~V~nLp~------~~t~~~l~~~F~~~~---~--~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSE------DTTEETLKESFDGSV---R--ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCT------TCCHHHHHHTSTTCS---E--EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCC------ccCHHHHHHHhcCCe---E--EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3467999999997 445889999999885 4 7888998899999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 82 ~-~l~V~~a~ 90 (102)
T 2fc8_A 82 N-KVTLDWAK 90 (102)
T ss_dssp E-ECEEEECC
T ss_pred e-EEEEEEec
Confidence 5 77777644
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-13 Score=113.39 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.+..+..+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 24 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSP------RVTERDLVSLFARFQEKKG--PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCSEEEEECCCT------TCCHHHHHHHTHHHHHSSS--SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCccc--eEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 468999999997 4458999999999999965 44444444899999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 96 -~l~v~~a~ 103 (115)
T 2cpx_A 96 -ILVIEFGK 103 (115)
T ss_dssp -BCEEEECC
T ss_pred -EEEEEEcc
Confidence 77777654
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=111.39 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=64.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+.+|+++|++||.|.. |.|+. ++|||||+|.+.++|.+|++.|||..++++
T Consensus 10 ~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~--v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~- 74 (111)
T 1whx_A 10 KTVILAKNLPA------GTLAAEIQETFSRFGSLGR--VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV- 74 (111)
T ss_dssp EEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe-
Confidence 46999999997 5559999999999999999 98874 679999999999999999999999999986
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 75 ~l~V~~a~ 82 (111)
T 1whx_A 75 PLYLEWAP 82 (111)
T ss_dssp BCEEEEEE
T ss_pred EEEEEECC
Confidence 66766543
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-13 Score=113.56 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=65.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++| .|..+.|.|++|+. |++||||||+|.++++|.+|++. ++..|+++
T Consensus 41 ~~~~lfVgnLp~------~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR 111 (126)
T 2hgm_A 41 NDGFVRLRGLPF------GCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHR 111 (126)
T ss_dssp SCCEEEEECCCT------TCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCE
Confidence 467999999998 55599999999999 56622299999995 99999999999999999999985 77888886
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 112 -~I~V~~a 118 (126)
T 2hgm_A 112 -YIEVFKS 118 (126)
T ss_dssp -CCCCEEE
T ss_pred -EEEEEEC
Confidence 5665543
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=108.97 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR- 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~- 136 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.| |||||+|.+.++|++|++.|||..+++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPP------SGSWQDLKDHMREAGDVCY--ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCS------SCCHHHHHHHHGGGSCEEE--EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 467999999997 4558999999999999999 999987 899999999999999999999999987
Q ss_pred ----ceEEEEEeecc
Q 005140 137 ----AHIFAVNMFDD 147 (712)
Q Consensus 137 ----~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 79 ~~~~~-~i~V~~a~~ 92 (108)
T 1x4c_A 79 EGETA-YIRVKVDGP 92 (108)
T ss_dssp TSCEE-EEEEEESSC
T ss_pred cCcce-EEEEEeCCC
Confidence 4 777776543
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=118.86 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=66.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++|| |++ |.|++|+. |++||||||+|.+.++|++|+ .+|+..++++
T Consensus 45 ~~~~lfV~nLp~------~~te~dL~~~F~~~G-i~~--v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 45 TGHCVHMRGLPY------KATENDIYNFFSPLN-PVR--VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCCCEECCSCCT------TCCHHHHHHHHCSCC-CSE--EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcC-CeE--EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 457999999998 555999999999999 678 99999984 999999999999999999999 7899999886
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 114 -~i~V~~ 119 (139)
T 2hgn_A 114 -YIELFL 119 (139)
T ss_dssp -CCCCEE
T ss_pred -EEEEEE
Confidence 555544
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-13 Score=112.78 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=67.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. .++.|+.+|+++|||||+|.+.++|.+|++ |||..++++
T Consensus 16 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~---~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNP------NKSVAELKVAISELFAKND---LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp CSEEEEEECCCT------TSCHHHHHHHHHHHHHHHT---CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCcce---EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 357999999997 4558999999999999876 467787799999999999999999999999 999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 86 -~l~V~~a~ 93 (101)
T 1fj7_A 86 -EIKLEKPK 93 (101)
T ss_dssp -CCEEECCS
T ss_pred -EEEEEEcC
Confidence 77776643
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=124.32 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=70.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.+ |.|+.|+.||+++|||||+|.+.++|.+|++.+||..+.++
T Consensus 15 ~~tlfVgnLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~- 85 (213)
T 4f02_A 15 MASLYVGDLHP------DVTEAMLYEKFSPAGPILS--IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK- 85 (213)
T ss_dssp CCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CcEEEEeCCCC------CCCHHHHHHHHHhhCCEEE--EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc-
Confidence 47999999997 5559999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.+..
T Consensus 86 ~i~~~~ 91 (213)
T 4f02_A 86 PVRIMW 91 (213)
T ss_dssp ECEEEE
T ss_pred cccccc
Confidence 555544
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=107.86 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=66.2
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.. +.++.| ++|||||+|.+.++|.+|++.|||..++++ .
T Consensus 1 ~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~ 66 (101)
T 2hvz_A 1 MKVYVGNLGT------GAGKGELERAFSYYGPLRT--VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-R 66 (101)
T ss_dssp CEEEEECCCS------SCSHHHHHHHHHHHCCCSE--EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-C
T ss_pred CEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCc-E
Confidence 5899999997 4458999999999999999 999987 889999999999999999999999999986 6
Q ss_pred EEEEeecc
Q 005140 140 FAVNMFDD 147 (712)
Q Consensus 140 l~v~~~~~ 147 (712)
+.|.....
T Consensus 67 l~V~~a~~ 74 (101)
T 2hvz_A 67 VRVELSTG 74 (101)
T ss_dssp CEEEESSS
T ss_pred EEEEEccC
Confidence 77776554
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=108.19 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=67.4
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-.++|||+|||. ...+++|+++|++||.|.. +.|+.+ +|||||+|.+.++|.+|++.|||..++
T Consensus 22 ~~~~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~--v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 22 SPKNCTVYCGGIAS------GLTDQLMRQTFSPFGQIME--IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp CSSCCEEEEECCSS------CCCHHHHHHHHHHHSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 33578999999997 4448999999999999999 999987 799999999999999999999999999
Q ss_pred CceEEEEEeecc
Q 005140 136 RAHIFAVNMFDD 147 (712)
Q Consensus 136 ~~~~l~v~~~~~ 147 (712)
++ .+.|.....
T Consensus 88 g~-~l~v~~a~~ 98 (109)
T 1x4g_A 88 GH-VVKCYWGKE 98 (109)
T ss_dssp TE-ECEEECCCC
T ss_pred Cc-EEEEEecCC
Confidence 85 788876543
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-13 Score=108.34 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHH----HHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIR----KIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~----~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
-+++|||+|||. +..+++|+ ++|++||.|.. +.++. +|+++|||||+|.+.++|.+|++.|||..
T Consensus 7 ~~~~l~V~nLp~------~~~~~~l~~~l~~~f~~~G~i~~--v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 7 PNHTIYINNLNE------KIKKDELKKSLHAIFSRFGQILD--ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp CCSEEEEESCCT------TSCHHHHHHHHHHHHGGGSCEEE--EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHHHhCCCEEE--EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 467999999996 33355566 99999999999 98883 68899999999999999999999999999
Q ss_pred cCCceEEEEEeec
Q 005140 134 LDRAHIFAVNMFD 146 (712)
Q Consensus 134 ~~~~~~l~v~~~~ 146 (712)
++++ .+.|....
T Consensus 76 ~~g~-~l~v~~a~ 87 (97)
T 1nu4_A 76 FYDK-PMRIQYAK 87 (97)
T ss_dssp ETTE-ECEEEECS
T ss_pred ECCc-EEEEEEcc
Confidence 9884 77777643
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=105.73 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=63.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-c
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-A 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~ 137 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.+ +|||||+|.+.++|.+|++.|||..+++ .
T Consensus 17 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 17 TTRLWVGGLGP------NTSLAALAREFDRFGSIRT--IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CSCEEEECCCS------SCCHHHHHHHHHTTSCEEE--EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 57999999997 4448999999999999999 988754 7899999999999999999999999982 2
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
+.+.|....
T Consensus 83 ~~l~V~~a~ 91 (97)
T 1why_A 83 RRLRVDFAK 91 (97)
T ss_dssp CBCEEEECC
T ss_pred cEEEEEECC
Confidence 477777643
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=103.10 Aligned_cols=71 Identities=27% Similarity=0.310 Sum_probs=63.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++ ||||||+|.+.++|.+|++.|||..++++
T Consensus 8 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 70 (90)
T 2dnq_A 8 MVKLFIGNLPR------EATEQEIRSLFEQYGKVLE--CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV- 70 (90)
T ss_dssp CEEEEEESCCS------SCCHHHHHHHHHTSSCEEE--EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC-
T ss_pred CeEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc-
Confidence 46999999997 4458899999999999999 9887 68999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 71 ~l~v~~a~ 78 (90)
T 2dnq_A 71 NINVEASK 78 (90)
T ss_dssp BCEEECSS
T ss_pred EEEEEECC
Confidence 77777644
|
| >3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=108.36 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE----TQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~----~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
.+++|++.|+-.. ++=.+-++++|++.|++||.|.+ +.||.|+. +++++||+||+|.++++|.+|++.|||..
T Consensus 19 ps~vl~L~Nm~~~-~el~ddleedl~eef~k~G~V~~--v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 19 ESTVMVLRNMVDP-KDIDDDLEGEVTEECGKFGAVNR--VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp SCCEEEEESCSCG-GGCCTTHHHHHHHHHTTTSCEEE--EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHHHHHhccCCEeE--EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 4789999999532 11113478999999999999999 99999864 46789999999999999999999999999
Q ss_pred cCCceEEEEEeecc
Q 005140 134 LDRAHIFAVNMFDD 147 (712)
Q Consensus 134 ~~~~~~l~v~~~~~ 147 (712)
++++ .+.|..+..
T Consensus 96 f~GR-~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGR-KVVAEVYDQ 108 (118)
T ss_dssp ETTE-ECEEEEECH
T ss_pred ECCc-EEEEEEcCh
Confidence 9996 888877654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-10 Score=113.39 Aligned_cols=218 Identities=11% Similarity=0.058 Sum_probs=152.3
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 341 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~ 341 (712)
..+++|++++.+ +.|.+||..+|+.+..+..+.. ... .+.++| +|++++ +.++.
T Consensus 3 ~~~~~lv~~~~~----------~~v~~~d~~tG~~~w~~~~~~~~~~~-------------~~~~~p-dG~ilv-s~~~~ 57 (276)
T 3no2_A 3 SPQHLLVGGSGW----------NKIAIINKDTKEIVWEYPLEKGWECN-------------SVAATK-AGEILF-SYSKG 57 (276)
T ss_dssp CCCEEEEECTTC----------SEEEEEETTTTEEEEEEECCTTCCCC-------------EEEECT-TSCEEE-ECBSE
T ss_pred CCCcEEEeeCCC----------CEEEEEECCCCeEEEEeCCCccCCCc-------------CeEECC-CCCEEE-eCCCC
Confidence 346789999988 8999999889999999987642 211 688999 999988 45788
Q ss_pred EEEEEcCCceecccccccc-cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 342 ISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
|..||. +++.+....... ..+.++.+.|+|++++. .+.+ ..+++. ++++
T Consensus 58 V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~-----~~~~-~~~v~~-----------------------vd~~ 107 (276)
T 3no2_A 58 AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVA-----WCGH-PSTILE-----------------------VNMK 107 (276)
T ss_dssp EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEE-----EEST-TEEEEE-----------------------ECTT
T ss_pred EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEE-----ecCC-CCEEEE-----------------------EeCC
Confidence 999998 788776655432 34778899999998886 2221 334432 3555
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.+...... . . ..++......++..++|+++++...++ .|..||.+ ++
T Consensus 108 Gk~l~~~~~~------------------~-~-------~~~~~~~~~~v~~~~~G~~lv~~~~~~---~v~~~d~~-G~- 156 (276)
T 3no2_A 108 GEVLSKTEFE------------------T-G-------IERPHAQFRQINKNKKGNYLVPLFATS---EVREIAPN-GQ- 156 (276)
T ss_dssp SCEEEEEEEC------------------C-S-------CSSGGGSCSCCEECTTSCEEEEETTTT---EEEEECTT-SC-
T ss_pred CCEEEEEecc------------------C-C-------CCcccccccCceECCCCCEEEEecCCC---EEEEECCC-CC-
Confidence 6543221110 0 0 001112344557788999998887777 89999985 44
Q ss_pred cCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--------cceeeEEECCCCCEEE
Q 005140 501 AGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--------FMATDVEWDPTGRYVA 571 (712)
Q Consensus 501 ~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--------~~v~~~~~spdg~~l~ 571 (712)
.+.++.. ....++...++|+.++++.. ++.|..+|..+++.+.+... ..++.++..++|..++
T Consensus 157 -----~~w~~~~~~~~~~~~~~~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 157 -----LLNSVKLSGTPFSSAFLDNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp -----EEEEEECSSCCCEEEECTTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred -----EEEEEECCCCccceeEcCCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 4444442 34567788999999988876 77899999998888765321 2367889999999888
Q ss_pred EEE
Q 005140 572 TAV 574 (712)
Q Consensus 572 t~s 574 (712)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-14 Score=117.88 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeece------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDG------LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~------~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
-.++|||+|||. +..+++|+++|++||.|.... +.++.|+.+|+++|||||+|.+.++|.+|++.|||
T Consensus 6 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 6 DNNTIFVQGLGE------NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 357999999997 555889999999999986522 67999988999999999999999999999999999
Q ss_pred CccCCceEEEEEeec
Q 005140 132 YKLDRAHIFAVNMFD 146 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~ 146 (712)
..++++ .+.|....
T Consensus 80 ~~~~g~-~l~V~~a~ 93 (116)
T 2lcw_A 80 KEFSGN-PIKVSFAT 93 (116)
Confidence 999885 77776643
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-12 Score=102.86 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=63.1
Q ss_pred cCCCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 56 SGFGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 56 ~~~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
..-+++|||+|||. -.. +++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t------~~~L~~~F~~~G~v~~--v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS------KEDLFRIFSPYGHIMQ--INIK--------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCC------HHHHHHHHGGGSCEEE--EEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCC------HHHHHHHHHhcCCEEE--EEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44578999999994 333 8889999999999999 8884 79999999999999999999999999
Q ss_pred CCceEEEEEee
Q 005140 135 DRAHIFAVNMF 145 (712)
Q Consensus 135 ~~~~~l~v~~~ 145 (712)
+++ .+.|...
T Consensus 83 ~g~-~l~V~~a 92 (97)
T 2xnq_A 83 FGK-KLILEVS 92 (97)
T ss_dssp TTE-ECEEEEC
T ss_pred CCE-EEEEEec
Confidence 885 7777654
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=106.36 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=64.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. + ..+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 15 ~~~~l~V~nL~~------~~t~~~l~~~F~~~g~v~~--~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSF------NITEDELKEVFEDALEIRL--V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCS------SCCHHHHHHHHCSEEEECC--E-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhhCCcEEE--e-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 357999999997 4448899999999999866 5 34799999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 82 -~l~v~~a~ 89 (96)
T 1fjc_A 82 -SVSLYYTG 89 (96)
T ss_dssp -EEEEEECS
T ss_pred -EEEEEEcC
Confidence 78877643
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=105.97 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=65.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.+ ||||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 14 QRSRLFVGNLPP------DITEEEMRKLFEKYGKAGE--VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CTTEEEEESCCT------TCCHHHHHHHTSTTCCCSE--EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhhcCCeEE--EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 457999999997 4448899999999999999 999854 79999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 80 -~l~v~~a~~ 88 (99)
T 2cpj_A 80 -QLRVRFACH 88 (99)
T ss_dssp -CCEEEESSC
T ss_pred -eEEEEEcCC
Confidence 788776543
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=104.90 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=64.9
Q ss_pred ccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 55 ESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 55 ~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.....++|||+|||. +..+++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.|||..+
T Consensus 15 ~~~~~~~l~V~nL~~------~~t~~~l~~~F~~~G~v~---~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 15 GAPLAADVYVGNLPR------DARVSDLKRALRELGSVP---LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL 81 (97)
T ss_dssp SSCCCCEEEEECCCT------TCCHHHHHHHHHHTTCCC---SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCS
T ss_pred CCCCCCEEEEeCCCC------cCcHHHHHHHHHhcCCEE---EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 344678999999997 445899999999999984 34444 47899999999999999999999999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 82 ~g~-~l~V~~a~ 92 (97)
T 2e5j_A 82 GTD-TLRVALAR 92 (97)
T ss_dssp SSS-CCEEEECC
T ss_pred CCc-EEEEEEcC
Confidence 986 77777643
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=106.58 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=63.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..++++
T Consensus 30 ~~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~--v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPL------DVQESELNEIFGPFGPMKE--VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp SCSEEEECSSCT------TCCHHHHHHHHTTTSCCCE--EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457999999997 4448899999999999999 8887 79999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 94 -~l~V~~a 100 (108)
T 2jvo_A 94 -PLEVVYS 100 (108)
T ss_dssp -ECEEESC
T ss_pred -EEEEEEe
Confidence 7777654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-10 Score=113.28 Aligned_cols=238 Identities=6% Similarity=-0.078 Sum_probs=143.9
Q ss_pred CeeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~-t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
...+++++|+|+.++ +...+ +.|.+|+..++........+.... . .+++++ +|++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~p--------~-----~i~~~~-~g~l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMY----------GRVVKLATGSTGTTVLPFNGLYQP--------Q-----GLAVDG-AGTV 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSS----------CEEEEECC-----EECCCCSCCSC--------C-----CEEECT-TCCE
T ss_pred CccceEECCCCCEEEEccCCC----------CcEEEecCCCcccceEeeCCcCCc--------c-----eeEECC-CCCE
Confidence 678999999999666 43555 789999875544322111111111 1 589999 9987
Q ss_pred EEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 334 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 334 la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
+++..++.|.+|+..+.............+.+++++|+|+.+++ ......|+.++..+....
T Consensus 81 ~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-------~~~~~~i~~~~~~~~~~~----------- 142 (270)
T 1rwi_B 81 YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA-------DRGNNRVVKLAAGSKTQT----------- 142 (270)
T ss_dssp EEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEE-------EGGGTEEEEECTTCCSCE-----------
T ss_pred EEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEE-------ECCCCEEEEEECCCceeE-----------
Confidence 66665889999998754332111112245788888888875554 111223433321110000
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
.....+...+.+++++|+|+.+++...++ .|.+|
T Consensus 143 -------------------------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i~~~ 176 (270)
T 1rwi_B 143 -------------------------------------------VLPFTGLNDPDGVAVDNSGNVYVTDTDNN---RVVKL 176 (270)
T ss_dssp -------------------------------------------ECCCCSCCSCCCEEECTTCCEEEEEGGGT---EEEEE
T ss_pred -------------------------------------------eeccccCCCceeEEEeCCCCEEEEECCCC---EEEEE
Confidence 00001123456788999998655554455 79999
Q ss_pred EeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEE
Q 005140 494 SMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l 570 (712)
+..+... ....... ..+..++++|+|..+++... ++.|.+|+..+...... .+...+.+++++|+|+.+
T Consensus 177 ~~~~~~~-----~~~~~~~~~~p~~i~~d~~g~l~v~~~~---~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 177 EAESNNQ-----VVLPFTDITAPWGIAVDEAGTVYVTEHN---TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp CTTTCCE-----EECCCSSCCSEEEEEECTTCCEEEEETT---TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred ecCCCce-----EeecccCCCCceEEEECCCCCEEEEECC---CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 8754321 1111112 35788999999976666554 78999999886544332 222568899999999877
Q ss_pred EEEEccceeccccEEEEEecCce
Q 005140 571 ATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
++... ++.|+++++....
T Consensus 249 v~~~~-----~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 249 VADRG-----NDRVVKLTSLEHH 266 (270)
T ss_dssp EEEGG-----GTEEEEECCCGGG
T ss_pred EEECC-----CCEEEEEcCCCcc
Confidence 77666 8999999887543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-09 Score=104.98 Aligned_cols=275 Identities=9% Similarity=-0.009 Sum_probs=166.1
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
.+...+.+++++|+|+++++...++ +.+|+.. ........ ....+.+++++++|..+++...+ +.|
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~----------~~i 80 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA----------NKI 80 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT----------TEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC----------CeE
Confidence 3445678999999999887766444 8899887 32222222 23359999999999988887766 789
Q ss_pred EEEEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-cccccCe
Q 005140 288 NIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-SLKVENV 363 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-~~~~~~v 363 (712)
..|+.. ++. ..+..+ .... . .+.+.+ +|.++++.. ++.|.+|+. ++...... ......+
T Consensus 81 ~~~~~~-g~~-~~~~~~~~~~~~--------~-----~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 81 GRITKK-GII-KEYTLPNPDSAP--------Y-----GITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEECTT-SCE-EEEECSSTTCCE--------E-----EEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEECCC-CcE-EEEeCCCcCCCc--------e-----eeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999974 443 333221 1111 1 588899 998887766 789999998 44432111 1123458
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee-eeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ-KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
..++++|+|..++. ......|+.++. +.+.... ..........+.++++|...++....+
T Consensus 144 ~~i~~~~~g~l~v~-------~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~----------- 204 (299)
T 2z2n_A 144 SFITLGSDNALWFT-------ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN----------- 204 (299)
T ss_dssp EEEEECTTSCEEEE-------ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT-----------
T ss_pred ceEEEcCCCCEEEE-------eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc-----------
Confidence 89999999977665 223346777776 4332211 010112234567888888544332222
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFW 520 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~ 520 (712)
.++.+... .......+..+...+.+++++|+|+.+++...++ .|..|+.. +. +..+ .+. ...+.++++
T Consensus 205 ~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~d~~-g~----~~~~-~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 205 KIGRITTS-GEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN---KIGRLTSN-NI----IEEY-PIQIKSAEPHGICF 274 (299)
T ss_dssp EEEEECTT-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT---EEEEEETT-TE----EEEE-ECSSSSCCEEEEEE
T ss_pred eEEEECCC-CcEEEEECCCCCCCceeEEECCCCCEEEeccCCc---eEEEECCC-Cc----eEEE-eCCCCCCccceEEe
Confidence 23333332 2223344444557789999999998555543555 79999872 21 1122 222 235788899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
++|+++++.. .+.|..++..+.
T Consensus 275 -~~g~l~v~~~----~~~l~~~~~~~~ 296 (299)
T 2z2n_A 275 -DGETIWFAME----CDKIGKLTLIKD 296 (299)
T ss_dssp -CSSCEEEEET----TTEEEEEEEC--
T ss_pred -cCCCEEEEec----CCcEEEEEcCcc
Confidence 8888766654 466777776643
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=107.10 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=63.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++ +++|||||+|.+.++|.+|++.|||..++++
T Consensus 26 ~~~~l~V~nlp~------~~~~~~l~~~f~~~G~i~~--~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPH------FATEADLIPLFQNFGFILD--FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCT------TCCHHHHHHHHHTTSCCSE--EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCc------ccCHHHHHHHHHhCCCEEE--EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 468999999997 4458999999999999999 8887 4789999999999999999999999999885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 92 -~l~V~~ 97 (101)
T 2la4_A 92 -NLRTGW 97 (101)
T ss_dssp -ECCCCB
T ss_pred -EEEEEe
Confidence 666554
|
| >2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-12 Score=105.36 Aligned_cols=87 Identities=15% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCCEEEECCCCCC-----CchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 58 FGNIIVVDNLPVV-----PKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 58 ~~~~~~v~~lp~~-----~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
-+++|+|.||... ++++++.++++|+++|++||.|.+ +.| .|+ .++|||||+|.+.++|.+|++.|||.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~--v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK--LLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE--EEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE--EEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 5789999999533 345677899999999999999999 866 555 38999999999999999999999999
Q ss_pred ccCCceEEEEEeecccccc
Q 005140 133 KLDRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~~~~ 151 (712)
.++++ .+.|.......++
T Consensus 88 ~~~gr-~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGR-QITAQAWDGTTDY 105 (112)
T ss_dssp EETTE-ECEEEECCSCCCS
T ss_pred EECCc-EEEEEEeCCCCCc
Confidence 99985 8888886654444
|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-12 Score=110.44 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=63.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-ce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-AH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~~ 138 (712)
..|||+|||. +..+++|+++|++||.|.+ |.|..+ +++|||||+|.+.++|.+|++.|||..|.+ ..
T Consensus 47 l~l~VgNL~~------~vted~L~~~Fs~fG~V~~--V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFY------PVTLDVLHQIFSKFGTVLK--IITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCS------CCCHHHHHHHHHHHSCEEE--EEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCC------CCCHHHHHHHHHhcCCEEE--EEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 4789999997 4458899999999999999 988643 368999999999999999999999999964 24
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++|....
T Consensus 115 ~L~V~~Ak 122 (164)
T 1sjr_A 115 TLRIDFSK 122 (164)
T ss_dssp CEEEEECS
T ss_pred EEEEEEec
Confidence 78877644
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=115.90 Aligned_cols=78 Identities=29% Similarity=0.472 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++.+||..+.++
T Consensus 2 ~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~- 72 (167)
T 1fxl_A 2 KTNLIVNYLPQ------NMTQEEFRSLFGSIGEIES--CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK- 72 (167)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred cceEEEcCCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc-
Confidence 47999999997 4458899999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.+...
T Consensus 73 ~l~v~~~ 79 (167)
T 1fxl_A 73 TIKVSYA 79 (167)
T ss_dssp ECEEEEC
T ss_pred eEEEEec
Confidence 7777553
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=100.97 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=63.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~ 136 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++. ++|||||+|.+.++|.+|++.| ||..+++
T Consensus 11 ~~~~l~V~~l~~------~~t~~~l~~~f~~~G~i~~--~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 11 TITTLYVGGLGD------TITETDLRNHFYQFGEIRT--ITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SCCCEEEECCTT------TSCHHHHHHHHHTTSCEEE--EEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CccEEEEcCCCC------CCCHHHHHHHHHhCCCEeE--EEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 357999999997 4558999999999999999 99986 4799999999999999999999 9999988
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
+ .+.|..
T Consensus 77 ~-~l~v~~ 83 (85)
T 2ytc_A 77 R-RLNVKW 83 (85)
T ss_dssp E-ECCEEE
T ss_pred C-EEEEEe
Confidence 5 666654
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=133.37 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. .+.+..|.++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|+..|||..|+++
T Consensus 101 ~~~~lfV~nL~~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 101 AFKTLFVARVNY------DTTESKLRREFEVYGPIKR--IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHcCCeeE--EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 457999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.|.|....
T Consensus 173 -~i~V~~a~ 180 (437)
T 3pgw_S 173 -RVLVDVER 180 (437)
T ss_pred -EEEEEEeC
Confidence 78877643
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=116.43 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=70.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.++++|.+|++.+||..+.++
T Consensus 3 ~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~- 73 (168)
T 1b7f_A 3 NTNLIVNYLPQ------DMTDRELYALFRAIGPINT--CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK- 73 (168)
T ss_dssp CSEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred ccEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc-
Confidence 57999999997 4458899999999999999 99999998999999999999999999999999999999885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.+...
T Consensus 74 ~l~v~~~ 80 (168)
T 1b7f_A 74 RLKVSYA 80 (168)
T ss_dssp ECEEEEC
T ss_pred EEEEEec
Confidence 7776653
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=109.14 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET---QKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~---~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-+++|||+|||. +..+++|+++|++||.|. +.++.|+.+ |++||||||+|.++++|.+|++.|++ +
T Consensus 7 ~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~---~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~ 75 (114)
T 2dnl_A 7 GSRKVFVGGLPP------DIDEDEITASFRRFGPLV---VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E 75 (114)
T ss_dssp CCCCEEEECCCT------TCCHHHHHHHTTTTCCCC---EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E
T ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHhcCCEE---EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c
Confidence 357999999997 455899999999999986 478888877 79999999999999999999999843 4
Q ss_pred CCceEEEEE
Q 005140 135 DRAHIFAVN 143 (712)
Q Consensus 135 ~~~~~l~v~ 143 (712)
+++ .+.+.
T Consensus 76 ~G~-~~~~~ 83 (114)
T 2dnl_A 76 DGK-LYLCV 83 (114)
T ss_dssp TTE-EEEEE
T ss_pred CCc-EEEec
Confidence 553 44444
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-10 Score=110.83 Aligned_cols=236 Identities=9% Similarity=-0.011 Sum_probs=140.8
Q ss_pred ccceEEEcCCCcEEE-EEecCc-eEEeecccCcceee-eec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 215 TESFVQWSPLGTYLA-TVHRQG-AAVWGGANTFNRLM-RYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 215 ~v~~v~~Spdg~~la-t~~~~~-i~iw~~~~~~~~~~-~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
...+++++|+|++++ +...++ |.+|+.. +..... ... ...+.+++++|+|+.+++.. + +.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~----------~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG-STGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-N----------NRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-T----------TEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCC-CcccceEeeCCcCCcceeEECCCCCEEEEcC-C----------CEEEEE
Confidence 456799999999776 434444 8899876 333222 122 23588999999999666665 6 789999
Q ss_pred EccCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEE
Q 005140 291 DVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW 368 (712)
Q Consensus 291 d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 368 (712)
|..++. ...+.... ... + .+++++ +|+++++.. ++.|.+|+..+.............+.++++
T Consensus 93 d~~~~~-~~~~~~~~~~~p------------~-~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 93 AAGSNN-QTVLPFDGLNYP------------E-GLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp CTTCSC-CEECCCCSCSSE------------E-EEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred eCCCce-EeeeecCCcCCC------------c-ceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 975443 33332211 111 1 588999 998777765 889999975543322111122234678888
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEe
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK 448 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~ 448 (712)
+|+|+++++ ......|..++. ++.....
T Consensus 158 ~~~g~l~v~-------~~~~~~i~~~~~-----------------------~~~~~~~---------------------- 185 (270)
T 1rwi_B 158 DNSGNVYVT-------DTDNNRVVKLEA-----------------------ESNNQVV---------------------- 185 (270)
T ss_dssp CTTCCEEEE-------EGGGTEEEEECT-----------------------TTCCEEE----------------------
T ss_pred eCCCCEEEE-------ECCCCEEEEEec-----------------------CCCceEe----------------------
Confidence 888875543 111223433332 2211100
Q ss_pred cCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCCeE
Q 005140 449 ERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFI 527 (712)
Q Consensus 449 ~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l 527 (712)
. ...+...+.+++++|+|..+++...++ .|.+|+..+... ......+ ..+.+++++|+|+.+
T Consensus 186 --------~-~~~~~~~p~~i~~d~~g~l~v~~~~~~---~v~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 186 --------L-PFTDITAPWGIAVDEAGTVYVTEHNTN---QVVKLLAGSTTS-----TVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp --------C-CCSSCCSEEEEEECTTCCEEEEETTTS---CEEEECTTCSCC-----EECCCCSCSCEEEEEECTTCCEE
T ss_pred --------e-cccCCCCceEEEECCCCCEEEEECCCC---cEEEEcCCCCcc-----eeeccCCCCCceeEEECCCCCEE
Confidence 0 001124567899999996655554555 799998754321 1111112 357899999999877
Q ss_pred EEEeccCCCceEEEEECCccee
Q 005140 528 VLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 528 ~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++... ++.|.+|++...+.
T Consensus 249 v~~~~---~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 249 VADRG---NDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEGG---GTEEEEECCCGGGS
T ss_pred EEECC---CCEEEEEcCCCccc
Confidence 77666 89999999875443
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=101.78 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=63.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..++++
T Consensus 8 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSA------ACTSQELRSLFERRGRVIE--CDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CSCCEEEESCCT------TCCHHHHHHHHHHHSCEEE--EEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHcCCCEEE--EEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 457999999997 4458999999999999999 9887 34999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 72 -~l~v~~a~ 79 (90)
T 2dnp_A 72 -RINVELST 79 (90)
T ss_dssp -ECEEEESC
T ss_pred -EEEEEECC
Confidence 78877754
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-12 Score=113.86 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|.++|||||+|.+.++|.+|++.|||..++++
T Consensus 86 ~~~~l~v~nl~~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNV------NVDDETLRNAFKDFPSYLS--GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp TCEEEEEESCCT------TCCHHHHHHHHTTSTTEEE--EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCceEEECCCCC------CCCHHHHHHHHhccCCeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 467999999997 4448999999999999999 99999988999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 158 -~i~v~~a 164 (166)
T 3md3_A 158 -PLRINWA 164 (166)
T ss_dssp -ECEEEES
T ss_pred -EEEEEec
Confidence 7777653
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=112.32 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=66.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+.+|+++|++||.|.+ +.++.| ++|||||+|.+.++|.+|+..|||..+++
T Consensus 71 ~~~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~--v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGN------NGNKTELERAFGYYGPLRS--VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCS------CCSCHHHHHHHHHHSCEEE--EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhhCCEEE--EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568999999996 3447889999999999999 999987 68999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 138 ~-~l~v~~a 145 (150)
T 2i2y_A 138 C-RVRVELS 145 (150)
T ss_dssp S-CCEEEEC
T ss_pred e-EEEEEEc
Confidence 5 7777654
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-12 Score=116.68 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 94 ~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 164 (172)
T 2g4b_A 94 AHKLFIGGLPN------YLNDDQVKELLTSFGPLKA--FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK- 164 (172)
T ss_dssp TTCEEEECCCT------TCCHHHHHHHHHTTSCEEE--EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEEcCCC------cCCHHHHHHHHHhcCCceE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe-
Confidence 68999999997 4448999999999999999 99999988999999999999999999999999999999985
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 165 ~l~V~~ 170 (172)
T 2g4b_A 165 KLLVQR 170 (172)
T ss_dssp ECEEEE
T ss_pred EEEEEe
Confidence 777764
|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-12 Score=105.73 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=61.6
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCC-c
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGY-CFIEYNTPQEAELAKEKTNGYKLDR-A 137 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~-~fv~~~~~~~a~~a~~~~~~~~~~~-~ 137 (712)
-.|||+|||. ...+++|+++|++||.|.+ |.++.+ .+|| |||+|.+.++|.+|++.|||..+.+ +
T Consensus 29 L~I~V~NL~~------~vte~~L~~lFs~yG~V~~--V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 29 LRIIVENLFY------PVTLDVLHQIFSKFGTVLK--IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp EEEEEESCCS------CCCHHHHHHHHTTSSCEEE--EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred EEEEECCCCC------CCCHHHHHHHHhCcCCEEE--EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 3788999997 4448899999999999999 988753 3688 9999999999999999999999976 3
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++++...
T Consensus 96 ~~LrI~~a 103 (130)
T 3zzy_A 96 CTLRIDFS 103 (130)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 46766553
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-13 Score=117.01 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceE--EEecc---CCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGL--WMPVD---PETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~--~~~~d---~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
-+++|||+|||. ...+.+|+++|++||.|.. + .++.| ..+|+++|||||+|.+.++|.+|+..|||+
T Consensus 44 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~--~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 44 PNCRIYVKNLAK------HVQEKDLKYIFGRYVDFSS--ETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CCSEEEEEEECT------TCCHHHHHHHHGGGCCTTC--HHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCccc--ccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 468999999997 4458999999999999876 4 22333 238999999999999999999999999999
Q ss_pred ccCCceEEEEEee
Q 005140 133 KLDRAHIFAVNMF 145 (712)
Q Consensus 133 ~~~~~~~l~v~~~ 145 (712)
.++++ .+.|...
T Consensus 116 ~~~g~-~l~V~~a 127 (143)
T 3egn_A 116 VLFGK-PMVVQFA 127 (143)
T ss_dssp EETTE-ECEEEEC
T ss_pred EeCCc-EEEEEEC
Confidence 99985 7877764
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=101.44 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++| .|.. +.++ +++|||||+|.++++|.+|++.|||..++++
T Consensus 4 ~~~~l~V~nLp~------~~t~~~l~~~F~~~-~v~~--~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 68 (88)
T 1wg1_A 4 GSSGILVKNLPQ------DSNCQEVHDLLKDY-DLKY--CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68 (88)
T ss_dssp CCCCEEEESCCS------SCCHHHHHHHTCSS-CCCC--EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhhC-CeEE--EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 357899999997 44589999999999 9998 8884 6899999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 69 -~l~V~~a 75 (88)
T 1wg1_A 69 -DLIVQLQ 75 (88)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEEc
Confidence 7887763
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=102.34 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=63.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..++++
T Consensus 11 ~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~--v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~- 73 (103)
T 2dgu_A 11 VKVLFVRNLAN------TVTEEILEKAFSQFGKLER--VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGE- 73 (103)
T ss_dssp CCCEEEECCCT------TCCHHHHHHHHHHHSCEEE--EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCC-
Confidence 57999999997 4458999999999999999 8887 56999999999999999999999999985
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 74 ~l~v~~a~~ 82 (103)
T 2dgu_A 74 NIEIVFAKP 82 (103)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 888877543
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-12 Score=102.12 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=61.6
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. -.. +.+|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..+.+
T Consensus 9 ~~~~l~V~nlp~~~~t------~~~l~~~F~~~G~v~~--v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVS------KEDLFRIFSPYGHIMQ--INIK--------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCC------HHHHHHHHTTTCCCCE--EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCC------HHHHHHHHHhcCCEEE--EEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 467999999995 333 8889999999999999 8885 7999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 73 ~-~l~V~~a 80 (96)
T 2kvi_A 73 K-KLILEVS 80 (96)
T ss_dssp T-TBCEEEE
T ss_pred c-EEEEEEc
Confidence 6 6666554
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-12 Score=107.86 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=58.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.| |||||+|.+.++|++|++.|||+.++++
T Consensus 15 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPP------SGSWQDLKDHMREAGDVCY--ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCS------SCCTTHHHHHHGGGSCEEE--EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 4448889999999999999 999887 9999999999999999999999999886
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-08 Score=101.52 Aligned_cols=270 Identities=7% Similarity=-0.025 Sum_probs=164.7
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
..+.+++++|+|+.+++...+ +.|.+||.. +... .+.. +.... . .+++++ +|
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~----------~~v~~~d~~-~~~~-~~~~~~~~~~~--------~-----~i~~~~-~g 68 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKA----------NMISCINLD-GKIT-EYPLPTPDAKV--------M-----CLTISS-DG 68 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTT----------TEEEEECTT-CCEE-EEECSSTTCCE--------E-----EEEECT-TS
T ss_pred CCccceEECCCCCEEEEecCC----------CcEEEEcCC-CCeE-EecCCcccCce--------e-----eEEECC-CC
Confidence 458999999999988877666 789999976 5543 3221 11111 1 588899 99
Q ss_pred CEEEEec-CCeEEEEEcCCceeccccc--ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-ee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NL 407 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 407 (712)
.++++.. ++.|..|+.. +... ... .....+.+++++|+|.+++. ......|+.++. ........ ..
T Consensus 69 ~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-------~~~~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 69 EVWFTENAANKIGRITKK-GIIK-EYTLPNPDSAPYGITEGPNGDIWFT-------EMNGNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEE-------ETTTTEEEEECT-TCCEEEEECSS
T ss_pred CEEEeCCCCCeEEEECCC-CcEE-EEeCCCcCCCceeeEECCCCCEEEE-------ecCCceEEEECC-CCCEEEecCCC
Confidence 9887776 7889999876 3321 111 12345889999999887665 222346677776 33221111 00
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
.......+.+.++|...++....+ .++.++. ........+..+...+.+++++++|+.+++....+
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~-----------~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-- 204 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNN-----------AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN-- 204 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTT-----------EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--
T ss_pred CCCCCceEEEcCCCCEEEEeCCCC-----------EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc--
Confidence 112234567888886555433222 3444443 22222233434456788999999998665544455
Q ss_pred CeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 562 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~ 562 (712)
.|.+|+. ++.. .. ..+. ...+.+++++++|+.+++... ++.|..||.. +..... .+...+.+++
T Consensus 205 -~i~~~~~-~g~~----~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 205 -KIGRITT-SGEI----TE-FKIPTPNARPHAITAGAGIDLWFTEWG---ANKIGRLTSN-NIIEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp -EEEEECT-TCCE----EE-EECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEEETT-TEEEEEECSSSSCCEEEEE
T ss_pred -eEEEECC-CCcE----EE-EECCCCCCCceeEEECCCCCEEEeccC---CceEEEECCC-CceEEEeCCCCCCccceEE
Confidence 7999987 4331 12 1222 235789999999986665544 7899999984 443221 2235688899
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+ ++|+..++... +.+..++...
T Consensus 274 ~-~~g~l~v~~~~------~~l~~~~~~~ 295 (299)
T 2z2n_A 274 F-DGETIWFAMEC------DKIGKLTLIK 295 (299)
T ss_dssp E-CSSCEEEEETT------TEEEEEEEC-
T ss_pred e-cCCCEEEEecC------CcEEEEEcCc
Confidence 9 88886555433 5666666553
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=100.75 Aligned_cols=72 Identities=25% Similarity=0.363 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhcc--CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI--GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~--g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-.++|||+|||. ...+.+|+++|++| |.|.. +.++ +|||||+|.+.++|.+|++.|||..++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~g~g~v~~--~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 14 SVKILYVRNLML------STSEEMIEKEFNNIKPGAVER--VKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHHTTSTTCEEE--EEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CcCEEEEeCCCC------CCCHHHHHHHHHhcCCcceEE--EEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 457999999997 44588999999999 99988 7764 689999999999999999999999998
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 78 g~-~l~v~~a~ 87 (99)
T 2cpd_A 78 GS-PIEVTLAK 87 (99)
T ss_dssp TE-EEEEECCC
T ss_pred Cc-EEEEEECC
Confidence 85 88887654
|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.5e-12 Score=99.04 Aligned_cols=71 Identities=13% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD-R 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~-~ 136 (712)
-.++|||+|||. +..+++|+++|++||.|.+ +.|+.| +||||||+|.+.++|.+ ++|..+. +
T Consensus 10 ~~~~l~V~~Lp~------~~te~~L~~~F~~~G~i~~--v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~ 72 (89)
T 3d2w_A 10 HGSKVFVGRCTE------DMTAEELQQFFCQYGEVVD--VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIK 72 (89)
T ss_dssp -CCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhccCCEEE--EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccC
Confidence 467999999998 5559999999999999999 999985 89999999999999983 6776554 2
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
.+.+.|...
T Consensus 73 g~~v~v~~a 81 (89)
T 3d2w_A 73 GISVHISNA 81 (89)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEEc
Confidence 246776654
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-12 Score=100.91 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=62.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhcc----C-------eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHH
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI----G-------VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAK 126 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~ 126 (712)
-.++|||+|||. +..+++|+++|++| | .|.+ +.++.+ +|||||+|.+.++|.+|+
T Consensus 5 ~~~~l~V~nLp~------~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--~~~~~~------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPF------GITEEAMMDFFNAQMRLGGLTQAPGNPVLA--VQINQD------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCT------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--EEECSS------SSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHhhhcccccCCCCcceE--EEecCC------CcEEEEEcCCHHHHHHHH
Confidence 357999999997 44589999999999 8 8988 888865 799999999999999999
Q ss_pred HHhCCCccCCceEEEEEe
Q 005140 127 EKTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 127 ~~~~~~~~~~~~~l~v~~ 144 (712)
.|||..++++ .+.|.+
T Consensus 71 -~l~g~~~~g~-~l~V~r 86 (87)
T 2hzc_A 71 -AFDGIIFQGQ-SLKIRR 86 (87)
T ss_dssp -GGTTCEETTE-ECEEEC
T ss_pred -hcCCCEECCe-EEEEeC
Confidence 9999999985 777764
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-12 Score=116.23 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..++.|+++|++||.|.. |.|+.|. +|+++|||||+|++.++|.+|++.++ ..++|+
T Consensus 108 ~~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~--v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr 177 (193)
T 2voo_A 108 KNRSVYIKGFPT------DATLDDIKEWLEDKGQVLN--IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKET 177 (193)
T ss_dssp HHTEEEEECCCT------TCCHHHHHHHHTTSCCEEE--EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTE
T ss_pred ccCEEEecCCCC------cCCHHHHHHHHhcCCCEEE--EEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCE
Confidence 358999999997 4558999999999999999 9999998 69999999999999999999998665 478885
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|....+
T Consensus 178 -~l~V~~~~~ 186 (193)
T 2voo_A 178 -DLLILFKDD 186 (193)
T ss_dssp -ECEEEETTT
T ss_pred -EEEEEEhHH
Confidence 777776444
|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=103.99 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=60.3
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCc-e
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGY-CFIEYNTPQEAELAKEKTNGYKLDRA-H 138 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~-~fv~~~~~~~a~~a~~~~~~~~~~~~-~ 138 (712)
.|||+|||. ...+++|+++|++||.|.+ |.|+. + .|| |||+|.+.++|.+|++.|||..|.++ .
T Consensus 27 ~l~V~NL~~------~vt~~~L~~~Fs~yG~V~~--v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 27 LLSIQNPLY------PITVDVLYTVCNPVGKVQR--IVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp EEEEESCCS------CCCHHHHHHHHTTTSCEEE--EEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred EEEEcCcCC------CCCHHHHHHHHHhcCCEEE--EEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 578999997 4448899999999999999 98864 2 286 99999999999999999999999763 4
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.++|...
T Consensus 93 ~l~V~~A 99 (124)
T 2e5i_A 93 TLKIEYA 99 (124)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 7887754
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=99.36 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..+.++
T Consensus 9 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 9 ASTKLHVGNISP------TCTNQELRAKFEEYGPVIE--CDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp SSEEEEEESCCS------SCCHHHHHHHHHTTSCCCE--EEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 457999999997 4458999999999999999 9887 34999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 73 -~l~V~~a~ 80 (92)
T 2dgt_A 73 -RMHVQLST 80 (92)
T ss_dssp -EEEEEESS
T ss_pred -EEEEEEcc
Confidence 88888754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-10 Score=115.31 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=122.6
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcc-----------eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFN-----------RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~-----------~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
.++.+++|+.+.+|++++.++++||+.. ... ......++.|..++| |+++|+++ .+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~-~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~--------- 105 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQ-LLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TR--------- 105 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHH-HHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ES---------
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhh-HhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cC---------
Confidence 6889999999999999999999999866 332 223344556999999 99999998 66
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCe
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
+.|++||+.+.........+...+. .+.+.+ . ++++...||.|.+|++.++.... ...+|
T Consensus 106 -~~l~v~dv~sl~~~~~~~~~~~~v~-------------~i~~~~-p-~~av~~~dG~L~v~dl~~~~~~~----~~~~V 165 (388)
T 1xip_A 106 -NALYSLDLEELSEFRTVTSFEKPVF-------------QLKNVN-N-TLVILNSVNDLSALDLRTKSTKQ----LAQNV 165 (388)
T ss_dssp -SEEEEEESSSTTCEEEEEECSSCEE-------------EEEECS-S-EEEEEETTSEEEEEETTTCCEEE----EEESE
T ss_pred -CcEEEEEchhhhccCccceeeccee-------------eEEecC-C-CEEEEECCCCEEEEEccCCcccc----ccCCc
Confidence 7899999876654444444433331 456666 4 24444449999999999776542 34679
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC---ccceeeee------eeeecceeEEECcCCCEEEEEEcc
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS---KEELRQKN------LFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~------~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.+++|||+| +++ +..++.++++..+... ...+.... .+......+.|.+++.++++....
T Consensus 166 s~v~WSpkG--~~v-----g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 166 TSFDVTNSQ--LAV-----LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp EEEEECSSE--EEE-----EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred eEEEEcCCc--eEE-----EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence 999999999 344 4488888877655433 21221100 123456678999999998876553
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-09 Score=106.92 Aligned_cols=240 Identities=12% Similarity=0.126 Sum_probs=149.2
Q ss_pred CCeeEEEecCCCCEEEE-------EcCCCCCCCcCCCccEEEEEEccCCceeeecc----CCCcccccCCCCCcCCCCcC
Q 005140 254 PQVKLIDFSPGEKYLVT-------YSSHEPSNPRDANRVVINIFDVRTGKVMRDFK----GSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t-------~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 322 (712)
....+++|+++|+.+++ ...+ +.|.+||..+++...... ++.... .
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~~--------~----- 74 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPA----------GEILRIDLKTGKKTVICKPEVNGYGGIP--------A----- 74 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEEC----------CEEEEECTTTCCEEEEECCEETTEECCE--------E-----
T ss_pred CCccCceECCCCCEEEEEeccccCCCCC----------CEEEEEeCCCCcEEEEEecccCCCCCCC--------c-----
Confidence 34789999999987777 3445 689999987877543221 011111 1
Q ss_pred eEEecCCC-CCEEEEecCCeEEEEEcCCceeccc-cc----ccccCeeeEEECCCCCeEEEEeecCCCCCC---------
Q 005140 323 VFRWGGGK-DKYFAKLGKNMISVYETESFTLIDK-KS----LKVENVMDFSWSPTDPIISLFVPELGGGNQ--------- 387 (712)
Q Consensus 323 ~~~~s~~d-g~~la~~~d~~i~iwd~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~--------- 387 (712)
.+.+++ + |+++++...+.|.+|+.. ++.... .. .....+.+++++|+|++++. ...+.
T Consensus 75 ~i~~~~-~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-----~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 75 GCQCDR-DANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT-----APAGEVAPADYTRS 147 (314)
T ss_dssp EEEECS-SSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE-----ECBCBCTTSCCCBT
T ss_pred eEEEec-CCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEE-----ecCccccccccccc
Confidence 588999 8 776666666689999987 554321 11 11234788999999876654 11111
Q ss_pred ----CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 388 ----PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 388 ----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
...|+.+ .++|.... +..+.
T Consensus 148 ~~~~~~~l~~~-----------------------~~~g~~~~---------------------------------~~~~~ 171 (314)
T 1pjx_A 148 MQEKFGSIYCF-----------------------TTDGQMIQ---------------------------------VDTAF 171 (314)
T ss_dssp TSSSCEEEEEE-----------------------CTTSCEEE---------------------------------EEEEE
T ss_pred ccCCCCeEEEE-----------------------CCCCCEEE---------------------------------eccCC
Confidence 1222222 22221100 00112
Q ss_pred CceEEEEEe----eCCCEEEEEEc-CCCCCeEEEEEeec-ccccCceeEEEEeCC---CceeEEEEccCCCeEEEEeccC
Q 005140 464 DKIIAFAWE----PKGHRFAVIHG-DSPRPDISFYSMRT-AQHAGRVSKLTTLKG---KQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 464 ~~v~~~~~s----p~g~~l~~~~~-d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~~~~~~~ 534 (712)
.....++|+ |+|+.++++.. ++ .|.+|++.. +.. .....+..+.. .....++++++|+++++...
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~---~i~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-- 245 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTK---KLWSYDIKGPAKI-ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-- 245 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTT---EEEEEEEEETTEE-EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--
T ss_pred CCcceEEEecccCCCCCEEEEEECCCC---eEEEEECCCCCcc-ccceEEEECCCCCCCCCCceEECCCCCEEEEEcC--
Confidence 345678999 99987776654 45 899999862 211 01112333332 34678999999988777655
Q ss_pred CCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 535 FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++.|.+||..+++.+.. .+...+.+++++|+|++|..++.. ++.|..|++.
T Consensus 246 -~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~----~~~l~~~~~~ 298 (314)
T 1pjx_A 246 -SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE----NNAVWKFEWQ 298 (314)
T ss_dssp -TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT----TTEEEEEECS
T ss_pred -CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC----CCeEEEEeCC
Confidence 78999999986665443 334678899999999977666652 5788888876
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-12 Score=100.93 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.+ | +.|+.+|+ ||||+|.+.++|.+|++ |||..++++
T Consensus 8 ~~~l~V~nl~~------~~t~~~l~~~F~~~G~v~~--v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~- 72 (94)
T 2e5g_A 8 LRSVFVSGFPR------GVDSAQLSEYFLAFGPVAS--V--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH- 72 (94)
T ss_dssp CCEEEEECCCT------TCCHHHHHHHGGGTSCEEE--E--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--E--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE-
Confidence 46999999997 4558999999999999988 6 77877776 99999999999999999 999999985
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 73 ~l~V~~ 78 (94)
T 2e5g_A 73 RLRVRP 78 (94)
T ss_dssp ECCCBC
T ss_pred EEEEEE
Confidence 676653
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-12 Score=104.19 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=63.0
Q ss_pred CCCEEEECCCCCCCchhhh-hhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFE-KLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~-~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.+++|||+|||. . ..+++|+++|++||.|.. |.+ ++|||||+|.+.++|.+|++.|||..+++
T Consensus 26 ~~~~l~V~nl~~------~~~t~~~l~~~F~~~G~v~~--v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 26 INSRVFIGNLNT------ALVKKSDVETIFSKYGRVAG--CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CSSEEEECSCCC------SSCCHHHHHHHHGGGSCCSE--EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCc------ccCCHHHHHHHHHhCCCeEE--EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467999999997 3 448999999999999999 888 68999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 90 ~-~l~V~~a 97 (110)
T 1wf1_A 90 Q-TLDINMA 97 (110)
T ss_dssp E-ECCEEES
T ss_pred e-EEEEEEC
Confidence 5 7777664
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-12 Score=102.71 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=66.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceE-EEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGL-WMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~-~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+.+|+++|++||.|.. + .++.|+.+|. |||+|.+.++|.+|++.|||..+++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPP------HLQWEVLDSLLVQYGVVES--CEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECS------SSCHHHHHHHHHHHSCEEE--EEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCC------CCCHHHHHHHHHhcCCeEE--EEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECC
Confidence 357999999997 4558999999999999999 9 6999985554 9999999999999999999999998
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 82 ~-~l~V~~a~~ 91 (96)
T 2e44_A 82 F-TLKVAYIPD 91 (96)
T ss_dssp C-BCEEEECCC
T ss_pred c-EEEEEEcCc
Confidence 5 788876543
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=117.32 Aligned_cols=80 Identities=28% Similarity=0.350 Sum_probs=72.5
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||.|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 123 ~~~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 123 RAFNRIYVASVHQ------DLSDDDIKSVFEAFGKIKS--ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp TTSCEEEEECCCT------TCCHHHHHHHHTTSSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCcEEEEeCCCC------cCCHHHHHHHHhccCCeeE--EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 3568999999997 4458999999999999999 9999999899999999999999999999999999999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 195 ~-~i~V~~a 202 (216)
T 2qfj_A 195 Q-YLRVGKA 202 (216)
T ss_dssp S-BCEEEEC
T ss_pred c-EEEEEEe
Confidence 6 7777653
|
| >1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-12 Score=102.08 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHh-hccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEe
Q 005140 75 FEKLEGVIRKIY-SQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 75 ~~~~~~~l~~~f-~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~ 144 (712)
++.++++|++.| ++||.|.+ +.++.|+ +|+++|||||+|.++++|.+|++.|||..++++ .+.|..
T Consensus 36 f~~~~edl~~~f~~~~G~V~~--v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr-~i~v~~ 102 (104)
T 1jmt_A 36 YDEFFEEVFTEMEEKYGEVEE--MNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ-PIHAEL 102 (104)
T ss_dssp HHHHHHHHHHHHHHHTCCEEE--EEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE-ECCEEE
T ss_pred HHHHHHHHHHHhhccCCceEE--EEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCE-EEEEEE
Confidence 345667777888 99999999 9999998 589999999999999999999999999999986 666543
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=97.82 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=62.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|| .++ +++|+++|++||.|.. |.|+ +++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~n~-~~t-------~~~l~~~F~~~G~i~~--v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE-DMT-------PTLLRGAFSPFGNIID--LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCSEEEEECS-SCC-------HHHHHHHHTTTSCEEE--EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEcCC-CCC-------HHHHHHHHhhCCCEEE--EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4579999996 333 7889999999999999 8884 6789999999999999999999999999884
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 78 -~l~v~~a~ 85 (97)
T 1x5p_A 78 -QLKVNIAR 85 (97)
T ss_dssp -EEEEECCS
T ss_pred -EEEEEECC
Confidence 88887644
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9.5e-12 Score=118.71 Aligned_cols=79 Identities=30% Similarity=0.393 Sum_probs=68.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+.++
T Consensus 27 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYY------ELGEDTIRQAFAPFGPIKS--IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCC------CCCHHHHHHHHHhCCCEEE--EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 467999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 99 -~l~v~~~ 105 (216)
T 2qfj_A 99 -NIKVGRP 105 (216)
T ss_dssp -CCEEECC
T ss_pred -eEEEecC
Confidence 6777543
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=111.82 Aligned_cols=78 Identities=29% Similarity=0.305 Sum_probs=69.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-++.|+|+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 87 ~~~~l~v~nl~~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPK------TMTQKELEQLFSQYGRIIT--SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCC------cCCHHHHHHHHHhcCCEeE--EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 467999999997 4448899999999999999 99999998999999999999999999999999999999886
Q ss_pred e-EEEEE
Q 005140 138 H-IFAVN 143 (712)
Q Consensus 138 ~-~l~v~ 143 (712)
. .+.|.
T Consensus 159 ~~~i~v~ 165 (167)
T 1fxl_A 159 TEPITVK 165 (167)
T ss_dssp SSCCEEE
T ss_pred ccceEEE
Confidence 2 45544
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=111.55 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=69.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-+++|+|+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 87 ~~~~~l~v~nl~~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPR------TITDDQLDTIFGKYGSIVQ--KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCT------TCCHHHHHHHHTSSSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCC------CCCHHHHHHhhhcCCcEEE--EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 3467999999997 4448899999999999999 9999999899999999999999999999999999999965
Q ss_pred -ceEEEEE
Q 005140 137 -AHIFAVN 143 (712)
Q Consensus 137 -~~~l~v~ 143 (712)
.+.+.|.
T Consensus 159 ~~~~l~V~ 166 (168)
T 1b7f_A 159 GSQPLSVR 166 (168)
T ss_dssp CSSCCEEE
T ss_pred CCeEEEEE
Confidence 2366654
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-12 Score=114.24 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++ +||..++++
T Consensus 86 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 86 KTGKIFVGGIGP------DVRPKEFEEFFSQWGTIID--AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HCEEEEEEEECT------TCCHHHHHHHHHTTSCCSE--EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred CCCeEEECCCCC------CCCHHHHHHHHHhCccEEE--EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 356999999997 4458899999999999999 9999999899999999999999999999998 899999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 157 -~i~V~~a 163 (167)
T 2cjk_A 157 -KIEIKRA 163 (167)
T ss_dssp -CEEEEEC
T ss_pred -EEEEeec
Confidence 7777764
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=6e-12 Score=101.71 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=61.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe-eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV-IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG-YKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~-v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~-~~~~ 135 (712)
-.++|||+|||. +..+++|+++|++||. |.. +.+ .++|||||+|.+.++|.+|++.||| ..++
T Consensus 7 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~vv~~--~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 7 GMNKLYIGNLSP------AVTADDLRQLFGDRKLPLAG--QVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCEEEECCCT------TCCHHHHHHHHHHTTCCCSS--CEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHcCCceEE--EEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 346999999997 4558999999999999 555 555 3689999999999999999999999 8998
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 72 g~-~l~v~~a~ 81 (93)
T 2cqh_A 72 GK-IMEVDYSV 81 (93)
T ss_dssp TE-ECEEEECC
T ss_pred CE-EEEEEEcc
Confidence 85 78877643
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=116.28 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=73.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 112 ~~~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPN------YLNDDQVKELLTSFGPLKA--FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCT------TCCHHHHHHHHHTBSCEEE--EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHHcCCccE--EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999997 4448899999999999999 9999999899999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 184 ~-~l~v~~a~ 192 (198)
T 2yh0_A 184 K-KLLVQRAS 192 (198)
T ss_dssp E-ECEEEESC
T ss_pred E-EEEEEECC
Confidence 5 77777643
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=115.67 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.+.++|.+|++. +|..++++
T Consensus 12 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSF------ETTDESLRSHFEQWGTLTD--CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 456999999997 4458999999999999999 99999999999999999999999999999986 88888885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.+...
T Consensus 83 -~l~v~~~ 89 (196)
T 1l3k_A 83 -VVEPKRA 89 (196)
T ss_dssp -ECEEEEC
T ss_pred -Eeeeecc
Confidence 6666654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-10 Score=127.08 Aligned_cols=254 Identities=9% Similarity=0.058 Sum_probs=153.2
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.+..++|||||++||.+.... +.....|++||+.+|+.+.... +.... ..++|+ ||+.|
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~-----G~~~~~i~v~dl~tg~~~~~~~-~~~k~-------------~~~~Ws--Dg~~l 188 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA-----GSDWREIHLMDVESKQPLETPL-KDVKF-------------SGISWL--GNEGF 188 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS-----SCCEEEEEEEETTTCSEEEEEE-EEEES-------------CCCEEE--TTTEE
T ss_pred EEEEEEECCCCCEEEEEEecC-----CCceEEEEEEECCCCCCCcccc-CCcee-------------ccEEEe--CCCEE
Confidence 478899999999999765431 1112689999999998755311 11100 046888 66767
Q ss_pred EEec-CC-------------eEEEEEcCCceecccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 335 AKLG-KN-------------MISVYETESFTLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 335 a~~~-d~-------------~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
+.+. +. .|.+|++.+......... +...+..+.|||||++|++.... ......||+++
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d 265 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN---STSGNRLYVKD 265 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES---SSSCCEEEEEE
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc---CCCCcEEEEEE
Confidence 6665 42 388999876543221111 12236788999999998874321 22335889998
Q ss_pred cCCcc-ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEee
Q 005140 396 IPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp 473 (712)
+.... .............. .|+++|..|++.+.... ....|+.++..+... ....+..|...+. .|+|
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDA-------PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS 335 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC-------TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred CCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCC-------CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence 76542 22222111111222 37888888888766432 123566555433211 1123445565555 8999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CC-CceeEEEEccCCCeEEEEecc-CCCceEEEEECCccee
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KG-KQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELET 549 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~-~~v~~l~~spdg~~l~~~~~~-~~dg~v~iwd~~~~~~ 549 (712)
++++|++...++....|++|++.++ ....+ +. ..+..+.++|+++.|++...+ ...+.|+.||+.+++.
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g~-------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEGK-------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTSC-------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCEEEEEEEECCeeEEEEEECCCC-------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 9999998887554447888887532 22222 22 346677888999887766541 1248899999876653
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=112.40 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR- 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~- 136 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 94 ~~~~l~v~nl~~------~~t~~~l~~~F~~~G~i~~--v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISK------KCTENDIRVMFSSFGQIEE--CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCC------cCCHHHHHHHHHhCCCEEE--EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 467999999997 4458899999999999999 9999997 79999999999999999999999999987754
Q ss_pred -ceEEEEEe
Q 005140 137 -AHIFAVNM 144 (712)
Q Consensus 137 -~~~l~v~~ 144 (712)
.+.+.|..
T Consensus 165 ~~~~l~V~~ 173 (175)
T 3nmr_A 165 CSSPMVVKF 173 (175)
T ss_dssp CSSCCEEEE
T ss_pred CCCCeEEEe
Confidence 24666654
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=116.46 Aligned_cols=79 Identities=28% Similarity=0.309 Sum_probs=69.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-..+|||+|||. ...+++|+++|++||.|.. +.|+.|+ +.+||||||+|.+.++|.+|++.|||..++++
T Consensus 102 ~~~~l~v~nl~~------~~t~~~l~~~F~~~G~i~~--~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 102 GVGNIFIKNLDK------SIDNKALYDTFSAFGNILS--CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CTTEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccceECCccc------ccHHHHHHHHHhhcCCeEE--EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 356899999997 4458999999999999999 9999996 55899999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 172 -~i~V~~a~~ 180 (213)
T 4f02_A 172 -KVFVGRFKS 180 (213)
T ss_dssp -ECEEEECCC
T ss_pred -EEEEEEcCC
Confidence 888876543
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=111.95 Aligned_cols=76 Identities=24% Similarity=0.489 Sum_probs=67.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.+ +.++.|+ +|+++|||||+|.+.++|.+|++.+||..+.++ .
T Consensus 1 R~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~ 70 (166)
T 3md3_A 1 RVLYVGNLDK------AITEDILKQYFQVGGPIAN--IKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENN-I 70 (166)
T ss_dssp CEEEEEEEET------TCCHHHHHHHHGGGSCEEE--EEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE-E
T ss_pred CEEEECCCCC------cCCHHHHHHHHHhcCCeEE--EEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC-e
Confidence 4799999997 4558999999999999999 9999998 688999999999999999999999999999885 7
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
+.+...
T Consensus 71 i~v~~~ 76 (166)
T 3md3_A 71 VKINWA 76 (166)
T ss_dssp CEEEEC
T ss_pred eEEEEc
Confidence 777654
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=114.58 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=65.2
Q ss_pred CCEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+||| . ...++.|+++|++||.|.+ |.++.| .+|||||+|.++++|.+|++.|||..+.++
T Consensus 4 ~~~l~V~nL~~~------~~~~~~L~~~F~~~G~v~~--v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 4 SPVLMVYGLDQS------KMNCDRVFNVFCLYGNVEK--VKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CSEEEEECCCTT------TCCHHHHHHHHTTTSCEEE--EEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCcc------cCCHHHHHHHHHhcCCeEE--EEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 5799999999 6 3448899999999999999 999876 379999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 71 -~l~v~~s~ 78 (205)
T 3tyt_A 71 -KMNVCVSK 78 (205)
T ss_dssp -ECEEEECS
T ss_pred -eEEEEEcc
Confidence 78877543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-09 Score=123.59 Aligned_cols=251 Identities=8% Similarity=0.041 Sum_probs=151.3
Q ss_pred eEEecCCCCCEEEEec------CCeEEEEEcCCceecccccccccCe--eeEEECCCCCeEEEEeecCCC------CCCC
Q 005140 323 VFRWGGGKDKYFAKLG------KNMISVYETESFTLIDKKSLKVENV--MDFSWSPTDPIISLFVPELGG------GNQP 388 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~------d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~la~~~~~~~~------~~~~ 388 (712)
.++||| ||++||.+. ...|++||+.+++.+.. +...+ ..++|+ ||+.|++....... ....
T Consensus 133 ~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 133 QLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 579999 999998654 25799999999876532 33333 678999 99999885432200 0345
Q ss_pred eEEEEEecCCccc----eeeeee-eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 389 ARVSLVQIPSKEE----LRQKNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 389 ~~i~~~~~~~~~~----~~~~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
..|+++++.+... +..... .......+.|+|+|++|++....... . ..+|.++..+.......+..+.
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-----~--~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS-----G--NRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS-----C--CEEEEEETTSTTCCCEEEECSS
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC-----C--cEEEEEECCCCCCceEEEeCCC
Confidence 6789988876532 211111 12223567899999999887654321 1 2444444322211123344445
Q ss_pred CceEEEEEeeCCCEEEEEEcC-CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 464 DKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
...... |+++|..|++.+.. ++...|..+++.++.. ..+..+..- ...+. .|+|+|++|++....+....|++|
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~-~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPE-RQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECC-CSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecC-CCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 555554 78888888877763 3344788888865432 112222211 22232 999999999887652222378999
Q ss_pred ECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 543 NVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 543 d~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++.++..... .....+..+.++|+++.|+....+ ....+.++.|++.+
T Consensus 356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss-~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFEN-YAQPPTLYRFEPKS 405 (693)
T ss_dssp CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEEC-SSSCCEEEEECTTT
T ss_pred ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecC-CCCCCEEEEEECCC
Confidence 9985543222 234567788899999877766552 01136777777653
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=111.93 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=63.4
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQ--KSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~--~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+| +++|||||+|.+.++|.+|++.|||..+.
T Consensus 3 ~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 3 AIKMFVGQVPR------TWSEKDLRELFEQYGAVYE--INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred ceEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 56999999997 4558999999999999999 9999999777 89999999999999999999999998764
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=113.36 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=70.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+.. +|..++++
T Consensus 103 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 103 TVKKIFVGGIKE------DTEEHHLRDYFEQYGKIEV--IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH 173 (196)
T ss_dssp CCSEEEEECCTT------TCCHHHHHHHHTTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE
T ss_pred CcceEEEeCCCC------CCCHHHHHHHHhcCCCeEE--EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE
Confidence 347999999997 4458999999999999999 99999998999999999999999999999986 89999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 174 -~i~v~~a~ 181 (196)
T 1l3k_A 174 -NCEVRKAL 181 (196)
T ss_dssp -ECEEEECC
T ss_pred -EEEEEecC
Confidence 77777644
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=111.76 Aligned_cols=74 Identities=19% Similarity=0.392 Sum_probs=63.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.+.++|.+|++. +..++++
T Consensus 3 ~~~l~v~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~- 71 (167)
T 2cjk_A 3 SCKMFIGGLNW------DTTEDNLREYFGKYGTVTD--LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK- 71 (167)
T ss_dssp GGEEEECSCCT------TCCHHHHHHHHTTTCCEEE--EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE-
T ss_pred CcEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe-
Confidence 56999999997 4558999999999999999 99999998999999999999999999999994 4556664
Q ss_pred EEEEE
Q 005140 139 IFAVN 143 (712)
Q Consensus 139 ~l~v~ 143 (712)
.+.+.
T Consensus 72 ~i~v~ 76 (167)
T 2cjk_A 72 VIDPK 76 (167)
T ss_dssp ECCCE
T ss_pred Ecccc
Confidence 44433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=111.27 Aligned_cols=287 Identities=8% Similarity=-0.080 Sum_probs=158.4
Q ss_pred ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC-cccccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGT 313 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~-~~~~~~~~ 313 (712)
.+.+.|.. +++.+.++....-..+.+||||++|+++.........+...+.|.+||+.+++.++++..+. .... . .
T Consensus 47 ~vsvID~~-t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-~-g 123 (368)
T 1mda_H 47 ENWVSCAG-CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-V-G 123 (368)
T ss_dssp EEEEEETT-TTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-B-S
T ss_pred eEEEEECC-CCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-c-C
Confidence 45689999 88988888643312899999999998886210000000111789999999999999986441 0000 0 0
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec---CCeEEE--EEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISV--YETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~i--wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
..+. .+.+|| ||++++.+. ++.+.+ +|+.+ +.. +..++. +...|++....+
T Consensus 124 ~~P~-----~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~--i~v~~~--~~~~p~g~~~~~----------- 179 (368)
T 1mda_H 124 PRVH-----IIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQL--TKSASC--FHIHPGAAATHY----------- 179 (368)
T ss_dssp CCTT-----SEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEE--EECSSC--CCCEEEETTEEE-----------
T ss_pred CCcc-----eEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceE--EECCCc--eEEccCCCeEEE-----------
Confidence 0011 589999 999888775 467888 88775 111 111111 122333332222
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc-----cccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR-----YTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
..+++|+.+.+.... +. .++... .. +.+ ..
T Consensus 180 ---------------------------~~~~dg~~~~vd~~~~~~~~~~----------v~~~~t-~~-----i~v--g~ 214 (368)
T 1mda_H 180 ---------------------------LGSCPASLAASDLAAAPAAAGI----------VGAQCT-GA-----QNC--SS 214 (368)
T ss_dssp ---------------------------CCCCTTSCEEEECCSSCCCCEE----------CCCCSC-TT-----SCB--CS
T ss_pred ---------------------------EEcCCCCEEEEECccccccCCe----------EEEEee-ee-----eeC--CC
Confidence 112333322221111 00 000000 00 000 02
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------C---CceeEEEEccCCCeEEEEe
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------G---KQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~---~~v~~l~~spdg~~l~~~~ 531 (712)
.+. + ++++..++..+. + .|.+.|+.+... ..+..+. + .....++++|+|+.++++.
T Consensus 215 ~P~---~-~~~~~~~~~vs~-~---~V~viD~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 215 QAA---Q-ANYPGMLVWAVA-S---SILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCE---E-ETTTTEEEECBS-S---CCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred Ccc---c-cccCCEEEEEcC-C---EEEEEECCCCcc----eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 232 3 666676666666 5 788888754221 1222211 0 0122378999999988764
Q ss_pred ccC-C-----CceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEc-cceeccccEEEEEecC-ceeeeecc-cc
Q 005140 532 LKG-F-----NGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVT-SVHEMENGFNIWSFNG-KLLYRTLK-DH 601 (712)
Q Consensus 532 ~~~-~-----dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~-~~~~~d~~v~iw~~~g-~~~~~~~~-~~ 601 (712)
... . .+.+.++|+.+++.+..... .....++|+|||++++++.. . ++.|.++|... +.+..... ..
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~----~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG----TEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEESSSCEEEEECCCCSC
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC----CCeEEEEECCCCcEEEEEECCCC
Confidence 301 0 12455999999998877543 35789999999985444443 2 79999999874 44444433 34
Q ss_pred eeeeEEec
Q 005140 602 FFQFLWRP 609 (712)
Q Consensus 602 i~~~~w~p 609 (712)
.+.+++.+
T Consensus 359 P~~i~~~~ 366 (368)
T 1mda_H 359 PESLSVQN 366 (368)
T ss_dssp CCEEECCC
T ss_pred CCEEEeec
Confidence 55555543
|
| >3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-11 Score=98.50 Aligned_cols=82 Identities=7% Similarity=0.069 Sum_probs=69.3
Q ss_pred CCEEEECCCCCCCc----hhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 59 GNIIVVDNLPVVPK----EKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~----~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
+++|++.|+=...+ +-++-++++|++.|++||.|.+ +.++.+. ++|||||+|.+.++|.+|++.|||..+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~--v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH--IYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE--EEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE--EEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56889999864332 2467799999999999999999 9998764 599999999999999999999999999
Q ss_pred CCceEEEEEeecc
Q 005140 135 DRAHIFAVNMFDD 147 (712)
Q Consensus 135 ~~~~~l~v~~~~~ 147 (712)
+|+ .+.|.....
T Consensus 81 ~GR-~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGK-MITAAYVPL 92 (114)
T ss_dssp TTE-ECEEEEECH
T ss_pred CCE-EEEEEEEcH
Confidence 996 888877654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-09 Score=110.34 Aligned_cols=288 Identities=8% Similarity=0.001 Sum_probs=162.8
Q ss_pred eEEEEECCe----eEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEeecccCccee
Q 005140 184 QFVIRSGTD----TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRL 248 (712)
Q Consensus 184 ~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~ 248 (712)
.|+...+.+ .+.+.+. ...+.+..+.-...+ .+.+||||++|+++.. ++ |.+||.. +++.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-T~~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-TFLPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-TCCEE
T ss_pred EEEECCccCCccceEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCCEE
Confidence 455544443 4446665 455555555443445 6999999999998862 34 8899999 88888
Q ss_pred eeecCC---------CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE--EEccCCceeeeccCCCcccccCCCCCcC
Q 005140 249 MRYAHP---------QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI--FDVRTGKVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 249 ~~~~~~---------~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i--wd~~~g~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
.++..+ ....++|||||++|+++...+ ...|.+ +|+.+ ++.+.....
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~--------~~~v~V~~iD~~t---v~~i~v~~~----------- 167 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--------SAAAGLSVPGASD---DQLTKSASC----------- 167 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--------SCEEEEEETTTEE---EEEEECSSC-----------
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCC--------CCeEEEEEEchhh---ceEEECCCc-----------
Confidence 887532 367899999999999886420 046888 99877 444432211
Q ss_pred CCCcCeEEecCCCCC--EEEEecCCeEEEEEcCC-----ceecccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 318 GVSWPVFRWGGGKDK--YFAKLGKNMISVYETES-----FTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~--~la~~~d~~i~iwd~~~-----~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
+...| +++ |++.+.|+.+.+.++.+ ++.+... ....+.-.. . ++++..+++ .+.
T Consensus 168 ------~~~~p-~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~-----vs~--- 230 (368)
T 1mda_H 168 ------FHIHP-GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVW-----AVA--- 230 (368)
T ss_dssp ------CCCEE-EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEE-----CBS---
T ss_pred ------eEEcc-CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEE-----EcC---
Confidence 11234 443 33333388888888876 4443211 011111011 3 555665555 222
Q ss_pred eEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 389 ARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 389 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
..++.++..... .+....+..... ... ... ....
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~---------------------------------------~~~--~~~---p~g~ 266 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGR---------------------------------------KAD--NFR---SAGF 266 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHH---------------------------------------HHT--TEE---ECSS
T ss_pred CEEEEEECCCCcceEEEEEEeccccc---------------------------------------ccc--ccc---cCcc
Confidence 344444442211 000000000000 000 000 1111
Q ss_pred EEEEEeeCCCEEEEEEc-C-CC----CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 467 IAFAWEPKGHRFAVIHG-D-SP----RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~-d-~~----~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
..++++|++++++++.. . +. ...+.++|+.+.+ .+..+. +.....++|+|||++++++.... ++.|
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~------vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~-~~~V 339 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ------TSGPISNGHDSDAIIAAQDGASDNYANSAG-TEVL 339 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC------EEECCEEEEEECEEEECCSSSCEEEEEETT-TTEE
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe------EEEEEECCCCcceEEECCCCCEEEEEccCC-CCeE
Confidence 22578999998887644 2 10 0156699997654 455554 33578999999998655554311 7999
Q ss_pred EEEECCcceeeeeccc-cceeeEEECC
Q 005140 540 EFYNVDELETMATAEH-FMATDVEWDP 565 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~-~~v~~~~~sp 565 (712)
.++|+.+++.+.+... .....+++.+
T Consensus 340 sVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEEECCCCcEEEEEECCCCCCEEEeec
Confidence 9999999999887543 3444555543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-07 Score=94.10 Aligned_cols=257 Identities=11% Similarity=0.012 Sum_probs=157.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
..+.+++++++|+..++...+ +.|.+||.. ++... +.... ... + .+.+.+ +|
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~----------~~v~~~~~~-~~~~~-~~~~~~~~~~------------~-~i~~~~-~g 73 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKA----------NKISSLDQS-GRIKE-FEVPTPDAKV------------M-CLIVSS-LG 73 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTT----------TEEEEECTT-SCEEE-EECSSTTCCE------------E-EEEECT-TS
T ss_pred CCcceeeECCCCCEEEEcCCC----------CeEEEECCC-CceEE-EECCCCCCcc------------e-eEEECC-CC
Confidence 358899999999988877666 789999976 65433 22111 111 1 578889 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-ee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NL 407 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 407 (712)
.++++.. ++.|..|+.. ++.. .... ....+.++++.|+|.+++. ......|..++.. .+..... ..
T Consensus 74 ~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-------~~~~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFT-------QLNGDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEE-------ETTTTEEEEECTT-SCEEEEECSS
T ss_pred CEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEE-------ccCCCeEEEECCC-CCEEEccCCC
Confidence 8777766 7889999987 5432 1111 2245889999999987665 2223466777665 3222111 10
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
.......+.+.++|+. .++..... .++.+...+ ....+.++.+...+..++++++|..+++....+
T Consensus 144 ~~~~~~~i~~d~~g~l-~v~~~~~~----------~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-- 209 (300)
T 2qc5_A 144 KGSYPAFITLGSDNAL-WFTENQNN----------SIGRITNTG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN-- 209 (300)
T ss_dssp TTCCEEEEEECTTSSE-EEEETTTT----------EEEEECTTC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--
T ss_pred CCCCceeEEECCCCCE-EEEecCCC----------eEEEECCCC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCC--
Confidence 1123445678888884 44333211 344444322 222233434456788999999997665544444
Q ss_pred CeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 562 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~ 562 (712)
.|.+|+. ++.. .. ..+. ...+.+++++++|+.+++... ++.|..|+.. +..... .....+.+++
T Consensus 210 -~i~~~~~-~g~~----~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 210 -KIGRITT-TGEI----SE-YDIPTPNARPHAITAGKNSEIWFTEWG---ANQIGRITND-NTIQEYQLQTENAEPHGIT 278 (300)
T ss_dssp -EEEEECT-TCCE----EE-EECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEECTT-SCEEEEECCSTTCCCCCEE
T ss_pred -EEEEEcC-CCcE----EE-EECCCCCCCceEEEECCCCCEEEeccC---CCeEEEECCC-CcEEEEECCccCCccceeE
Confidence 7888887 2221 12 1222 235788999999986665544 6899999985 433221 1235678899
Q ss_pred ECCCCCEEE
Q 005140 563 WDPTGRYVA 571 (712)
Q Consensus 563 ~spdg~~l~ 571 (712)
++++|+..+
T Consensus 279 ~~~~g~l~v 287 (300)
T 2qc5_A 279 FGKDGSVWF 287 (300)
T ss_dssp ECTTSCEEE
T ss_pred eCCCCCEEE
Confidence 999998443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-09 Score=102.15 Aligned_cols=187 Identities=15% Similarity=0.128 Sum_probs=130.7
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCC-cccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCC---CeeEEE
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP---QVKLID 260 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~---~v~~i~ 260 (712)
+++.++++.+.+|+. ..++..-.+..+. ..+.+++++|+|++|+ +..+++..||.. ++.+-++..+ .+.++.
T Consensus 8 lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~--G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 8 LVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRD--GRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp EEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT--SCEEEEEECCTTCEEEEEE
T ss_pred EEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC--CCEEEEEcCCCCccccccE
Confidence 444556777778887 5676666776665 4678999999999999 445568899985 4555555432 488999
Q ss_pred ecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+.|+|++|++.+. . +.|..+|. +|+.+..+....... ....... .++..+ +|+++++..
T Consensus 84 ~~~dG~~lv~~~~~~----------~~v~~vd~-~Gk~l~~~~~~~~~~--~~~~~~~-----~v~~~~-~G~~lv~~~~ 144 (276)
T 3no2_A 84 ILPDGNALVAWCGHP----------STILEVNM-KGEVLSKTEFETGIE--RPHAQFR-----QINKNK-KGNYLVPLFA 144 (276)
T ss_dssp ECTTSCEEEEEESTT----------EEEEEECT-TSCEEEEEEECCSCS--SGGGSCS-----CCEECT-TSCEEEEETT
T ss_pred ECCCCCEEEEecCCC----------CEEEEEeC-CCCEEEEEeccCCCC--ccccccc-----CceECC-CCCEEEEecC
Confidence 9999999999887 6 77888884 888887775322100 0000001 357789 999999888
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
++.|..||.. |+.+.+.... ....++...++|+.+++ ++. ..+|..++..+.+.+-
T Consensus 145 ~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~-----~~~--~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 145 TSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVA-----CGD--AHCFVQLNLESNRIVR 200 (276)
T ss_dssp TTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEE-----CBT--TSEEEEECTTTCCEEE
T ss_pred CCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEE-----eCC--CCeEEEEeCcCCcEEE
Confidence 9999999988 8877665443 34567788899998886 333 3467777766555443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-08 Score=100.83 Aligned_cols=235 Identities=13% Similarity=0.123 Sum_probs=144.8
Q ss_pred CCCCCEEEEec--CCeEEEEEcCCc----eeccccc---c----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 328 GGKDKYFAKLG--KNMISVYETESF----TLIDKKS---L----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 328 ~~dg~~la~~~--d~~i~iwd~~~~----~~~~~~~---~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
. ++++|+..+ ++.|.|+|+.+. ++..... + ....-..+..+|+| ++++ ..+...+++...|.++
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs-~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYIS-ALGNEEGEGPGGILML 169 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEE-EEEETTSCSCCEEEEE
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEE-cCCCcCCCCCCeEEEE
Confidence 7 888888777 899999998644 2222110 0 11134667889999 4443 2222225667889999
Q ss_pred ecCCccceeeeeeeeec---ceeEEECcCCCEEEEEEccc---ccccc-------cccccEEEEEEecCCcceeEEEecC
Q 005140 395 QIPSKEELRQKNLFSVS---DCKMYWQSSGDYLAVKVDRY---TKTKK-------STYTGFELFRIKERDIPIEVLELDN 461 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~---~~~~~~s~~g~~l~~~~~~~---~~~~~-------~~~~~~~l~~l~~~~~~~~~~~l~~ 461 (712)
+..+.+.+......... ...+.|+|+++.+++..-.. ...++ .+...+.+|++... .....+.+..
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~ 248 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGE 248 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEESCT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEecCC
Confidence 99988877665433221 23467899999777753110 00000 12345788887653 3344444521
Q ss_pred CCCceEEEEE--eeCCCEEEEEEc-----CCCCCeEEEEEeecccccCceeEEEE--eC------------------CCc
Q 005140 462 KNDKIIAFAW--EPKGHRFAVIHG-----DSPRPDISFYSMRTAQHAGRVSKLTT--LK------------------GKQ 514 (712)
Q Consensus 462 h~~~v~~~~~--sp~g~~l~~~~~-----d~~~~~v~i~d~~~~~~~~~~~~~~~--~~------------------~~~ 514 (712)
.......+.| +|+|+++.++.. ... +|.+|..+.+. +..... +. +..
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss--~V~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSS--SIWLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCE--EEEEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCc--eEEEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCc
Confidence 1123444544 999999888875 432 78777765422 222221 11 123
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECC---cceeeeecccc----------------ceeeEEECCCCCEEEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVD---ELETMATAEHF----------------MATDVEWDPTGRYVATAV 574 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~---~~~~~~~~~~~----------------~v~~~~~spdg~~l~t~s 574 (712)
...+.+||||++|+++..+ .+.|.+||+. +.+++.....+ ....+++||||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 5779999999999999874 6899999985 23444432222 357899999999999888
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-08 Score=99.55 Aligned_cols=232 Identities=7% Similarity=0.024 Sum_probs=143.3
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
.+.|++ ++..|.... ++.|..|+..++.... . .....+.+++++|+|++++. .+ ..|+.++..+.+
T Consensus 17 gp~w~~-~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-------~~--~~l~~~d~~~g~ 84 (297)
T 3g4e_A 17 SPVWEE-VSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-------IG--TKFCALNWKEQS 84 (297)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-------ET--TEEEEEETTTTE
T ss_pred CCeEEC-CCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-------EC--CeEEEEECCCCc
Confidence 578999 776655554 8999999988765421 1 12345889999999996654 11 357778766543
Q ss_pred ceeeeee----eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC
Q 005140 401 ELRQKNL----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 401 ~~~~~~~----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
....... .......+.++|+|++++..................+|.+...+.... +..+....+.++|+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEEESBEEEEEECTTSC
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---EeeccccccceEEcCCCC
Confidence 2111111 011233467899999655443321100000012246888875443221 112234567899999999
Q ss_pred EEEEEEc-CCCCCeEEEEEeeccccc-CceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 477 RFAVIHG-DSPRPDISFYSMRTAQHA-GRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 477 ~l~~~~~-d~~~~~v~i~d~~~~~~~-~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.|+++.. .+ .|..|++....+. .....+..+.. .....++++++|++.++... .+.|..||..+++.+..
T Consensus 162 ~lyv~~~~~~---~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 162 IFYYIDSLSY---SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---GGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp EEEEEEGGGT---EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---TTEEEEECTTTCCEEEE
T ss_pred EEEEecCCCC---cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---CCEEEEEcCCCceEEEE
Confidence 8877665 34 8999988421111 01122333332 34678999999987766655 67899999998887765
Q ss_pred c--cccceeeEEEC-CCCCEEEEEEc
Q 005140 553 A--EHFMATDVEWD-PTGRYVATAVT 575 (712)
Q Consensus 553 ~--~~~~v~~~~~s-pdg~~l~t~s~ 575 (712)
. +...+++++|+ |+++.|..++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 3 33578999998 89988777665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-08 Score=99.10 Aligned_cols=245 Identities=8% Similarity=0.007 Sum_probs=143.0
Q ss_pred cccceEEEcCCCcEEEE-------EecC-ceEEeecccCcceee-ee-----cCCCeeEEEecCC-CCEEEEEcCCCCCC
Q 005140 214 WTESFVQWSPLGTYLAT-------VHRQ-GAAVWGGANTFNRLM-RY-----AHPQVKLIDFSPG-EKYLVTYSSHEPSN 278 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat-------~~~~-~i~iw~~~~~~~~~~-~~-----~~~~v~~i~~Spd-g~~l~t~s~d~~~~ 278 (712)
....+++|+++|.++++ ...+ +|.+|+.. +++... .. ....+.+++++|+ |+.+++...
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK-TGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT-TCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC-CCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 34568999999998887 3444 48899976 444322 11 1245899999999 775555543
Q ss_pred CcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------------Ce
Q 005140 279 PRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------------NM 341 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------------~~ 341 (712)
..|.+||.. ++.... ........ ... ...+.+++ +|+++++.. + +.
T Consensus 92 ------~~l~~~d~~-g~~~~~~~~~~~~~~-------~~~--~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 92 ------LGLLVVQTD-GTFEEIAKKDSEGRR-------MQG--CNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp ------TEEEEEETT-SCEEECCSBCTTSCB-------CBC--CCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ------CCEEEEeCC-CCEEEEEeccCCCcc-------ccC--CcCEEECC-CCCEEEEecCcccccccccccccCCCCe
Confidence 368899987 765433 22111000 000 11689999 998777765 4 45
Q ss_pred EEEEEcCCceecccccccccCeeeEEEC----CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 342 ISVYETESFTLIDKKSLKVENVMDFSWS----PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~~~~s----p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|..|+.. ++... ..........++|+ |+++.|.+. ... ...|+.|+...
T Consensus 155 l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~----~~~--~~~i~~~~~~~------------------- 207 (314)
T 1pjx_A 155 IYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVA----ETP--TKKLWSYDIKG------------------- 207 (314)
T ss_dssp EEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEE----ETT--TTEEEEEEEEE-------------------
T ss_pred EEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEE----ECC--CCeEEEEECCC-------------------
Confidence 6666654 33221 11223346778888 888655441 112 23444443210
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|.... ..++ ..+..+. ..+..++++++|+.+++...++ .|.+|+..
T Consensus 208 --~g~~~~----------------~~~~-----------~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~---~i~~~d~~ 255 (314)
T 1pjx_A 208 --PAKIEN----------------KKVW-----------GHIPGTHEGGADGMDFDEDNNLLVANWGSS---HIEVFGPD 255 (314)
T ss_dssp --TTEEEE----------------EEEE-----------EECCCCSSCEEEEEEEBTTCCEEEEEETTT---EEEEECTT
T ss_pred --CCcccc----------------ceEE-----------EECCCCCCCCCCceEECCCCCEEEEEcCCC---EEEEEcCC
Confidence 010000 0000 1121222 5567899999998888777766 89999986
Q ss_pred cccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 497 TAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
++... .....+...+.+++|+|+|+.|++++.. ++.|..|++..
T Consensus 256 ~g~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~ 299 (314)
T 1pjx_A 256 GGQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR 299 (314)
T ss_dssp CBSCS----EEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred CCcEe----EEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence 44321 2223334568899999999967666531 57899999874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-07 Score=94.66 Aligned_cols=269 Identities=11% Similarity=0.026 Sum_probs=162.1
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
.....+++++++|++.++...++ |.+|+.. ......... ...+.+++++++|+..++.... +.|..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~----------~~v~~ 87 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA----------NKIGK 87 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT----------TEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC----------CeEEE
Confidence 34567899999999887776555 8899877 222222222 2358999999999988777666 78999
Q ss_pred EEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc-ccccccCeee
Q 005140 290 FDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVMD 365 (712)
Q Consensus 290 wd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~~ 365 (712)
||.. ++.. .+... .... ..+++.+ +|.++++.. ++.|..|+.. +..... .......+.+
T Consensus 88 ~d~~-g~~~-~~~~~~~~~~~-------------~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 88 LSKK-GGFT-EYPLPQPDSGP-------------YGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp ECTT-SCEE-EEECSSTTCCE-------------EEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred ECCC-CCeE-EecCCCCCCCC-------------ccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 9976 6543 23221 1111 1578889 998877776 7899999887 544321 1112345889
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee--eeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
+++.|+|+..+. ......|+.++. ..+... ... .......+.++++|...++....+ .
T Consensus 151 i~~d~~g~l~v~-------~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-----------~ 210 (300)
T 2qc5_A 151 ITLGSDNALWFT-------ENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN-----------K 210 (300)
T ss_dssp EEECTTSSEEEE-------ETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT-----------E
T ss_pred EEECCCCCEEEE-------ecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC-----------E
Confidence 999999985554 222345777776 332221 111 112234567788886544332222 2
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEc
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWS 521 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~s 521 (712)
++.+...+ ......++.+...+.+++++++|+.+++...++ .|..|+. ++. ... ..+. ...+.+++++
T Consensus 211 i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~i~~~~~-~g~----~~~-~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 211 IGRITTTG-EISEYDIPTPNARPHAITAGKNSEIWFTEWGAN---QIGRITN-DNT----IQE-YQLQTENAEPHGITFG 280 (300)
T ss_dssp EEEECTTC-CEEEEECSSTTCCEEEEEECSTTCEEEEETTTT---EEEEECT-TSC----EEE-EECCSTTCCCCCEEEC
T ss_pred EEEEcCCC-cEEEEECCCCCCCceEEEECCCCCEEEeccCCC---eEEEECC-CCc----EEE-EECCccCCccceeEeC
Confidence 34443322 222233434456788999999998555544445 7889987 222 111 2222 2357889999
Q ss_pred cCCCeEEEEeccCCCceEEEEEC
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++|+.++ ++. . .|..++.
T Consensus 281 ~~g~l~v-~~~---~-~i~~~~p 298 (300)
T 2qc5_A 281 KDGSVWF-ALK---C-KIGKLNL 298 (300)
T ss_dssp TTSCEEE-ECS---S-EEEEEEE
T ss_pred CCCCEEE-Ecc---C-ceEEeCC
Confidence 9998554 433 4 6666664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-08 Score=100.07 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=131.2
Q ss_pred ceEEEcCCCcEEEEEe-cCc-eEEeecccCcceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 217 SFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
-++.|+|++..|+... ..+ |..|+.. +... ..+.. ..+.+++++|+|+++++. . ..|.+||..
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~-~~~~-~~~~~~~~~~~i~~~~dG~l~v~~--~----------~~l~~~d~~ 81 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSF-TKQV-QRVTMDAPVSSVALRQSGGYVATI--G----------TKFCALNWK 81 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT-TCCE-EEEECSSCEEEEEEBTTSSEEEEE--T----------TEEEEEETT
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECC-CCcE-EEEeCCCceEEEEECCCCCEEEEE--C----------CeEEEEECC
Confidence 4689999655554444 444 8899988 4433 23333 349999999999966554 3 468999987
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------CeEEEEEcCCceecccccccccCe
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------NMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
+++............ ......++++| +|+++++.. . ....||.+.....+..........
T Consensus 82 ~g~~~~~~~~~~~~~---------~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p 151 (297)
T 3g4e_A 82 EQSAVVLATVDNDKK---------NNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS 151 (297)
T ss_dssp TTEEEEEEECCTTCS---------SEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE
T ss_pred CCcEEEEEecCCCCC---------CCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc
Confidence 776433222111000 00011588999 999777543 2 234555554221111111223345
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
+.++|+|+++.|.+. .....+|+.|+... .+|.. . . ..
T Consensus 152 ngi~~spdg~~lyv~------~~~~~~i~~~~~d~--------------------~~G~~-~---~------------~~ 189 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYI------DSLSYSVDAFDYDL--------------------QTGQI-S---N------------RR 189 (297)
T ss_dssp EEEEECTTSCEEEEE------EGGGTEEEEEEECT--------------------TTCCE-E---E------------EE
T ss_pred cceEEcCCCCEEEEe------cCCCCcEEEEeccC--------------------CCCcc-c---C------------cE
Confidence 788889888876542 22233455554310 11110 0 0 00
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE--eCCCceeEEEEc
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT--LKGKQANALFWS 521 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~v~~l~~s 521 (712)
++ ..+..+.+.+..++++++|+..++....+ .|..|+..++. .+.. ++...+++++|+
T Consensus 190 ~~-----------~~~~~~~~~p~g~~~d~~G~lwva~~~~~---~v~~~d~~tG~------~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 190 SV-----------YKLEKEEQIPDGMCIDAEGKLWVACYNGG---RVIRLDPVTGK------RLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EE-----------EECCGGGCEEEEEEEBTTSCEEEEEETTT---EEEEECTTTCC------EEEEEECSSSBEEEEEEE
T ss_pred EE-----------EECCCCCCCCCeeEECCCCCEEEEEcCCC---EEEEEcCCCce------EEEEEECCCCCceEEEEe
Confidence 00 11111234567889999998777766666 79999986554 3333 334468999998
Q ss_pred -cCCCeEEEEec
Q 005140 522 -PSGRFIVLAGL 532 (712)
Q Consensus 522 -pdg~~l~~~~~ 532 (712)
|+++.|++++.
T Consensus 250 g~d~~~L~vt~~ 261 (297)
T 3g4e_A 250 GKNYSEMYVTCA 261 (297)
T ss_dssp SGGGCEEEEEEB
T ss_pred CCCCCEEEEEcC
Confidence 89988877664
|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=109.78 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=65.2
Q ss_pred CCCEEEECCCCCCC---chhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVP---KEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~---~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-.++|||+|||.-. .-+...+++.|+++|++||.|.+ |.|+. +||||||+|.+.++|+.|++.|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--IRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--EEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--EEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 46799999999621 11223479999999999999999 99985 579999999999999999999999999
Q ss_pred ------------CCceEEEEEee
Q 005140 135 ------------DRAHIFAVNMF 145 (712)
Q Consensus 135 ------------~~~~~l~v~~~ 145 (712)
.+ +.|.|...
T Consensus 205 ~~~~~~e~~~~~~g-r~L~V~wA 226 (240)
T 3u1l_A 205 LLPSDKEWDDRREG-TGLLVKWA 226 (240)
T ss_dssp CCTTSTTGGGGGGS-CCCEEEEC
T ss_pred eccccccccccCCC-CEEEEEEc
Confidence 55 47777664
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-11 Score=95.97 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc--C
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL--D 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~--~ 135 (712)
-+++|||+|||. +..+++|+++|++||.|.+ +.++.| +||||||+|.+.++|++ +++..+ .
T Consensus 4 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~ 66 (88)
T 1wf0_A 4 GSSGVFVGRCTG------DMTEDELREFFSQYGDVMD--VFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIK 66 (88)
T ss_dssp CCCEEEEESCCS------SSCHHHHHHHSTTTSCCCE--EECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEET
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHcCCeeE--EEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeC
Confidence 357999999997 4458999999999999999 999875 78999999999999975 455544 4
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
+ +.+.|...
T Consensus 67 g-~~l~v~~a 75 (88)
T 1wf0_A 67 G-ISVHISNA 75 (88)
T ss_dssp T-EEEEEECC
T ss_pred C-EEEEEEec
Confidence 4 46666654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-09 Score=111.37 Aligned_cols=284 Identities=9% Similarity=0.090 Sum_probs=172.1
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee--eccCCCcccccCCCCCcCCCCcCeEEe-c-CCCCCEEEEec
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR--DFKGSADEFAVGGTGGVAGVSWPVFRW-G-GGKDKYFAKLG 338 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-s-~~dg~~la~~~ 338 (712)
|||++|.....+. ..|.+.|+.+.++.+ .+....... .+++ + | +++++.+.+
T Consensus 99 ~DG~~lfVnd~~~---------~rVavIdl~t~~~~~ii~ip~g~~ph--------------g~~~~~~p-~~~~v~~~~ 154 (595)
T 1fwx_A 99 YDGRFLFMNDKAN---------TRVARVRCDVMKCDAILEIPNAKGIH--------------GLRPQKWP-RSNYVFCNG 154 (595)
T ss_dssp EEEEEEEEEETTT---------TEEEEEETTTTEEEEEEECSSCCSEE--------------EEEECCSS-BCSEEEEEE
T ss_pred cCCCEEEEEcCCC---------CEEEEEECCCceEeeEEeCCCCCCCc--------------ceeeeecC-CCcEEEEec
Confidence 3899998877651 679999999999877 443333222 3565 4 8 888887772
Q ss_pred -------------------CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCC----------Ce
Q 005140 339 -------------------KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ----------PA 389 (712)
Q Consensus 339 -------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~----------~~ 389 (712)
++.+.++|..+++.+....... ....++.+|+|+++.+.+... ... ..
T Consensus 155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~s--e~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNS--EKGMTLPEMTAAEMD 231 (595)
T ss_dssp CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCT--TCCSSHHHHTCCSEE
T ss_pred ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCc--ccCcchhhccccccc
Confidence 4689999999988776543322 456788999999988743221 110 12
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec--CCcceeEEEecCCCCceE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RDIPIEVLELDNKNDKII 467 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~l~~h~~~v~ 467 (712)
.+..++.+... ...++|++... +.+.+.+... .......+.. .....
T Consensus 232 ~v~V~~~~~~~---------------~~v~~Gk~~~i-------------~~V~VID~~~~~~~~~~~~Ipv---g~~Ph 280 (595)
T 1fwx_A 232 HIVVFNIAEIE---------------KAIAAGDYQEL-------------NGVKVVDGRKEASSLFTRYIPI---ANNPH 280 (595)
T ss_dssp EEEEEEHHHHH---------------HHHHHTCSEEE-------------TTEEEEECSGGGCCSSEEEEEE---ESSCC
T ss_pred eEEEeecccee---------------EeccCCCeeEE-------------CcEEEEeCcccCCceeEEEEec---CCCce
Confidence 23333332211 12344544322 1245555554 1111333444 34667
Q ss_pred EEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc------ccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 468 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ------HAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~------~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
++.++|||++++++.... ++|.++|+.+.. ...+...+..+. +.....++|+|+| ++++... .+++|.
T Consensus 281 Gv~~sPDGk~v~V~~~~s--~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~--ldsqV~ 355 (595)
T 1fwx_A 281 GCNMAPDKKHLCVAGKLS--PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLF--LDSQVV 355 (595)
T ss_dssp CEEECTTSSEEEEECTTS--SBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEET--TTTEEE
T ss_pred EEEEcCCCCEEEEeCCCC--CeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEe--cCCcEE
Confidence 899999999999887643 389999997532 001111334444 4457889999999 6655543 389999
Q ss_pred EEECCc----------ceeeeeccc-cce------eeEEECCCCCEEEEEEccceeccccE-----------EEEEecCc
Q 005140 541 FYNVDE----------LETMATAEH-FMA------TDVEWDPTGRYVATAVTSVHEMENGF-----------NIWSFNGK 592 (712)
Q Consensus 541 iwd~~~----------~~~~~~~~~-~~v------~~~~~spdg~~l~t~s~~~~~~d~~v-----------~iw~~~g~ 592 (712)
.||++. .+.+.+... ... ..+..+|||+||+++..- ....+ .+++++|.
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~---skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF---SKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC---CTTSSCCCCSSCCEEEEEEECSSS
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC---CccccccCCCCCCCcceEEEcCCC
Confidence 999986 344443211 111 234668999999998763 01223 88999876
Q ss_pred eeeeecc----cceeeeEEecCCC
Q 005140 593 LLYRTLK----DHFFQFLWRPRPP 612 (712)
Q Consensus 593 ~~~~~~~----~~i~~~~w~p~~~ 612 (712)
.+...+. .....+...|+..
T Consensus 433 ~m~lv~d~p~~~ePh~~~i~~~~~ 456 (595)
T 1fwx_A 433 KMVLVHDGPTFAEPHDAIAVHPSI 456 (595)
T ss_dssp SCEEEEEEEESSCCCCEEEECTTT
T ss_pred cEEEEEEEcCCCCCCceEEccHHH
Confidence 6554432 3444556666543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-08 Score=102.61 Aligned_cols=235 Identities=9% Similarity=0.014 Sum_probs=141.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.....|+|+|+|+.+++...+ +.|++||..++.......... . +.++|++ ++++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~----------~~I~~id~~~g~~~~~~~~~~-~--------------~~ia~~~-~g~~ 184 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDD----------PRVRLISVDDNKVTTVHPGFK-G--------------GKPAVTK-DKQR 184 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTT----------TEEEEEETTTTEEEEEEETCC-B--------------CBCEECT-TSSE
T ss_pred CCceEEEEeCCCCEEEEecCC----------CcEEEEECCCCEEEEeeccCC-C--------------CceeEec-CCCc
Confidence 357899999999977777666 789999987776554433311 1 1478999 9998
Q ss_pred EEEec-CC--eEEEEEcCCceecccc----cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee--
Q 005140 334 FAKLG-KN--MISVYETESFTLIDKK----SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ-- 404 (712)
Q Consensus 334 la~~~-d~--~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 404 (712)
|+.+. ++ .|.+|+...+...... ......+.+++++|++..|.+ .+...+|+.++.........
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-------~d~~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-------VDSNKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-------ECTTCEEEEEETTTCCEEEEEE
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-------EECCCcEEEEECCCCCEEEEec
Confidence 87776 44 7888887654332111 113345789999996555555 22345788888765542111
Q ss_pred --eeeeeecc-e-eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC---------------CCc
Q 005140 405 --KNLFSVSD-C-KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK---------------NDK 465 (712)
Q Consensus 405 --~~~~~~~~-~-~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h---------------~~~ 465 (712)
........ . .++|+|++..|++...... .++.+...+. . ..+.++ -..
T Consensus 258 ~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~----------~I~~~~~~g~-~--~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 258 LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS----------SVYKITPDGE-C--EWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp CCCCSCCCCSSCCEEEEETTTTEEEEEETTTT----------EEEEECTTCC-E--EEEEECTTCCSCBCEEGGGCBCSS
T ss_pred ccccCCCCCCccccEEEeCCCCEEEEEeCCCC----------EEEEEecCCC-E--EEEEeCCCCCCcCCCcccccEeCC
Confidence 00011111 3 7889997666666544322 3444443332 1 111121 134
Q ss_pred eEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeC--------------CCceeEEEEccCCCeEEEE
Q 005140 466 IIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK--------------GKQANALFWSPSGRFIVLA 530 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------------~~~v~~l~~spdg~~l~~~ 530 (712)
...++++|+|+.+++-. .+. .|+.|++.++. +..+.... -.....++++|+|.++++-
T Consensus 325 P~gia~d~dG~lyvad~~~~~---~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGY---CLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTC---EEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred CeEEEEeCCCCEEEEeCCCCC---EEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 78899999999555544 444 89999964432 11221110 0235789999998666665
Q ss_pred eccCCCceEEEEEC
Q 005140 531 GLKGFNGQLEFYNV 544 (712)
Q Consensus 531 ~~~~~dg~v~iwd~ 544 (712)
.. ++.|+.+++
T Consensus 398 ~~---n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AW---GKAIRKYAV 408 (409)
T ss_dssp ST---TCEEEEEEE
T ss_pred CC---CCeEEEEEe
Confidence 54 677877764
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-10 Score=113.57 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 94 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 TDALLCVANLPP------SLTQQQFEELVRPFGSLER--CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp CSCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCC------cCCHHHHHHHHHhcCCeeE--EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 457999999997 4458999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 166 -~i~v~~a 172 (284)
T 3smz_A 166 -TLYVHWT 172 (284)
T ss_dssp -ECEEEEC
T ss_pred -EEEEEEC
Confidence 7777664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-07 Score=94.82 Aligned_cols=248 Identities=12% Similarity=0.098 Sum_probs=141.2
Q ss_pred EEEec--CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcC-eEEecCCC
Q 005140 258 LIDFS--PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGK 330 (712)
Q Consensus 258 ~i~~S--pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~d 330 (712)
+..++ +++++|+..+... +.|.|+|+.+. +..+++....-.. ..+..+| .+..+| +
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s---------~~I~viD~~t~p~~p~~~k~ie~~~~~~-------~~g~s~Ph~~~~~p-d 148 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRS---------SRIYIIDTKPNPREPKIIKVIEPEEVKK-------VSGYSRLHTVHCGP-D 148 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTT---------CCEEEEECCSCTTSCEEEEEECHHHHHH-------HHCEEEEEEEEECS-S
T ss_pred ccccCCCccCCEEEEccCCC---------CeEEEEECCCCCCCceeeeeechhhccc-------ccCCCcccceeECC-C
Confidence 33457 8899988776552 68999998755 4555552000000 0000011 367789 9
Q ss_pred CCEEEEec-C------CeEEEEEcCCceeccccccccc--C-eeeEEECCCCCeEEEEee------cCCC--C----CCC
Q 005140 331 DKYFAKLG-K------NMISVYETESFTLIDKKSLKVE--N-VMDFSWSPTDPIISLFVP------ELGG--G----NQP 388 (712)
Q Consensus 331 g~~la~~~-d------~~i~iwd~~~~~~~~~~~~~~~--~-v~~~~~sp~~~~la~~~~------~~~~--~----~~~ 388 (712)
| +++++. + +.|.++|..+++++........ . -.++.|+|+++.+++..- ..|- . ...
T Consensus 149 G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~ 227 (462)
T 2ece_A 149 A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG 227 (462)
T ss_dssp C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC
Confidence 9 555444 4 7899999999988765532211 1 346889999998876200 0000 0 124
Q ss_pred eEEEEEecCCccceeeeeee----eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCC-
Q 005140 389 ARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNK- 462 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h- 462 (712)
-+|.+|+..+.+.+....+. ....+.+.++|+|++++++..-.. ....+.+.+|........ ...+.+...
T Consensus 228 d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~---~~Lss~V~v~~~d~g~~~~~~vIdi~~~~ 304 (462)
T 2ece_A 228 NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL---KDLSSSIWLWFYEDGKWNAEKVIEIPAEP 304 (462)
T ss_dssp CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET---TTCCEEEEEEEEETTEEEEEEEEEECCEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec---cCCCceEEEEEecCCceeEEEEEeCCCcc
Confidence 57888888776655554442 112223456999998888765000 000112333333321000 001111110
Q ss_pred ---------------CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--------------
Q 005140 463 ---------------NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------------- 513 (712)
Q Consensus 463 ---------------~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------------- 513 (712)
...+..+.+||||++|.++.... +.|.+|++.... +.+.+..+..+
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~VavfdV~d~~---~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQYDISNPF---KPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEEECSSTT---SCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEEEecCCC---CcEEEEEEEeCCeeccccccccccC
Confidence 23467899999999999887743 289999986321 12344444322
Q ss_pred --ceeEEEEccCCCeEEEEe
Q 005140 514 --QANALFWSPSGRFIVLAG 531 (712)
Q Consensus 514 --~v~~l~~spdg~~l~~~~ 531 (712)
.-..+.+||||++|+++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 247799999999999987
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=109.06 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCee--eeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVI--KEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v--~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+++|||.|||. ...+++|+++|++||.| .+ +.+..|+ |..+|||||+|.+.++|.+|+..|||+.+++
T Consensus 123 ~~~l~v~NLp~------~~t~~~L~~~F~~~G~v~~~~--v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 123 SNVLHFFNAPL------EVTEENFFEICDELGVKRPTS--VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CSEEEEEEECT------TCCHHHHHHHHHHHTCCCCSE--EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cceEEEeCCCC------CCCHHHHHHHHHhcCCcceEE--EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 57899999997 44589999999999998 77 8888876 5677999999999999999999999999977
Q ss_pred c
Q 005140 137 A 137 (712)
Q Consensus 137 ~ 137 (712)
+
T Consensus 193 ~ 193 (205)
T 3tyt_A 193 P 193 (205)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-08 Score=98.56 Aligned_cols=228 Identities=7% Similarity=0.024 Sum_probs=133.1
Q ss_pred cceEEEcCCCcEEEEEe-cCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 216 ESFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
...+.|+|+|+.|+..+ .++ +..|+.. ............+..++++|+|+.+++.... +.|.+|+..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~----------~~v~~~~~~ 115 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGR----------RAITRSDAD 115 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTT----------TEEEEECTT
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCC----------CEEEEECCC
Confidence 45789999999555444 444 7788876 3333333344458999999999977766665 679999974
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE----ec--------------CCeEEEEEcCCceeccc
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK----LG--------------KNMISVYETESFTLIDK 355 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~----~~--------------d~~i~iwd~~~~~~~~~ 355 (712)
|+. ..+....... .... ...+.+++ +|+++++ +. .+.|..|+..+++....
T Consensus 116 -g~~-~~~~~~~~~~------~~~~--~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 116 -GQA-HLLVGRYAGK------RLNS--PNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp -SCE-EEEECEETTE------ECSC--CCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred -CCE-EEEEeccCCC------ccCC--CCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 653 2222111000 0000 11588999 9998886 22 24567777655554322
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee----eecceeEEECcCCCEEEEEEccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
. .......++|+|+++.|.+..... .......|+.|++.... +.....+ ......+.+.++|+.. ++..+
T Consensus 185 -~-~~~~p~gl~~spdg~~lyv~~~~~-~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~- 258 (305)
T 3dr2_A 185 -A-DLDHPNGLAFSPDEQTLYVSQTPE-QGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT- 258 (305)
T ss_dssp -E-EESSEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-
T ss_pred -e-cCCCCcceEEcCCCCEEEEEecCC-cCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-
Confidence 2 444578899999999776621100 00012567777765433 2211111 1122346778888843 33321
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.|+.+...+.....+.+ ...+.+++|+|+++.|.+++.++
T Consensus 259 -----------gv~~~~~~g~~~~~~~~---~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 259 -----------GVCVFDSDGQLLGHIPT---PGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp -----------EEEEECTTSCEEEEEEC---SSCCCEEEECTTSCEEEEEETTE
T ss_pred -----------cEEEECCCCCEEEEEEC---CCceeEEEEeCCCCEEEEEcCCe
Confidence 24444444554444555 23588999999999888888754
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=112.59 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=66.2
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. +++ +.|+..|.++|++||.|.+ |.++. +|++||||||+|.+.++|.+|++.|||..+.+
T Consensus 8 ~~~~l~V~nlp~~~~~---~~l~~~L~~~F~~~G~i~~--v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKK---DELKKSLYAIFSQFGQILD--ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHHhccCCeEE--EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 467999999996 332 2333335599999999999 88886 78999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 80 ~-~l~v~~a~ 88 (282)
T 3pgw_A 80 K-PMRIQYAK 88 (282)
T ss_pred c-EEEEEEec
Confidence 5 77777643
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=113.93 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=71.5
Q ss_pred CCCCEEEECCCCCCCchhhhh-hHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEK-LEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~-~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
...++|||.|||. .. .+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|+..|||..++
T Consensus 182 ~~~~~l~v~nlp~------~~~~~~~l~~~f~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 182 LHSRCLCVDRLPP------GFNDVDALCRALSAVHSPTF--CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp TSCSEEEEECCCT------TCCCHHHHHHHTCSSSCCSE--EEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCccEEEEecCCc------ccCCHHHHHHHhhCCCCeEE--EEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 3568999999997 32 38899999999999999 9999998 8999999999999999999999999999998
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 253 g~-~l~v~~a~ 262 (284)
T 3smz_A 253 GS-HLRVSFCA 262 (284)
T ss_dssp TE-ECEEEECC
T ss_pred Ce-EEEEEEec
Confidence 85 77777654
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=105.06 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=64.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. + ..+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 98 ~~~~l~v~nlp~------~~t~~~l~~~F~~~g~v~~--~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSF------NITEDELKEVFEDALEIRL--V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCS------SCCHHHHHHHCTTCSEEEE--E-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCC------CCCHHHHHHHHHhcCeEEE--e-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 457999999997 4448999999999999766 4 45899999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 165 -~i~v~~a 171 (175)
T 1fje_B 165 -SVSLYYT 171 (175)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEec
Confidence 7777654
|
| >3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=113.14 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=62.9
Q ss_pred ccccCCCCEEEECCC--CCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 005140 53 EVESGFGNIIVVDNL--PVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN 130 (712)
Q Consensus 53 ~~~~~~~~~~~v~~l--p~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~ 130 (712)
...+.-+++|||+|+ +. ...+++|+++|++||+|.+ |.|+. +||||||+|++.++|++|++.||
T Consensus 12 ~~~~~ps~~l~VgN~gl~~------~~te~~L~~~F~~~G~V~~--v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln 77 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGN------GVSRNQLLPVLEKCGLVDA--LLMPP------NKPYSFARYRTTEESKRAYVTLN 77 (345)
T ss_dssp CCCSSCCSEEEEETCSGGG------TCCHHHHHHHHHTTSCEEE--EECCT------TCSEEEEEESSHHHHHHHHHHTT
T ss_pred eecCCCCCEEEEEcCCCCC------CCCHHHHHHHHHhcCCeEE--EEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 334445679999995 54 4448999999999999998 88864 57999999999999999999999
Q ss_pred CCccC---Cc-eEEEEEeec
Q 005140 131 GYKLD---RA-HIFAVNMFD 146 (712)
Q Consensus 131 ~~~~~---~~-~~l~v~~~~ 146 (712)
|..+. ++ .++.++...
T Consensus 78 G~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 78 GKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCEEECTTSCEEECEEEECS
T ss_pred CCccccccCCceEEEEEEee
Confidence 98873 22 245565543
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-10 Score=114.70 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCCCEEEECCCCCCCchhhh-hhHHHHHHHhhccCeeeeceEEEeccCC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 57 GFGNIIVVDNLPVVPKEKFE-KLEGVIRKIYSQIGVIKEDGLWMPVDPE-TQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~-~~~~~l~~~f~~~g~v~~~~~~~~~d~~-~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.-.++|||.|||. . ..+++|+++|++||.|.. +.++.|+. ||+++|||||+|.+.++|.+|+ .|||..+
T Consensus 208 ~~~~~l~v~nlp~------~~~t~~~l~~~F~~~G~v~~--v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 208 LEGREIMIRNLST------ELLDENLLRESFEGFGSIEK--INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp CTTTEEEEEEECT------TTCCHHHHHHHHGGGSCEEE--EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred CCCceEEEECCCc------ccCCHHHHHHHHhccCCeeE--EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 3568999999997 4 448899999999999999 99999986 5999999999999999999999 9999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 279 ~g~-~i~V~~a~ 289 (292)
T 2ghp_A 279 GNR-EISVSLAD 289 (292)
T ss_dssp TTE-EEEEEECC
T ss_pred CCc-EEEEEEec
Confidence 985 78877643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-08 Score=98.21 Aligned_cols=232 Identities=8% Similarity=0.066 Sum_probs=134.6
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
.+.|++ +|+.|+..+ ++.|..|+.. +.. .........+..++++|+|+++++ ......|..++.. .+
T Consensus 49 gp~~~~-~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~~~~~gl~~d~dG~l~v~-------~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 49 GPAWWE-AQRTLVWSDLVGRRVLGWRED-GTV-DVLLDATAFTNGNAVDAQQRLVHC-------EHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEG-GGTEEEEEETTTTEEEEEETT-SCE-EEEEESCSCEEEEEECTTSCEEEE-------ETTTTEEEEECTT-SC
T ss_pred CCeEeC-CCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCCCccceeeECCCCCEEEE-------ECCCCEEEEECCC-CC
Confidence 579999 999544444 8899999874 432 222233445889999999997765 2333467777654 22
Q ss_pred c--eeeee-e-eeecceeEEECcCCCEEEEEEcccccc------cccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 401 E--LRQKN-L-FSVSDCKMYWQSSGDYLAVKVDRYTKT------KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 401 ~--~~~~~-~-~~~~~~~~~~s~~g~~l~~~~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
. +.... . .......+.++++|...++-..-++.. .........||.+.........+. +......++
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~ 194 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLA 194 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceE
Confidence 1 11100 0 011233468899998766421101000 000011246777765332222222 234567899
Q ss_pred EeeCCCEEEEEEcCC---CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 471 WEPKGHRFAVIHGDS---PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
|+|+++.|+++.... ....|.+|++.... ......+..........++++++|++.+ ++. +| |.+|+.+ +
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~---~g-v~~~~~~-g 267 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSG---TG-VCVFDSD-G 267 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-CCS---SE-EEEECTT-S
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-ecC---Cc-EEEECCC-C
Confidence 999999888876641 01279999986432 1011122222233457799999999444 443 44 9999986 4
Q ss_pred eeeeec-cccceeeEEECCCCCEEEEEEc
Q 005140 548 ETMATA-EHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 548 ~~~~~~-~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+.+... ....+++++|+|+++.|..++.
T Consensus 268 ~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 268 QLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp CEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 444432 2235889999999998888887
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=111.30 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=68.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccC-
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG-YKLD- 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~-~~~~- 135 (712)
-+++|||+|||. ...+.+|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|+..||+ ..+.
T Consensus 95 ~~~~l~v~nl~~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 95 HGAALTVKNLSP------VVSNELLEQAFSQFGPVEK--AVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp CSSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred cCCcccccCCCC------CCCHHHHHHHHHhcCCeEE--EEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 367999999997 4448899999999999999 9999996 999999999999999999999999954 4432
Q ss_pred --CceEEEEEeeccc
Q 005140 136 --RAHIFAVNMFDDF 148 (712)
Q Consensus 136 --~~~~l~v~~~~~~ 148 (712)
+ +.+.|......
T Consensus 166 ~~~-r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTP-RPVIVEPMEQF 179 (261)
T ss_dssp SSC-CBCEEEECCCE
T ss_pred CCC-ceEEEeecccc
Confidence 4 47777765543
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-10 Score=106.52 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=66.9
Q ss_pred cCCCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 56 SGFGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 56 ~~~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
..-+++|||+|||. -.. +++|+++|++||.|.+ |.++.|+ +|||||+|.+.++|.+|++.|||..+
T Consensus 31 ~~~~~~l~V~nLp~~~~t------e~~L~~~F~~~G~i~~--v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVT------PQSLFILFGVYGDVQR--VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCCSEEEEESCCTTTCC------HHHHHHHHHHHTCEEE--EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCCEEEEeCCCcccCC------HHHHHHHHHhCCCeEE--EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 34568999999996 333 7889999999999999 9999885 89999999999999999999999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
.++ .+.|....
T Consensus 98 ~g~-~l~v~~a~ 108 (229)
T 2adc_A 98 HGK-PIRITLSK 108 (229)
T ss_dssp SSS-BCEEECCS
T ss_pred CCe-EEEEEEec
Confidence 885 77776543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.5e-09 Score=106.57 Aligned_cols=166 Identities=9% Similarity=0.034 Sum_probs=118.4
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC----------cceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
..+++++....+++++.++ +.+|++..-. .+..... +.. |+.++| ++++|+++
T Consensus 41 nlLais~~~gll~a~~~~~----------l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGSK----------AVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp BCEEEETTTTEEEEEETTE----------EEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ETTEEEEE-
T ss_pred cEEEEcCCCCEEEEeCCCE----------EEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CCCEEEEE-
Confidence 3467888888888888764 3566654211 1112233 356 999999 99999998
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEE
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVE 562 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~ 562 (712)
.++ .|++||+.+... ......+ ..++.++.+.+.. ++++.. ||.|.+||+.++.... ....|++++
T Consensus 104 ~~~---~l~v~dv~sl~~---~~~~~~~-~~~v~~i~~~~p~--~av~~~---dG~L~v~dl~~~~~~~--~~~~Vs~v~ 169 (388)
T 1xip_A 104 TRN---ALYSLDLEELSE---FRTVTSF-EKPVFQLKNVNNT--LVILNS---VNDLSALDLRTKSTKQ--LAQNVTSFD 169 (388)
T ss_dssp ESS---EEEEEESSSTTC---EEEEEEC-SSCEEEEEECSSE--EEEEET---TSEEEEEETTTCCEEE--EEESEEEEE
T ss_pred cCC---cEEEEEchhhhc---cCcccee-ecceeeEEecCCC--EEEEEC---CCCEEEEEccCCcccc--ccCCceEEE
Confidence 666 899999976442 2233333 3356777766543 777776 9999999999776653 446899999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecCcee---eee-----------cccceeeeEEecCCCCCCC
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLL---YRT-----------LKDHFFQFLWRPRPPSFLT 616 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~---~~~-----------~~~~i~~~~w~p~~~~l~s 616 (712)
|||+| ++.+.. ||.+++|+..+..+ ... +...+.++.|.+++.++++
T Consensus 170 WSpkG--~~vg~~-----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 170 VTNSQ--LAVLLK-----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ECSSE--EEEEET-----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCc--eEEEEc-----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999 677888 89999999987664 222 3467999999999887765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-07 Score=99.79 Aligned_cols=233 Identities=9% Similarity=0.023 Sum_probs=138.8
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.++|++ +++++++.. ++.|++|+..++.+...... ..... ++|+|++..|++ +..++...|+.++......
T Consensus 135 ~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~-----~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 135 GIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYS-----IGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEE-----EBSSTTCEEEEEEGGGTTC
T ss_pred EEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEE-----EecCCCceEEEEEcCCCce
Confidence 588999 999777766 79999999987665432211 22234 999999998776 3233333788888765433
Q ss_pred eeee----eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCce--EEEEEe
Q 005140 402 LRQK----NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKI--IAFAWE 472 (712)
Q Consensus 402 ~~~~----~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v--~~~~~s 472 (712)
.... .........++++|++..|++...++ .++.+.........+. ..++.... ..++|+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-----------~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK-----------NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTC-----------EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCC-----------cEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence 2221 10112334567899666666633222 3555544332222221 11222222 389999
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--------------CCceeEEEEccCCCeEEEEe-ccCCCc
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--------------GKQANALFWSPSGRFIVLAG-LKGFNG 537 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------------~~~v~~l~~spdg~~l~~~~-~~~~dg 537 (712)
|++..|+++.... ..|+.|+.... ...+.... -.....++++|+|+++++-. . ++
T Consensus 276 p~~g~lyv~d~~~--~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~---~~ 345 (409)
T 3hrp_A 276 FVDSNFYMSDQNL--SSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK---GY 345 (409)
T ss_dssp TTTTEEEEEETTT--TEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT---TC
T ss_pred CCCCEEEEEeCCC--CEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC---CC
Confidence 9766666655432 27888886432 11121111 12357899999999666655 4 78
Q ss_pred eEEEEECCcceeeeec-c---------------ccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 538 QLEFYNVDELETMATA-E---------------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 538 ~v~iwd~~~~~~~~~~-~---------------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.|+.|++.++.+.... + -.....++++|+|..+++-.. ++.|+.+++
T Consensus 346 ~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-----n~~Ir~i~~ 408 (409)
T 3hrp_A 346 CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-----GKAIRKYAV 408 (409)
T ss_dssp EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-----TCEEEEEEE
T ss_pred EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC-----CCeEEEEEe
Confidence 9999997766654321 1 135778999999876666655 677776654
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-10 Score=105.53 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=65.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.+.. .++.|..+|+++|||||+|.++++|.+|+ .|||..+.++
T Consensus 12 ~~~~l~V~nLp~------~~t~~~l~~~f~~~g~~~~---~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNP------NKSVAELKVAISELFAKND---LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN 81 (175)
T ss_dssp SSEEEEEECCCT------TSCHHHHHHHHHHHHHHHT---CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHhCCcce---EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCe
Confidence 467999999997 4558899999999998755 34556568999999999999999999999 5999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 82 -~l~v~~~~ 89 (175)
T 1fje_B 82 -EIKLEKPK 89 (175)
T ss_dssp -EEEEECCC
T ss_pred -EEEEecCC
Confidence 78777643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=5e-07 Score=91.79 Aligned_cols=230 Identities=9% Similarity=0.019 Sum_probs=136.4
Q ss_pred eeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l~-t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
..++.|+|++..|+ +.... +.|.+||..+++. +.+....... ++.|++ +|+++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~----------~~i~~~d~~~~~~-~~~~~~~~v~--------------~i~~~~-dg~l~ 104 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILE----------RELHELHLASGRK-TVHALPFMGS--------------ALAKIS-DSKQL 104 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGG----------TEEEEEETTTTEE-EEEECSSCEE--------------EEEEEE-TTEEE
T ss_pred CcCCeEeCCCCEEEEEECCC----------CEEEEEECCCCcE-EEEECCCcce--------------EEEEeC-CCeEE
Confidence 46789999865554 44445 7899999877653 3333222221 688999 99988
Q ss_pred EEecCCeEEEEEcCCceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 335 AKLGKNMISVYETESFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 335 a~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
++.. +.|.+|+..++........ ....+.++.++|+|++++..... ........|+.++ ..+. ........
T Consensus 105 v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-~~~~~~~~l~~~~--~g~~-~~~~~~~~ 179 (326)
T 2ghs_A 105 IASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR-KAETGAGSIYHVA--KGKV-TKLFADIS 179 (326)
T ss_dssp EEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEET-TCCTTCEEEEEEE--TTEE-EEEEEEES
T ss_pred EEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC-cCCCCceEEEEEe--CCcE-EEeeCCCc
Confidence 8664 4599999877664321111 11247899999999865541110 0012456788887 2221 11111111
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEe-cCC-cc---eeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK-ERD-IP---IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~-~~---~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
....+.|+|+|+.+++...... .+.+|++. ..+ .. .....+......+..++++++|.++++....+
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~--------~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~ 251 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVN--------RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG 251 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTC--------EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred ccCCeEEcCCCCEEEEEECCCC--------EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC
Confidence 2345789999998877654321 24555543 122 11 11122323345678899999998777766666
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc-cCCCeEEEEec
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS-PSGRFIVLAGL 532 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~l~~~~~ 532 (712)
.|..|+.. +.. .....++...+.+++|+ |+++.|++++.
T Consensus 252 ---~v~~~d~~-g~~----~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 252 ---AVDRYDTD-GNH----IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ---EEEEECTT-CCE----EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ---EEEEECCC-CCE----EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 79999873 221 11223344468999998 99888776654
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-10 Score=104.07 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. -.. +++|+++|++||.|.+ +.++.|+ +|||||+|.+.++|.+|++.|||..+.++
T Consensus 3 ~~~l~v~nlp~~~~~------~~~l~~~F~~~G~i~~--v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVT------PQSLFILFGVYGDVQR--VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCEEEEECCCSSSCC------HHHHHHHHHTTCCCSE--EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CcEEEEeCCCcccCC------HHHHHHHHHhcCCEEE--EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 47999999996 443 7889999999999999 9999875 78999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 70 -~l~v~~a~ 77 (198)
T 1qm9_A 70 -PIRITLSK 77 (198)
T ss_dssp -CCEEEECC
T ss_pred -EEEEEEec
Confidence 77776543
|
| >2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=87.59 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=50.7
Q ss_pred hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEee
Q 005140 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 145 (712)
Q Consensus 76 ~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~ 145 (712)
...+.+|+++|++||.|.+ |.|+ +++||||||+|.+.++|.+|++.+++. .+ +.+.|...
T Consensus 28 ~~te~~L~~~F~~~G~V~~--v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~--~g-~~l~V~~a 87 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLN--LVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL--VD-NPLKISWL 87 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEE--EEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC--SS-SBCEEECS
T ss_pred CCCHHHHHHHHHhcCCEEE--EEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC--CC-CeEEEEEc
Confidence 4569999999999999999 9998 479999999999999999999986663 44 36776553
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=107.82 Aligned_cols=75 Identities=20% Similarity=0.387 Sum_probs=65.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.++ +|||||+|.+.++|.+|++.|||..+++.
T Consensus 206 ~~~~l~v~nl~~------~~~~~~l~~~F~~~G~i~~--v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPE------ETNELMLSMLFNQFPGFKE--VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHHhcCCeEE--EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 468899999997 5558999999999999999 9998654 68999999999999999999999999833
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+.+.|...
T Consensus 273 ~~l~v~~a 280 (282)
T 3pgw_A 273 NAMKISFA 280 (282)
T ss_pred CEEEEEEe
Confidence 58887653
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=109.80 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=64.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+..|+++|++|| .|.. +.++.|+ .|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 116 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~~i~~--v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPP------SYTQRNIRDLLQDINVVALS--IRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCT------TCCHHHHHHHHHHTTCCCCE--EECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHhCCCeEE--EEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 578999999997 445889999999999 9999 9999998 58999999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 187 ~-~l~v~~a 194 (292)
T 2ghp_A 187 Y-TLVTKVS 194 (292)
T ss_dssp E-ECEEEEC
T ss_pred c-EEEEEEC
Confidence 4 7777654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-08 Score=100.34 Aligned_cols=261 Identities=9% Similarity=0.004 Sum_probs=150.6
Q ss_pred cccceEEEcCCCcEEEEEec--Cc-eEEeecccCcceeeeec---------CCCeeEEEecCCCCEEEEEcC-----CCC
Q 005140 214 WTESFVQWSPLGTYLATVHR--QG-AAVWGGANTFNRLMRYA---------HPQVKLIDFSPGEKYLVTYSS-----HEP 276 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~--~~-i~iw~~~~~~~~~~~~~---------~~~v~~i~~Spdg~~l~t~s~-----d~~ 276 (712)
.....++++|+|+++++... ++ +.||.+. ++. +..++ ...+..++|+|+|+.+++-.. .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~-- 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV-- 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC--
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC--
Confidence 45678999999999888642 23 4567665 333 22221 234899999999986665432 3
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE-EEe----cCCeEEEEEcCCce
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF-AKL----GKNMISVYETESFT 351 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l-a~~----~d~~i~iwd~~~~~ 351 (712)
..|.+||+.+++.++.+..+..... .... ...+++++ ++.++ ++. .++.|.+|++.+++
T Consensus 93 --------~~i~~~d~~tg~~~~~~~~~~~~~~--~~~~-----~~~v~vd~-~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 93 --------PKLVAWDTLNNQLSRVIYLPPPITL--SNSF-----VNDLAVDL-IHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp --------CEEEEEETTTTEEEEEEECCTTTSC--TTCC-----CCEEEEET-TTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred --------CeEEEEECCCCeEEEEEECChhhcc--cccc-----cceEEEec-CCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 5799999999987777654321100 0000 12588887 65443 332 46789999998776
Q ss_pred ecccccccccC-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc
Q 005140 352 LIDKKSLKVEN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 352 ~~~~~~~~~~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.......+... .....++++|..+.+ ...++....| ......++|+|+|+.|++....
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~g~~~~~----------------~~~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQI-----GQPDGTVIRP----------------HLGVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBE-----ECTTSCEECC----------------CCCEEEEEECTTSCEEEEEESS
T ss_pred EEEEecCCCcccccccceeECCEEEEe-----ccCCCceece----------------ecccceeEeccCCCEEEEEeCC
Confidence 54322111110 001334445544443 1222222111 0112346899999998887665
Q ss_pred cccccccccccEEEEEEecC---Ccc------eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc
Q 005140 431 YTKTKKSTYTGFELFRIKER---DIP------IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA 501 (712)
Q Consensus 431 ~~~~~~~~~~~~~l~~l~~~---~~~------~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~ 501 (712)
.. .+|.+... ... ...+...++.+....++++++|..+++....+ .|.+|+..++.
T Consensus 216 ~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~---~V~~~d~~~G~-- 280 (343)
T 2qe8_A 216 ST----------SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS---AIGVITSADRA-- 280 (343)
T ss_dssp CS----------EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT---EEEEEETTTTE--
T ss_pred CC----------eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC---eEEEEECCCCC--
Confidence 43 56766531 000 00011112344566799999998877776666 89999973332
Q ss_pred CceeEEEEeC-CCceeEEEEccCCCeEEEEec
Q 005140 502 GRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 502 ~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~ 532 (712)
...+.... .....+++|+++|+++++.+.
T Consensus 281 --~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 281 --YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp --EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred --EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 22333322 234688999999987777654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-07 Score=93.79 Aligned_cols=278 Identities=7% Similarity=0.009 Sum_probs=152.7
Q ss_pred cceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 245 FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 245 ~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
.+.+..+. ..+..++++|+|+.+++..... . +.++||.+.+|+ +..+....... .+.-..+. .+
T Consensus 9 ~~~v~~~~-~~p~~va~~~~g~~~v~~~~~~------~--~~~~l~~~~~g~-~~~~p~~~~~~-~~~~~~p~-----gv 72 (343)
T 2qe8_A 9 LEVVAELS-LAPGNITLTPDGRLFLSLHQFY------Q--PEMQVAELTQDG-LIPFPPQSGNA-IITFDTVL-----GI 72 (343)
T ss_dssp CEEEEEES-SCEEEEEECTTSCEEEEECGGG------C--CSCSEEEEETTE-EEESCCCCSSC-CCCCSCEE-----EE
T ss_pred eEEEEEcC-CCcceEEECCCCCEEEEeCCCC------C--CceEEEEECCCC-eecCCCcccCc-ccceeEee-----EE
Confidence 34455555 5689999999999988864320 0 214566655554 34443211000 00001111 58
Q ss_pred EecCCCCCEEEEec------CCeEEEEEcCCceeccccccc------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 325 RWGGGKDKYFAKLG------KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 325 ~~s~~dg~~la~~~------d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
++++ +|+++++-. ++.|.+||+.+++++....+. ...+.+++++|++..+.+.- .+......|.
T Consensus 73 ~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd---~~~~~~~~i~ 148 (343)
T 2qe8_A 73 KSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD---PAPDDKAALI 148 (343)
T ss_dssp EECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE---CCSGGGCEEE
T ss_pred EEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEc---CccCCCCeEE
Confidence 8999 988666543 378999999988765433221 12468899998755544310 0111456788
Q ss_pred EEecCCccceeeeeeeee-cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 393 LVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+|+..+.+..+....+.. ......+.++|..+.+...++. +.. + ...+..++|
T Consensus 149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~~--------------~---~~~~~gia~ 202 (343)
T 2qe8_A 149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT---------VIR--------------P---HLGVNGIVL 202 (343)
T ss_dssp EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSC---------EEC--------------C---CCCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCc---------eec--------------e---ecccceeEe
Confidence 888766543332211000 0000112334433332222211 000 1 234678999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccc-c-------CceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQH-A-------GRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~-~-------~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
+|+|+.|+++...+. .|..++...... . ..+..... ......++++++|+++++... ++.|.+||
T Consensus 203 s~dg~~ly~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~---~~~V~~~d 275 (343)
T 2qe8_A 203 DAENEWLYLSPMHST--SMYRIKSADLSNLQLTDAELGSKIERYSE--KPICDGISIDKDHNIYVGDLA---HSAIGVIT 275 (343)
T ss_dssp CTTSCEEEEEESSCS--EEEEEEHHHHTCTTCCHHHHHTTCEEEEE--CCSCSCEEECTTCCEEEEEGG---GTEEEEEE
T ss_pred ccCCCEEEEEeCCCC--eEEEEEHHHhcCCCCChhhhhcceEeccc--CCCCceEEECCCCCEEEEccC---CCeEEEEE
Confidence 999999998887652 444444321000 0 00111111 124577999999988877766 88999999
Q ss_pred CCcceeee--ecc-ccceeeEEECCCCCEEEEEEc
Q 005140 544 VDELETMA--TAE-HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 544 ~~~~~~~~--~~~-~~~v~~~~~spdg~~l~t~s~ 575 (712)
..+++... ... ...+++++++++|+.+++.+.
T Consensus 276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 94454322 222 346789999999987777665
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-09 Score=105.12 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=64.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+.+|+++|++||.|.. |.++. ++|||||+|.+.++|.+|+..+||..+.++
T Consensus 21 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 21 QRCRLFVGNLPT------DITEEDFKRLFERYGEPSE--VFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp GGGEEEEESCCT------TCCHHHHHHHTGGGCCCSE--EEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 457999999997 5559999999999999999 98864 479999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 87 -~l~v~~a 93 (261)
T 3sde_A 87 -PLRIRFA 93 (261)
T ss_dssp -ECEEEEC
T ss_pred -eeEeeec
Confidence 7777664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=94.90 Aligned_cols=222 Identities=9% Similarity=-0.069 Sum_probs=130.2
Q ss_pred ccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCccee--eeec-
Q 005140 176 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRL--MRYA- 252 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~--~~~~- 252 (712)
..+|++...|++...++.+..|+.. .+. ...+. ....+.+++|+|+|+++++. .+++.+|+.. ++... ....
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~-~~~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~-~g~~~~~~~~~~ 129 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLA-SGR-KTVHA-LPFMGSALAKISDSKQLIAS-DDGLFLRDTA-TGVLTLHAELES 129 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETT-TTE-EEEEE-CSSCEEEEEEEETTEEEEEE-TTEEEEEETT-TCCEEEEECSST
T ss_pred eEeCCCCEEEEEECCCCEEEEEECC-CCc-EEEEE-CCCcceEEEEeCCCeEEEEE-CCCEEEEECC-CCcEEEEeeCCC
Confidence 3456555666666666677777762 222 22222 23468899999999988765 6679999987 44432 2211
Q ss_pred -C--CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 253 -H--PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 253 -~--~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
. ..+.++.++|+|+++++...... ....+.|..++ +++............ .++|+|
T Consensus 130 ~~~~~~~~~i~~d~~G~l~v~~~~~~~----~~~~~~l~~~~--~g~~~~~~~~~~~~~--------------~i~~s~- 188 (326)
T 2ghs_A 130 DLPGNRSNDGRMHPSGALWIGTMGRKA----ETGAGSIYHVA--KGKVTKLFADISIPN--------------SICFSP- 188 (326)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEETTC----CTTCEEEEEEE--TTEEEEEEEEESSEE--------------EEEECT-
T ss_pred CCCCCCCCCEEECCCCCEEEEeCCCcC----CCCceEEEEEe--CCcEEEeeCCCcccC--------------CeEEcC-
Confidence 1 13889999999997765542100 01114566666 554332211111111 589999
Q ss_pred CCCEEEEec--CCeEEEEEcC--Cc-eecccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 330 KDKYFAKLG--KNMISVYETE--SF-TLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 330 dg~~la~~~--d~~i~iwd~~--~~-~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
|++.++.+. ++.|.+|++. ++ .+...... .......++++++|.+.+. ......|..|+. ..
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva-------~~~~~~v~~~d~-~g 260 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA-------RWGEGAVDRYDT-DG 260 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE-------EETTTEEEEECT-TC
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE-------EeCCCEEEEECC-CC
Confidence 998765554 7899999986 55 32211111 1223678999999986654 112235777776 44
Q ss_pred cceeeeeeeeecceeEEEC-cCCCEEEEEEccc
Q 005140 400 EELRQKNLFSVSDCKMYWQ-SSGDYLAVKVDRY 431 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s-~~g~~l~~~~~~~ 431 (712)
+.+............++|+ +++..|++.+...
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 4444433333345567787 8888887766543
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-10 Score=107.15 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEE-----EeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLW-----MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~-----~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.+++|||+|||. +..+++|+++|++||.|.. +. ...+..+++++|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~~~~l~V~nLp~------~~te~~l~~~F~~~g~i~g--~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 3 MARRLYVGNIPF------GITEEAMMDFFNAQMRLGG--LTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp -CCEEEEESCCT------TCCHHHHHHHHHHHHHHHT--CCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred ceeEEEEcCCCC------CCCHHHHHHHHHHHHhhcc--cccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 468999999997 4558999999999953322 11 1111123567899999999999999999 89999
Q ss_pred ccCCceEEEEEeecc
Q 005140 133 KLDRAHIFAVNMFDD 147 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~ 147 (712)
.+.++ .+.|.....
T Consensus 74 ~~~g~-~i~v~~~~~ 87 (198)
T 2yh0_A 74 IFQGQ-SLKIRRPHD 87 (198)
T ss_dssp EETTE-EEEEECCCC
T ss_pred EEcCc-eEEEeCCCC
Confidence 99885 788876443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-07 Score=98.16 Aligned_cols=268 Identities=11% Similarity=0.019 Sum_probs=162.3
Q ss_pred CCCcEEEEEecCc--eEEeecccCcceee--eecC-CCeeEEEe-c-CCCCEEEEEcCCCCC--------CCcCCCccEE
Q 005140 223 PLGTYLATVHRQG--AAVWGGANTFNRLM--RYAH-PQVKLIDF-S-PGEKYLVTYSSHEPS--------NPRDANRVVI 287 (712)
Q Consensus 223 pdg~~lat~~~~~--i~iw~~~~~~~~~~--~~~~-~~v~~i~~-S-pdg~~l~t~s~d~~~--------~~~~~~~~~I 287 (712)
|||++|.....++ |.+.|+. +++... .++. .+...+++ + |+++|++.++..... ...+...+.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT-TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899999887766 8899999 888666 4443 45889998 6 999999888643110 0112333689
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------------CeEEEEEcCCce
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------------NMISVYETESFT 351 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------------~~i~iwd~~~~~ 351 (712)
.+.|..+++.+..+......- .+..+| +|+++++.+ + ..|.+.+.....
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd--------------~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLD--------------NCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCC--------------CEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred EEEECCCCeEEEEEEeCCCcc--------------ceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 999999998888776433222 478999 999988877 2 235555544221
Q ss_pred ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC--ccc-eeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 352 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS--KEE-LRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
. +.++|+.... + .|.+++..+ .+. +..... ......+.++|||+++++..
T Consensus 243 ~---------------~v~~Gk~~~i-------~----~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 243 K---------------AIAAGDYQEL-------N----GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAG 295 (595)
T ss_dssp H---------------HHHHTCSEEE-------T----TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEEC
T ss_pred E---------------eccCCCeeEE-------C----cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeC
Confidence 1 2233443332 1 155566655 222 222222 22344567899999998866
Q ss_pred cccccccccccccEEEEEEecCC-----------cceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEee
Q 005140 429 DRYTKTKKSTYTGFELFRIKERD-----------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMR 496 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~ 496 (712)
.... .+.++++.... .....+.+ ......++|+|+| ++.+... ++ +|..|++.
T Consensus 296 ~~s~--------~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~lds---qV~kwdi~ 360 (595)
T 1fwx_A 296 KLSP--------TVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDS---QVVKWNIE 360 (595)
T ss_dssp TTSS--------BEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTS-EEEEEETTTT---EEEEEEHH
T ss_pred CCCC--------eEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCC-eEEEEEecCC---cEEEEEhh
Confidence 5432 25666655221 01111222 4567889999999 6555544 56 89999997
Q ss_pred ccc----ccCceeEEEEeCCC-ce------eEEEEccCCCeEEEEeccCCCce----------EEEEECCcce
Q 005140 497 TAQ----HAGRVSKLTTLKGK-QA------NALFWSPSGRFIVLAGLKGFNGQ----------LEFYNVDELE 548 (712)
Q Consensus 497 ~~~----~~~~~~~~~~~~~~-~v------~~l~~spdg~~l~~~~~~~~dg~----------v~iwd~~~~~ 548 (712)
+.. +......+.++.-+ +. ..+..+|||++|+++...+-|.. -.++|+.+++
T Consensus 361 ~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 361 DAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred HhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 621 11112355555533 22 22355899999999886542332 2889997543
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-09 Score=99.08 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=62.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. ...+++|+++|++|| .|.. +.+..+ .+|||||+|.+.++|.+|+..|||..+++.
T Consensus 120 ~~~l~v~nl~~------~~~~~~l~~~f~~~G~~v~~--v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 186 (198)
T 1qm9_A 120 SATLHLSNIPP------SVSEEDLKVLFSSNGGVVKG--FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGEN 186 (198)
T ss_dssp CCEEEECCCCT------TCCHHHHHHHHHHTTSCCCE--EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSC
T ss_pred ccEEEEeCCCC------CCCHHHHHHHHHHcCCCceE--EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 78999999997 444889999999999 9999 888543 279999999999999999999999999833
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
+.+.|..
T Consensus 187 ~~l~v~~ 193 (198)
T 1qm9_A 187 HHLRVSF 193 (198)
T ss_dssp CSCCEEE
T ss_pred CeEEEEe
Confidence 4666665
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5e-09 Score=95.62 Aligned_cols=70 Identities=14% Similarity=0.310 Sum_probs=58.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhcc----C-------eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHH
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI----G-------VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKE 127 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~ 127 (712)
+++|||+|||. +..+++|+++|++| | .|.. +.+. +++|||||+|.++++|.+|+
T Consensus 4 ~~~l~V~nLp~------~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~--~~~~------~~~g~afV~f~~~~~A~~A~- 68 (172)
T 2g4b_A 4 ARRLYVGNIPF------GITEEAMMDFFNAQMRLGGLTQAPGNPVLA--VQIN------QDKNFAFLEFRSVDETTQAM- 68 (172)
T ss_dssp GGEEEEESCCT------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--EEEE------TTTTEEEEEESSHHHHHHHG-
T ss_pred ccEEEEcCCCc------ccCHHHHHHHHHHHhhhcccccCCCCceee--eEec------CCCCEEEEEeCCHHHHHHHH-
Confidence 57999999997 45589999999999 5 5555 5543 45899999999999999999
Q ss_pred HhCCCccCCceEEEEEe
Q 005140 128 KTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 128 ~~~~~~~~~~~~l~v~~ 144 (712)
.+||..+.++ .+.+..
T Consensus 69 ~~~~~~~~g~-~i~v~~ 84 (172)
T 2g4b_A 69 AFDGIIFQGQ-SLKIRR 84 (172)
T ss_dssp GGTTCEETTE-ECEEEC
T ss_pred HhCCcEecCc-eeeecC
Confidence 8999999885 777765
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=8.8e-09 Score=98.66 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=62.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. ...+++|+++|++|| .|.. +.+..+ .+|||||+|.+.++|.+|++.|||..+++.
T Consensus 151 ~~~l~V~nlp~------~~t~~~l~~~f~~~G~~i~~--v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 151 SATLHLSNIPP------SVSEEDLKVLFSSNGGVVKG--FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp CSEEEEECCCT------TCCHHHHHHHHHTTSCCEEE--EEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCc------cCCHHHHHHHHHHcCCCeeE--EEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 68999999997 444899999999999 9999 888432 379999999999999999999999999823
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+.+.|...
T Consensus 218 ~~l~v~~a 225 (229)
T 2adc_A 218 HHLRVSFS 225 (229)
T ss_dssp CBCEEEEC
T ss_pred CeEEEEEe
Confidence 47777653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.1e-07 Score=85.71 Aligned_cols=209 Identities=11% Similarity=0.091 Sum_probs=127.9
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
.+.+.+++|+. ...+.|+|+|...++.+.. ..+.|.++|+.+|+.++.+.......
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~--------~~s~v~~iD~~tg~v~~~i~l~~~~f------------- 67 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLY--------GRSSVRQVALQTGKVENIHKMDDSYF------------- 67 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECST--------TTCEEEEEETTTCCEEEEEECCTTCC-------------
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCC--------CCCEEEEEECCCCCEEEEEecCCCcc-------------
Confidence 45667777764 5899999997544444431 01689999999999998876443322
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
...+.. +++.|..+. ++.+.++|..+++.+...... .+ ....+++||+.+.+ .++...|+.++..+.
T Consensus 68 -geGi~~-~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~-~g~glt~Dg~~l~v-------s~gs~~l~viD~~t~ 136 (266)
T 2iwa_A 68 -GEGLTL-LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK-DGWGLATDGKILYG-------SDGTSILYEIDPHTF 136 (266)
T ss_dssp -EEEEEE-ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-SCCEEEECSSSEEE-------ECSSSEEEEECTTTC
T ss_pred -eEEEEE-eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-CeEEEEECCCEEEE-------ECCCCeEEEEECCCC
Confidence 122333 445555444 999999999999887654333 11 23446668877776 234667777776655
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
+.+....... . +.+ -..++.+.|. +|. +.
T Consensus 137 ~v~~~I~Vg~-------------------~---------------------~~p---------~~~~nele~~-dg~-ly 165 (266)
T 2iwa_A 137 KLIKKHNVKY-------------------N---------------------GHR---------VIRLNELEYI-NGE-VW 165 (266)
T ss_dssp CEEEEEECEE-------------------T---------------------TEE---------CCCEEEEEEE-TTE-EE
T ss_pred cEEEEEEECC-------------------C---------------------Ccc---------cccceeEEEE-CCE-EE
Confidence 4333222100 0 000 1234556666 664 44
Q ss_pred EEEc-CCCCCeEEEEEeecccccCceeEEEEeCC---------------CceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 480 VIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG---------------KQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 480 ~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------------~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
+... .+ .|.+.|..++. .+..+.- ...+.++|+|+++.+++++.. .+.|+..+
T Consensus 166 vn~~~~~---~V~vID~~tg~------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~--~~~v~~i~ 234 (266)
T 2iwa_A 166 ANIWQTD---CIARISAKDGT------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL--WPKLFEIK 234 (266)
T ss_dssp EEETTSS---EEEEEETTTCC------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT--CSEEEEEE
T ss_pred EecCCCC---eEEEEECCCCc------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC--CCeEEEEE
Confidence 4443 34 88888987665 3333321 134899999999887777642 67888888
Q ss_pred CCcc
Q 005140 544 VDEL 547 (712)
Q Consensus 544 ~~~~ 547 (712)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7643
|
| >2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=76.80 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCEEEECCCCCCCch-hh-hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKE-KF-EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~-~~-~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+.+|+|...|..++. -+ +.|-..|.+.|++||.|.. +.++.|+ +||+|.+.+.|.+|++ |||+.+.+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~--vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVIL--IRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEE--EEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEE--EEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 458888887731111 01 4677889999999999999 9999876 8999999999999998 99999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .++|+...
T Consensus 76 r-~LkV~lkt 84 (91)
T 2dnr_A 76 R-TITIALKS 84 (91)
T ss_dssp E-EEEEEECC
T ss_pred e-EEEEEeCC
Confidence 5 99988743
|
| >1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=81.72 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNT-PQEAELAKEKTN--GYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~-~~~a~~a~~~~~--~~~~ 134 (712)
.+++|+|+|||.-+ ..+++|+++|++||+|.. |.+..|+. .|||+|.+ +++|..|++.+| |..|
T Consensus 17 ~G~il~v~~l~~~~-----~sredLke~F~~~G~V~~--Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 17 IGCLLKFSGDLDDQ-----TCREDLHILFSNHGEIKW--IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCEEEEEESCCSS-----CCHHHHHHHTCSSCCEEE--EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred CCeEEEEecCCCCc-----CCHHHHHHHHHhcCCEEE--EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 45699999999730 448999999999999999 99999874 49999999 899999999995 6777
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
.+ ..+++..+.
T Consensus 84 ~g-~~~~~evL~ 94 (121)
T 1owx_A 84 RN-KEVTWEVLE 94 (121)
T ss_dssp TS-SSEEEEECC
T ss_pred eC-cEEEEEECC
Confidence 76 356655443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-06 Score=97.68 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred ceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeeccc---ceeeeEEecCC
Q 005140 537 GQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD---HFFQFLWRPRP 611 (712)
Q Consensus 537 g~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~---~i~~~~w~p~~ 611 (712)
|.|..||+.+++.+-+... ..+....++.+|..+++++. |+.+++||.. |+.+...... ...-+.|.++|
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~-----dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA-----DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC-----CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC
Confidence 8899999999998766433 34556667778888888877 9999999976 7777655321 12234556666
Q ss_pred CCCC
Q 005140 612 PSFL 615 (712)
Q Consensus 612 ~~l~ 615 (712)
+.++
T Consensus 532 ~~~v 535 (677)
T 1kb0_A 532 RQYV 535 (677)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5433
|
| >1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-08 Score=76.04 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCEEEECCCCCCCchhh---hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 59 GNIIVVDNLPVVPKEKF---EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~---~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
+.+|+|..+|...+++. +.+-..|.+.|++||+|.. ++++.|+ +||+|.+.++|.+|++ |||+.++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--vr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--VRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--EEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--EEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45999998874333221 3466779999999999999 9999986 9999999999999998 9999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .++|+...
T Consensus 84 Gr-~L~V~~k~ 93 (95)
T 1ufw_A 84 GR-AVKISGPS 93 (95)
T ss_dssp TE-EEEEECCC
T ss_pred Ce-EEEEeccC
Confidence 95 89888643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-05 Score=76.58 Aligned_cols=252 Identities=10% Similarity=-0.012 Sum_probs=144.0
Q ss_pred CEEEEecCCeEEEEEcCCceecc-----cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 332 KYFAKLGKNMISVYETESFTLID-----KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 332 ~~la~~~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
.+|..+..+.|+.+++....... ........+.+++|+|++..|.+. .....+|+.++...........
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~------d~~~~~I~~~~~~g~~~~~~~~ 75 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT------DISEPSIGRASLHGGEPTTIIR 75 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE------ETTTTEEEEEESSSCCCEEEEC
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEE------ECCCCEEEEEecCCCCcEEEEE
Confidence 45555555678888877543210 011112346799999987766652 2234577788775543211111
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
........+++++++..|+++..... .++.+...+.....+ ..........++++|++.+|+++.....
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~----------~I~~~~~~g~~~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLD----------RIEVAKMDGTQRRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEE-ECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCC----------EEEEEEcCCCCEEEE-EECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 11123345678888777777654322 344443333222222 2112245788999997777766654311
Q ss_pred CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEEECC
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDP 565 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~sp 565 (712)
...|..++++.... ..+........+.++++|++.+|+++..+ .+.|..+++.+........ ......++.
T Consensus 145 ~~~I~~~~~dg~~~----~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~~~~~P~gi~~-- 216 (267)
T 1npe_A 145 NPKIETSHMDGTNR----RILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVTS-- 216 (267)
T ss_dssp SCEEEEEETTSCCC----EEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEEE--
T ss_pred CcEEEEEecCCCCc----EEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCceEEEecCCCCceEEEE--
Confidence 12787887753221 12222222356889999998888777652 5789999998654332211 223445655
Q ss_pred CCCEEEEEEccceeccccEEEEEec-Cceeeeeccc---ceeeeEEecCCC
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD---HFFQFLWRPRPP 612 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~---~i~~~~w~p~~~ 612 (712)
++.+|..+... .+.|.+++.. |..+.....+ ..+.+++.|++.
T Consensus 217 d~~~lyva~~~----~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 217 YGKNLYYTDWK----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEETT----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCEEEEEECC----CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 45666666542 5789999986 6666655443 478899999864
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-06 Score=81.19 Aligned_cols=126 Identities=10% Similarity=0.157 Sum_probs=84.6
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
.+.+.+++|.. ...+.|+ ++....+.+.+ +...|+++|+.+|+.++.+.......
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~--------g~S~v~~vD~~Tgkv~~~~~l~~~~F------------- 88 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLN--------GRSSIRKVDIESGKTLQQIELGKRYF------------- 88 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTEEEEEEEET--------TEEEEEEECTTTCCEEEEEECCTTCC-------------
T ss_pred eEEEEEecCCCCcccceEEEE-CCEEEEECCCC--------CCceEEEEECCCCcEEEEEecCCccc-------------
Confidence 34667777764 6899999 67666666654 11489999999999998887654432
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.....+ +++.|.... ++.+.+||..+++++....... ....+++++..|.. .++..+|+.+|..+.
T Consensus 89 -geGit~-~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~-------SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 89 -GEGISD-WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIM-------SDGTPVLRFLDPESL 156 (262)
T ss_dssp -EEEEEE-ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEE-------CCSSSEEEEECTTTC
T ss_pred -eeEEEE-eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEE-------ECCCCeEEEEcCCCC
Confidence 122333 444444444 9999999999998886654433 33445567888776 456778888887766
Q ss_pred cceee
Q 005140 400 EELRQ 404 (712)
Q Consensus 400 ~~~~~ 404 (712)
+.+..
T Consensus 157 ~v~~~ 161 (262)
T 3nol_A 157 TPVRT 161 (262)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 54443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-06 Score=93.75 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=52.4
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---ccceeeEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWD 564 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~s 564 (712)
.|..||+.+++. +-.+. +.+...-.++..|..+++++. ||.|+.||..+++++.+.. ....+-+.|+
T Consensus 456 ~l~A~D~~tG~~------~W~~~~~~~~~~g~~~tagglvf~gt~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~ 526 (689)
T 1yiq_A 456 KLIAWDPVKQQA------AWEVPYVTIFNGGTLSTAGNLVFEGSA---DGRVIAYAADTGEKLWEQPAASGVMAAPVTYS 526 (689)
T ss_dssp EEEEEETTTTEE------EEEEEESSSCCCCEEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCCe------EeEccCCCCccCccceECCCEEEEECC---CCcEEEEECCCCccceeeeCCCCcccCceEEE
Confidence 688888877652 22222 223444466778888988887 9999999999999986532 2223457788
Q ss_pred CCCC-EEEEEEc
Q 005140 565 PTGR-YVATAVT 575 (712)
Q Consensus 565 pdg~-~l~t~s~ 575 (712)
.+|+ |+++.+.
T Consensus 527 ~~G~qyv~~~~G 538 (689)
T 1yiq_A 527 VDGEQYVTFMAG 538 (689)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEec
Confidence 9998 4554443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-05 Score=82.43 Aligned_cols=290 Identities=10% Similarity=0.053 Sum_probs=150.9
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecC----------CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAH----------PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~----------~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
+..|++++.++ +..+|.. +++.+-++.. ..........++..|+.++.+ +.|..+|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~----------g~l~a~d~~ 121 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNAD-DGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK----------AQVYALNTS 121 (376)
T ss_dssp TTEEEEECTTSEEEEEETT-TCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT----------SEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEEcc-CCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC----------CEEEEEECC
Confidence 45566666665 7788887 6665544432 111111222245677777777 889999999
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCe-----eeEEE
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENV-----MDFSW 368 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~ 368 (712)
+|+.+..+........ .... . ++..++...++.|..+|..+++.+.......... .....
T Consensus 122 tG~~~W~~~~~~~~~~-------------~p~~-~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~ 186 (376)
T 3q7m_A 122 DGTVAWQTKVAGEALS-------------RPVV-S-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT 186 (376)
T ss_dssp TCCEEEEEECSSCCCS-------------CCEE-E-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred CCCEEEEEeCCCceEc-------------CCEE-E-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence 9998876655432210 1222 2 4444444449999999999988776543322111 11122
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-----------cceeEEECcCCCEEEEEEccccccccc
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----------SDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
. +..+.+ ++. ...+..++..+.+.+-....... ...... -.+..+++++.++.
T Consensus 187 ~--~~~v~~-----g~~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~----- 250 (376)
T 3q7m_A 187 A--FGAAVV-----GGD--NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGN----- 250 (376)
T ss_dssp E--TTEEEE-----CCT--TTEEEEEETTTCCEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSC-----
T ss_pred E--CCEEEE-----EcC--CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcE-----
Confidence 1 234444 322 34566666655544332221100 000000 12344444443332
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---CCc
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQ 514 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~ 514 (712)
+..++... +...-... ......+. .++..+++++.++ .|..+|..++. .+.... ...
T Consensus 251 ----l~~~d~~t-G~~~w~~~----~~~~~~~~--~~~~~l~~~~~~g---~l~~~d~~tG~------~~w~~~~~~~~~ 310 (376)
T 3q7m_A 251 ----LTALDLRS-GQIMWKRE----LGSVNDFI--VDGNRIYLVDQND---RVMALTIDGGV------TLWTQSDLLHRL 310 (376)
T ss_dssp ----EEEEETTT-CCEEEEEC----CCCEEEEE--EETTEEEEEETTC---CEEEEETTTCC------EEEEECTTTTSC
T ss_pred ----EEEEECCC-CcEEeecc----CCCCCCce--EECCEEEEEcCCC---eEEEEECCCCc------EEEeecccCCCc
Confidence 22222111 11111111 12223333 2467788888877 79999987665 233222 222
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--ccee-eEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
...+.. .+..|++++. +|.|+++|..+++.+..... ..+. .+.. .+..|+.++. ++.+..|+
T Consensus 311 ~~~~~~--~~~~l~v~~~---~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~-----~G~l~~~~ 375 (376)
T 3q7m_A 311 LTSPVL--YNGNLVVGDS---EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK-----DGTVYSIT 375 (376)
T ss_dssp CCCCEE--ETTEEEEECT---TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT-----TSCEEEEE
T ss_pred ccCCEE--ECCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC-----CCEEEEEe
Confidence 333333 3567777776 89999999999988765322 2222 2222 2456777777 78888776
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-05 Score=74.59 Aligned_cols=249 Identities=8% Similarity=-0.029 Sum_probs=137.5
Q ss_pred CcEEEEEecCceEEeecccCcce------eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 225 GTYLATVHRQGAAVWGGANTFNR------LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 225 g~~lat~~~~~i~iw~~~~~~~~------~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
|.+|.++..+.|..++..+.... +...+...+..++|+|++.+|..+... .+.|.++++..+...
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~~~ 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS---------EPSIGRASLHGGEPT 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT---------TTEEEEEESSSCCCE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC---------CCEEEEEecCCCCcE
Confidence 56777777666888887733211 122222347899999987777665543 168999998654432
Q ss_pred eeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeE
Q 005140 299 RDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPII 375 (712)
Q Consensus 299 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 375 (712)
..+... .... .+++++ ++..|..+. .+.|.++++..................++++|++..|
T Consensus 72 ~~~~~~~~~p~--------------~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 72 TIIRQDLGSPE--------------GIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136 (267)
T ss_dssp EEECTTCCCEE--------------EEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred EEEECCCCCcc--------------EEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEE
Confidence 222211 1111 578888 766555554 7899999987432111011122357889999976665
Q ss_pred EEEeecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 376 SLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 376 a~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
.+. .......+|+.++..... .+.... -.....+++++++.+|+++..... .++.++..+..
T Consensus 137 yv~----~~~~~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~----------~I~~~~~~g~~ 200 (267)
T 1npe_A 137 YWT----DWNRDNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTH----------RAECLNPAQPG 200 (267)
T ss_dssp EEE----ECCSSSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTEEE
T ss_pred EEE----ECCCCCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCC----------EEEEEecCCCc
Confidence 542 111124567777654322 111111 122345688999888877665432 34444333221
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC---ceeEEEEccCCC
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGR 525 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~ 525 (712)
...+ +.. ......++ +++..++++...+. .|..++..++. .+..+..+ ....+++.|++.
T Consensus 201 ~~~~-~~~-~~~P~gi~--~d~~~lyva~~~~~--~v~~~d~~~g~------~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 201 RRKV-LEG-LQYPFAVT--SYGKNLYYTDWKTN--SVIAMDLAISK------EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEE-EEC-CCSEEEEE--EETTEEEEEETTTT--EEEEEETTTTE------EEEEECCSSCCCCCCEEEECSCC
T ss_pred eEEE-ecC-CCCceEEE--EeCCEEEEEECCCC--eEEEEeCCCCC------ceEEEccccccccceeeecCccC
Confidence 1111 111 22334555 45677777665432 88888886544 44555422 357788888875
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=90.70 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=66.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEecc----CCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVD----PETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d----~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
+..+.+.|+-...+ -.+-++.+|++.|++||.|.+ +.++.+ +++|+++||+||+|.+.++|.+|++.|||..+
T Consensus 124 s~v~~l~n~v~~~e-~~~e~~~dl~~e~~~~G~v~~--~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 124 STVMVLRNMVDPKD-IDDDLEGEVTEECGKFGAVNR--VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CSEEEEESSCCGGG-CCTTHHHHHHHHHTTTSCEEE--EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cccchhhcCCCHHH-HHHHHHHHHHHHHHccCCeEE--EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 45566666543222 124578899999999999999 999854 45669999999999999999999999999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+|+ .+.+..+.
T Consensus 201 ~gr-~i~~~~~~ 211 (222)
T 3dxb_A 201 AGR-KVVAEVYD 211 (222)
T ss_dssp SSS-BCEEEECC
T ss_pred CCe-EEEEEEcC
Confidence 997 77777654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-06 Score=95.15 Aligned_cols=165 Identities=7% Similarity=-0.042 Sum_probs=95.2
Q ss_pred CCCc-ccceEEEc-CCCcEEEEEecC-c-----eEEeecccCc-ceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 211 RSYW-TESFVQWS-PLGTYLATVHRQ-G-----AAVWGGANTF-NRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 211 ~~~~-~v~~v~~S-pdg~~lat~~~~-~-----i~iw~~~~~~-~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
+|.. .+..++|| |||++||++... | |.++++. ++ ..+.. .... ...+.|||||+.|+....+..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~-~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~---- 243 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS-DPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDET---- 243 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT-CTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTT----
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC-CCCEeCCc-cccCceeeEEEecCCCEEEEEEECCC----
Confidence 3443 67789999 999999987642 1 7788998 55 42211 1111 457899999999988876521
Q ss_pred CCCccEEEEEEccCCce--eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCcee-c
Q 005140 281 DANRVVINIFDVRTGKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTL-I 353 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~-~ 353 (712)
.....|+++++.++.. ...+....... +..+.||| ||++|+... ...|.++++.++.. .
T Consensus 244 -~~~~~v~~~~lgt~~~~~~lv~~~~~~~~------------~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 244 -LRENKVWRHVMGKLQSEDVCLYEEHNPLF------------SAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp -CCEEEEEEEETTSCGGGCEEEEECCCTTC------------EEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred -CCCCEEEEEECCCCchhcEEEEecCCCce------------EEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCc
Confidence 1114788899877642 22222211111 11578999 999888665 45688888876421 1
Q ss_pred --ccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 354 --DKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 354 --~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
..... .......+.|+. |..|++.+... .....+|+.++...
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~--~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHG-TSHLVILTNEG--GAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEESSCCCTTCCEEEEEET-TTEEEEEECTT--TCTTCEEEEEETTS
T ss_pred eeEEeecCCCCceEEEeeee-CCEEEEEeCCC--CCCCcEEEEEcCCC
Confidence 11111 111223333332 66665532211 13567888888764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.1e-06 Score=80.10 Aligned_cols=180 Identities=11% Similarity=0.018 Sum_probs=119.8
Q ss_pred ceEEEcCCCcEEEEEec---CceEEeecccCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHR---QGAAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~---~~i~iw~~~~~~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++|+|||.+.++.+. +.|.+.|.. +++.+.++..+. ...+++ +|+.|..+.... +.+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~---------~~v~vi 91 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQ-TGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLK---------NIGFIY 91 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETT-TCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTC---------SEEEEE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECC-CCCEEEEEecCCCcceEEEEE--eCCEEEEEEecC---------CEEEEE
Confidence 56899999866665543 238899999 888887765332 334555 455665555431 789999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCee
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVM 364 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~ 364 (712)
|..+++.+.++... ... ....++ ||+.++.+. ++.|.++|..+.+.+....... ..++
T Consensus 92 D~~t~~v~~~i~~g-~~~--------------g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQ-MKD--------------GWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp ETTTTEEEEEEECC-SSS--------------CCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred ECCCCcEEEEEECC-CCC--------------eEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 99999999988654 111 123556 777666555 8899999999887765543322 2366
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-------------ecceeEEECcCCCEEEEEEccc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-------------VSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
.+.|. +|...+. ......|..++..+.+.+....+.. .....++|+|+++.+++.....
T Consensus 156 ele~~-dg~lyvn-------~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 156 ELEYI-NGEVWAN-------IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEE-TTEEEEE-------ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred eEEEE-CCEEEEe-------cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 78888 6643332 2234578999999888766655431 1224678999999888876654
Q ss_pred c
Q 005140 432 T 432 (712)
Q Consensus 432 ~ 432 (712)
.
T Consensus 228 ~ 228 (266)
T 2iwa_A 228 P 228 (266)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-05 Score=87.30 Aligned_cols=306 Identities=11% Similarity=0.064 Sum_probs=162.2
Q ss_pred CCcEEEEEecCc-eEEeecccCcceeeeecCC-C---eeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 224 LGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-Q---VKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 224 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~---v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
++..|++++.++ +..+|.. +++.+-++... . ...+.-+| .+..+++++.... ....+.|..||..+|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~----~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAA-TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE----YGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETT-TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT----TCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECC-CCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc----cCCCCEEEEEECCCCc
Confidence 355677777776 8889988 77766555432 1 01111112 2344555443100 0112789999999999
Q ss_pred eeeeccCCCcccccCC------------C--C-----CcCCCCcCeEEecCCCCCEEEEec-CC----------------
Q 005140 297 VMRDFKGSADEFAVGG------------T--G-----GVAGVSWPVFRWGGGKDKYFAKLG-KN---------------- 340 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~------------~--~-----~~~~~~~~~~~~s~~dg~~la~~~-d~---------------- 340 (712)
.+..+........... . + ...+..|..+.+++ ++..++.+. ++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCe
Confidence 9877755322100000 0 0 00112355678899 888777665 43
Q ss_pred ---eEEEEEcCCceeccccccccc---------CeeeEEECCCC---CeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 341 ---MISVYETESFTLIDKKSLKVE---------NVMDFSWSPTD---PIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 341 ---~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~sp~~---~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
.|..+|..+++.+........ ...-+....+| ..|++ .+..+.++.++..+.+.+...
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~-------~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH-------APKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE-------CCTTSEEEEEETTTCCEEEEE
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE-------ECCCCEEEEEECCCCCEeccc
Confidence 488999999987765433211 11112222356 44554 445567888888777765544
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEc
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~ 483 (712)
.+....-. -.+...|+.+.....+ + .+.+ ....++..+ .-..++++|++..+++...
T Consensus 354 ~~~~~~~~-~~~d~~g~~~~~~~~~--------~----------~~~~--~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 354 NFVPVNWA-SGYDKHGKPIGIAAAR--------D----------GSKP--QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp ESSCCSSE-EEECTTSCEEECGGGG--------C----------TTSC--EECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred cccccCcc-cccCCCCceeeccccC--------c----------CCCc--cEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 32221100 0011122211100000 0 0000 011111011 1125678888877777554
Q ss_pred C-------------C---------------------------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEcc
Q 005140 484 D-------------S---------------------------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSP 522 (712)
Q Consensus 484 d-------------~---------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~sp 522 (712)
+ + +...|..||+.+++ .+-.+. +.+.....++.
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~------~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK------AAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE------EEEEEEESSSCCCCEEEE
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc------EEeecCCCCCCcCcceEe
Confidence 2 0 01268888887665 222322 23445556777
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCCEEEE
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVAT 572 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~~l~t 572 (712)
+|..+++++. +|.+++||..+++++.+... ...+-+.|+++|+.++.
T Consensus 487 ~g~~v~~g~~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 487 AGNVVFQGTA---DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCEEEEECC---CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 8888888876 99999999999999876332 23345677889974443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.5e-06 Score=93.04 Aligned_cols=255 Identities=7% Similarity=-0.020 Sum_probs=135.2
Q ss_pred CeeEEEec-CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 255 QVKLIDFS-PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 255 ~v~~i~~S-pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
.+..++|| |||++||.+.... +....+|+++|+.+| +.+.. ..... ...+.|+| ||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~-----G~~~~~l~v~dl~~g~~~l~~---~~~~~------------~~~~~Wsp-Dg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMS-----GNEVYTIEFKRISDPSQTIAD---KVSGT------------NGEIVWGP-DHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESS-----SSSCEEEEEEETTCTTCCCCC---CEEEE------------CSCCEECS-STT
T ss_pred EEeeeEecCCCCCEEEEEEeCC-----CCceEEEEEEECCCCCEeCCc---cccCc------------eeeEEEec-CCC
Confidence 37789999 9999999776531 111147999999888 63211 00000 11579999 999
Q ss_pred EEEEec-C-----CeEEEEEcCCceeccccccc---ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ce
Q 005140 333 YFAKLG-K-----NMISVYETESFTLIDKKSLK---VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-EL 402 (712)
Q Consensus 333 ~la~~~-d-----~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~ 402 (712)
.|+... + ..|.++++.++......... ..-...+.|||||++|++... ......||++++.... ..
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~----~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ----SPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE----CSSCEEEEEEESSSCTTCC
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec----CCCCceEEEEECCCCCCCc
Confidence 888776 3 35777777665322111111 122567899999999987532 2346688888886542 11
Q ss_pred --eeeeeeeecceeEEECcC---CCEEEEEEcccccccccccccEEEEEEecCC-cceeEEEecCCCCceEEEEEeeCCC
Q 005140 403 --RQKNLFSVSDCKMYWQSS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 403 --~~~~~~~~~~~~~~~s~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
.... ... ....|+++ |..|++.++... .....||.++... ...... +..|...+.--.+++.++
T Consensus 310 ~~~~l~-~~~--~~~~~s~~~~~g~~l~~~t~~~~------a~~~~L~~~d~~~~~~~~~~-li~~~~~~~l~~~~~~~~ 379 (751)
T 2xe4_A 310 TLEIVR-PRE--KGVRYDVQMHGTSHLVILTNEGG------AVNHKLLIAPRGQPSDWSHV-LVDHSEDVFMESIAVRSN 379 (751)
T ss_dssp CEEESS-CCC--TTCCEEEEEETTTEEEEEECTTT------CTTCEEEEEETTSTTCCCCE-EECCCSSEEEEEEEECSS
T ss_pred eeEEee-cCC--CCceEEEeeeeCCEEEEEeCCCC------CCCcEEEEEcCCCcccceee-EECCCCCcEEEEEEEECC
Confidence 1111 001 11234454 888877776530 1124677766532 111110 223344333234455667
Q ss_pred EEEEEEcCCCCCeEEEEEe-------ecccccCceeEEEEeCCC-ceeEEEE----ccCCCeEEEE-eccCCCceEEEEE
Q 005140 477 RFAVIHGDSPRPDISFYSM-------RTAQHAGRVSKLTTLKGK-QANALFW----SPSGRFIVLA-GLKGFNGQLEFYN 543 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~-------~~~~~~~~~~~~~~~~~~-~v~~l~~----spdg~~l~~~-~~~~~dg~v~iwd 543 (712)
.|++.........|.++++ .++.. ...+ .+... .+..+.+ ++++..++.. +.....+.++.+|
T Consensus 380 ~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~---~~~l-~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d 455 (751)
T 2xe4_A 380 YLVVAGRRAGLTRIWTMMADSQDGVFKAGTG---LREV-VMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVS 455 (751)
T ss_dssp EEEEEEEETTEEEEEEEECCTTTSCCCTTTC---CEEC-CCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEEC
T ss_pred EEEEEEEeCCEEEEEEEecccccccccCCcc---ceEE-CCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 7776665433335666775 22210 1122 12222 1233333 4466655443 3222346788888
Q ss_pred CCcce
Q 005140 544 VDELE 548 (712)
Q Consensus 544 ~~~~~ 548 (712)
+.+++
T Consensus 456 ~~~~~ 460 (751)
T 2xe4_A 456 PQDHS 460 (751)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 87654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-05 Score=75.04 Aligned_cols=126 Identities=12% Similarity=0.162 Sum_probs=83.8
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
.+.+.+++|+. ...+.|++ +....+.+.. +...|+++|+.+|+.++.+.......
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~--------g~S~v~~vD~~tgkv~~~~~l~~~~f------------- 66 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR-GHLYESTGET--------GRSSVRKVDLETGRILQRAEVPPPYF------------- 66 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET-TEEEEEECCT--------TSCEEEEEETTTCCEEEEEECCTTCC-------------
T ss_pred eEEEEEcCCCCccccccEEEEC-CEEEEECCCC--------CCceEEEEECCCCCEEEEEeCCCCcc-------------
Confidence 45667777775 78999987 5555555554 11489999999999999887655432
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
...... +++.|.... ++.+.+||..+++++........+ ..+++++..|.+ .++..+|+.+|..+.
T Consensus 67 -geGi~~-~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~v-------Sdgs~~l~~iDp~t~ 134 (243)
T 3mbr_X 67 -GAGIVA-WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYM-------SDGTAVIRKLDPDTL 134 (243)
T ss_dssp -EEEEEE-ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEE-------ECSSSEEEEECTTTC
T ss_pred -eeEEEE-eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEE-------ECCCCeEEEEeCCCC
Confidence 122223 344444444 999999999999988765543333 344467777776 456778888887776
Q ss_pred cceee
Q 005140 400 EELRQ 404 (712)
Q Consensus 400 ~~~~~ 404 (712)
+.+..
T Consensus 135 ~~~~~ 139 (243)
T 3mbr_X 135 QQVGS 139 (243)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.8e-06 Score=83.80 Aligned_cols=264 Identities=10% Similarity=-0.068 Sum_probs=146.4
Q ss_pred CCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
+...+.++...++|.+.+. +.+ +..+|.. +..+..+.... ...+.+. +..|..++.+ +.|..
T Consensus 58 ~~~~~~~~~~~~~g~l~v~-t~~-l~~~d~~--g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~----------~~l~~ 121 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYFG-SDK-VYAINPD--GTEKWRFDTKKAIVSDFTIF--EDILYVTSMD----------GHLYA 121 (330)
T ss_dssp GGEEEECCEETTTTEECCS-SCE-EEEECCC--GGGGGGSCC-----CCEEEE--TTEEEEECTT----------SEEEE
T ss_pred CCCcccceEEecCCcEEEe-cCc-EEEECCC--CcEEEEEECCCCcccCceEE--CCEEEEEecC----------CEEEE
Confidence 3345577888888875554 333 7777754 33333332221 3333343 4556677777 78999
Q ss_pred EEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEEC
Q 005140 290 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 369 (712)
+|.. |+.+..+..+..... .+...+ ++.+++...++.|..|+.. ++.+.........+.++...
T Consensus 122 ~d~~-g~~~~~~~~~~~~~~-------------~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 122 INTD-GTEKWRFKTKKAIYA-------------TPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCS-------------CCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred EcCC-CCEEEEEcCCCceee-------------eeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 9987 777666554332221 356677 7776665558999999988 66655444444456777787
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+++...+. + ..++.++ ++.+.+............+...++|.. .+++.++ .++.+..
T Consensus 186 ~~g~l~v~------t----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~-----------gl~~~~~ 242 (330)
T 3hxj_A 186 KDGTIYFG------S----DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDG-----------HLYAINP 242 (330)
T ss_dssp TTCCEEEE------S----SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTT-----------EEEEECT
T ss_pred CCCEEEEE------e----CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCC-----------eEEEECC
Confidence 78876653 2 3466666 444433332222223334455666654 4444332 2333333
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEE
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVL 529 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~ 529 (712)
.+........ ....+.++...+++ .|.+++.++ .|..++. ++.. .....+....+.++...++|+..+
T Consensus 243 ~g~~~~~~~~--~~~~~~~~~~~~~g-~l~v~t~~g---gl~~~d~-~g~~----~~~~~~~~~~~~~~~~d~~g~l~~- 310 (330)
T 3hxj_A 243 DGTEKWRFKT--GKRIESSPVIGNTD-TIYFGSYDG---HLYAINP-DGTE----KWNFETGSWIIATPVIDENGTIYF- 310 (330)
T ss_dssp TSCEEEEEEC--SSCCCSCCEECTTS-CEEEECTTC---EEEEECT-TSCE----EEEEECSSCCCSCCEECTTCCEEE-
T ss_pred CCCEeEEeeC--CCCccccceEcCCC-eEEEecCCC---CEEEECC-CCcE----EEEEEcCCccccceEEcCCCEEEE-
Confidence 3332222222 22333445555455 566666666 6888875 3221 122333444577788888887554
Q ss_pred EeccCCCceEEEEECC
Q 005140 530 AGLKGFNGQLEFYNVD 545 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~ 545 (712)
++. +|.+++....
T Consensus 311 gt~---~G~~~~~~~~ 323 (330)
T 3hxj_A 311 GTR---NGKFYALFNL 323 (330)
T ss_dssp ECT---TSCEEEEEC-
T ss_pred EcC---CCeEEEEecc
Confidence 555 8988887765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=0.0011 Score=76.16 Aligned_cols=340 Identities=9% Similarity=0.031 Sum_probs=186.1
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeee---cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY---AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~---~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
+.++...++|.+.+.....|+..|+.. +....... ....|.++...++|.+.+..... | |.+||.
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~----------G-l~~~~~ 242 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSIT-QKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA----------G-LFLINP 242 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETT-TCCEEECC----CCCEEEEEEEETTEEEEEEBSS----------C-EEEEET
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCC-CCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC----------C-eEEEeC
Confidence 778888889987775545689999876 43322211 13348899888888876655444 3 888997
Q ss_pred cCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccc-------ccccccCee
Q 005140 293 RTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDK-------KSLKVENVM 364 (712)
Q Consensus 293 ~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~-------~~~~~~~v~ 364 (712)
.+++... +.... .... .......++...+ +|.+.+...+ .|.+|+..++....- ..+....|.
T Consensus 243 ~~~~~~~-~~~~~~~~~~------l~~~~i~~i~~d~-~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 313 (795)
T 4a2l_A 243 KTKEIKN-YLHSPSNPKS------ISSNYIRSLAMDS-QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVR 313 (795)
T ss_dssp TTTEEEE-ECCCTTCTTS------CSCSBEEEEEECT-TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEE
T ss_pred CCCeEEE-eecCCCCccc------cCCCeEEEEEEcC-CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEE
Confidence 6665433 32211 0000 0000011466677 7776654444 688898776543211 112334588
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceee----eeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQ----KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~----~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
++...++|.+-+. +.++. |..++..... .+.. ..+......++...++|.. .+++.++.
T Consensus 314 ~i~~D~~g~lWig------t~~~G--l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~G------ 378 (795)
T 4a2l_A 314 SIFMDSQGGMWLG------TYFGG--LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGG------ 378 (795)
T ss_dssp EEEECTTSCEEEE------ESSSC--EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSC------
T ss_pred EEEEeCCcCEEEE------ECCCC--eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCC------
Confidence 9998888875542 22222 3444432221 1110 0111222334445566653 34444322
Q ss_pred cccEEEEEEecCCcceeEEEec-------CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE--
Q 005140 439 YTGFELFRIKERDIPIEVLELD-------NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-- 509 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~-------~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-- 509 (712)
+..|+ ............ -....|.+++..++|+.|.+++.++ -|..|+..++.. ..+..
T Consensus 379 ---l~~~~--~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~---Gl~~~d~~~~~~----~~~~~~~ 446 (795)
T 4a2l_A 379 ---LNLYN--PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG---GLSILHRNSGQV----ENFNQRN 446 (795)
T ss_dssp ---EEEEC--TTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT---EEEEEETTTCCE----EEECTTT
T ss_pred ---eEEEc--CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC---ceeEEeCCCCcE----EEeecCC
Confidence 22222 211111111110 0135688898888888566666655 588888765431 12211
Q ss_pred --eCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec--------cccceeeEEECCCCCEEEEEEcccee
Q 005140 510 --LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA--------EHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 510 --~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--------~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
+....|.++...++|+..+.. . +.|.+|+..+++..... ....|.++..+++|+..+. +.
T Consensus 447 ~~l~~~~v~~i~~d~~g~lwigt-~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~---- 516 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGNLWLGT-L----SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE---- 516 (795)
T ss_dssp SCCSCSCEEEEEECSSSCEEEEE-S----SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES----
T ss_pred CCcCCCeeEEEEECCCCCEEEEe-c----CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC----
Confidence 223468889988888765543 2 35888998866543321 2256889999999985443 33
Q ss_pred ccccEEEEEecCceeee--------ecccceeeeEEecCCCCCC
Q 005140 580 MENGFNIWSFNGKLLYR--------TLKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 580 ~d~~v~iw~~~g~~~~~--------~~~~~i~~~~w~p~~~~l~ 615 (712)
+++..|+..+..... .....+.++...+++...+
T Consensus 517 --~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 558 (795)
T 4a2l_A 517 --EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWV 558 (795)
T ss_dssp --SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEE
T ss_pred --CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEE
Confidence 467788776443310 1224577777777777544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0008 Score=77.14 Aligned_cols=344 Identities=9% Similarity=0.038 Sum_probs=188.8
Q ss_pred CcccceEEEcCCCcEEEEEecCceEEeecccCcceee-ee--------cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 213 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLM-RY--------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~-~~--------~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
...|.++...++|.+.+....+|+.+|+.. +..... .. ....|.++...++|...+.. ..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~--------- 282 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPK-TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN--------- 282 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETT-TTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS---------
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCC-CCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC---------
Confidence 456788888889988777667789999987 433221 11 12349999999998866544 33
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecc--c----cc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLID--K----KS 357 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~--~----~~ 357 (712)
| |.+|+..++.............. ...-...++...+ +|.+-+...++.|..|+..+..... . ..
T Consensus 283 -G-l~~~~~~~~~~~~~~~~~~~~~~------l~~~~i~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 353 (795)
T 4a2l_A 283 -D-LNIYHEGTDSFASYSSNPVENGS------LSQRSVRSIFMDS-QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNS 353 (795)
T ss_dssp -C-EEEEETTTTEEEEECCCTTSTTS------CSSSCEEEEEECT-TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSS
T ss_pred -h-hheEcCCCCeEEEEecCCCCCCC------CCCCcEEEEEEeC-CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCC
Confidence 3 78899766654332211110000 0000011466777 7776665557788888866443211 1 11
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee--------eeeeecceeEEECcCCCEEEEEEc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK--------NLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
+....|.++...++|.+.+. +.++. |..++..+....... .+.......+...++|..|.+++.
T Consensus 354 l~~~~V~~i~~d~~g~lWiG------t~~~G--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~ 425 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWIG------TNDGG--LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH 425 (795)
T ss_dssp CSCSSEEEEEECTTSCEEEE------ESSSC--EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeeEEEEECCCCCEEEE------ECCCC--eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence 22345888888888775542 22222 445554433211100 111122334455567764555554
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEec---CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELD---NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK 506 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~---~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~ 506 (712)
++. |+.++............ .+...|.++...++|...+.. .. .|.+|+..++.. ..
T Consensus 426 ~~G-----------l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~----Gl~~~~~~~~~~----~~ 485 (795)
T 4a2l_A 426 AGG-----------LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS----ALVRFNPEQRSF----TT 485 (795)
T ss_dssp TTE-----------EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS----CEEEEETTTTEE----EE
T ss_pred cCc-----------eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC----ceeEEeCCCCeE----EE
Confidence 322 33333322222111110 124578888888888755544 44 488888754321 12
Q ss_pred EE------EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-------eccccceeeEEECCCCCEEEEE
Q 005140 507 LT------TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-------TAEHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 507 ~~------~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-------~~~~~~v~~~~~spdg~~l~t~ 573 (712)
+. .+....+.++...++|+..+... +.|..|+..+.+... ......|.++..+++|+..+ +
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-----~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-g 559 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-----EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWV-G 559 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEE-E
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-----CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEE-E
Confidence 21 11234578899999998665442 358888877655411 12335688999999998443 4
Q ss_pred EccceeccccEEEEEecCceeeee------cccceeeeEEecCCCCCCC
Q 005140 574 VTSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFLT 616 (712)
Q Consensus 574 s~~~~~~d~~v~iw~~~g~~~~~~------~~~~i~~~~w~p~~~~l~s 616 (712)
+. +++..|+......... ....|.++...++|...++
T Consensus 560 T~------~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~ 602 (795)
T 4a2l_A 560 TR------EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLS 602 (795)
T ss_dssp ES------SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred eC------CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEE
Confidence 44 3777888665433322 1245777777777765444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-05 Score=76.89 Aligned_cols=124 Identities=6% Similarity=0.053 Sum_probs=80.1
Q ss_pred ceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 246 NRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 246 ~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
+.+.+++|+. ...+.|+. +...++.+.+ +.|+++|+.+|+.++.+ ....... .
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~----------g~v~~iD~~Tgkv~~~~-l~~~~Fg-------e----- 99 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQ----------GTLRQLSLESAQPVWME-RLGNIFA-------E----- 99 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTT----------TEEEECCSSCSSCSEEE-ECTTCCE-------E-----
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCC----------CEEEEEECCCCcEEeEE-CCCCcce-------e-----
Confidence 4566777764 67899983 5556666666 78999999999988887 4333220 0
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
.+.... +.-|+++..++.+.+||..+++++........+ ..+++++..|.. .++..+|+.+|..+.+.+
T Consensus 100 Git~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~v-------SdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 100 GLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVR-------SDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp EEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEE-------ECSSSEEEEECTTTCCEE
T ss_pred EEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEE-------ECCCCEEEEEcCCCCeEE
Confidence 133333 322333333999999999999988765543322 334467777776 345778888887666544
Q ss_pred ee
Q 005140 403 RQ 404 (712)
Q Consensus 403 ~~ 404 (712)
..
T Consensus 169 ~~ 170 (268)
T 3nok_A 169 GA 170 (268)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-05 Score=80.06 Aligned_cols=295 Identities=9% Similarity=-0.041 Sum_probs=160.1
Q ss_pred ceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 217 SFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
.++....+|.+.+.....++..|| . +++.+..+..+. +.++...++|...+ +.. + |..+|. +
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v--~t~----------~-l~~~d~-~ 86 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-T-DGSVKWFFKSGEIIECRPSIGKDGTIYF--GSD----------K-VYAINP-D 86 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-T-TSCEEESSCGGGEEEECCEETTTTEECC--SSC----------E-EEEECC-C
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-C-CCcEEEEEecCCCcccceEEecCCcEEE--ecC----------c-EEEECC-C
Confidence 456776777655444345588999 6 566555443322 56777777776443 334 5 888885 7
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
|+.+..+..+..... ..... ++.+.+...++.|..++.. +............+.++...+++..
T Consensus 87 g~~~~~~~~~~~~~~-------------~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l 150 (330)
T 3hxj_A 87 GTEKWRFDTKKAIVS-------------DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI 150 (330)
T ss_dssp GGGGGGSCC-----C-------------CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE
T ss_pred CcEEEEEECCCCccc-------------CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE
Confidence 776655543322110 12222 3444444448899999988 6655444333344666777777775
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
++. +. ...++.++.. .+.+............+...++|...+ ++ +. ++.++..+...
T Consensus 151 ~vg------t~--~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~-----------l~~~d~~g~~~ 207 (330)
T 3hxj_A 151 YVG------SN--DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK-----------VYAINPDGTEK 207 (330)
T ss_dssp EEE------CT--TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS-----------EEEECTTSCEE
T ss_pred EEE------cC--CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE-----------EEEECCCCcEE
Confidence 552 22 2456677765 443322222222233344556666443 33 22 33333222222
Q ss_pred eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 455 EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
.....+...+.+++..++|.. .+++.++ .|..++. ++. .+..+. ...+..+.+.++|. |.+++.
T Consensus 208 --~~~~~~~~~~~~~~~~~~g~l-~v~t~~~---gl~~~~~-~g~------~~~~~~~~~~~~~~~~~~~~g~-l~v~t~ 273 (330)
T 3hxj_A 208 --WNFYAGYWTVTRPAISEDGTI-YVTSLDG---HLYAINP-DGT------EKWRFKTGKRIESSPVIGNTDT-IYFGSY 273 (330)
T ss_dssp --EEECCSSCCCSCCEECTTSCE-EEEETTT---EEEEECT-TSC------EEEEEECSSCCCSCCEECTTSC-EEEECT
T ss_pred --EEEccCCcceeceEECCCCeE-EEEcCCC---eEEEECC-CCC------EeEEeeCCCCccccceEcCCCe-EEEecC
Confidence 222223455777888877754 4455555 6777763 222 222222 22345566666775 455555
Q ss_pred cCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 533 KGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|.|..+|. +++.+.. .....+.++..+++|+. ..++. +|.+.+....
T Consensus 274 ---~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~-----~G~~~~~~~~ 323 (330)
T 3hxj_A 274 ---DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTR-----NGKFYALFNL 323 (330)
T ss_dssp ---TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECT-----TSCEEEEEC-
T ss_pred ---CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcC-----CCeEEEEecc
Confidence 788999996 4555443 23456677888888874 45666 6777776543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-05 Score=87.46 Aligned_cols=317 Identities=8% Similarity=0.058 Sum_probs=167.0
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-cCC-CCCcCCCCcCeEEecCCCCCEEEEec-CCe
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-VGG-TGGVAGVSWPVFRWGGGKDKYFAKLG-KNM 341 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~s~~dg~~la~~~-d~~ 341 (712)
+..|++++.+ +.|..+|..+|+.+-.+........ ... +..+.. .+.. ++..++.++ ++.
T Consensus 70 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~---~~g~v~v~~~dg~ 132 (689)
T 1yiq_A 70 DGVMYTTGPF----------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR----GVAV---WKGKVYVGVLDGR 132 (689)
T ss_dssp TTEEEEECGG----------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC----CCEE---ETTEEEEECTTSE
T ss_pred CCEEEEEcCC----------CeEEEEECCCCceeEEEcCCCCccccccccccCCCC----ccEE---ECCEEEEEccCCE
Confidence 5566777777 7899999999999888765432110 000 000000 1222 234455555 999
Q ss_pred EEEEEcCCceeccccccc--ccCeeeEEECC---CCCeEEEEeecCCCCC----CCeEEEEEecCCccceeeeeee----
Q 005140 342 ISVYETESFTLIDKKSLK--VENVMDFSWSP---TDPIISLFVPELGGGN----QPARVSLVQIPSKEELRQKNLF---- 408 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp---~~~~la~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~---- 408 (712)
|..+|..+|+.+...... ......+..+| ++ .+++ ++.. ....|+-++..+.+.+-.....
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~v-----g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 206 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVI-----GNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDP 206 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEE-----CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEE-----EeCCCccCCCCEEEEEECCCCcEEEEecccCCCc
Confidence 999999999987655432 11111222233 33 3333 2211 2456777776665533221100
Q ss_pred ---------------------------eecceeEEECcCCCEEEEEEccccc---------ccccccccEEEEEEecC-C
Q 005140 409 ---------------------------SVSDCKMYWQSSGDYLAVKVDRYTK---------TKKSTYTGFELFRIKER-D 451 (712)
Q Consensus 409 ---------------------------~~~~~~~~~s~~g~~l~~~~~~~~~---------~~~~~~~~~~l~~l~~~-~ 451 (712)
...-..+.++|++..+++++.+... .+...|.. .++-++.. +
T Consensus 207 ~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~-~v~AlD~~TG 285 (689)
T 1yiq_A 207 KLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS-SIVAVNADTG 285 (689)
T ss_dssp TSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT-EEEEEETTTC
T ss_pred ccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee-eEEEEEccCC
Confidence 0000134667888888887765420 00001111 23333332 2
Q ss_pred cceeEEEecCCC-------CceEEEEEeeCCC---EEEEEEcCCCCCeEEEEEeecccccCcee-----EEEE-------
Q 005140 452 IPIEVLELDNKN-------DKIIAFAWEPKGH---RFAVIHGDSPRPDISFYSMRTAQHAGRVS-----KLTT------- 509 (712)
Q Consensus 452 ~~~~~~~l~~h~-------~~v~~~~~sp~g~---~l~~~~~d~~~~~v~i~d~~~~~~~~~~~-----~~~~------- 509 (712)
...-......|. .++.......+|+ .++.++.++ .++++|..+++...... -...
T Consensus 286 ~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~ 362 (689)
T 1yiq_A 286 EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG---FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR 362 (689)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEEEEEESSCCSSEEEEETTTTE
T ss_pred ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC---eEEEEECCCCCEeccccccccccccccCccCCC
Confidence 222222222222 1222223333665 677777777 89999987765310000 0000
Q ss_pred -------------------eC----CCceeEEEEccCCCeEEEEecc---------------------------------
Q 005140 510 -------------------LK----GKQANALFWSPSGRFIVLAGLK--------------------------------- 533 (712)
Q Consensus 510 -------------------~~----~~~v~~l~~spdg~~l~~~~~~--------------------------------- 533 (712)
.+ ++.-..++++|+...+++....
T Consensus 363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 00 0011237899988887775321
Q ss_pred ---------CCCceEEEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeeccc--
Q 005140 534 ---------GFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD-- 600 (712)
Q Consensus 534 ---------~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~-- 600 (712)
..+|.|..||+.+++.+-+.. ........++..|..|++++. |+.++.||.. |+.+.+....
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~-----dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA-----DGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSC
T ss_pred cccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC-----CCcEEEEECCCCccceeeeCCCC
Confidence 014889999999999876533 233444567778888889888 9999999976 7777555321
Q ss_pred -ceeeeEEecCCCC
Q 005140 601 -HFFQFLWRPRPPS 613 (712)
Q Consensus 601 -~i~~~~w~p~~~~ 613 (712)
...-+.|..+|+.
T Consensus 518 ~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 518 VMAAPVTYSVDGEQ 531 (689)
T ss_dssp CCSCCEEEEETTEE
T ss_pred cccCceEEEECCEE
Confidence 1223556666653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-05 Score=73.77 Aligned_cols=180 Identities=12% Similarity=0.140 Sum_probs=120.6
Q ss_pred ceEEEcCCCcEEEEEecCc---eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 217 SFVQWSPLGTYLATVHRQG---AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~---i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+.|+ +|.+..+.+.+| |+++|.. +++.+.+...+. .......+++..|....... +.+.+||.
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~---------~~v~v~D~ 114 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN---------GLGFVWNI 114 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECCTTCCEEEEEEETTEEEEEESSS---------SEEEEEET
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecCCccceeEEEEeCCEEEEEEeeC---------CEEEEEEC
Confidence 568898 777777776654 8899999 888888776443 44444444566666555431 78999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeE
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDF 366 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~ 366 (712)
.+++.+.++...... |. ++ + |++.|+.+. ++.|.++|..+++.+....... ..++.+
T Consensus 115 ~t~~~~~ti~~~~eG-------------~g-lt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 115 RNLRQVRSFNYDGEG-------------WG-LT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp TTCCEEEEEECSSCC-------------CC-EE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred ccCcEEEEEECCCCc-------------eE-Ee--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 999999999865422 32 44 4 677666555 8889999999988776554422 335667
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee------------ecceeEEECcCCCEEEEEEcccc
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS------------VSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.|. +|...+. .-....|..+|..+.+.+....+.. .....++|+|+++.|++......
T Consensus 178 e~~-~G~lyan-------~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 178 EWV-DGEIFAN-------VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEE-TTEEEEE-------ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred EEE-CCEEEEE-------EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 886 5654332 2233478888888877655544321 11235789999999988877655
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00096 Score=66.59 Aligned_cols=223 Identities=8% Similarity=-0.032 Sum_probs=121.8
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.++|++ +++++++.. ++.|..|+.... ..... ........++++|+|+++++ .......+|+.++..+.+.
T Consensus 36 gia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~va-----d~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 36 NLASAP-DGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVAT-----GWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEE-----EECTTSCEEEEEECTTSCE
T ss_pred eEEECC-CCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEE-----eccCCcceEEEEcCCCCeE
Confidence 589999 998777665 889999987643 22111 11234788999999986554 2122334677777655442
Q ss_pred eeeeeeeee-cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE---------ecCCCCceEEEEE
Q 005140 402 LRQKNLFSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---------LDNKNDKIIAFAW 471 (712)
Q Consensus 402 ~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---------l~~h~~~v~~~~~ 471 (712)
......... ....+...+++ .+++..... -.+|.++.......... ....-.....+
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~----------g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDT-QYLTADSYR----------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSS-EEEEEETTT----------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEEeCCCccccCcccccCCC-cEEEEECCC----------CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 211111000 00011112233 333322111 14555554321101110 00111234445
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeec-ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRT-AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET- 549 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~- 549 (712)
+|++++|+++.... ..|..|++.. +.. .....+..+ .....++++++|+++++... .+.|.+++.. ++.
T Consensus 175 s~dg~~lyv~d~~~--~~I~~~~~~~~g~~-~~~~~~~~~--~~P~gi~vd~dG~l~va~~~---~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 175 KRFGNFLYVSNTEK--MLLLRIPVDSTDKP-GEPEIFVEQ--TNIDDFAFDVEGNLYGATHI---YNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEETTEEEEEETTT--TEEEEEEBCTTSCB-CCCEEEEES--CCCSSEEEBTTCCEEEECBT---TCCEEEECTT-CCEE
T ss_pred CcCCCEEEEEeCCC--CEEEEEEeCCCCCC-CccEEEecc--CCCCCeEECCCCCEEEEeCC---CCeEEEECCC-CCEE
Confidence 89998888776643 2899999864 211 111222222 34577999999987665544 6889999986 444
Q ss_pred -eeec--cccceeeEEEC---CCCCEEEEEEc
Q 005140 550 -MATA--EHFMATDVEWD---PTGRYVATAVT 575 (712)
Q Consensus 550 -~~~~--~~~~v~~~~~s---pdg~~l~t~s~ 575 (712)
+... .....++++|. |+++.|+.++.
T Consensus 246 ~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 246 IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 2222 22568899999 89888777765
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.4e-05 Score=70.34 Aligned_cols=179 Identities=9% Similarity=0.063 Sum_probs=116.0
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
..+.|+ ++.+..+.+.++ |.++|.. +++.+.+. .+. .......++|+.|....... +.+.+||..+
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~---------~~v~V~D~~T 125 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLE-SAQPVWME-RLGNIFAEGLASDGERLYQLTWTE---------GLLFTWSGMP 125 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSS-CSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS---------CEEEEEETTT
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECC-CCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC---------CEEEEEECCc
Confidence 457887 356666666666 8899999 78777666 333 43333334555554444321 6899999999
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeEEE
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDFSW 368 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~ 368 (712)
++.+.++...... | .++ + |++.|+.+. ++.|.++|..+++.+....... ..++.+.|
T Consensus 126 l~~~~ti~~~~eG-------------w-GLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 126 PQRERTTRYSGEG-------------W-GLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp TEEEEEEECSSCC-------------C-CEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CcEEEEEeCCCce-------------e-EEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 9999999864322 3 244 4 677666666 8999999999988776554422 23567788
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-------------ecceeEEECcCCCEEEEEEcccc
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-------------VSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
. +|...+. .-....|..+|..+.+.+....+.. .....++|+|+++.|++......
T Consensus 189 ~-dG~lyan-------vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 189 A-NGVIYAN-------IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp E-TTEEEEE-------ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred e-CCEEEEE-------ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 7 6653332 2223478888888887665544321 11235789999988888766554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=90.30 Aligned_cols=202 Identities=11% Similarity=0.071 Sum_probs=99.2
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeE
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMI 342 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i 342 (712)
++..|++++.+ +.|..||..+|+.+..+.. . .+. +..+.. ++..+++++ ++.|
T Consensus 8 ~~~~v~~gs~d----------g~v~a~d~~tG~~~W~~~~-~-~~~-------------s~p~~~-~g~~~v~~s~dg~l 61 (369)
T 2hz6_A 8 PETLLFVSTLD----------GSLHAVSKRTGSIKWTLKE-D-PVL-------------QVPTHV-EEPAFLPDPNDGSL 61 (369)
T ss_dssp CTTEEEEEETT----------SEEEEEETTTCCEEEEEEC-C-CSC-------------CCC------CCEEECTTTCCE
T ss_pred eCCEEEEEcCC----------CEEEEEECCCCCEEEEecC-C-Cce-------------ecceEc-CCCEEEEeCCCCEE
Confidence 57889999998 8999999999999888776 2 220 123445 777777655 9999
Q ss_pred EEEEcCCceecccccccccC-ee-eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 343 SVYETESFTLIDKKSLKVEN-VM-DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~-v~-~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
..||..+++.+.....+... +. ...++ .+..|++ + .....++.++..+++
T Consensus 62 ~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~-----g--~~dg~v~a~D~~tG~-------------------- 113 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYM-----G--KKQDIWYVIDLLTGE-------------------- 113 (369)
T ss_dssp EEC-----CCSEECSCCHHHHHTTCSCC------CCC-----C--EEEEEEEEECCC-----------------------
T ss_pred EEEECCCCceeeeeeccCccccccCceEe-cCCEEEE-----E--eCCCEEEEEECCCCc--------------------
Confidence 99999888765443332211 10 00111 2222322 1 112233333322211
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
.+|.+... . ...++|++..+++++.++ .|..||..++..
T Consensus 114 ----------------------~~w~~~~~------------~----~~~~~p~~~~v~~~~~dg---~v~a~d~~tG~~ 152 (369)
T 2hz6_A 114 ----------------------KQQTLSSA------------F----ADSLSPSTSLLYLGRTEY---TITMYDTKTREL 152 (369)
T ss_dssp ---------------------------------------------------------EEEEEEEE---EEECCCSSSSSC
T ss_pred ----------------------EEEEecCC------------C----cccccccCCEEEEEecCC---EEEEEECCCCCE
Confidence 12222110 0 123456778888888877 899999877653
Q ss_pred cCceeEEEEeCCCceeEEEEccCC---CeEEEEeccCCCceEEEEECCcceeeeecc-ccc-eeeEEECCCCCE
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSG---RFIVLAGLKGFNGQLEFYNVDELETMATAE-HFM-ATDVEWDPTGRY 569 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg---~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~-v~~~~~spdg~~ 569 (712)
..... . .....+++++++ ..+++++. +|.|+.||..+++.+-... ..+ +....++++|..
T Consensus 153 ~W~~~----~--~~~~~~~~~~~~~~~~~v~~~~~---dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 153 RWNAT----Y--FDYAASLPEDDVDYKMSHFVSNG---DGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCEEE----E--EEECCBCCCCCTTCCCCEEEEET---SCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEeEe----c--ccccCccccCCccccceEEEECC---CCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 21111 1 112233344432 45666666 8999999999988876532 223 334567777753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00031 Score=66.24 Aligned_cols=180 Identities=12% Similarity=0.124 Sum_probs=116.7
Q ss_pred ceEEEcCCCcEEEEEecC---ceEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 217 SFVQWSPLGTYLATVHRQ---GAAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~---~i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+.|++ +.+..+.+.. .|.++|.. +++.+.+...+. .......++++.|....... +.+.+||.
T Consensus 24 qGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~---------~~v~v~D~ 92 (243)
T 3mbr_X 24 EGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN---------HEGFVYDL 92 (243)
T ss_dssp EEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECCTTCCEEEEEEETTEEEEEESSS---------SEEEEEET
T ss_pred ccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC---------CEEEEEEC
Confidence 4688987 6666666654 38899999 888888776443 44343444455555554331 78999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeE
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDF 366 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~ 366 (712)
.+.+.+.++...... | .++ + +++.|+.+. ++.|.++|..+++.+....... ..++.+
T Consensus 93 ~tl~~~~ti~~~~~G-------------w-glt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-------------W-ALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp TTTEEEEEEECSSCC-------------C-EEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CcCcEEEEEeCCCCc-------------e-EEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 999999999865432 3 344 4 666555444 8999999999988776554432 345667
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-------------ecceeEEECcCCCEEEEEEcccc
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-------------VSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.|. +|...+- .-..-.|..+|..+.+.+....+.. .....++|+|+++.|++......
T Consensus 156 e~~-~G~lyan-------vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 156 EWV-NGELLAN-------VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp EEE-TTEEEEE-------ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred EEe-CCEEEEE-------ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 776 5554332 1123367788888877655443221 01134789999998888877655
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0022 Score=73.34 Aligned_cols=343 Identities=10% Similarity=0.073 Sum_probs=175.7
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeee---------ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR---------YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~---------~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
..|.++...++|.+.+.....|+..|+.. +.....- +....|.++...++|...+.. ..
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-~~---------- 230 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLN-DKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-SK---------- 230 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETT-TTEEEEECC--------CCSSEEEEEECTTCCEEEEE-TT----------
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCC-CCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-CC----------
Confidence 45778888888987775555589999887 4322111 112348899998888866643 33
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccc---------
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDK--------- 355 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~--------- 355 (712)
-|.+||..+++.. .+........ ...... ..++...+ +|.+.+....+.|.+++..+......
T Consensus 231 -Gl~~~d~~~~~~~-~~~~~~~~~~----~l~~~~-i~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~ 302 (781)
T 3v9f_A 231 -GLALFNANTETFT-NFHNNPGNIH----GALSSY-IFSIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIR 302 (781)
T ss_dssp -EEEEEETTTTEEE-C---------------CCCC-EEEEEECT-TSEEEEEESSSCEEEEETTCC---------CEEEC
T ss_pred -cHheECCCCCcEE-EEEcCCCccc----cccCce-EEEEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeecccccccc
Confidence 3888997665533 2221110000 000000 11456666 77766554457788888776543211
Q ss_pred -----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceee-------eeeeeecceeEEECcCC
Q 005140 356 -----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQ-------KNLFSVSDCKMYWQSSG 421 (712)
Q Consensus 356 -----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~-------~~~~~~~~~~~~~s~~g 421 (712)
..+....|.++...++|.+-+. +.++. |..++..... .+.. ..+.......+...++|
T Consensus 303 ~~~~~~~l~~~~v~~i~~D~~g~lWig------t~~~G--l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 374 (781)
T 3v9f_A 303 EGDNNYSLSNASARYIFQDSFNNIWIG------TWGGG--INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG 374 (781)
T ss_dssp BCSSTTSBSSSCEEEEEECSSCCEEEE------EBSSC--EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS
T ss_pred CCCCCCCCCCCeEEEEEEeCCCCEEEE------ecCCe--EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC
Confidence 1123345888888887764442 22222 3344433221 1110 01111222334445555
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 422 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
. |.+++..+. +..++ .......... .......|.+++..++|...+ ++..+ -|..|+..++.
T Consensus 375 ~-lWigt~~~G---------l~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~---Gl~~~~~~~~~ 438 (781)
T 3v9f_A 375 K-LWIGTDGGG---------INVFE--NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLG---NISYYNTRLKK 438 (781)
T ss_dssp C-EEEEEBSSC---------EEEEE--TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTE---EEEEECSSSCE
T ss_pred C-EEEEeCCCc---------EEEEE--CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccC---CEEEEcCCCCc
Confidence 4 334443222 22222 1111100000 011246788888877776555 55444 57778765432
Q ss_pred ccCceeEEE--EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-----ccceeeEEECCCCCEE
Q 005140 500 HAGRVSKLT--TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-----HFMATDVEWDPTGRYV 570 (712)
Q Consensus 500 ~~~~~~~~~--~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-----~~~v~~~~~spdg~~l 570 (712)
. ..+. .+....|.++...++|+..+ ++ .+.|..|+..+++.... .. ...|.++..+++|+..
T Consensus 439 ~----~~~~~~~~~~~~v~~i~~d~~g~lwi-gt----~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 439 F----QIIELEKNELLDVRVFYEDKNKKIWI-GT----HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp E----EECCSTTTCCCCEEEEEECTTSEEEE-EE----TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred E----EEeccCCCCCCeEEEEEECCCCCEEE-EE----CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence 1 1111 11234688888888886544 44 34588899876544322 11 3568899999999855
Q ss_pred EEEEccceeccccEEEEEecCceeeee------cccceeeeEEecCCCCCC
Q 005140 571 ATAVTSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~g~~~~~~------~~~~i~~~~w~p~~~~l~ 615 (712)
+ ++. .+++..|+..+..+... ....|.++...+++...+
T Consensus 510 i-gt~-----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 510 I-GTF-----GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp E-EES-----SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred E-EEc-----CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE
Confidence 4 443 35677777654433322 124567777777766444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00093 Score=66.68 Aligned_cols=228 Identities=10% Similarity=0.070 Sum_probs=120.8
Q ss_pred cceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 216 ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
...++|+|+|+++++-..++ |..|+..+. ....+... .+..++++|+|+.+++.... ....|..++..
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~~~~~p~gia~~~dG~l~vad~~~--------~~~~v~~~d~~ 103 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNA--------DSIPVVSLVKS 103 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECT--------TSCEEEEEECT
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEeCCCCceeEEEcCCCcEEEEeccC--------CcceEEEEcCC
Confidence 34689999999666665555 888888732 22223323 48899999999966654332 00246677777
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc--eec--cc------ccccccC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF--TLI--DK------KSLKVEN 362 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~--~~~--~~------~~~~~~~ 362 (712)
+|+............ .. .++..+ ++..+++-. ++.|.+++..++ +.. .. .......
T Consensus 104 ~g~~~~~~~~~~~~~-------~~-----g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 104 DGTVETLLTLPDAIF-------LN-----GITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp TSCEEEEEECTTCSC-------EE-----EEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred CCeEEEEEeCCCccc-------cC-----cccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 777533222111110 01 233345 555555554 888888887653 221 00 0011123
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee-e-ecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF-S-VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
...+ +|++..|.+. .....+|+.++......+.....+ . .....++++++|...++....+
T Consensus 171 pngi--s~dg~~lyv~------d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~--------- 233 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVS------NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN--------- 233 (306)
T ss_dssp EEEE--EEETTEEEEE------ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC---------
T ss_pred CCCc--CcCCCEEEEE------eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCC---------
Confidence 4555 7888776652 233456777776531111111111 1 1234467788997544332222
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEe---eCCCEEEEEEcCC
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWE---PKGHRFAVIHGDS 485 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s---p~g~~l~~~~~d~ 485 (712)
.+..++..+.......+...-...++++|. |+++.|+++...+
T Consensus 234 --~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 234 --SVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp --CEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred --eEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 233444333221111222223568899998 8988888777643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0016 Score=67.09 Aligned_cols=284 Identities=11% Similarity=0.023 Sum_probs=137.0
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEE
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMIS 343 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~ 343 (712)
++..|++++.+ +.|..+|..+|+.+..+............ ...+ ...+.. . ++..++...++.|.
T Consensus 52 ~~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~--~~~~-~~~~~~-~-~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 52 ADNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKE--PALL-SGGVTV-S-GGHVYIGSEKAQVY 116 (376)
T ss_dssp ETTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCC--CCCE-EEEEEE-E-TTEEEEEETTSEEE
T ss_pred ECCEEEEEcCC----------CeEEEEEccCCceeeeecCcccccccccc--Cccc-ccCceE-e-CCEEEEEcCCCEEE
Confidence 35677777777 78999999999987766543211000000 0000 001222 2 44444444489999
Q ss_pred EEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec-----ceeEEEC
Q 005140 344 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-----DCKMYWQ 418 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~s 418 (712)
.+|..+++.+................ +..+++ ++. ...++.++..+.+.+-........ ...+..
T Consensus 117 a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v-----~~~--~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~- 186 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLI-----HTS--NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT- 186 (376)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEE--TTEEEE-----ECT--TSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-
T ss_pred EEECCCCCEEEEEeCCCceEcCCEEE--CCEEEE-----EcC--CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-
Confidence 99999998776543332211111221 234443 222 335666776655543322211100 001111
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
.+..++++..++........+...+|......... ...+..-......... .+..+++++.++ .|..+|..++
T Consensus 187 -~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~~~p~~--~~~~v~~~~~~g---~l~~~d~~tG 259 (376)
T 3q7m_A 187 -AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSDVDTTPVV--VNGVVFALAYNG---NLTALDLRSG 259 (376)
T ss_dssp -ETTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCCCCCEE--ETTEEEEECTTS---CEEEEETTTC
T ss_pred -ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-CcccccccccCCCcEE--ECCEEEEEecCc---EEEEEECCCC
Confidence 12344444333221111111122344433211000 0000000000001111 345666766666 7888998766
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---ccceeeEEECCCCCEEEEEEc
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~spdg~~l~t~s~ 575 (712)
. .+..........+.. ++..+++++. ++.|..+|..+++.+-... ...+..+.. .+..|+.++.
T Consensus 260 ~------~~w~~~~~~~~~~~~--~~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 260 Q------IMWKRELGSVNDFIV--DGNRIYLVDQ---NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp C------EEEEECCCCEEEEEE--ETTEEEEEET---TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred c------EEeeccCCCCCCceE--ECCEEEEEcC---CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 5 333333333333333 4667777776 8999999999988765432 222333333 2567788887
Q ss_pred cceeccccEEEEEec-Cceeeee
Q 005140 576 SVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 576 ~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
++.+.+++.. |+.+...
T Consensus 327 -----~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 327 -----EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp -----TSEEEEEETTTCCEEEEE
T ss_pred -----CCeEEEEECCCCcEEEEE
Confidence 7889999965 6555443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.009 Score=68.19 Aligned_cols=343 Identities=10% Similarity=0.006 Sum_probs=176.0
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeee---------ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR---------YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~---------~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
..|.++...++|.+.+.... |+.+|+.. +.....- +....|.++...++|.+.+.....
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~---------- 278 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNAN-TETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN---------- 278 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETT-TTEEEC-----------CCCCEEEEEECTTSEEEEEESSS----------
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCC-CCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC----------
Confidence 45788999999987766544 89999976 3322111 123349999999888866544324
Q ss_pred cEEEEEEccCCceeeecc-------CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecc---
Q 005140 285 VVINIFDVRTGKVMRDFK-------GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLID--- 354 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~--- 354 (712)
-|.++|..++....... ...... ....-...++...+ +|.+-+...++-|..|+..+.....
T Consensus 279 -Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~l~~~~v~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~ 350 (781)
T 3v9f_A 279 -GIMILDLQQNQFLLPEQIRFEFIREGDNNY------SLSNASARYIFQDS-FNNIWIGTWGGGINFISNAPPTFHTWSY 350 (781)
T ss_dssp -CEEEEETTCC---------CEEECBCSSTT------SBSSSCEEEEEECS-SCCEEEEEBSSCEEEECSSCCSCEEEC-
T ss_pred -CeEEECCCCCeeeeeeccccccccCCCCCC------CCCCCeEEEEEEeC-CCCEEEEecCCeEEEeCCCCCcceeecc
Confidence 37888876654322111 000000 00000001456666 7766555547778888876433211
Q ss_pred ------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee---eeeeeecceeEEECcCCCEEE
Q 005140 355 ------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ---KNLFSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 355 ------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~ 425 (712)
...+....|.++...++|.+.+. +.++. |..++..+...... ..+.......+...++|...
T Consensus 351 ~~~~~~~~~l~~~~v~~i~~d~~g~lWig------t~~~G--l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW- 421 (781)
T 3v9f_A 351 SPTQMNESSLSNKVVSSVCDDGQGKLWIG------TDGGG--INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW- 421 (781)
T ss_dssp ---CCCSSCCSSSCEEEEEECTTSCEEEE------EBSSC--EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-
T ss_pred CccccccCCCCCcceEEEEEcCCCCEEEE------eCCCc--EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-
Confidence 11122345888888887775542 22222 44555433211100 01111223334445555533
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+++..+ .|+.+............ ......|.++...++|... +++. + -|..|+..++..
T Consensus 422 igt~~~-----------Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~---Gl~~~~~~~~~~---- 481 (781)
T 3v9f_A 422 FGTYLG-----------NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-A---GVFVIDLASKKV---- 481 (781)
T ss_dssp EEETTE-----------EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-T---EEEEEESSSSSC----
T ss_pred EEeccC-----------CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-C---ceEEEeCCCCeE----
Confidence 343321 23444332222211111 0124578888887777644 4444 3 588888765432
Q ss_pred eEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEEECCCCCEEEEEE
Q 005140 505 SKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 505 ~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~spdg~~l~t~s 574 (712)
..+.... ...+.++...++|++.+... .+-|..|+..+.+.... .....|.++..+++|+..+. +
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T 556 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF----GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-T 556 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEES----SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-E
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEc----CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-E
Confidence 2333222 24678899999998665543 34588888876544322 12356889999999985443 3
Q ss_pred ccceeccccEEEEEecCceeeee------cccceeeeEEecCCCCCC
Q 005140 575 TSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 575 ~~~~~~d~~v~iw~~~g~~~~~~------~~~~i~~~~w~p~~~~l~ 615 (712)
. .|.+..|+......... ....+.++...++|...+
T Consensus 557 ~-----~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~ 598 (781)
T 3v9f_A 557 G-----EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWA 598 (781)
T ss_dssp T-----TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEE
T ss_pred C-----CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEE
Confidence 3 23326666543322221 113455666666655433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0046 Score=63.86 Aligned_cols=224 Identities=5% Similarity=-0.100 Sum_probs=121.2
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCe
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
.|+.+++..+............. .+.|.+ .+..|.... .+.|..+++................
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~--------------gl~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p 161 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAI--------------ALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEE--------------EEEEET-TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC
T ss_pred cceeeccCCCcEEEEecCCCccE--------------EEEEec-CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc
Confidence 47788876554433333333332 589997 666655554 7889999987554222111222345
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
..+++.+.+..|.+. .....+|+.++.............-.....++..|.+.+|++...... -.
T Consensus 162 ~glavd~~~g~lY~~------d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~---------~~ 226 (386)
T 3v65_B 162 GGLAVDWVHDKLYWT------DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT---------PR 226 (386)
T ss_dssp CCEEEETTTTEEEEE------ETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS---------CE
T ss_pred cEEEEEeCCCeEEEE------cCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC---------CE
Confidence 678888866655442 222346666665433211111101112334567887777776544321 25
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
|+.+...+.....+. ...-.....++|+|++..|+.+.... ..|..++++.... ..+..........+++ ..
T Consensus 227 I~r~~~dG~~~~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~dG~~~----~~~~~~~~~~P~giav-~~ 298 (386)
T 3v65_B 227 IEASSMDGSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHR----KAVISQGLPHPFAITV-FE 298 (386)
T ss_dssp EEEEETTSCSCEEEE-CSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEECTTSCSC----EEEECSSCSSEEEEEE-ET
T ss_pred EEEEeCCCCCcEEEE-ECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCCCCee----EEEEECCCCCceEEEE-EC
Confidence 666665544332222 12234578899999888888876543 2788888754221 1222222223466777 33
Q ss_pred CCeEEEEeccCCCceEEEEECCcceee
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
+ .|+.+..+ .+.|..++..+++.+
T Consensus 299 ~-~ly~td~~--~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 299 D-SLYWTDWH--TKSINSANKFTGKNQ 322 (386)
T ss_dssp T-EEEEEETT--TTEEEEEETTTCCSC
T ss_pred C-EEEEeeCC--CCeEEEEECCCCcce
Confidence 3 45444432 678888885555443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-06 Score=87.93 Aligned_cols=178 Identities=12% Similarity=-0.013 Sum_probs=87.1
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--C-e-e
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--Q-V-K 257 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~-v-~ 257 (712)
+.+++...++.+..|+. ..++..-.+.. ..+.+..+.++|..+++++.++ +..||.. +++.+.++... . + .
T Consensus 10 ~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHTT
T ss_pred CEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeeccCcccccc
Confidence 35566777888889987 45555544444 4555566677888888877777 8899997 66554444321 1 1 1
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
+..++ ++..|++++.+ +.|..||..+|+.+..+..+.. ..++| ++..++++
T Consensus 86 sp~~~-~~~~v~~g~~d----------g~v~a~D~~tG~~~w~~~~~~~-----------------~~~~p-~~~~v~~~ 136 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQ----------DIWYVIDLLTGEKQQTLSSAFA-----------------DSLSP-STSLLYLG 136 (369)
T ss_dssp CSCC------CCCCEEE----------EEEEEECCC----------------------------------------EEEE
T ss_pred CceEe-cCCEEEEEeCC----------CEEEEEECCCCcEEEEecCCCc-----------------ccccc-cCCEEEEE
Confidence 11222 34567777777 8999999999998887765431 34567 77777777
Q ss_pred c-CCeEEEEEcCCceecccccccccCeeeEEECCCC---CeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 338 G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD---PIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 338 ~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~---~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+ ++.|..||..+++.+...... ......++++. ..+++ ++.+ ..++.++..+.+.+
T Consensus 137 ~~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~-----~~~d--g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 137 RTEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFV-----SNGD--GLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEE-----EETS--CEEEEECTTTCCEE
T ss_pred ecCCEEEEEECCCCCEEEeEecc--cccCccccCCccccceEEE-----ECCC--CEEEEEECCCCcEE
Confidence 7 899999999999877654322 12233344431 33433 2222 45667776665543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0073 Score=62.32 Aligned_cols=236 Identities=8% Similarity=-0.075 Sum_probs=125.1
Q ss_pred ceEEEcCCCcEEEEEecCceEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 217 SFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
+|.+..+ ..+|+.+....|+..++. +....... ....+..++|++.+..|...... .+.|..+++..+
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~-~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~---------~~~I~r~~~~g~ 148 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPH-RSEYTLLLNNLENAIALDFHHRRELVFWSDVT---------LDRILRANLNGS 148 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTT-SCCCEEEECSCSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSC
T ss_pred eECCccc-cceeEeecCccceeeccC-CCcEEEEecCCCccEEEEEecCCCeEEEEeCC---------CCcEEEEecCCC
Confidence 4555556 446666677778888887 33322222 23458899999877766655433 168999997655
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCC
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 373 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (712)
.....+...... +. .+++.+ .+..|.... .+.|.++++..................+++.|.+.
T Consensus 149 ~~~~~~~~~~~~--------p~-----glavd~-~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 149 NVEEVVSTGLES--------PG-----GLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp CEEEEECSSCSC--------CC-----CEEEET-TTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CcEEEEeCCCCC--------cc-----EEEEEe-CCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC
Confidence 433322211111 11 356665 555444333 77888888764321111112234578899999877
Q ss_pred eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 374 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 374 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
.|.+. ......+|+.++.............-.....++|+|++..|+++..... .|+.+...+..
T Consensus 215 ~ly~t-----d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~----------~I~~~d~dG~~ 279 (386)
T 3v65_B 215 TIYWT-----DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH----------VIERANLDGSH 279 (386)
T ss_dssp EEEEE-----ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT----------EEEEECTTSCS
T ss_pred eEEEe-----ccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC----------EEEEEeCCCCe
Confidence 76652 1223467888876543211111101112335678888888877654432 45555443332
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
...+ +.........+++ . +..++.+.... ..|..++..+
T Consensus 280 ~~~~-~~~~~~~P~giav-~-~~~ly~td~~~--~~V~~~~~~~ 318 (386)
T 3v65_B 280 RKAV-ISQGLPHPFAITV-F-EDSLYWTDWHT--KSINSANKFT 318 (386)
T ss_dssp CEEE-ECSSCSSEEEEEE-E-TTEEEEEETTT--TEEEEEETTT
T ss_pred eEEE-EECCCCCceEEEE-E-CCEEEEeeCCC--CeEEEEECCC
Confidence 2222 2122344566777 2 33454444322 1676666433
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0012 Score=73.57 Aligned_cols=308 Identities=12% Similarity=0.098 Sum_probs=153.0
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCC---CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHP---QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~---~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
+..|++++.++ +..+|.. +++.+-++... ....+.-+| .+..++++.... .....+.|..+|..+|+.+
T Consensus 117 ~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~----~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAK-TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGA----EYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp BTEEEEECTTSEEEEEETT-TCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCT----TTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECC-CCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCC----CcCCCCEEEEEECCCCcEE
Confidence 55677777676 7788988 77766554321 111122222 133444443220 0012278999999999998
Q ss_pred eeccCCCcccccCCC------------C------CcCCCCcCeEEecCCCCCEEEEec-CC-------------------
Q 005140 299 RDFKGSADEFAVGGT------------G------GVAGVSWPVFRWGGGKDKYFAKLG-KN------------------- 340 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~------------~------~~~~~~~~~~~~s~~dg~~la~~~-d~------------------- 340 (712)
..+............ + .-.+..|..+++.+ ++..++.+. ++
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 877532110000000 0 01123466688888 777776665 44
Q ss_pred eEEEEEcCCceeccccccccc---------CeeeEEECCCCC---eEEEEeecCCCCCCCeEEEEEecCCccceeeeeee
Q 005140 341 MISVYETESFTLIDKKSLKVE---------NVMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 408 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (712)
.|..+|..+|+.+........ ......+..+|+ .+++ .+..+.++.++..+.+.+....+.
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~-------~~~~G~l~~lD~~tG~~l~~~~~~ 343 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQ-------APKNGFFYVLDRTNGKLISAEKFG 343 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE-------CCTTSEEEEEETTTCCEEEEEESS
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEE-------ECCCCEEEEEECCCCCEecccccc
Confidence 488999999988765543211 111112223454 3444 455667888888877766443322
Q ss_pred eecceeEEECc-CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCC
Q 005140 409 SVSDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 409 ~~~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~ 485 (712)
... ....+.+ .+.-+... . . .| .+. ..+.+++..+ .-..++++|+...+++...+.
T Consensus 344 ~~~-w~~~~d~~~g~p~~~~--~-~-----~~----------~~~--~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~ 402 (668)
T 1kv9_A 344 KVT-WAEKVDLATGRPVEAP--G-V-----RY----------EKE--PIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEV 402 (668)
T ss_dssp CCC-SEEEECTTTCCEEECT--T-T-----TC----------SSS--CEEESSCTTCSSCSSCCEEETTTTEEEEEEEEC
T ss_pred ccc-cccccccccCCccccc--c-c-----cc----------cCC--eeEECCCCccccCCCcceECCCCCEEEEecccc
Confidence 110 0000110 11111000 0 0 00 000 0011110000 011245555555444322100
Q ss_pred ---------------------------------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEe
Q 005140 486 ---------------------------------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 486 ---------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~ 531 (712)
....|..||+.+++. +-... ..+.....+...|..+++++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~------~W~~~~~~~~~~~~~~t~gg~vf~g~ 476 (668)
T 1kv9_A 403 PGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA------AWKVPYPTHWNGGTLSTAGNLVFQGT 476 (668)
T ss_dssp CEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE------EEEEEESSSCCCCEEEETTTEEEEEC
T ss_pred ceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE------EEEccCCCCCcCceeEeCCCEEEEEC
Confidence 002678888876652 22222 22334445556788888887
Q ss_pred ccCCCceEEEEECCcceeeeeccc-cc--eeeEEECCCCC-EEEEEEc
Q 005140 532 LKGFNGQLEFYNVDELETMATAEH-FM--ATDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~~~~~-~~--v~~~~~spdg~-~l~t~s~ 575 (712)
. +|.|+.||..+++.+..... .. ..-+.+..+|+ |++.++.
T Consensus 477 ~---dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 477 A---AGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp T---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred C---cccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 7 99999999999998865322 11 12355567787 6666654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00079 Score=75.20 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=150.8
Q ss_pred eEEEecC-CCCEEEEEcCCCCCCC-cCCCccEEEEEEccCCceee--eccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 257 KLIDFSP-GEKYLVTYSSHEPSNP-RDANRVVINIFDVRTGKVMR--DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 257 ~~i~~Sp-dg~~l~t~s~d~~~~~-~~~~~~~I~iwd~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
..+++.| +|+.++.|+.+..... .......+.+||..+++... .+..+.... ....++.. +++
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~------------~~~~~~~~-~g~ 255 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF------------CPGISMDG-NGQ 255 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS------------SCEEEECT-TSC
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc------------cccccCCC-CCC
Confidence 3667777 8888888876522110 01111368899998876322 222211111 11357778 999
Q ss_pred EEEEec--CCeEEEEEcCCceecccccccccC-eeeEEECCCCCeEEEEeecCCC-CCC---CeEEEEEecCCccceee-
Q 005140 333 YFAKLG--KNMISVYETESFTLIDKKSLKVEN-VMDFSWSPTDPIISLFVPELGG-GNQ---PARVSLVQIPSKEELRQ- 404 (712)
Q Consensus 333 ~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~la~~~~~~~~-~~~---~~~i~~~~~~~~~~~~~- 404 (712)
+++.++ +..+.+||..+........+.... -.+.+..++|+++++ |+ .++ ...++.|+..+..-...
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~-----GG~~~~~~~~~~~e~yd~~t~~W~~~~ 330 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-----GGSWSGGVFEKNGEVYSPSSKTWTSLP 330 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE-----CCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEE-----eCcccCCcccccceEeCCCCCcceeCC
Confidence 999988 568999998866533222222222 234566778988887 65 232 24577787765432111
Q ss_pred ----eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC-------CCCceEEEEEee
Q 005140 405 ----KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN-------KNDKIIAFAWEP 473 (712)
Q Consensus 405 ----~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-------h~~~v~~~~~sp 473 (712)
..+..... ...+..++..++++..++..........+..|+........ ...... ....-.++.+..
T Consensus 331 ~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~av~~~~ 408 (656)
T 1k3i_A 331 NAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAMCGNAVMYDA 408 (656)
T ss_dssp TSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCBTCEEEEEET
T ss_pred Cccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCCCCceEeccC
Confidence 01111100 01123455555555544321111112235556554332111 111100 011223444444
Q ss_pred -CCCEEEEEEcCC-----CCC---eEEEEEeecccccCceeEEE--EeCCCc-eeEEEEccCCCeEEEEeccC-------
Q 005140 474 -KGHRFAVIHGDS-----PRP---DISFYSMRTAQHAGRVSKLT--TLKGKQ-ANALFWSPSGRFIVLAGLKG------- 534 (712)
Q Consensus 474 -~g~~l~~~~~d~-----~~~---~v~i~d~~~~~~~~~~~~~~--~~~~~~-v~~l~~spdg~~l~~~~~~~------- 534 (712)
+++.+++++.+. ... .|.+||..+.. +..+. .++... ..+.+..|+|+.+++++...
T Consensus 409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 566666665421 011 46677764432 22332 233222 24567789999999988521
Q ss_pred -CCceEEEEECCcceeee--eccc--cceeeEEECCCCCEEEEEEc
Q 005140 535 -FNGQLEFYNVDELETMA--TAEH--FMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 535 -~dg~v~iwd~~~~~~~~--~~~~--~~v~~~~~spdg~~l~t~s~ 575 (712)
.-..+.+||..+.+-.. .... .......+.|+|+.+++|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 12568999987654322 1111 22234567899999999885
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0095 Score=60.46 Aligned_cols=241 Identities=6% Similarity=-0.093 Sum_probs=127.8
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
..|.+..++ .+|+.+... .|+..++........+....... .+.|.+ .+..|.
T Consensus 36 ~~C~~~~~~-~~ll~~~~~-----------~I~~i~~~g~~~~~~~~~~~~~~--------------~l~~d~-~~~~ly 88 (349)
T 3v64_C 36 RSCKALGPE-PVLLFANRI-----------DIRQVLPHRSEYTLLLNNLENAI--------------ALDFHH-RRELVF 88 (349)
T ss_dssp SCEEESSSC-CEEEEECBS-----------CEEEECTTSCCEEEEECSCSCEE--------------EEEEET-TTTEEE
T ss_pred CcccccccC-ceeEeeccc-----------ceEEEeCCCCeeEEeecCCCceE--------------EEEEec-cccEEE
Confidence 455555563 345544433 47777775544433333333232 589997 666665
Q ss_pred Eec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 336 KLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 336 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
.+. .+.|..+++..................+++.+.+..|.+. .....+|..++.............-....
T Consensus 89 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~------d~~~~~I~~~~~dG~~~~~l~~~~l~~P~ 162 (349)
T 3v64_C 89 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT------DSGTSRIEVANLDGAHRKVLLWQSLEKPR 162 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred EEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEE------cCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence 554 7889999887553221111122345788888866655441 22234677776654321111110111233
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
.++++|.+.+|++...... -.|+.+...+.....+ +...-.....++|+|++..|+.+.... ..|..+
T Consensus 163 ~iavdp~~g~ly~td~~~~---------~~I~r~~~dG~~~~~~-~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~ 230 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNT---------PRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERA 230 (349)
T ss_dssp EEEEETTTTEEEEEECSSS---------CEEEEEETTSCSCEES-CCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEE
T ss_pred eEEEecCcCeEEEeccCCC---------CEEEEEeCCCCCcEEE-EECCCCCcceEEEeCCCCEEEEEECCC--CEEEEE
Confidence 4567887777766554321 2566665544322111 111234578899999888888876543 278888
Q ss_pred EeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 494 SMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+++.... ..+..........+++ . +..|+.+..+ .+.|..++..+++.
T Consensus 231 ~~dG~~~----~~~~~~~~~~P~giav-~-~~~ly~td~~--~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 231 NLDGSHR----KAVISQGLPHPFAITV-F-EDSLYWTDWH--TKSINSANKFTGKN 278 (349)
T ss_dssp ETTSCSC----EEEECSSCSSEEEEEE-E-TTEEEEEETT--TTEEEEEETTTCCS
T ss_pred eCCCCce----EEEEeCCCCCceEEEE-E-CCEEEEecCC--CCeEEEEEccCCCc
Confidence 8754221 1222222223466777 2 3345544432 57787777544443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.019 Score=58.21 Aligned_cols=235 Identities=8% Similarity=-0.077 Sum_probs=123.9
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
.+|.+..++ .+|+.+....|+..+.. +....... ....+..++|++.+..|....... +.|..+++..
T Consensus 36 ~~C~~~~~~-~~ll~~~~~~I~~i~~~-g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~---------~~I~r~~~~g 104 (349)
T 3v64_C 36 RSCKALGPE-PVLLFANRIDIRQVLPH-RSEYTLLLNNLENAIALDFHHRRELVFWSDVTL---------DRILRANLNG 104 (349)
T ss_dssp SCEEESSSC-CEEEEECBSCEEEECTT-SCCEEEEECSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTS
T ss_pred CcccccccC-ceeEeecccceEEEeCC-CCeeEEeecCCCceEEEEEeccccEEEEEeccC---------CceEEEecCC
Confidence 456666664 45666666678877777 33322222 234588999998777776654331 6888999765
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
+.....+...... +. .+++.+ .+..|... . .+.|.+.++..................++++|.+
T Consensus 105 ~~~~~~~~~~~~~--------p~-----glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~ 170 (349)
T 3v64_C 105 SNVEEVVSTGLES--------PG-----GLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 170 (349)
T ss_dssp CSCEEEECSSCSC--------CC-----EEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred CCceEEEeCCCCC--------cc-----EEEEec-CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence 5432222211111 11 366665 55544433 3 7889999887432111111223456889999977
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
..|.+. ......+|+.++.............-.....+++++++..|+++..... .|+.+...+.
T Consensus 171 g~ly~t-----d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~----------~I~~~~~dG~ 235 (349)
T 3v64_C 171 GTIYWT-----DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH----------VIERANLDGS 235 (349)
T ss_dssp TEEEEE-----ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSC
T ss_pred CeEEEe-----ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCC----------EEEEEeCCCC
Confidence 766542 1222467888876543211110001112345678988888877654432 4455444332
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
....+ +.........+++ . +..+..+.... ..|..++.
T Consensus 236 ~~~~~-~~~~~~~P~giav-~-~~~ly~td~~~--~~V~~~~~ 273 (349)
T 3v64_C 236 HRKAV-ISQGLPHPFAITV-F-EDSLYWTDWHT--KSINSANK 273 (349)
T ss_dssp SCEEE-ECSSCSSEEEEEE-E-TTEEEEEETTT--TEEEEEET
T ss_pred ceEEE-EeCCCCCceEEEE-E-CCEEEEecCCC--CeEEEEEc
Confidence 22222 2122344566676 2 33454444322 15666653
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.038 Score=60.67 Aligned_cols=369 Identities=8% Similarity=-0.018 Sum_probs=182.9
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcc-cccCCCcccceEEEcCCCcEEEEEecC-c--eEEeecccCcceee-
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEP-VYKRSYWTESFVQWSPLGTYLATVHRQ-G--AAVWGGANTFNRLM- 249 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~v~~v~~Spdg~~lat~~~~-~--i~iw~~~~~~~~~~- 249 (712)
...|+.++..|++-...+.+...+.. +.... .+......-..|++.|.+.+|..+... . |...+++++.....
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~d--G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLD--GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECC--CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 34455566677776666666666552 22222 222333456789999976566555522 2 54556653332222
Q ss_pred eecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 250 RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 250 ~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
.-.......|+++++++.|..+... .+.|...++. |...+.+...... .+. .+++..
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~---------~~~I~~~~~d-G~~~~~~~~~~~~-------~P~-----gi~~~~- 223 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAK---------LNFIHKSNLD-GTNRQAVVKGSLP-------HPF-----ALTLFE- 223 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETT---------TCCEEEESSS-CCEEC----------------CC-----CEEESS-
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCC---------CCeEEEecCC-CCccEEEEeCCCC-------Cce-----EEEEeC-
Confidence 1123347899999988877776544 1578888874 4433333211000 011 355555
Q ss_pred CCCEEEEec--CCeEEEEEcCCceeccccccccc-------------------------CeeeEEE-CCCCCeEEEEeec
Q 005140 330 KDKYFAKLG--KNMISVYETESFTLIDKKSLKVE-------------------------NVMDFSW-SPTDPIISLFVPE 381 (712)
Q Consensus 330 dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~-------------------------~v~~~~~-sp~~~~la~~~~~ 381 (712)
+ .|.... .+.|...+..+++.......... +...+++ +|......+.++.
T Consensus 224 ~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~ 301 (619)
T 3s94_A 224 D--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPT 301 (619)
T ss_dssp S--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCT
T ss_pred C--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCc
Confidence 4 444443 77888888766543211100000 0111111 1111001111110
Q ss_pred CC--CCC-------CCe--------EEEEEecCCcc--ceeeeeee-eecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 382 LG--GGN-------QPA--------RVSLVQIPSKE--ELRQKNLF-SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 382 ~~--~~~-------~~~--------~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.- ..+ ... .|..+++.... .+. ..+. -.....+.|.+.+..|++......
T Consensus 302 g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~-~~~~~l~~~~~ld~d~~~~~ly~sD~~~~--------- 371 (619)
T 3s94_A 302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIV-LQLEDIRHAIAIDYDPVEGYIYWTDDEVR--------- 371 (619)
T ss_dssp TCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEE-CCCSCCSSEEEEEEETTTTEEEEEETTTT---------
T ss_pred hheecccCcccCCCCceEEEEEcccceEEEecCCCccceeE-EeccccCccEEEEEEcCCCeEEEEeCCCC---------
Confidence 00 000 000 11122221111 000 0000 112344567776666666544322
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
.|+++...+.....+.. ..-.....+++.+.+..|+.+.... ..|.+.+++.... ..+..-.-.....+++.
T Consensus 372 -~I~r~~~~g~~~~~v~~-~~~~~p~GlAvD~~~~~lY~tD~~~--~~I~v~~~~G~~~----~~l~~~~l~~P~~iavd 443 (619)
T 3s94_A 372 -AIRRSFIDGSGSQFVVT-AQIAHPDGIAVDWVARNLYWTDTGT--DRIEVTRLNGTMR----KILISEDLEEPRAIVLD 443 (619)
T ss_dssp -EEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTT--TEEEEEETTSCSC----EEEECTTCCSEEEEEEE
T ss_pred -eEEEEEcCCCccEEEEE-CCCCCcCceEEecccCcEEEEeCCC--CcEEEEeCCCCeE----EEEEECCCCCeeeEEEE
Confidence 46666654433322221 2234667889988777776665432 2888888754321 12221122356889999
Q ss_pred cCCCeEEEEeccCCCceEEEEECCcce--eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~~~~--~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
|...+|+.+..+. .+.|.-.+++... .+....-...+.+++++++..|..+... .+.|...+++|..
T Consensus 444 p~~G~ly~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~----~~~I~~~~~dG~~ 512 (619)
T 3s94_A 444 PMVGYMYWTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK----TDKIEVMNTDGTG 512 (619)
T ss_dssp TTTTEEEEEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT----TTEEEEEESSSCC
T ss_pred cCCCcEEEecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECC----CCEEEEEecCCCc
Confidence 9766666665433 4678777777432 2222334567899999988888777662 4567777777653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0039 Score=59.57 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=123.5
Q ss_pred CeeEEEecCCCCEEEE-EcCCCCCCCcCCCccEEEEEEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 255 QVKLIDFSPGEKYLVT-YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t-~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
.+..++|+|++..|++ ...+ +.|...|.. |+.++.+... .+.- .+++.+ ++
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~----------~~I~~ld~~-g~v~~~i~l~g~~D~E--------------GIa~~~-~g 81 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP----------AAIVEMTTN-GDLIRTIPLDFVKDLE--------------TIEYIG-DN 81 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT----------EEEEEEETT-CCEEEEEECSSCSSEE--------------EEEECS-TT
T ss_pred CcceeEEeCCCCEEEEEECCC----------CeEEEEeCC-CCEEEEEecCCCCChH--------------HeEEeC-CC
Confidence 5899999998776665 4444 789999986 8888887432 2222 578888 88
Q ss_pred CEEEEec-CCeEEEEEcCCcee---ccccc------ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC-Ccc
Q 005140 332 KYFAKLG-KNMISVYETESFTL---IDKKS------LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP-SKE 400 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~-~~~ 400 (712)
.++++.. ++.+.++++..... +.... ....+...++|+|.++.|.+ +....+..|+.++.. ...
T Consensus 82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-----a~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-----FKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-----EEESSSEEEEEEESTTCSS
T ss_pred EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-----EECcCCceEEEEcccccCC
Confidence 8777654 88899998764432 11111 12234789999999987776 223345678888721 111
Q ss_pred ceee-------eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-------CCce
Q 005140 401 ELRQ-------KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-------NDKI 466 (712)
Q Consensus 401 ~~~~-------~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-------~~~v 466 (712)
.+.. ...+......++++|....+++.++... .|..++..+.....+.+... -...
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~----------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qp 226 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR----------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQA 226 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT----------EEEEECTTCCEEEEEECSTTGGGCSSCCCSE
T ss_pred ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCC----------eEEEEcCCCCEEEEEEcCCccCCcccccCCC
Confidence 1111 0111123345678888888888777655 67777777777777777421 1366
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
..+++.|+|+.+++ +... .++.|.
T Consensus 227 EGia~d~~G~lyIv-sE~n---~~y~f~ 250 (255)
T 3qqz_A 227 EGVAMDASGNIYIV-SEPN---RFYRFT 250 (255)
T ss_dssp EEEEECTTCCEEEE-ETTT---EEEEEE
T ss_pred CeeEECCCCCEEEE-cCCc---eEEEEE
Confidence 88999999984444 5543 444443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0052 Score=67.01 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=44.7
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecccc-c--eeeEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHF-M--ATDVEWD 564 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~-~--v~~~~~s 564 (712)
.|..||+.+++. +-++. ...+....+...+..+++++. +|.|+.||..+++++.+.... . ..-+.+.
T Consensus 445 ~l~a~D~~tG~~------~W~~~~~~~~~~~~~~t~gg~v~~g~~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~ 515 (571)
T 2ad6_A 445 QIRAFDLTTGKA------KWTKWEKFAAWGGTLYTKGGLVWYATL---DGYLKALDNKDGKELWNFKMPSGGIGSPMTYS 515 (571)
T ss_dssp EEEEECTTTCCE------EEEEEESSCCCSBCEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCCE------EEEecCCCCccceeEEECCCEEEEEcC---CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEE
Confidence 677777766542 22222 222223233345667777776 999999999999988653321 1 1234456
Q ss_pred CCCCEEEEEE
Q 005140 565 PTGRYVATAV 574 (712)
Q Consensus 565 pdg~~l~t~s 574 (712)
.+|+.++...
T Consensus 516 ~~G~~yv~~~ 525 (571)
T 2ad6_A 516 FKGKQYIGSM 525 (571)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 7777444433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.011 Score=59.19 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=127.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcc------------cccCCCCCcCCCCcC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE------------FAVGGTGGVAGVSWP 322 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 322 (712)
...+++|+++|+++.++..+ +.|..|+..++.. ..+...... ........+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~----------~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~----- 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQD----------GRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTY----- 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTT----------SEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-----
T ss_pred CceEEEEcCCCCEEEEEcCC----------CeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCc-----
Confidence 46789999999977777777 7899998765543 323211000 0000000111
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCcee--ccccc--ccccCeeeEEECC-CCCeEEEEeecC-C---------CCCC
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTL--IDKKS--LKVENVMDFSWSP-TDPIISLFVPEL-G---------GGNQ 387 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~--~~~~~--~~~~~v~~~~~sp-~~~~la~~~~~~-~---------~~~~ 387 (712)
.+++.+.++.++++...+.|..++..++.. +.... ........+++.| +|++.++-.... . ....
T Consensus 84 gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred eEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence 467775134444443455688888775532 11110 1123468899999 887665410000 0 0123
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC-cceeEE-EecCCCCc
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVL-ELDNKNDK 465 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~-~l~~h~~~ 465 (712)
...|+.++....+...... .-.....++|+++|++|+++..... .+..|++.... .....+ .+ .+
T Consensus 164 ~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~--------~I~~~~~~~~~~~~~~~~~~~---~g- 230 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSH--------QIVKYWLEGPKKGTAEVLVKI---PN- 230 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGT--------EEEEEESSSTTTTCEEEEEEC---SS-
T ss_pred CceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCC--------eEEEEECCCCcCCccceEEeC---CC-
Confidence 4678888875443211111 1122334689999998877654322 13444433211 111111 22 23
Q ss_pred eEEEEEeeCCCEEEEEEcC-------CCCCeEEEEEeecccccCceeEEEEe--CC----CceeEEEEccCCCeEEEEec
Q 005140 466 IIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTL--KG----KQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~--~~----~~v~~l~~spdg~~l~~~~~ 532 (712)
...+++.++|+.+++.... +....|..++.. +. .+..+ +. ..+..+++ .+|+.+++...
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~------~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~ 302 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN------ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF 302 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC------EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC------EEEEEECCCCCccccceEEEE-eCCEEEEeecC
Confidence 7789999999876665441 000156666653 21 22222 21 23555655 45544444333
Q ss_pred cCCCceEEEEECC
Q 005140 533 KGFNGQLEFYNVD 545 (712)
Q Consensus 533 ~~~dg~v~iwd~~ 545 (712)
++.|..+++.
T Consensus 303 ---~~~i~~~~~~ 312 (322)
T 2fp8_A 303 ---HGSVGILVYD 312 (322)
T ss_dssp ---CSEEEEEEC-
T ss_pred ---CCceEEEecc
Confidence 6788888876
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.002 Score=71.87 Aligned_cols=278 Identities=12% Similarity=0.045 Sum_probs=142.7
Q ss_pred eEEEcC-CCcEEEEEecC------------ceEEeecccCcc--eeeeecC--CC-eeEEEecCCCCEEEEEcCCCCCCC
Q 005140 218 FVQWSP-LGTYLATVHRQ------------GAAVWGGANTFN--RLMRYAH--PQ-VKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 218 ~v~~Sp-dg~~lat~~~~------------~i~iw~~~~~~~--~~~~~~~--~~-v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+++.| +|++++.|+.+ .+.+||.. +.. .+..+.. .. ..++++.++|+.+++|+.+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~---- 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---- 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST----
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC-CCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC----
Confidence 567777 89999988632 15588876 333 3333322 22 44678889999999998651
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--C-----CeEEEEEcCCcee
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--K-----NMISVYETESFTL 352 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d-----~~i~iwd~~~~~~ 352 (712)
..+.+||..+++....-..+.... .......+ +|++++.++ + ..+.+||..+...
T Consensus 265 -----~~v~~yd~~t~~W~~~~~~~~~R~------------~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 265 -----KKTSLYDSSSDSWIPGPDMQVARG------------YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp -----TCEEEEEGGGTEEEECCCCSSCCS------------SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred -----CceEEecCcCCceeECCCCCcccc------------ccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 469999998776433221111111 12456677 889888887 3 5689999876543
Q ss_pred ccc-----ccccccCeeeEEECCCCCeEEEEeecCCCCCC-------CeEEEEEecCCccceeeeeeeee---------c
Q 005140 353 IDK-----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQ-------PARVSLVQIPSKEELRQKNLFSV---------S 411 (712)
Q Consensus 353 ~~~-----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~---------~ 411 (712)
... ....... ....+..++..+++ ++.++ ...+..|+............... .
T Consensus 327 ~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~-----Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 327 TSLPNAKVNPMLTAD-KQGLYRSDNHAWLF-----GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp EEETTSCSGGGCCCC-TTGGGTTTCSCCEE-----ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred eeCCCcccccccccc-ccceeecCCceEEE-----ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence 211 0011110 11223345555554 33332 23566777665442221111111 1
Q ss_pred ceeEEEC-cCCCEEEEEEcccccccccccc---cEEEEEEecCCcceeEE---EecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 412 DCKMYWQ-SSGDYLAVKVDRYTKTKKSTYT---GFELFRIKERDIPIEVL---ELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 412 ~~~~~~s-~~g~~l~~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~---~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
...+.+. .+++.++++..+... ...... .+.+|+.... .-..+ .+ .....-.+++..|+|+.+++++.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~-~~~~~~~~~~v~~yd~~~~--~W~~~~~~~m-p~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQ-DSDATTNAHIITLGEPGTS--PNTVFASNGL-YFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSS-SSBCCCCEEEEECCSTTSC--CEEEECTTCC-SSCCBSCEEEECTTSCEEEECCBS
T ss_pred CceEeccCCCCeEEEEeCCCCCC-CCCcCCcceEEEcCCCCCC--CeeEEccCCC-CCCcccCCeEECCCCCEEEECCcc
Confidence 2222333 355566665432110 000011 1223322111 11111 11 112223455677899999988754
Q ss_pred C--------CCCeEEEEEeecccccCceeEEEEeCCCc--eeEEEEccCCCeEEEEec
Q 005140 485 S--------PRPDISFYSMRTAQHAGRVSKLTTLKGKQ--ANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 485 ~--------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~--v~~l~~spdg~~l~~~~~ 532 (712)
. ....+.+||..+.. +..+..+.... ..+..+.|+|+.+++|+.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCCCc----eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 1 12478999986543 33333232221 234556799999999874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.014 Score=55.63 Aligned_cols=193 Identities=9% Similarity=0.155 Sum_probs=116.6
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.++|.| +++.|.+.. ++.|...|.. ++.+....+. ......+++.+++.++++ ..+..+++++++...
T Consensus 31 Gla~~~-~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs-------~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 31 SLTWSA-QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS-------DERDYAIYVISLTPN 101 (255)
T ss_dssp EEEEET-TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE-------ETTTTEEEEEEECTT
T ss_pred eeEEeC-CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE-------ECCCCcEEEEEcCCC
Confidence 589999 877666554 7788888887 6666544322 235778899988876555 333456777776554
Q ss_pred cce---eeeee------eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec--CCcceeEEEe-----cCCC
Q 005140 400 EEL---RQKNL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RDIPIEVLEL-----DNKN 463 (712)
Q Consensus 400 ~~~---~~~~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~l-----~~h~ 463 (712)
..+ ....+ .+...-.++|+|.+..|.++..+.. ..+|.++. .......... ..+.
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p---------~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP---------IEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS---------EEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC---------ceEEEEcccccCCceeeecchhhcccccc
Confidence 321 11111 1122246789999988888776654 46676652 1111111110 0123
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC---------ceeEEEEccCCCeEEEEeccC
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---------QANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---------~v~~l~~spdg~~l~~~~~~~ 534 (712)
..+.+++++|....|.+.+..+. .|..+|.... ......+..+ +...++|.|+|+..+ .+.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~--~L~~~d~~g~-----~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE-- 242 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESR--ALQEVTLVGE-----VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSE-- 242 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTT--EEEEECTTCC-----EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EET--
T ss_pred CCceeEEEcCCCCeEEEEECCCC--eEEEEcCCCC-----EEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcC--
Confidence 46789999998777777777552 7888886432 2234444421 457899999998544 455
Q ss_pred CCceEEEEEC
Q 005140 535 FNGQLEFYNV 544 (712)
Q Consensus 535 ~dg~v~iwd~ 544 (712)
.+.++.|..
T Consensus 243 -~n~~y~f~~ 251 (255)
T 3qqz_A 243 -PNRFYRFTP 251 (255)
T ss_dssp -TTEEEEEEC
T ss_pred -CceEEEEEe
Confidence 456666644
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.022 Score=56.77 Aligned_cols=224 Identities=7% Similarity=-0.082 Sum_probs=120.4
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCc---eeccc-cccc
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESF---TLIDK-KSLK 359 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~---~~~~~-~~~~ 359 (712)
.|+..|+.++.....+....... .+.|.+ .+..|..+. .+.|..+++.+. ..... ....
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~p~--------------g~~~d~-~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRNVV--------------ALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSSEE--------------EEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCCcceEehhcCCCceE--------------EEEEEe-CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence 48888987766544443333333 588998 776665554 789999998751 11111 1112
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
......+++.+.+..|.+. .....+|..++.............-.....++..|.+.+|++......
T Consensus 76 ~~~p~glavd~~~~~ly~~------d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~------- 142 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWT------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------- 142 (316)
T ss_dssp CSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-------
T ss_pred CCCcCEEEEeecCCeEEEE------ECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC-------
Confidence 2346788888765555431 223346666766543211111100112234567887777766543211
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANA 517 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~ 517 (712)
-.|+.+...+.....+ ....-.....++|+|++..|+.+.... ..|..++++... ...+.... ......
T Consensus 143 --~~I~~~~~dG~~~~~~-~~~~~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~dg~~----~~~~~~~~~~~~~P~g 213 (316)
T 1ijq_A 143 --AKIKKGGLNGVDIYSL-VTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGN----RKTILEDEKRLAHPFS 213 (316)
T ss_dssp --CEEEEEETTSCCEEEE-ECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCS----CEEEEECTTTTSSEEE
T ss_pred --CeEEEEcCCCCCeEEE-EECCCCCceEEEEeccCCEEEEEECCC--CeEEEEecCCCc----eEEEeecCCccCCcEE
Confidence 2466655444332222 112234678899999988888876543 289999986422 12333321 123456
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
+++. +..|+.+..+ .+.|..++..+++.+
T Consensus 214 iav~--~~~ly~~d~~--~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 214 LAVF--EDKVFWTDII--NEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEE--TTEEEEEETT--TTEEEEEETTTCCCC
T ss_pred EEEE--CCEEEEEECC--CCeEEEEeCCCCcce
Confidence 6774 3455554432 678888887655543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0043 Score=69.19 Aligned_cols=302 Identities=10% Similarity=0.072 Sum_probs=152.4
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-cCCC-CCcCCCCcCeEEecCCCCCEEEEecCCeE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-VGGT-GGVAGVSWPVFRWGGGKDKYFAKLGKNMI 342 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~s~~dg~~la~~~d~~i 342 (712)
+..|++++.+ +.|..+|..+|+.+..+........ .... ..+.. .+... ++..++...++.|
T Consensus 66 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~v~v~~~dg~l 129 (668)
T 1kv9_A 66 DGVIYTSMSW----------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR----GVALW--GDKVYVGTLDGRL 129 (668)
T ss_dssp TTEEEEEEGG----------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC----CCEEE--BTEEEEECTTSEE
T ss_pred CCEEEEECCC----------CeEEEEECCCChhceEECCCCCccccccccccCCcc----ceEEE--CCEEEEEcCCCEE
Confidence 4556666667 7899999999999888765432110 0000 00000 12221 3444443349999
Q ss_pred EEEEcCCceeccccccccc-CeeeEEECC--CCCeEEEEeecCCCCC----CCeEEEEEecCCccceeeeeee-------
Q 005140 343 SVYETESFTLIDKKSLKVE-NVMDFSWSP--TDPIISLFVPELGGGN----QPARVSLVQIPSKEELRQKNLF------- 408 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~-~v~~~~~sp--~~~~la~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------- 408 (712)
..+|..+|+.+........ ....+.-+| .+..+++ +..+ ....|+-++..+.+.+-.....
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~v-----g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~ 204 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVII-----GNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALP 204 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEE-----CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEE-----eCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcc
Confidence 9999999998766543211 011111122 1233333 2221 2356666776665533222110
Q ss_pred ------------------------eecceeEEECcCCCEEEEEEccccc---------ccccccccEEEEEEecC-Ccce
Q 005140 409 ------------------------SVSDCKMYWQSSGDYLAVKVDRYTK---------TKKSTYTGFELFRIKER-DIPI 454 (712)
Q Consensus 409 ------------------------~~~~~~~~~s~~g~~l~~~~~~~~~---------~~~~~~~~~~l~~l~~~-~~~~ 454 (712)
...-..+.+.+.+..+++++.+... .+...|. ..|+-++.. +...
T Consensus 205 ~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~-~~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 205 YEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL-SSILAIRPDTGKLA 283 (668)
T ss_dssp CSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT-TEEEEECTTTCCEE
T ss_pred ccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee-eeEEEEcCCCCcee
Confidence 0000124567777788777655420 0000111 023333322 2222
Q ss_pred eEEEecCCC-------CceEEEEEeeCCC---EEEEEEcCCCCCeEEEEEeecccccCceeE-----EEEeC---CC---
Q 005140 455 EVLELDNKN-------DKIIAFAWEPKGH---RFAVIHGDSPRPDISFYSMRTAQHAGRVSK-----LTTLK---GK--- 513 (712)
Q Consensus 455 ~~~~l~~h~-------~~v~~~~~sp~g~---~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~-----~~~~~---~~--- 513 (712)
-......|. .+.....+..+|+ .+++++.++ .++++|..++........ ...+. +.
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~ 360 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNG---FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE 360 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE
T ss_pred eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCC---EEEEEECCCCCEeccccccccccccccccccCCccc
Confidence 222222222 2223333344675 566666777 888888877652100000 00000 00
Q ss_pred ---------------------ceeEEEEccCCCeEEEEec---------------------------------cCCCceE
Q 005140 514 ---------------------QANALFWSPSGRFIVLAGL---------------------------------KGFNGQL 539 (712)
Q Consensus 514 ---------------------~v~~l~~spdg~~l~~~~~---------------------------------~~~dg~v 539 (712)
.-..++++|+...+++... ...+|.|
T Consensus 361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l 440 (668)
T 1kv9_A 361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL 440 (668)
T ss_dssp CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence 0123688888776665211 0124889
Q ss_pred EEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee
Q 005140 540 EFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR 596 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~ 596 (712)
..||+.+++.+-+.. ........+...|..|++++. |+.++.||.. |+.+..
T Consensus 441 ~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~-----dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA-----AGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEE
T ss_pred EEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC-----cccchhhhhhcChhheE
Confidence 999999998876532 233344455667888888877 8999999875 555443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.039 Score=57.67 Aligned_cols=157 Identities=8% Similarity=0.024 Sum_probs=83.1
Q ss_pred eEEecCCC-CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-
Q 005140 323 VFRWGGGK-DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK- 399 (712)
Q Consensus 323 ~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~- 399 (712)
.++|+| . +..|..+. .+.|+.+++.++.+... .........++|+++++.|.+..... ......+..+.....
T Consensus 141 ~lavdp-~~~g~Lyv~d~~~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyvad~~~--~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 141 WLSFDP-KNHNHLYLVGEQHPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIITNDQN--NNDRPNNYILTRESGF 216 (430)
T ss_dssp EEEEET-TEEEEEEEEEBTEEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEEECCS--CTTSEEEEEEEGGGTS
T ss_pred EEEECC-CCCCeEEEEeCCCcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEEeCCC--CcccceEEEEeCCCce
Confidence 578886 4 33344444 58889999886554321 12334578999999999665521110 112223444433211
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceEEEEEeeCCCEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l 478 (712)
....... .......++++|++..|++...... .++.+...+..... ..+ +.......++|+|+|++|
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~----------~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAG----------QVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTT----------EEEEEETTTTEEEEEEEC-SSSSCCEEEEECTTSSEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCC----------EEEEEECCCCcEEEEEEc-CCCCcceeEEEcCCCCEE
Confidence 1111111 1112344567884444555443322 45665554333211 222 122456789999999977
Q ss_pred EEEEcCCCCCeEEEEEeec
Q 005140 479 AVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~ 497 (712)
+++.... ..|..++.+.
T Consensus 285 yv~d~~~--~~I~~~~~d~ 301 (430)
T 3tc9_A 285 YIVVVNQ--HYILRSDYDW 301 (430)
T ss_dssp EEEETTT--TEEEEEEEET
T ss_pred EEEECCC--CEEEEEeCCc
Confidence 7776543 2888888763
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.01 Score=64.69 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=34.4
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCC-EEEEEEc
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~-~l~t~s~ 575 (712)
.|..+++++. ||.|+.||..+++++-+... ....-+.|..+|+ ||++.+.
T Consensus 483 agg~vf~gt~---dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 483 AGDLVFYGTL---DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp TTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCEEEEECC---CCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 5667777776 99999999999998865322 1223356677887 4555444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.072 Score=58.43 Aligned_cols=399 Identities=10% Similarity=-0.009 Sum_probs=190.8
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC-c-eEEeecccCcceeee-e
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ-G-AAVWGGANTFNRLMR-Y 251 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~-~-i~iw~~~~~~~~~~~-~ 251 (712)
.-+++.....|++-...+.+..++..........+.........+++.+.+..|+.+... + |.+.+..++...+.. -
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~ 124 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ 124 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeC
Confidence 344555555666665555555555522211222333333456789999976666666543 4 778888844333222 1
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC-eEEecCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGK 330 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~d 330 (712)
.......|++.|.+.+|....... .+.|...++ .|.....+.... +.|| .+++++ +
T Consensus 125 ~l~~P~~Iavdp~~g~ly~tD~g~--------~~~I~r~~~-dG~~~~~l~~~~-------------~~~P~Glald~-~ 181 (619)
T 3s94_A 125 ELDQPRAIALDPSSGFMYWTDWGE--------VPKIERAGM-DGSSRFIIINSE-------------IYWPNGLTLDY-E 181 (619)
T ss_dssp SCSCCCCEEEETTTTEEEEEECSS--------SCEEEEEET-TSCSCEEEECSS-------------CSSEEEEEEET-T
T ss_pred CCCCCceEEEecCCCeEEEeccCC--------CCEEEEEEC-CCCceEEEEeCC-------------CCCCcEEEEEc-c
Confidence 233478999999877666655320 146666665 444333332111 1122 578888 7
Q ss_pred CCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee---
Q 005140 331 DKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK--- 405 (712)
Q Consensus 331 g~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--- 405 (712)
++.|..+. .+.|..+++..................+++..+ .|.. + .-....|+.++..+.+.....
T Consensus 182 ~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~-t-----d~~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYW-T-----DWSTHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEE-E-----CTTTCSEEEEESSSCCCCEECCSC
T ss_pred CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEE-e-----cCCCCEEEEEECCCCcccEEEecC
Confidence 77666665 778888888743322111111222345666544 3322 1 223334555554333211100
Q ss_pred -------eee-e--------------ecceeEE-ECcC-CCEEEEEEcccccc--cccc---cccEEEE-------EEec
Q 005140 406 -------NLF-S--------------VSDCKMY-WQSS-GDYLAVKVDRYTKT--KKST---YTGFELF-------RIKE 449 (712)
Q Consensus 406 -------~~~-~--------------~~~~~~~-~s~~-g~~l~~~~~~~~~~--~~~~---~~~~~l~-------~l~~ 449 (712)
.++ . ..+..+. .+|. +.+-+.+....... +... ...+.++ .+..
T Consensus 254 ~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l 333 (619)
T 3s94_A 254 IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333 (619)
T ss_dssp CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEES
T ss_pred CCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEec
Confidence 000 0 0000011 1221 12222221111000 0000 0111111 1111
Q ss_pred CCcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEE
Q 005140 450 RDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIV 528 (712)
Q Consensus 450 ~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 528 (712)
.......+.++ ..-..+.+++|.+.+..|+.+.... ..|+.++++.... ..+....-.....+++.+.++.|+
T Consensus 334 ~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~--~~I~r~~~~g~~~----~~v~~~~~~~p~GlAvD~~~~~lY 407 (619)
T 3s94_A 334 DTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEV--RAIRRSFIDGSGS----QFVVTAQIAHPDGIAVDWVARNLY 407 (619)
T ss_dssp SSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSC----EEEECSSCSCCCEEEEETTTTEEE
T ss_pred CCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCC--CeEEEEEcCCCcc----EEEEECCCCCcCceEEecccCcEE
Confidence 11100111111 1123567899998777777766532 2777777754321 122222223567899998777777
Q ss_pred EEeccCCCceEEEEECCcce--eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee---ccccee
Q 005140 529 LAGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFF 603 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~--~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---~~~~i~ 603 (712)
.+..+ .+.|.+.++++.. .+....-....+++++|...+|..+.... ...|...+++|...... ......
T Consensus 408 ~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~---~~~I~r~~~dG~~~~~l~~~~l~~P~ 482 (619)
T 3s94_A 408 WTDTG--TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE---IPKIERAALDGSDRVVLVNTSLGWPN 482 (619)
T ss_dssp EEETT--TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred EEeCC--CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC---CCEEEEEccCCCccEEEEeCCCCCCe
Confidence 66532 6889999988542 22223335678999999755555554310 23455555666533222 234566
Q ss_pred eeEEecCCCCCC
Q 005140 604 QFLWRPRPPSFL 615 (712)
Q Consensus 604 ~~~w~p~~~~l~ 615 (712)
.++..+....|+
T Consensus 483 GlalD~~~~~LY 494 (619)
T 3s94_A 483 GLALDYDEGKIY 494 (619)
T ss_dssp EEEEETTTTEEE
T ss_pred eeEEcccCCEEE
Confidence 777777554443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0088 Score=59.95 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=126.6
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-------------------cccccCeeeEEECC-CCCeEEEEeec
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------------------SLKVENVMDFSWSP-TDPIISLFVPE 381 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-------------------~~~~~~v~~~~~sp-~~~~la~~~~~ 381 (712)
.++|.+ +++++.+.. ++.|..|+..++....-. ......+..+++.+ ++++++.
T Consensus 23 ~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~---- 97 (322)
T 2fp8_A 23 SFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV---- 97 (322)
T ss_dssp CEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE----
T ss_pred EEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE----
Confidence 478999 998555555 899999987754332100 00123478899998 6655443
Q ss_pred CCCCCCCeEEEEEecCCcc--ceeeee--eeeecceeEEECc-CCCEEEEEEccc-cccc-----ccccccEEEEEEecC
Q 005140 382 LGGGNQPARVSLVQIPSKE--ELRQKN--LFSVSDCKMYWQS-SGDYLAVKVDRY-TKTK-----KSTYTGFELFRIKER 450 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~--~~~~~~--~~~~~~~~~~~s~-~g~~l~~~~~~~-~~~~-----~~~~~~~~l~~l~~~ 450 (712)
... ..++.++..... .+.... ........+.+.+ +|...++..... .... ......-.++.+...
T Consensus 98 -d~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 98 -DCY---YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp -ETT---TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred -ECC---CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 112 236667654332 111100 0001123467788 886544432210 0000 000011346666543
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVL 529 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~ 529 (712)
......+. ..-.....++|+|+|++|+++.. .+ .|..|++..... .....+..+.+ ...+++.++|++.++
T Consensus 174 ~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~---~I~~~~~~~~~~-~~~~~~~~~~g--P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 174 TKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSH---QIVKYWLEGPKK-GTAEVLVKIPN--PGNIKRNADGHFWVS 245 (322)
T ss_dssp TTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGT---EEEEEESSSTTT-TCEEEEEECSS--EEEEEECTTSCEEEE
T ss_pred CCEEEEec--cCCccCcceEECCCCCEEEEEeCCCC---eEEEEECCCCcC-CccceEEeCCC--CCCeEECCCCCEEEE
Confidence 32222111 01134557899999998877755 34 899999864221 12223333433 678999999986655
Q ss_pred Eecc-------CCCceEEEEECCcceeeeecc------ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 530 AGLK-------GFNGQLEFYNVDELETMATAE------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 530 ~~~~-------~~dg~v~iwd~~~~~~~~~~~------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.... ...+.|..+|.. ++.+.... ...++.+++ .+|+..++... .+.|..+++.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~-----~~~i~~~~~~ 312 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF-----HGSVGILVYD 312 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS-----CSEEEEEEC-
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC-----CCceEEEecc
Confidence 4320 003568888875 55444321 134556666 35544444434 5778777765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.037 Score=55.14 Aligned_cols=227 Identities=8% Similarity=-0.070 Sum_probs=119.3
Q ss_pred EEEEEecCceEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC---Cceeee-c
Q 005140 227 YLATVHRQGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT---GKVMRD-F 301 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~---g~~~~~-~ 301 (712)
+|+++....|+..++. +........ ...+..++|++.+..|..+... .+.|..+++.. +..... +
T Consensus 3 ~ll~~~~~~I~~i~~~-~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp EEEEECBSSEEEEETT-SCCCEEEECSCSSEEEEEEETTTTEEEEEETT---------TTEEEEEEC--------CEEEE
T ss_pred EEEEECCCeEEEEECC-CcceEehhcCCCceEEEEEEeCCCEEEEEECC---------CCcEEEEECCCCCCCcccEEEE
Confidence 5777777788888887 444333332 3458899999987766655443 16899998754 122221 2
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..... .+. .+++.+ .+..|..+ . .+.|.++++..................+++.|.+..|.+
T Consensus 73 ~~~~~--------~p~-----glavd~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~-- 136 (316)
T 1ijq_A 73 SRDIQ--------APD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW-- 136 (316)
T ss_dssp CSSCS--------CCC-----EEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE--
T ss_pred eCCCC--------CcC-----EEEEee-cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE--
Confidence 11100 011 466665 44444333 3 889999998743221111112345788999997776654
Q ss_pred ecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE
Q 005140 380 PELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL 457 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 457 (712)
+..+...+|+.++..... .+....+ .....++|++++..|+++..... .|+.+...+.....+
T Consensus 137 ---~d~~~~~~I~~~~~dG~~~~~~~~~~~--~~P~gla~d~~~~~lY~~D~~~~----------~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 137 ---TDWGTPAKIKKGGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTI 201 (316)
T ss_dssp ---EECSSSCEEEEEETTSCCEEEEECSSC--SCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEE
T ss_pred ---EccCCCCeEEEEcCCCCCeEEEEECCC--CCceEEEEeccCCEEEEEECCCC----------eEEEEecCCCceEEE
Confidence 112223678877764322 1111111 12345678988888877654432 344444433322222
Q ss_pred E-ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 458 E-LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 458 ~-l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
. ....-.....+++. +..++.+.... ..|..++..++
T Consensus 202 ~~~~~~~~~P~giav~--~~~ly~~d~~~--~~V~~~~~~~g 239 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF--EDKVFWTDIIN--EAIFSANRLTG 239 (316)
T ss_dssp EECTTTTSSEEEEEEE--TTEEEEEETTT--TEEEEEETTTC
T ss_pred eecCCccCCcEEEEEE--CCEEEEEECCC--CeEEEEeCCCC
Confidence 1 11112345667773 34555554432 26777776443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0071 Score=63.38 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=82.1
Q ss_pred CeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
....|+|+| ++..|..+... +.|+.+|+.++............. .++|++ +|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~----------~~I~~id~~~~~v~~~~~~~~~P~--------------~ia~d~-~G~~ 192 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ----------HPTRLIDFEKEYVSTVYSGLSKVR--------------TICWTH-EADS 192 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT----------EEEEEEETTTTEEEEEECCCSCEE--------------EEEECT-TSSE
T ss_pred CCCEEEECCCCCCeEEEEeCC----------CcEEEEECCCCEEEEEecCCCCcc--------------eEEEeC-CCCE
Confidence 467899999 56677777665 579999986655433333222222 589999 9995
Q ss_pred EEEec--CC----eEEEEEcCCceecccc-cccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 334 FAKLG--KN----MISVYETESFTLIDKK-SLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 334 la~~~--d~----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
|..+. ++ .+.+++ ..+...... .........++++| ++.++++ .....+|+.++..........
T Consensus 193 lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~-------d~~~~~V~~~~~~~~~~~~~~ 264 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILT-RESGFKVITELTKGQNCNGAETHPINGELYFN-------SWNAGQVFRYDFTTQETTPLF 264 (430)
T ss_dssp EEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEECSSCCCEEECTTTCCEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCcccceEEEEe-CCCceeeeeeeccCCCceEEEEeCCCCEEEEE-------ECCCCEEEEEECCCCcEEEEE
Confidence 55444 22 233333 333322111 11234567889999 5655544 334457888887654321111
Q ss_pred eee-eecceeEEECcCCCEEEEEEcc
Q 005140 406 NLF-SVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 406 ~~~-~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
... ......++|+|+|++|++....
T Consensus 265 ~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 265 TIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp ECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred EcCCCCcceeEEEcCCCCEEEEEECC
Confidence 111 1224457899999977776544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.012 Score=61.72 Aligned_cols=143 Identities=10% Similarity=0.066 Sum_probs=79.0
Q ss_pred CeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 255 QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 255 ~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
....|+|+|+ +..|..+... +.|+.+|..++............. .++|++ +|+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~----------~~I~~id~~~g~v~~~~~~~~~P~--------------giavd~-dG~ 194 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR----------DAFRHVDFVNQYVDIKTTNIGQCA--------------DVNFTL-NGD 194 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT----------SCEEEEETTTTEEEEECCCCSCEE--------------EEEECT-TCC
T ss_pred CCceEEEccccCCCEEEEEeCC----------CCEEEEECCCCEEEEeecCCCCcc--------------EEEECC-CCC
Confidence 3678999995 4556665554 469999987776554443222222 689999 999
Q ss_pred EEEEecCC----e-EEEEEcCCceecc-cccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 333 YFAKLGKN----M-ISVYETESFTLID-KKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 333 ~la~~~d~----~-i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++++...+ . +..++.. +.... ...........++++| +|.+.++ .....+|+.++..........
T Consensus 195 lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~~~~~P~giavd~~~G~lyv~-------d~~~~~V~~~d~~~g~~~~~~ 266 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRA-SGFTERLSLCNARGAKTCAVHPQNGKIYYT-------RYHHAMISSYDPATGTLTEEE 266 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGG-GTTCCEEEEEECSSBCCCEECTTTCCEEEC-------BTTCSEEEEECTTTCCEEEEE
T ss_pred EEEEcCCCCcccceEEEEECC-CCeeccccccccCCCCEEEEeCCCCeEEEE-------ECCCCEEEEEECCCCeEEEEE
Confidence 55554421 2 3333322 11110 0111233467789999 5554443 334457888887644331111
Q ss_pred -ee-eeecceeEEECcCCCEEEEEEcc
Q 005140 406 -NL-FSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 406 -~~-~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.. .......++|+|+|++|++....
T Consensus 267 ~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 267 VMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp EECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred eccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 10 01112247899999977776554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.038 Score=57.74 Aligned_cols=240 Identities=7% Similarity=-0.041 Sum_probs=118.6
Q ss_pred eEEecCCC---CCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGK---DKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~d---g~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.++|+| + +.++++-..+.|+.++..++.+.... ........++++|+|+++++ .. .+......+..+.....
T Consensus 143 gvavd~-~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVa-d~--~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 143 RMMFDP-NSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVV-DD--QSSDTNTGIYLFTRASG 217 (433)
T ss_dssp EEEECT-TTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEE-EC--CSCTTSEEEEEECGGGT
T ss_pred eEEEcc-ccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEE-cC--CCCcccceEEEEECCCC
Confidence 588988 6 44433333588999998766654221 23445889999999994433 11 00111222333332211
Q ss_pred cc-eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEeeCCCE
Q 005140 400 EE-LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKGHR 477 (712)
Q Consensus 400 ~~-~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g~~ 477 (712)
.. ..... .-.....++++|++..|+++..... .++.+....... ..+...+.......++|+|+|++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~----------~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHA----------MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCS----------EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCC----------EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 10 00000 1112233567884444444332221 466665442222 11211111223346999999997
Q ss_pred EEEEEcCCCCCeEEEEEeecccccC-ceeEE-EEeC-------------CCceeEEEE---------ccCCCeEEEEecc
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAG-RVSKL-TTLK-------------GKQANALFW---------SPSGRFIVLAGLK 533 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~-~~~~~-~~~~-------------~~~v~~l~~---------spdg~~l~~~~~~ 533 (712)
|+++.... ..|..++++...... ....+ .... -.....+++ .++|.++++-..
T Consensus 287 LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~- 363 (433)
T 4hw6_A 287 AYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD- 363 (433)
T ss_dssp EEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-
T ss_pred EEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-
Confidence 77776543 278887765321100 00111 1100 012356888 666765555444
Q ss_pred CCCceEEEEECCcceeeeecc-------------------ccceeeEEEC-CCCCEEEEEEccceeccccEEEEEe
Q 005140 534 GFNGQLEFYNVDELETMATAE-------------------HFMATDVEWD-PTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 534 ~~dg~v~iwd~~~~~~~~~~~-------------------~~~v~~~~~s-pdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
++.|+.++.. +.+..... -.....++++ ++|. |+.+... .+.|+.+++
T Consensus 364 --n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~----n~rIr~i~~ 431 (433)
T 4hw6_A 364 --SHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCD----NHRVRKIAP 431 (433)
T ss_dssp --TTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGG----GTEEEEEEE
T ss_pred --CCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCC----CCEEEEEec
Confidence 6788888864 43322110 1235678999 4554 4444431 566666654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.69 E-value=0.052 Score=56.14 Aligned_cols=225 Identities=6% Similarity=-0.087 Sum_probs=119.7
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCce----eccccccc
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFT----LIDKKSLK 359 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~----~~~~~~~~ 359 (712)
.|+..++........+....... .++|.+ .+..|.... .+.|..+++.... ........
T Consensus 93 ~I~~i~l~~~~~~~~~~~~~~~~--------------~l~~d~-~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPNLRNVV--------------ALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEECTTSCSCEEEECSCSCEE--------------EEEEET-TTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEEccCCcceeEeccccCcce--------------EEeeee-ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 68888876554433333333333 689998 766666554 7889888876421 11111112
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
......+++.+.+..|.+. .....+|..++.............-.....++..|.+.+|+.......
T Consensus 158 ~~~p~glavD~~~~~lY~~------d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~------- 224 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWT------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------- 224 (400)
T ss_dssp CSCEEEEEEETTTTEEEEE------ETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS-------
T ss_pred CCCcccEEEEecCCceEEE------ECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC-------
Confidence 3456788888865555442 223346777776543321111101112334567887777766543211
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANA 517 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~ 517 (712)
-.|+.+...+.....+ +...-.....++++|++..|+.+.... ..|..++++.... ..+..... .....
T Consensus 225 --~~I~~~~~dG~~~~~~-~~~~l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~dG~~~----~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 225 --AKIKKGGLNGVDIYSL-VTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNR----KTILEDEKRLAHPFS 295 (400)
T ss_dssp --CCEEEEETTSCSCEEE-ECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCCC----EEEEECSSTTSSEEE
T ss_pred --CEEEEEeCCCCccEEE-EECCCCceEEEEEEeCCCEEEEEECCC--CEEEEEeCCCCcc----EEEEeCCCCCCCCEE
Confidence 1355555544332222 212235678899999988888886543 2788888854321 12322211 12345
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+++ ++..|+.+..+ .+.|..+|..+++.+.
T Consensus 296 l~v--~~~~lywtd~~--~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 296 LAV--FEDKVFWTDII--NEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEE--ETTEEEEEESS--SCSEEEEESSSCCCCE
T ss_pred EEE--eCCEEEEecCC--CCeEEEEEcCCCCceE
Confidence 555 45555555432 5778888866665443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.016 Score=57.21 Aligned_cols=226 Identities=8% Similarity=0.038 Sum_probs=124.2
Q ss_pred cCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCC-------CCCeEEEEEec
Q 005140 327 GGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG-------NQPARVSLVQI 396 (712)
Q Consensus 327 s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~-------~~~~~i~~~~~ 396 (712)
+. +|..|+... ++.|...+..... ..+ +... .+--++++|.+|.+.....+.. .....|+.+++
T Consensus 22 ~~-~g~~iy~~n~~d~~~ly~~~~dg~~-~~~--l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CE-SDGEVFFSNTNDNGRLYAMNIDGSN-IHK--LSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EE-ETTEEEEEEGGGTTEEEEEETTSCS-CEE--EEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EE-eCCEEEEEeCCCCceEEEEcCCCCC-CEE--ccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 44 667666664 4555555544222 111 1111 2335688999998743221000 01356777777
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEE--cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
...+...... .....|+++|++|+... .... ..||.+...+.....+. .+.. .+++|+
T Consensus 96 dg~~~~~l~~-----~~~~~~s~~g~~Iy~~~~~~~~~---------~~Iy~~~~dGs~~~~lt--~~~~----~~~~~~ 155 (302)
T 3s25_A 96 NGHGSTVLDP-----DPCIYASLIGNYIYYLHYDTQTA---------TSLYRIRIDGEEKKKIK--NHYL----FTCNTS 155 (302)
T ss_dssp TSCCCEEEEC-----SCEEEEEEETTEEEEEEESSSSC---------EEEEEEETTSCCCEEEE--SSCC----CCSEEE
T ss_pred CCCcceEeec-----CCccEEEEeCCEEEEEeecCCCC---------ceEEEEECCCCCeEEEe--CCCc----eEeeEE
Confidence 6554221111 11236788999999876 1222 57888887765543333 2222 457889
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE 554 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~ 554 (712)
|+.|+..+... +.|...++..+.. +.+ +. .... ..++|+|++|+...... ...|..-++++.......
T Consensus 156 g~~iy~t~~g~--~~Iy~~~l~g~~~----~~l--~~-~~~~-~~~~P~g~~iy~t~~~~-~~~I~~~~ldG~~~~~Lt- 223 (302)
T 3s25_A 156 DRYFYYNNPKN--GQLYRYDTASQSE----ALF--YD-CNCY-KPVVLDDTNVYYMDVNR-DNAIVHVNINNPNPVVLT- 223 (302)
T ss_dssp TTEEEEECTTT--CCEEEEETTTTEE----EEE--EC-SCEE-EEEEEETTEEEEEEGGG-TTEEEEECSSSCCCEECS-
T ss_pred CCEEEEEeCCC--ceEEEEECCCCCE----EEE--eC-CCcc-ceeeecCCEEEEEEcCC-CcEEEEEECCCCCeEEEe-
Confidence 99999887622 2677777654321 122 22 2223 34669999999887532 246777777754432222
Q ss_pred ccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 555 HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 555 ~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
...+ ..|+|+|++|..++... .+.|..-+++|....
T Consensus 224 ~~~~--~~~~~~g~~Iy~~~~~~---~~~i~~~~~DG~~r~ 259 (302)
T 3s25_A 224 EANI--EHYNVYGSLIFYQRGGD---NPALCVVKNDGTGFK 259 (302)
T ss_dssp CSCE--EEEEEETTEEEEEECSS---SCEEEEEETTSCCCE
T ss_pred CCCc--ceEEECCCEEEEEECCC---CcEEEEEECCCCccE
Confidence 1222 45889999998765410 245555566665433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.14 Score=56.30 Aligned_cols=399 Identities=11% Similarity=0.026 Sum_probs=194.1
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc--eEEeecccCcceee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLM 249 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~ 249 (712)
.....+|+.....|.+-...+.+.-++.. .......+.........+++.+.+..|..+.... |.+.+..++.....
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l 117 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence 33445566666666666666666555542 2222222332334566788987766666665433 77888874443332
Q ss_pred e-ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC-eEEec
Q 005140 250 R-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWG 327 (712)
Q Consensus 250 ~-~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 327 (712)
. -.......|++.|...+|....... .+.|...++. |.....+... +.|| .++++
T Consensus 118 ~~~~l~~P~~iavdp~~G~lY~tD~g~--------~~~I~r~~~d-G~~~~~l~~~--------------~~~P~GlalD 174 (628)
T 4a0p_A 118 VWKDLDSPRALALDPAEGFMYWTEWGG--------KPKIDRAAMD-GSERTTLVPN--------------VGRANGLTID 174 (628)
T ss_dssp ECSSCCCEEEEEEETTTTEEEEEECSS--------SCEEEEEETT-SCSCEEEECS--------------CSSEEEEEEE
T ss_pred EeCCCCCcccEEEccCCCeEEEeCCCC--------CCEEEEEeCC-CCceEEEECC--------------CCCcceEEEc
Confidence 2 2234588999999766666554320 1577778764 4333322211 1122 57888
Q ss_pred CCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc---e
Q 005140 328 GGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE---L 402 (712)
Q Consensus 328 ~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~---~ 402 (712)
+ +++.|..+. .+.|..+++..... ............+++.. + .|.+ + .-....|+.++..+.+. +
T Consensus 175 ~-~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~ly~-t-----D~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 175 Y-AKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YIYW-T-----DWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp T-TTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EEEE-E-----ETTTTEEEEEETTTCCSCEEE
T ss_pred c-ccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EEEE-e-----cCCCCEEEEEECCCCCceEEE
Confidence 8 877776665 78899999874322 11111222344555543 2 2322 1 12233455555332211 1
Q ss_pred ee-------eee-ee-----e--------cceeEEE-CcCCCEEEEEEccccc--cccc--ccccEEEE-------EEec
Q 005140 403 RQ-------KNL-FS-----V--------SDCKMYW-QSSGDYLAVKVDRYTK--TKKS--TYTGFELF-------RIKE 449 (712)
Q Consensus 403 ~~-------~~~-~~-----~--------~~~~~~~-s~~g~~l~~~~~~~~~--~~~~--~~~~~~l~-------~l~~ 449 (712)
.. ..+ +. . .+..+.. .|.|.+-+.+...... .+.. ......+| .+..
T Consensus 245 ~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l 324 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVI 324 (628)
T ss_dssp ECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECC
T ss_pred ecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEec
Confidence 00 000 00 0 0001111 1223333332111100 0000 00111222 2211
Q ss_pred CCcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-e----CCCceeEEEEccC
Q 005140 450 RDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-L----KGKQANALFWSPS 523 (712)
Q Consensus 450 ~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~----~~~~v~~l~~spd 523 (712)
.........++ ..-..+.+++|.+....|+.+.... ..|+.+++..... ...+.. . .......+++.+.
T Consensus 325 ~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~--~~I~r~~~~g~~~---~~v~~~~~~~~~~~~~p~glAvD~~ 399 (628)
T 4a0p_A 325 DEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ--NMIRKAQEDGSQG---FTVVVSSVPSQNLEIQPYDLSIDIY 399 (628)
T ss_dssp CTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSC---EEEEC--------CCCEEEEEEETT
T ss_pred ccccCceEEEEehhcCCceEEEEecCCCeEEEEecCc--ceEEEEEcCCCCc---eEEEEcccccccccCCcceEEeecc
Confidence 11100001121 1124577899999878877776532 2677776643221 112211 0 1225688999998
Q ss_pred CCeEEEEeccCCCceEEEEECCcce--eeeeccccceeeEEECCCCCEEEEEEccceeccc--cEEEEEecCceeeee--
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYVATAVTSVHEMEN--GFNIWSFNGKLLYRT-- 597 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~--~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~--~v~iw~~~g~~~~~~-- 597 (712)
++.|+.+..+ .+.|.+.++++.. .+.........++++.|...+|..+... .. .|...+++|......
T Consensus 400 ~~nLY~td~~--~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g----~~~~~I~r~~~dG~~~~~l~~ 473 (628)
T 4a0p_A 400 SRYIYWTCEA--TNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ----ERSPKIERAALDGTEREVLFF 473 (628)
T ss_dssp TTEEEEEETT--TTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEE----TTEEEEEEEETTSCSCEEEEC
T ss_pred CCeEEEEcCC--CCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecC----CCCCeEEEEeCCCCCcEEEEe
Confidence 8877766532 6789999987432 2222334568899999954444444331 22 344455666543322
Q ss_pred -cccceeeeEEecCCCCCC
Q 005140 598 -LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 598 -~~~~i~~~~w~p~~~~l~ 615 (712)
.......++..+....|+
T Consensus 474 ~~l~~P~gla~D~~~~~LY 492 (628)
T 4a0p_A 474 SGLSKPIALALDSRLGKLF 492 (628)
T ss_dssp SSCSCEEEEEEETTTTEEE
T ss_pred ccCCCccEEEEeCCCCEEE
Confidence 234566777777654443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.028 Score=55.40 Aligned_cols=246 Identities=11% Similarity=0.065 Sum_probs=136.4
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-- 338 (712)
|+++|.+|....... .+.|...+. +|...+.+.... +--+++ +|.+|+.+.
T Consensus 21 ~~~~g~~iy~~n~~d--------~~~ly~~~~-dg~~~~~l~~~~-----------------~~~i~~-~g~~Iyy~~~~ 73 (302)
T 3s25_A 21 FCESDGEVFFSNTND--------NGRLYAMNI-DGSNIHKLSNDT-----------------AMYINA-DKNYVYYVRNN 73 (302)
T ss_dssp EEEETTEEEEEEGGG--------TTEEEEEET-TSCSCEEEEEEE-----------------EEEEEE-CSSEEEEEEEC
T ss_pred EEEeCCEEEEEeCCC--------CceEEEEcC-CCCCCEEccCCc-----------------eeeEEE-cCCEEEEEECC
Confidence 456777777765320 046666664 444344443221 234578 999988887
Q ss_pred C-------------CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 339 K-------------NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 339 d-------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
+ ..|+..++...... . +.. -....|+|++..|++... +.++...|+.+++.........
T Consensus 74 ~~~~~~~~~~~~n~~~Iy~i~~dg~~~~--~-l~~--~~~~~~s~~g~~Iy~~~~---~~~~~~~Iy~~~~dGs~~~~lt 145 (302)
T 3s25_A 74 NQKITSQTFFSYDRNSLCRIKRNGHGST--V-LDP--DPCIYASLIGNYIYYLHY---DTQTATSLYRIRIDGEEKKKIK 145 (302)
T ss_dssp C------CCSSCCSEEEEEEETTSCCCE--E-EEC--SCEEEEEEETTEEEEEEE---SSSSCEEEEEEETTSCCCEEEE
T ss_pred CCcccccceeccCCCeEEEEeCCCCcce--E-eec--CCccEEEEeCCEEEEEee---cCCCCceEEEEECCCCCeEEEe
Confidence 2 24555555544311 1 111 123478889999987310 1356677888887643321111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
. ... ..++++|+.|+...... -.|+.+...+.....+ + .+... ..++|++.+|+......
T Consensus 146 ~-~~~----~~~~~~g~~iy~t~~g~----------~~Iy~~~l~g~~~~~l-~---~~~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 146 N-HYL----FTCNTSDRYFYYNNPKN----------GQLYRYDTASQSEALF-Y---DCNCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp S-SCC----CCSEEETTEEEEECTTT----------CCEEEEETTTTEEEEE-E---CSCEE-EEEEEETTEEEEEEGGG
T ss_pred C-CCc----eEeeEECCEEEEEeCCC----------ceEEEEECCCCCEEEE-e---CCCcc-ceeeecCCEEEEEEcCC
Confidence 1 111 34678899888775522 2577777655543333 3 23332 34669999999887643
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECC
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDP 565 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~sp 565 (712)
. ..|..-+++... ...+....+ ..|+|+|++|+.+.... .+.|...+++......... ..+. .+++
T Consensus 206 ~-~~I~~~~ldG~~-------~~~Lt~~~~--~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~-~~~~--~i~i 271 (302)
T 3s25_A 206 D-NAIVHVNINNPN-------PVVLTEANI--EHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAK-GEFC--NINV 271 (302)
T ss_dssp T-TEEEEECSSSCC-------CEECSCSCE--EEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEE-SCEE--EEEE
T ss_pred C-cEEEEEECCCCC-------eEEEeCCCc--ceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeC-Cccc--eEEE
Confidence 2 256666664432 122223333 45899999998775322 4778888888533221111 1222 4566
Q ss_pred CCCEEEEEEc
Q 005140 566 TGRYVATAVT 575 (712)
Q Consensus 566 dg~~l~t~s~ 575 (712)
.+.+|+....
T Consensus 272 ~~d~Iy~td~ 281 (302)
T 3s25_A 272 TSQYVYFTDF 281 (302)
T ss_dssp CSSEEEEEET
T ss_pred eCCEEEEEEC
Confidence 7778777764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.14 Score=56.10 Aligned_cols=162 Identities=9% Similarity=0.000 Sum_probs=93.2
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-----CCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-----NKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-----~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
..+.|.+....|+....... .|+++...+.....+-.. .....+..+++.+.+..|+.+....
T Consensus 343 ~~ld~d~~~~~iy~sD~~~~----------~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~-- 410 (628)
T 4a0p_A 343 RAIDYDPLDKQLYWIDSRQN----------MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEAT-- 410 (628)
T ss_dssp EEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTT--
T ss_pred eEEEEecCCCeEEEEecCcc----------eEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCC--
Confidence 34566666666665543322 455555444332222111 0134678899999888777665432
Q ss_pred CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee--eeeccccceeeEEECC
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MATAEHFMATDVEWDP 565 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~--~~~~~~~~v~~~~~sp 565 (712)
..|.+.+++... ...+..-.......|++.|...+|+.+..+...+.|...+++.... +....-...+.+++++
T Consensus 411 ~~I~v~~~~G~~----~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~ 486 (628)
T 4a0p_A 411 NVINVTRLDGRS----VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 486 (628)
T ss_dssp TEEEEEETTSCE----EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred CEEEEEECCCCe----EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence 278888874321 1122222233578999999555666555432112677777774322 2233345678999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCcee
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
+++.|..+... .+.|...+++|...
T Consensus 487 ~~~~LYw~D~~----~~~I~~~~~dG~~r 511 (628)
T 4a0p_A 487 RLGKLFWADSD----LRRIESSDLSGANR 511 (628)
T ss_dssp TTTEEEEEETT----TTEEEEEETTSCSC
T ss_pred CCCEEEEEeCC----CCEEEEEeCCCCce
Confidence 98888777652 46777778777543
|
| >2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=57.17 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=64.8
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhcc-----CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQI-----GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.++|-+-|||- ++ ..-++.+..++ |.+++ |.+.-|- |=|+|+|.+...|.+|.-.|||+
T Consensus 21 ~rtiaL~~ipDtvn-------darIr~lve~~~~i~~g~i~K--I~L~pDH------~GAivef~d~~~AgKasLaL~G~ 85 (117)
T 2l9w_A 21 ETLICLFPLSDKVS-------PSLICQFLQEEIHINEKDIRK--ILLVSDF------NGAIIIFRDSKFAAKMLMILNGS 85 (117)
T ss_dssp TSCEEEECCCTTCC-------HHHHHHHHHHHTCCCTTTCSE--EEEETTT------TEEEEECSCHHHHHHHHHHHSSE
T ss_pred CcEEEEecCCCCCC-------HHHHHHHHhhhhccCccceeE--EEEecCC------CceEEEEccchhhHHHHhhcCCe
Confidence 56899999994 55 55588888888 99999 9998875 34999999999999999999999
Q ss_pred ccCCceEEEEEeecccccc
Q 005140 133 KLDRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~~~~ 151 (712)
.|+++ ++++....+..+.
T Consensus 86 ef~gr-~Lr~gTv~eL~~~ 103 (117)
T 2l9w_A 86 QFQGK-VIRSGTINDMKRY 103 (117)
T ss_dssp EETTE-EEEEECHHHHHHH
T ss_pred eecCe-EEEecCHHHHHhc
Confidence 99985 9999887775544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.041 Score=59.95 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=46.2
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc-cce--eeEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMA--TDVEWD 564 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v--~~~~~s 564 (712)
.|.-||+.+++. +-+.. ..+...-.....|..+++++. ||.|+.||..+++++-+... ..+ +-+.|.
T Consensus 467 ~l~A~D~~tG~~------~W~~~~~~~~~~g~~~tagglvf~g~~---dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 467 SLRAMDPVSGKV------VWEHKEHLPLWAGVLATAGNLVFTGTG---DGYFKAFDAKSGKELWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp EEEEECTTTCCE------EEEEEESSCCCSCCEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCCE------EEEecCCCCCcccceEeCCCEEEEECC---CCcEEEEECCCCCEEEEecCCCCcccCceEEE
Confidence 677777766552 22211 122222222234667777877 99999999999998876332 122 236677
Q ss_pred CCCC-EEEEEEc
Q 005140 565 PTGR-YVATAVT 575 (712)
Q Consensus 565 pdg~-~l~t~s~ 575 (712)
.+|+ ||++.+.
T Consensus 538 ~~G~qYv~~~~G 549 (582)
T 1flg_A 538 QDGEQYLGVTVG 549 (582)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEcc
Confidence 8887 5554443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.40 E-value=0.16 Score=52.33 Aligned_cols=231 Identities=7% Similarity=-0.104 Sum_probs=118.8
Q ss_pred cEEEEEecCceEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc----eeee
Q 005140 226 TYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK----VMRD 300 (712)
Q Consensus 226 ~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~----~~~~ 300 (712)
.+|+.+....|+..++. ........ ....+..++|++.+..|....... +.|..+++.... ....
T Consensus 84 ~~ll~~~~~~I~~i~l~-~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~---------~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ---------RMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp CEEEEEETTEEEEECTT-SCSCEEEECSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEEC------CCCEEE
T ss_pred ceeEEeccceeEEEccC-CcceeEeccccCcceEEeeeeccCceEEEecCC---------CeEEEEEcccCCCCCcceEE
Confidence 46777777778888887 33332223 234589999999777776654431 678888875421 1111
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEE
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLF 378 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~ 378 (712)
+...... +. .+++.+ .+..|+... .+.|.+.++..................+++.|.+..|.+.
T Consensus 154 ~~~~~~~--------p~-----glavD~-~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 154 ISRDIQA--------PD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219 (400)
T ss_dssp ECSSCSC--------EE-----EEEEET-TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEE
T ss_pred EeCCCCC--------cc-----cEEEEe-cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEE
Confidence 1111110 11 345554 444444333 7889998887443221111233447889999977766541
Q ss_pred eecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005140 379 VPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 458 (712)
Q Consensus 379 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 458 (712)
......+|+.+++............-.....+++++++..|+++..... .|+.++..+.....+.
T Consensus 220 -----d~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~----------~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 220 -----DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTIL 284 (400)
T ss_dssp -----ECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCCCEEEE
T ss_pred -----eCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC----------EEEEEeCCCCccEEEE
Confidence 1222356777776543211111101112345678888888877654322 4555544433322222
Q ss_pred e-cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 459 L-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 459 l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
- ...-.....+++ ++..++.+.... ..|..++..++.
T Consensus 285 ~~~~~l~~P~gl~v--~~~~lywtd~~~--~~V~~~~~~~G~ 322 (400)
T 3p5b_L 285 EDEKRLAHPFSLAV--FEDKVFWTDIIN--EAIFSANRLTGS 322 (400)
T ss_dssp ECSSTTSSEEEEEE--ETTEEEEEESSS--CSEEEEESSSCC
T ss_pred eCCCCCCCCEEEEE--eCCEEEEecCCC--CeEEEEEcCCCC
Confidence 1 111233445555 455555555432 167777754443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.39 E-value=0.081 Score=52.64 Aligned_cols=201 Identities=5% Similarity=-0.117 Sum_probs=108.6
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecc-cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLID-KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+.|.+ .+..|..+. .+.|..+++....... ...........+++.+.+..|.+. .....+|..++....
T Consensus 39 ~ld~d~-~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~------d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 39 AVDFVF-SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT------DSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEG-GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSC
T ss_pred EEEEEe-CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEE------ECCCCEEEEEECCCC
Confidence 588988 666665554 7889999887553211 111122346778888766555441 223346777776543
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
.........-.....++..|.+.+|+....... -.|+.+...+.....+ +...-.....++|+|++..|+
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~---------~~I~r~~~dG~~~~~~-~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV---------PKIERAGMDGSSRFII-INSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS---------CEEEEEETTSCSCEEE-ECSSCSCEEEEEEETTTTEEE
T ss_pred cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC---------CEEEEEEcCCCCeEEE-EECCCCCccEEEEeccCCEEE
Confidence 211111001112234566777666666543211 2566666554332222 212234567899999888888
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
.+.... ..|..++++.... ..+..-.......+++. +..++.+..+ .+.|..++..+++..
T Consensus 182 ~aD~~~--~~I~~~d~dG~~~----~~~~~~~~~~P~glav~--~~~lywtd~~--~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 182 WADAKL--NFIHKSNLDGTNR----QAVVKGSLPHPFALTLF--EDILYWTDWS--THSILACNKYTGEGL 242 (318)
T ss_dssp EEETTT--TEEEEEETTSCSC----EEEECSCCSCEEEEEEE--TTEEEEEETT--TTEEEEEETTTCCSC
T ss_pred EEECCC--CEEEEEcCCCCce----EEEecCCCCCceEEEEe--CCEEEEEecC--CCeEEEEECCCCCce
Confidence 876543 2888888854221 12222112234566664 3445444431 678888988766543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.3 Score=55.01 Aligned_cols=229 Identities=8% Similarity=-0.100 Sum_probs=115.9
Q ss_pred EEEEEecCceEEeecccCccee-eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeec
Q 005140 227 YLATVHRQGAAVWGGANTFNRL-MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDF 301 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~-~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~ 301 (712)
+|+.+....|+..++. ..... .......+..|+|++.+..|+...... +.|+.+++... .....+
T Consensus 397 ~Ll~an~~~Ir~i~l~-~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~---------~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ---------RMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp EEEEECBSSEEEECTT-SCCCEEEECSCSSEEEEEEETTTTEEEEEETTT---------TEEEEEEC--------CEEEE
T ss_pred ccccccccceeEeecc-CCcceeeecCCCceEEEeecccCCeeEEeeccc---------eeEEEEeccCCCCCcceeEEE
Confidence 5666666667777776 33222 222344588999999766665554431 67888887532 111112
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..... .+. .+++.+ .+..|+.+. .+.|.+.++..................|++.|.+..|.+
T Consensus 467 ~~~l~--------~P~-----GLAvD~-~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYw-- 530 (791)
T 3m0c_C 467 SRDIQ--------APD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW-- 530 (791)
T ss_dssp CSSCS--------CCC-----EEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE--
T ss_pred ecCCC--------Ccc-----eeeeee-cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEE--
Confidence 11111 111 356665 555444443 889999998744321111123345789999998766654
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
.-.+...+|+.+++............-.....|+..+.+..|+++-.... .|+.+...+.....+.-
T Consensus 531 ---tD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~----------~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 531 ---TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTILE 597 (791)
T ss_dssp ---EECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEEE
T ss_pred ---ecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC----------cEEEEecCCCceEEEec
Confidence 11223357888777543321111101112334566777777777643322 45555544433322221
Q ss_pred c-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 460 D-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 460 ~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
. ..-....+|++ .+.+|+.+.... ..|...+..++
T Consensus 598 ~~~~l~~P~glav--~~~~lYwtD~~~--~~I~~~dk~tG 633 (791)
T 3m0c_C 598 DEKRLAHPFSLAV--FEDKVFWTDIIN--EAIFSANRLTG 633 (791)
T ss_dssp CTTTTSSEEEEEE--ETTEEEEEETTT--TEEEEEETTTC
T ss_pred CCCccCCCCEEEE--eCCEEEEEECCC--CEEEEEeCCCC
Confidence 0 11123334444 555666665533 16666665444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.085 Score=55.44 Aligned_cols=160 Identities=7% Similarity=0.043 Sum_probs=84.1
Q ss_pred eEEecCCC--CCEEEEec-CCeEEEEEcCCceecccccc---cccCeeeEEE-------CCCCCeEEEEeecCCCCCCCe
Q 005140 323 VFRWGGGK--DKYFAKLG-KNMISVYETESFTLIDKKSL---KVENVMDFSW-------SPTDPIISLFVPELGGGNQPA 389 (712)
Q Consensus 323 ~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~-------sp~~~~la~~~~~~~~~~~~~ 389 (712)
.++|+| . ++++++.. .+.|++.|+.++.+...... .......++| ++++..|.+.....+......
T Consensus 143 ~la~dp-~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 143 RLAFDP-LNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEET-TEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred EEEEcc-CCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 478887 4 44444444 57788899887655422111 2234788999 999986655211100001134
Q ss_pred EEEEEecCC-ccce-----eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC---------Cc--
Q 005140 390 RVSLVQIPS-KEEL-----RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER---------DI-- 452 (712)
Q Consensus 390 ~i~~~~~~~-~~~~-----~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~-- 452 (712)
.|..++... .... .....+ .....++.+|++.+|++...... .++.++.. ..
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g----------~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKG----------QVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTT----------EEEEECHHHHHHHHHTTCCCC
T ss_pred eEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCC----------EEEEEecccccccccCceeec
Confidence 466664322 1111 111111 13345567887777766554432 34444322 11
Q ss_pred ---c-----e-eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 453 ---P-----I-EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 453 ---~-----~-~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
+ . ....+ +.......++|+|+|++|+++.... ..|+.++...
T Consensus 291 p~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~--h~I~kid~dg 341 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINN--HYFMRSDYDE 341 (496)
T ss_dssp CBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT--TEEEEEEEET
T ss_pred ccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCC--CEEEEEecCC
Confidence 0 1 11223 2234567899999999777765533 2788877643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.033 Score=60.62 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=46.2
Q ss_pred CceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeeccc-ce--eeeEEecC
Q 005140 536 NGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD-HF--FQFLWRPR 610 (712)
Q Consensus 536 dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~-~i--~~~~w~p~ 610 (712)
+|.|..||+.+++.+-+... ..+........+..+++++. |+.++.||.. |+.+.+.... .+ .-+.+.++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~-----dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~ 517 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATL-----DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK 517 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcC-----CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEEC
Confidence 58899999999888765332 22333333334666777777 8999999975 7766555331 11 22345566
Q ss_pred CCCCC
Q 005140 611 PPSFL 615 (712)
Q Consensus 611 ~~~l~ 615 (712)
++.++
T Consensus 518 G~~yv 522 (571)
T 2ad6_A 518 GKQYI 522 (571)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 65443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.23 Score=52.00 Aligned_cols=304 Identities=11% Similarity=0.063 Sum_probs=156.9
Q ss_pred cEEEEEEccCCceeeeccCCCcccccC--C---------CC--CcCC-CCcCeEEecCC--CCCEEEEec--CCeEEEEE
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVG--G---------TG--GVAG-VSWPVFRWGGG--KDKYFAKLG--KNMISVYE 346 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~--~---------~~--~~~~-~~~~~~~~s~~--dg~~la~~~--d~~i~iwd 346 (712)
|.|+|+-+.+++.++.+..-.....+| . .+ -..| .+.|.+++..+ ||+||..-. +..|-..+
T Consensus 80 G~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri~ 159 (638)
T 3sbq_A 80 GEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKANSRVARIR 159 (638)
T ss_dssp CCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTTTEEEEEE
T ss_pred ceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCCcceEEEE
Confidence 889999999999888765432221100 0 00 0122 33456666543 677877776 77788888
Q ss_pred cCCceecccccc-cccCeeeEEEC--CCCCeEEEEe----e--cCCCC---CCC---eEEEEEecCCccceeeeeeeeec
Q 005140 347 TESFTLIDKKSL-KVENVMDFSWS--PTDPIISLFV----P--ELGGG---NQP---ARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 347 ~~~~~~~~~~~~-~~~~v~~~~~s--p~~~~la~~~----~--~~~~~---~~~---~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
+..++.-....+ ...++.++.+- |...++.... | ..+.. +.. .....++..+.+..-+.. ...+
T Consensus 160 l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~-v~gn 238 (638)
T 3sbq_A 160 LDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQVI-VDGN 238 (638)
T ss_dssp TTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEEEE-ESSC
T ss_pred CCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEEEE-cCCC
Confidence 887765432222 33457777776 6767766431 1 11000 000 111112222222111111 1111
Q ss_pred ceeEEECcCCCEEEEEEcccccc----------------------------c-ccccc--cEEEEEEec----CCcceeE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKT----------------------------K-KSTYT--GFELFRIKE----RDIPIEV 456 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~----------------------------~-~~~~~--~~~l~~l~~----~~~~~~~ 456 (712)
--.....++|.+.++.+-+.... + ....+ .+.+.+.+. .......
T Consensus 239 ld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~ 318 (638)
T 3sbq_A 239 LDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRY 318 (638)
T ss_dssp CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEE
T ss_pred hhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCceEEE
Confidence 12234577888877765433210 0 00111 233333322 1111111
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc-------cCceeEEEEeC-CCceeEEEEccCCCeEE
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH-------AGRVSKLTTLK-GKQANALFWSPSGRFIV 528 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~-------~~~~~~~~~~~-~~~v~~l~~spdg~~l~ 528 (712)
+.. ....+.+..+|||+++++++.-.+ ++.++++..... ..+-..+.... +-.....+|.++|.-..
T Consensus 319 iP~---pksPHGv~vsPDGkyi~v~GKLsp--tvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYT 393 (638)
T 3sbq_A 319 VPV---PKNPHGCNTSSDGKYFIAAGKLSP--TCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYT 393 (638)
T ss_dssp EEE---SSSCCCEEECTTSCEEEEECTTSS--BEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred EeC---CCCCcceeeCCCCCEEEEcCCCCC--eEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEe
Confidence 222 344566889999999998877443 899999874211 01111233333 33457889999993333
Q ss_pred EEeccCCCceEEEEECCcc----------eeeee-ccccceeeEE------ECCCCCEEEEEEcc---ce-----ecccc
Q 005140 529 LAGLKGFNGQLEFYNVDEL----------ETMAT-AEHFMATDVE------WDPTGRYVATAVTS---VH-----EMENG 583 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~----------~~~~~-~~~~~v~~~~------~spdg~~l~t~s~~---~~-----~~d~~ 583 (712)
+.-. |.+|.-|++... .++.. .-+..+-.+. -.|||+||++...- +. --...
T Consensus 394 tlfi---dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen 470 (638)
T 3sbq_A 394 TLFI---DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPEN 470 (638)
T ss_dssp EETT---TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEE
T ss_pred eeee---cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCc
Confidence 3334 899999999743 22322 1122333333 36899999998752 10 00224
Q ss_pred EEEEEecCceeeee
Q 005140 584 FNIWSFNGKLLYRT 597 (712)
Q Consensus 584 v~iw~~~g~~~~~~ 597 (712)
-++.|++|..+.-.
T Consensus 471 ~QlidIsGdkM~lv 484 (638)
T 3sbq_A 471 DQLIDISGDEMKLV 484 (638)
T ss_dssp EEEEECSSSSCEEE
T ss_pred ceeEecCCCceEEE
Confidence 58899998766544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.056 Score=54.75 Aligned_cols=107 Identities=10% Similarity=0.149 Sum_probs=57.5
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeec-----CCCeeEEEecCC---CCEEEEEcCCCCCCCcCCCccEE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-----HPQVKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-----~~~v~~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I 287 (712)
-..++|.|+|+++++-....|.+++ .+....+.... ......|+|+|+ +.+|..+...... .....|
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~----~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG----GLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT----SSEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC----CCccEE
Confidence 3579999999977665443377777 42333333222 235899999998 5555444332000 011467
Q ss_pred EEEEccCCce------eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 288 NIFDVRTGKV------MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 288 ~iwd~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
..|+...+.. +..+....... . ....+.|.| ||.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~--------h--~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGL--------H--SGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCC--------C--CCCCEEECT-TSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCC--------c--CCceEEECC-CCCEEEEEC
Confidence 7787654321 11122100000 0 011589999 998777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 712 | ||||
| d2disa1 | 96 | d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 { | 1e-06 | |
| d1cvja1 | 80 | d.58.7.1 (A:11-90) Poly(A)-binding protein {Human | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-06 | |
| d1b7fa2 | 85 | d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil | 1e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1fxla2 | 85 | d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho | 4e-05 | |
| d2f9da1 | 114 | d.58.7.1 (A:12-125) Pre-mRNA branch site protein p | 7e-05 | |
| d2cpha1 | 94 | d.58.7.1 (A:454-547) Probable RNA-binding protein | 1e-04 | |
| d1o0pa_ | 104 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 1e-04 | |
| d2cqba1 | 89 | d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer | 1e-04 | |
| d2cqca1 | 83 | d.58.7.1 (A:109-191) Arginine/serine-rich splicing | 2e-04 | |
| d1h2vz_ | 93 | d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro | 2e-04 | |
| d2cpfa1 | 85 | d.58.7.1 (A:362-446) Probable RNA-binding protein | 2e-04 | |
| d1no8a_ | 78 | d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu | 3e-04 | |
| d1wf2a_ | 98 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 3e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-04 | |
| d2adba1 | 108 | d.58.7.1 (A:177-284) Polypyrimidine tract-binding | 4e-04 | |
| d2u2fa_ | 85 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 4e-04 | |
| d2dita1 | 99 | d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Huma | 5e-04 | |
| d1b7fa1 | 82 | d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil | 7e-04 | |
| d1nu4a_ | 91 | d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1rk8a_ | 88 | d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr | 0.002 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.002 | |
| d1hd0a_ | 75 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.003 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.004 |
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 19/104 (18%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ + +P K I + +++ D + + K+ G+ F+EY + +
Sbjct: 4 LFIGGIP------KMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRA 57
Query: 122 AELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKP 165
A +A+ K + + V +WA PE
Sbjct: 58 AAMARRKLMP-----------GRIQLWGHQIAV--DWAEPEIDV 88
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (102), Expect = 3e-06
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V +L + E ++ + +S G I + + D T++SLGY ++ + P +
Sbjct: 3 LYVGDLH------PDVTEAMLYEKFSPAGPILS--IRVCRDMITRRSLGYAYVNFQQPAD 54
Query: 122 AELAKEKTNGYKLD 135
AE A + N +
Sbjct: 55 AERALDTMNFDVIK 68
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 8e-06
Identities = 50/330 (15%), Positives = 87/330 (26%), Gaps = 54/330 (16%)
Query: 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315
V + F P +V+ S DA I ++D TG R KG T
Sbjct: 20 VTRVIFHPVFSVMVSAS-------EDAT---IKVWDYETGDFERTLKGH--------TDS 61
Query: 316 VAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPII 375
V +S+ I +++ + F I NV S P I
Sbjct: 62 VQDISFDHSGKLLASCSAD-----MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116
Query: 376 SLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV--------K 427
++ + + ++ + ++ + G +A
Sbjct: 117 VSA-------SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169
Query: 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487
TK K+ P ++ G D
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK-- 227
Query: 488 PDISFYSMRTAQHAGRVSKLTTLKGKQA--NALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545
I + + T L TL G + + G+FI+ + L ++
Sbjct: 228 -TIKMWDVSTGMC------LMTLVGHDNWVRGVLFHSGGKFILSCA---DDKTLRVWDYK 277
Query: 546 ELETMATAEHFMA--TDVEWDPTGRYVATA 573
M T T +++ T YV T
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 42.2 bits (99), Expect = 1e-05
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V NLP + + I+ + G I + + D T + G F+ YN +E
Sbjct: 9 LYVTNLP------RTITDDQLDTIFGKYGSIVQK--NILRDKLTGRPRGVAFVRYNKREE 60
Query: 122 AELAKEKTNGYKLD 135
A+ A N +
Sbjct: 61 AQEAISALNNVIPE 74
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.6 bits (104), Expect = 3e-05
Identities = 38/333 (11%), Positives = 79/333 (23%), Gaps = 24/333 (7%)
Query: 227 YLATVHRQGAAVW-GGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285
L W A L + L S+ + +
Sbjct: 37 TLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTD 96
Query: 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVY 345
+ +FD T + D + D V + F G + +
Sbjct: 97 YVEVFDPVTFLPIADIEL-PDAPRFSVGPRVHIIGNC----ASSACLLFFLFGSSAAAGL 151
Query: 346 ETESFTLIDKKSLKVENVMDFSWSPTDPII------SLFVPELGGGNQPARVSLVQIPSK 399
+ + K + SL +L A + Q
Sbjct: 152 SVPGASDD--QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209
Query: 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459
+ + + + W + L + T K+ G E R + +
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269
Query: 460 DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALF 519
+ + R + + S + Q +G +S G ++A+
Sbjct: 270 AKLKNTDGIMILTVEHSRSC----LAAAENTSSVTASVGQTSGPIS-----NGHDSDAII 320
Query: 520 WSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552
+ G A L+ Y+ + ++
Sbjct: 321 AAQDGASDNYANS-AGTEVLDIYDAASDQDQSS 352
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (94), Expect = 4e-05
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V LP + + +++SQ G I + VD T S G FI ++ E
Sbjct: 9 LYVSGLP------KTMTQKELEQLFSQYGRIITS--RILVDQVTGVSRGVGFIRFDKRIE 60
Query: 122 AELAKEKTNGYKLD 135
AE A + NG K
Sbjct: 61 AEEAIKGLNGQKPS 74
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (94), Expect = 7e-05
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP 119
I+ + NLP ++ + I+ + G I++ + + G ++ Y
Sbjct: 8 RILYIRNLP------YKITAEEMYDIFGKYGPIRQIRVGNTPETR-----GTAYVVYEDI 56
Query: 120 QEAELAKEKTNGYKLD 135
+A+ A + +G+ +
Sbjct: 57 FDAKNACDHLSGFNVC 72
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.5 bits (92), Expect = 1e-04
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE-TQKSLGYCFIEYNTPQ 120
I+V N+P F+ + IR+++S G +K + +P T G+ F+++ T Q
Sbjct: 11 ILVRNIP------FQANQREIRELFSTFGELKT--VRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 121 EAELAKEK-TNGYKLD 135
+A+ A + L
Sbjct: 63 DAKKAFNALCHSTHLY 78
|
| >d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 1e-04
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 63 VVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEA 122
+V ++ E++E++ +R S+ G++K + PVD G F+E+ + +
Sbjct: 12 MVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 71
Query: 123 ELAKEKTNGYKLD----RAHIFAVNMFDDFD 149
+ A + G K + + D
Sbjct: 72 QKAMQGLTGRKFANRVVVTKYCDPDSYHRRD 102
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 1e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP 119
++ V L E + V+ + G I + +P+D ET+K G+ F+E+
Sbjct: 6 RVLYVGGLA------EEVDDKVLHAAFIPFGDITDI--QIPLDYETEKHRGFAFVEFELA 57
Query: 120 QEAELAKEKTNGYKLD 135
++A A + N +L
Sbjct: 58 EDAAAAIDNMNESELF 73
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 2e-04
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNT 118
+ V L E +R+++S+ G I + + D ++++S G+ F+ +
Sbjct: 9 NCCLGVFGLS------LYTTERDLREVFSKYGPIADV--SIVYDQQSRRSRGFAFVYFEN 60
Query: 119 PQEAELAKEKTNGYKLD 135
+A+ AKE+ NG +LD
Sbjct: 61 VDDAKEAKERANGMELD 77
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (90), Expect = 2e-04
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V NL F E I +++S+ G IK+ M +D + + G+CF+EY + +
Sbjct: 10 LYVGNLS------FYTTEEQIYELFSKSGDIKKI--IMGLDKMKKTACGFCFVEYYSRAD 61
Query: 122 AELAKEKTNGYKLD 135
AE A NG +LD
Sbjct: 62 AENAMRYINGTRLD 75
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.1 bits (88), Expect = 2e-04
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 22/105 (20%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKED-GLWMPVDPETQKSLGYCFIEYNTPQ 120
+ + NL F E ++ ++S++G IK S+G+ F+EY P+
Sbjct: 1 LFIKNLN------FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPE 54
Query: 121 EAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKP 165
+A+ A ++ G+ +D ++V + KP
Sbjct: 55 QAQKALKQLQGHTVD-------------GHKLEV--RISERATKP 84
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (87), Expect = 3e-04
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
++V NL F + I++++++ G +K+ + + +SLG + + +
Sbjct: 3 LLVSNLD------FGVSDADIQELFAEFGTLKKAAVHYD---RSGRSLGTADVHFERKAD 53
Query: 122 AELAKEKTNGYKLD 135
A A ++ NG LD
Sbjct: 54 ALKAMKQYNGVPLD 67
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (89), Expect = 3e-04
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 15/74 (20%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ + NL + + I+S+ G I + G+ F++Y +
Sbjct: 18 VFIGNLN-----TLVVKKSDVEAIFSKYGKIVGCSVHK----------GFAFVQYVNERN 62
Query: 122 AELAKEKTNGYKLD 135
A A +G +
Sbjct: 63 ARAAVAGEDGRMIA 76
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.3 bits (95), Expect = 3e-04
Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 12/165 (7%)
Query: 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP--IEVLELDNKNDKIIAFA 470
+ +G V + +G K D+ + I A
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 471 WEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLA 530
+ P G+ FA D+ + ++ ++ +S SGR ++
Sbjct: 234 FFPNGNAFATGSDDA-----TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 531 GLKGFNGQLEFYNVDELETMATAE-HFMA-TDVEWDPTGRYVATA 573
+ ++ + + H + + G VAT
Sbjct: 289 Y---DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 7e-04
Identities = 25/188 (13%), Positives = 45/188 (23%), Gaps = 23/188 (12%)
Query: 138 HIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLW 197
+ D + D + +T L+ FV + + LW
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 198 NDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--- 254
D R + + + + P G AT LM Y+H
Sbjct: 212 -DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270
Query: 255 -QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313
+ + FS + L+ N++D G
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDF----------NCNVWDALKADRAGVLAGH--------D 312
Query: 314 GGVAGVSW 321
V+ +
Sbjct: 313 NRVSCLGV 320
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
I+V+NL + V+ +I+S+ G + + T+ + ++Y P
Sbjct: 10 IIVENLF------YPVTLDVLHQIFSKFGTVLKIIT------FTKNNQFQALLQYADPVS 57
Query: 122 AELAKEKTNGYKL 134
A+ AK +G +
Sbjct: 58 AQHAKLSLDGQNI 70
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (87), Expect = 4e-04
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ + LP + ++++ + + D T S GY F EY
Sbjct: 4 LFIGGLP------NYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSKGYAFCEYVDINV 55
Query: 122 AELAKEKTNGYKLD 135
+ A NG +L
Sbjct: 56 TDQAIAGLNGMQLG 69
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (87), Expect = 5e-04
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 73 EKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132
++ +R S+ G I++ + + G + + P+EA+ + +G
Sbjct: 27 LVLNEIREDLRVECSKFGQIRK------LLLFDRHPDGVASVSFRDPEEADYCIQTLDGR 80
Query: 133 KLDRAHIFAVNMFDDFDKF 151
I +D +
Sbjct: 81 WFGGRQI-TAQAWDGTTDY 98
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 36.9 bits (85), Expect = 7e-04
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
++V+ LP + + + ++ IG I + D +T S GY F+++ + +
Sbjct: 5 LIVNYLP------QDMTDRELYALFRAIGPINT--CRIMRDYKTGYSYGYAFVDFTSEMD 56
Query: 122 AELAKEKTNGYKLD 135
++ A + NG +
Sbjct: 57 SQRAIKVLNGITVR 70
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.001
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP 119
+ I ++NL K K ++L+ + I+S+ G I + + K G F+ +
Sbjct: 4 HTIYINNLN--EKIKKDELKKSLHAIFSRFGQI-----LDILVSRSLKMRGQAFVIFKEV 56
Query: 120 QEAELAKEKTNGYKLD 135
A A G+
Sbjct: 57 SSATNALRSMQGFPFY 72
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 0.001
Identities = 30/341 (8%), Positives = 79/341 (23%), Gaps = 16/341 (4%)
Query: 219 VQWSPLGTYLATVHRQGAAVWGG-----ANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSS 273
+P + A + + + ++ S+
Sbjct: 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHAST 66
Query: 274 HEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332
R + +FD T D A F VG + ++ +
Sbjct: 67 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126
Query: 333 YFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 392
+G + + + D + V G +
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186
Query: 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV-KVDRYTKTKKSTYTGFELFRIKERD 451
V P E L +S ++ W + + + +
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 452 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511
P ++ + + + + +T + +
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF---VVVLDAKTGERLAKFE-----M 298
Query: 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552
G + +++ S + ++ A L + L ++ + E + +
Sbjct: 299 GHEIDSINVSQDEKPLLYA-LSTGDKTLYIHDAESGEELRS 338
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 35.9 bits (82), Expect = 0.002
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNT 118
G I+ V ++ E E I++ + G + + + +D T S GY +EY T
Sbjct: 7 GWILFVTSIH------EEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYET 58
Query: 119 PQEAELAKEKTNGYKLD 135
++A AKE NG ++
Sbjct: 59 HKQALAAKEALNGAEIM 75
|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Non-globular all-alpha subunits of globular proteins superfamily: Stathmin family: Stathmin domain: Stathmin 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.8 bits (85), Expect = 0.002
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 609 PRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWK 668
+ E+ ++ + ++ K EAE + E ERE + E +
Sbjct: 36 LPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ-KAIEENNNFIKMA 94
Query: 669 RLHEEEKMER-QMLRDGEASDEEEEYEAKEVEVEEV 703
+ +KME + R+ + E + K+ EEV
Sbjct: 95 KEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV 130
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.3 bits (81), Expect = 0.002
Identities = 11/74 (14%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ + L ++ + ++ +S+ G + + + +DP T +S G+ F+ + +
Sbjct: 2 MFIGGLS------WDTTKKDLKDYFSKFGEVVDC--TLKLDPITGRSRGFGFVLFKESES 53
Query: 122 AELAKEKTNGYKLD 135
+ ++ +KL+
Sbjct: 54 VDKVMDQ-KEHKLN 66
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.003
Identities = 39/337 (11%), Positives = 85/337 (25%), Gaps = 46/337 (13%)
Query: 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315
V + FS +YL T + ++ V G ++ +
Sbjct: 65 VCCVKFSNDGEYLATGCNK-----------TTQVYRVSDGSLVARLSD--------DSAA 105
Query: 316 VAGVSWPVFRWGGGKDKY-----FAKLGKNMISVYETESFTLIDKK-SLKVENVMDFSWS 369
D Y F+ GK + + E + D + V +
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429
+L G+ V + + + + ++ G Y+A
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS---- 485
+ TGF + R+ E D + + + G D
Sbjct: 226 DRAVRVWDSETGFLVERLDS-----ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280
Query: 486 -PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544
+ + S ++G ++ + + +I+ + + F++
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWDK 337
Query: 545 DELETMATAE-HF-------MATDVEWDPTGRYVATA 573
+ + H +A P AT
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.5 bits (85), Expect = 0.004
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA--NALFWS 521
+ I AW + A+ + ++ Y + ++ LK + W+
Sbjct: 8 EPISCHAWNKDRTQIAICPNNH---EVHIYEKSG----NKWVQVHELKEHNGQVTGVDWA 60
Query: 522 PSGRFIVLAGLKG 534
P IV G
Sbjct: 61 PDSNRIVTCGTDR 73
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.88 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.78 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.78 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.7 | |
| d1x5ua1 | 93 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.69 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d1h2vz_ | 93 | CBP20, 20KDa nuclear cap-binding protein {Human (H | 99.69 | |
| d1b7fa1 | 82 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.69 | |
| d1fxla2 | 85 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.69 | |
| d1uawa_ | 77 | Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | 99.68 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.68 | |
| d2cqca1 | 83 | Arginine/serine-rich splicing factor 10 {Human (Ho | 99.68 | |
| d1rk8a_ | 88 | RNA-binding protein 8 {Fruit fly (Drosophila melan | 99.68 | |
| d1cvja1 | 80 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.68 | |
| d2cq0a1 | 90 | Eukaryotic translation initiation factor 3 subunit | 99.67 | |
| d1b7fa2 | 85 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.67 | |
| d2u2fa_ | 85 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.67 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.67 | |
| d2cqba1 | 89 | Peptidyl-prolyl cis-trans isomerase E, N-terminal | 99.66 | |
| d1whwa_ | 99 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.66 | |
| d1no8a_ | 78 | Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 | 99.66 | |
| d1fxla1 | 82 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.65 | |
| d1hd0a_ | 75 | Heterogeneous nuclear ribonucleoprotein d0 {Human | 99.65 | |
| d1l3ka1 | 84 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.64 | |
| d2cqga1 | 90 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.64 | |
| d2cpha1 | 94 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.63 | |
| d2ghpa1 | 81 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.63 | |
| d2cpza1 | 102 | CUG triplet repeat RNA-binding protein 1 {Human (H | 99.62 | |
| d2cq4a1 | 101 | RNA binding protein 23 {Human (Homo sapiens) [TaxI | 99.62 | |
| d1x0fa1 | 75 | Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s | 99.62 | |
| d2cqda1 | 103 | RNA-binding region containing protein 1 {Human (Ho | 99.61 | |
| d1x5ta1 | 83 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.61 | |
| d2cpfa1 | 85 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.61 | |
| d1p1ta_ | 104 | Cleavage stimulation factor, 64 kda subunit {Human | 99.61 | |
| d1x5sa1 | 90 | Cold-inducible RNA-binding protein {Human (Homo sa | 99.61 | |
| d1x4ba1 | 103 | Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu | 99.61 | |
| d1u6fa1 | 139 | RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId | 99.6 | |
| d2cpia1 | 89 | E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc | 99.59 | |
| d1l3ka2 | 79 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.58 | |
| d1x4ea1 | 72 | RNA-binding motif, single-stranded-interacting pro | 99.58 | |
| d2ghpa3 | 86 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.57 | |
| d2cqia1 | 90 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.56 | |
| d1zh5a2 | 85 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.56 | |
| d2msta_ | 75 | Neural RNA-binding protein Musashi-1 {Mouse (Mus m | 99.56 | |
| d2cq3a1 | 93 | RNA-binding protein 9 {Human (Homo sapiens) [TaxId | 99.55 | |
| d2f9da1 | 114 | Pre-mRNA branch site protein p14 {Human (Homo sapi | 99.55 | |
| d1cvja2 | 89 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d2cpea1 | 101 | RNA-binding protein EWS {Human (Homo sapiens) [Tax | 99.54 | |
| d1x4ha1 | 98 | RNA-binding protein 28 {Mouse (Mus musculus) [TaxI | 99.53 | |
| d1x5oa1 | 101 | RNA-binding motif, single-stranded-interacting pro | 99.53 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.52 | |
| d2ghpa2 | 75 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.5 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.49 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.49 | |
| d2cpxa1 | 102 | RNA-binding protein 41, RBM41 {Human (Homo sapiens | 99.49 | |
| d2cpja1 | 86 | Non-POU domain-containing octamer-binding protein, | 99.47 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.47 | |
| d1x4ga1 | 96 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.46 | |
| d1fjeb1 | 91 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.46 | |
| d2b0ga1 | 83 | Splicesomal U1A protein {Drosophila melanogaster [ | 99.46 | |
| d2cqpa1 | 86 | RNA-binding protein 12 {Mouse (Mus musculus) [TaxI | 99.46 | |
| d1x4aa1 | 95 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.46 | |
| d2disa1 | 96 | Hypothetical protein FLJ20273 {Human (Homo sapiens | 99.45 | |
| d2adca1 | 109 | Polypyrimidine tract-binding protein {Human (Homo | 99.44 | |
| d1nu4a_ | 91 | Splicesomal U1A protein {Human (Homo sapiens) [Tax | 99.44 | |
| d1wg5a_ | 104 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.42 | |
| d1wf2a_ | 98 | Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu | 99.42 | |
| d1whxa_ | 111 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.42 | |
| d2adca2 | 88 | Polypyrimidine tract-binding protein {Human (Homo | 99.41 | |
| d1wg1a_ | 88 | Probable RNA-binding protein KIAA1579 {Human (Homo | 99.41 | |
| d2bz2a1 | 79 | Negative elongation factor E, NELF-E {Human (Homo | 99.4 | |
| d1fjca_ | 96 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.4 | |
| d2cpya1 | 103 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.4 | |
| d3begb1 | 87 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.4 | |
| d1wi8a_ | 104 | Eukaryotic translation initiation factor 4B {Human | 99.4 | |
| d1weza_ | 102 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.39 | |
| d2adba1 | 108 | Polypyrimidine tract-binding protein {Human (Homo | 99.39 | |
| d2cpda1 | 86 | APOBEC1 stimulating protein {Human (Homo sapiens) | 99.38 | |
| d1wi6a1 | 75 | Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M | 99.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.37 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.36 | |
| d2cqha1 | 80 | IGF-II mRNA-binding protein 2 isoform A {Human (Ho | 99.34 | |
| d1wela1 | 112 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.34 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | U2 | 99.32 | |
| d1weya_ | 104 | Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 | 99.32 | |
| d1whya_ | 97 | Putative RNA-binding protein 15B, Rbm15b {Mouse (M | 99.31 | |
| d1wf0a_ | 88 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.31 | |
| d1wg4a_ | 98 | Splicing factor, arginine/serine-rich 9 (SFRS9) {M | 99.3 | |
| d1u2fa_ | 90 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.29 | |
| d1x4fa1 | 99 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.29 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.27 | |
| d1x4da1 | 89 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.24 | |
| d2cq1a1 | 88 | Polypyrimidine tract-binding protein 2, PTBP2 {Hum | 99.23 | |
| d2dita1 | 99 | HIV Tat-specific factor 1 {Human (Homo sapiens) [T | 99.22 | |
| d1o0pa_ | 104 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.21 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.18 | |
| d1wwha1 | 81 | Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 | 99.17 | |
| d1wexa_ | 104 | Heterogeneous nuclear ribonucleoprotein L-like {Mo | 99.17 | |
| d2cq2a1 | 101 | Alkylation repair AlkB homolog 8, ALKBH8 {Human (H | 99.16 | |
| d1owxa_ | 113 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.11 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.09 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.98 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 98.97 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.91 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.8 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.78 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.77 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.76 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.63 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.52 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.51 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.48 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.38 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.21 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.15 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.1 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.93 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.64 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.58 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.16 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.92 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.31 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.16 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.05 | |
| d1ufwa_ | 95 | Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606] | 95.86 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.74 | |
| d2dgxa1 | 73 | Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960 | 95.64 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.59 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.56 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.37 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.34 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.28 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.72 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.52 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.41 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.3 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.68 | |
| d1uw4a_ | 91 | RNA processing protein UPF3x, RRM domain {Human (H | 91.22 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.89 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.13 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.87 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 81.44 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-33 Score=288.57 Aligned_cols=276 Identities=13% Similarity=0.159 Sum_probs=220.4
Q ss_pred CCCcccceEEEcCCCcEEEEEecCceEEeecccCcc---eeee---ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFN---RLMR---YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~---~~~~---~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
.|...|+|++|||+|++||+|+.+.|+|||+. ... .+.. ..|.+ |.+++|+|+|++|++++.|
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~-~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d--------- 118 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS-HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA--------- 118 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETT-STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------
T ss_pred CCCCcEEEEEECCCCCEEEEEECCEEEEEEcc-CCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc---------
Confidence 68899999999999999999984448999987 322 1111 23444 9999999999999999999
Q ss_pred ccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 284 RVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 284 ~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+.|++||+... +....+..|...+. .+.|+| ++.++++++ ++.|.+|++.+++.......+.
T Consensus 119 -g~i~iwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~ 183 (337)
T d1gxra_ 119 -STLSIWDLAAPTPRIKAELTSSAPACY-------------ALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp -SEEEEEECCCC--EEEEEEECSSSCEE-------------EEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred -ccccccccccccccccccccccccccc-------------cccccc-cccccccccccccccccccccccccccccccc
Confidence 99999998644 45566666665542 688999 999999988 9999999999988776666677
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..|.+++|+|++..+++ ++.++.++ +|++.+.+.
T Consensus 184 ~~v~~l~~s~~~~~~~~-----~~~d~~v~--i~d~~~~~~--------------------------------------- 217 (337)
T d1gxra_ 184 DGASCIDISNDGTKLWT-----GGLDNTVR--SWDLREGRQ--------------------------------------- 217 (337)
T ss_dssp SCEEEEEECTTSSEEEE-----EETTSEEE--EEETTTTEE---------------------------------------
T ss_pred ccccccccccccccccc-----cccccccc--cccccccee---------------------------------------
Confidence 88999999999999888 54555444 333322110
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
+....|...|.+++|+|++++|++++.++ .+++|+++++.. .....+...+++++|
T Consensus 218 ----------------~~~~~~~~~i~~l~~~~~~~~l~~~~~d~---~i~i~d~~~~~~-----~~~~~~~~~i~~v~~ 273 (337)
T d1gxra_ 218 ----------------LQQHDFTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNKPDK-----YQLHLHESCVLSLKF 273 (337)
T ss_dssp ----------------EEEEECSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSSCE-----EEECCCSSCEEEEEE
T ss_pred ----------------ecccccccceEEEEEcccccccceecccc---cccccccccccc-----ccccccccccceEEE
Confidence 01113478899999999999999999999 999999976542 122223457999999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.|+||++
T Consensus 274 s~~g~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~-----D~~I~vWdl 335 (337)
T d1gxra_ 274 AYCGKWFVSTGK---DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-----DKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-----TSCEEEEEE
T ss_pred CCCCCEEEEEeC---CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEEE
Confidence 999999999998 99999999998887765 56689999999999999999999 999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-32 Score=284.09 Aligned_cols=314 Identities=14% Similarity=0.178 Sum_probs=230.4
Q ss_pred EEEECCeeEEEecCCCCCCCcc---cccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeec----------
Q 005140 186 VIRSGTDTEVLWNDARHLKPEP---VYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA---------- 252 (712)
Q Consensus 186 ~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~---------- 252 (712)
+....++...+|+......... ...+|...|+||+|||||++||+|+.+.|+||++. ++..+.++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~-~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC---------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEec-ccceEeeeccccccccccc
Confidence 3455667777998733322221 22369999999999999999999985459999998 666554431
Q ss_pred ---------CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 253 ---------HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 253 ---------~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
|. .|.+++|||+|++|++++.| +.|++||..+++.+..+.+|...+.
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d----------g~v~i~~~~~~~~~~~~~~h~~~v~------------- 167 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAED----------RLIRIWDIENRKIVMILQGHEQDIY------------- 167 (388)
T ss_dssp --------CCCCBEEEEEECTTSSEEEEEETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------
T ss_pred ccccccccCCCCCEEEEEECCCCCcceecccc----------ccccccccccccccccccccccccc-------------
Confidence 22 38999999999999999999 9999999999999999998887763
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
++.|++ ++..+++++ ++.+++|+..+.........+. ....+.++ +++.+|++ ++.++.+++ |+..+..
T Consensus 168 ~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-----~~~d~~i~i--~~~~~~~ 238 (388)
T d1erja_ 168 SLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAA-----GSLDRAVRV--WDSETGF 238 (388)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSS-CEEEEEECSTTCCEEEE-----EETTSCEEE--EETTTCC
T ss_pred cccccc-ccccccccccceeeeeeecccccccccccccc-ccccccccCCCCCeEEE-----EcCCCeEEE--eecccCc
Confidence 689999 999998888 9999999999776654443333 34444444 46778887 556665444 4433222
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.+.. +.. ......+|...|.+++|+|++++|++
T Consensus 239 ~~~~------------------------------------------~~~-----~~~~~~~h~~~v~~l~~s~~~~~l~s 271 (388)
T d1erja_ 239 LVER------------------------------------------LDS-----ENESGTGHKDSVYSVVFTRDGQSVVS 271 (388)
T ss_dssp EEEE------------------------------------------EC-----------CCCSSCEEEEEECTTSSEEEE
T ss_pred ccee------------------------------------------ecc-----ccccccCCCCCEEEEEECCCCCEEEE
Confidence 1110 000 00123468899999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccccCc--------eeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGR--------VSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~--------~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
++.|+ .|++|++.+...... +......+...+.+++|+|+|++|++++. ||.|++||+.+++++.+
T Consensus 272 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~---dg~i~vwd~~~~~~~~~ 345 (388)
T d1erja_ 272 GSLDR---SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK---DRGVLFWDKKSGNPLLM 345 (388)
T ss_dssp EETTS---EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET---TSEEEEEETTTCCEEEE
T ss_pred EECCC---cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC---CCEEEEEECCCCcEEEE
Confidence 99999 999999976432111 11112222346899999999999999998 99999999999988765
Q ss_pred --ccccceeeEE------ECCCCCEEEEEEccceeccccEEEEEec
Q 005140 553 --AEHFMATDVE------WDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 553 --~~~~~v~~~~------~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.|...|++++ |+|+|.+||+++. |+.|+||++.
T Consensus 346 l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~-----Dg~I~iW~~~ 386 (388)
T d1erja_ 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSG-----DCKARIWKYK 386 (388)
T ss_dssp EECCSSCEEEEEECSSCTTCTTCEEEEEEET-----TSEEEEEEEE
T ss_pred EeCCCCCEEEEEEecCcccCCCCCEEEEEeC-----CCEEEEEeee
Confidence 6778888876 5679999999999 9999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.3e-32 Score=275.01 Aligned_cols=303 Identities=16% Similarity=0.214 Sum_probs=236.4
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
......|++|...|++++|||+|++|||++.|+ |+|||+. +++.+..+. |. .|.+++|+|++.+++++..+
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~----- 80 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLASCSAD----- 80 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCEEEEEeCCCCcEEEEeeecccccccccccc-----
Confidence 334457899999999999999999999999999 8899999 777777664 33 49999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
+.+.+|+.........+..+..... ++.|++ ++.++++++ |+.+.+|++.++..+.....
T Consensus 81 -----~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 141 (317)
T d1vyhc1 81 -----MTIKLWDFQGFECIRTMHGHDHNVS-------------SVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141 (317)
T ss_dssp -----SCCCEEETTSSCEEECCCCCSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -----cccccccccccccccccccccccce-------------eeeccC-CCceEEeeccCcceeEeecccceeeeEEcc
Confidence 8899999988888888887766653 689999 999999988 99999999999887777767
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
+...+.+++|+|++.+|++ ++.++.++ +|+......+.....+......+.|+|++..+..
T Consensus 142 ~~~~~~~~~~~~~~~~l~~-----~~~d~~v~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------ 202 (317)
T d1vyhc1 142 HREWVRMVRPNQDGTLIAS-----CSNDQTVR--VWVVATKECKAELREHRHVVECISWAPESSYSSI------------ 202 (317)
T ss_dssp CSSCEEEEEECTTSSEEEE-----EETTSCEE--EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG------------
T ss_pred CCCcceeeecccCCCEEEE-----EeCCCeEE--EEeeccceeeEEEecCCCCceEEEEeecccccee------------
Confidence 7788999999999999998 66666655 4555554444333333333334455554432111
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--cee
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QAN 516 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~ 516 (712)
..........+...+..+++++.|+ .|++|++.++. .+..+.++ .+.
T Consensus 203 ----------------------~~~~~~~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~------~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 203 ----------------------SEATGSETKKSGKPGPFLLSGSRDK---TIKMWDVSTGM------CLMTLVGHDNWVR 251 (317)
T ss_dssp ----------------------GGCCSCC-------CCEEEEEETTS---EEEEEETTTTE------EEEEEECCSSCEE
T ss_pred ----------------------eccccceeeeeccCCceeEeccCCC---EEEEEECCCCc------EEEEEeCCCCCEE
Confidence 0011222233445678899999999 99999997654 55555544 789
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+++|+|+|++|++++. ||.|++||+.+++++.. .|...|++++|+|+|++|++++. |+.|+||+
T Consensus 252 ~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~-----Dg~i~iWd 317 (317)
T d1vyhc1 252 GVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-----DQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEEEET---TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET-----TSEEEEEC
T ss_pred EEEECCCCCEEEEEEC---CCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----CCeEEEeC
Confidence 9999999999999998 99999999999888765 57789999999999999999999 99999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-31 Score=267.22 Aligned_cols=273 Identities=17% Similarity=0.235 Sum_probs=213.3
Q ss_pred CcccceEEEcCCCcEEEEEecCceEEeecccCcceeeee-cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY-AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~-~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
.....+++++|+|+.||++..+.+.+|++. +......+ .| ..|.+++|||+|++||+|+.| ++|+||
T Consensus 17 r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~-~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d----------g~i~iw 85 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH----------GNVRIW 85 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEECCCSSCEEEEEECTTSSEEEEEETT----------SEEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCEEEEEECC-CCceeEEEcCCCCCEEEEEEeCCCCeEeccccC----------ceEeee
Confidence 345668999999999999988889999998 66555544 34 459999999999999999999 999999
Q ss_pred EccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeee
Q 005140 291 DVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMD 365 (712)
Q Consensus 291 d~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~ 365 (712)
|+.++..+ ..+..|...+. +++|+| ++++|++++ +..++||++.+++.......|...|.+
T Consensus 86 d~~~~~~~~~~~~~~~~~~v~-------------~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 86 DTTQTTHILKTTIPVFSGPVK-------------DISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp ESSSTTCCEEEEEECSSSCEE-------------EEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred eeeccccccccccccccCccc-------------cccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 99887643 45667766553 799999 999999887 456999999988887777778888999
Q ss_pred EEECCCCCe-EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 366 FSWSPTDPI-ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 366 ~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
++|+|++.+ |++ ++.++.+++| +..+.+
T Consensus 152 v~~~~~~~~~l~s-----gs~d~~i~i~--d~~~~~-------------------------------------------- 180 (311)
T d1nr0a1 152 VDFKPSRPFRIIS-----GSDDNTVAIF--EGPPFK-------------------------------------------- 180 (311)
T ss_dssp EEECSSSSCEEEE-----EETTSCEEEE--ETTTBE--------------------------------------------
T ss_pred ccccccceeeecc-----cccccccccc--cccccc--------------------------------------------
Confidence 999999886 554 5566655543 332211
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------CCce
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------GKQA 515 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~~~v 515 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++|++.++. .+..+. ...|
T Consensus 181 ----------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~---~v~~~d~~~~~------~~~~~~~~~~~~~~h~~~V 241 (311)
T d1nr0a1 181 ----------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDG---TIVLYNGVDGT------KTGVFEDDSLKNVAHSGSV 241 (311)
T ss_dssp ----------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCC------EEEECBCTTSSSCSSSSCE
T ss_pred ----------cccccccccccccccccCccccccccccccc---ccccccccccc------ccccccccccccccccccc
Confidence 0022346788999999999999999999999 99999997654 333332 2368
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc--c---cceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE--H---FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~--~---~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++++|+|+|++|++++. ||.|+|||+.+++++.+.. . ..+.++.| ++.+|++++. ||.|++||.+
T Consensus 242 ~~~~~s~~~~~l~tgs~---Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~-----dG~i~~wd~d 311 (311)
T d1nr0a1 242 FGLTWSPDGTKIASASA---DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA-----NGFINFVNPE 311 (311)
T ss_dssp EEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET-----TCCEEEEETT
T ss_pred cccccCCCCCEEEEEeC---CCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEEC-----CCEEEEEeCC
Confidence 99999999999999998 9999999999998877532 1 23344555 4567999999 9999999963
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-31 Score=272.00 Aligned_cols=305 Identities=11% Similarity=0.139 Sum_probs=227.7
Q ss_pred ceEEEcCCCcEEEEEecCceEE-eecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 217 SFVQWSPLGTYLATVHRQGAAV-WGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~i~i-w~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
.++..+++|++..........+ =.+....+.+..+.|.. |.+++|||+|++|++|+ + +.|+|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~H~~~V~~v~fs~~g~~latg~-d----------g~V~iWd~~~ 81 (337)
T d1gxra_ 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K----------GCVKVWDISH 81 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B----------SEEEEEETTS
T ss_pred ccccCCCCCCEEeeccCCcceecCCCCCCceEEEECCCCCcEEEEEECCCCCEEEEEE-C----------CEEEEEEccC
Confidence 3466777777655544333221 11121445666777775 99999999999999987 7 7899999976
Q ss_pred Cceee-----eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeE
Q 005140 295 GKVMR-----DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDF 366 (712)
Q Consensus 295 g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~ 366 (712)
+.... ...+|...+. +++|+| ++++|++++ |+.|++|++.... .......+...+..+
T Consensus 82 ~~~~~~~~~~~~~~h~~~I~-------------~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 147 (337)
T d1gxra_ 82 PGNKSPVSQLDCLNRDNYIR-------------SCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEE-------------EEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred CcccceeEEeeecCCCCcEE-------------EEEEcC-CCCEEEEeeccccccccccccccccccccccccccccccc
Confidence 64322 2334544442 799999 999999998 9999999987443 333334455668888
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEE
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 446 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 446 (712)
+|+|++.++++ ++.+..+.+| ++.+.+
T Consensus 148 ~~~~~~~~l~s-----~~~d~~i~~~--~~~~~~---------------------------------------------- 174 (337)
T d1gxra_ 148 AISPDSKVCFS-----CCSDGNIAVW--DLHNQT---------------------------------------------- 174 (337)
T ss_dssp EECTTSSEEEE-----EETTSCEEEE--ETTTTE----------------------------------------------
T ss_pred ccccccccccc-----cccccccccc--cccccc----------------------------------------------
Confidence 88888888877 4445444332 221110
Q ss_pred EecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC
Q 005140 447 IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR 525 (712)
Q Consensus 447 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~ 525 (712)
......+|...|.+++|+|++.++++++.++ .+++||++++. .+..+. ...+.+++|+|+++
T Consensus 175 --------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~---~v~i~d~~~~~------~~~~~~~~~~i~~l~~~~~~~ 237 (337)
T d1gxra_ 175 --------LVRQFQGHTDGASCIDISNDGTKLWTGGLDN---TVRSWDLREGR------QLQQHDFTSQIFSLGYCPTGE 237 (337)
T ss_dssp --------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTE------EEEEEECSSCEEEEEECTTSS
T ss_pred --------ccccccccccccccccccccccccccccccc---cccccccccce------eecccccccceEEEEEccccc
Confidence 0122336788999999999999999999999 99999997654 344443 45789999999999
Q ss_pred eEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee-cccce
Q 005140 526 FIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT-LKDHF 602 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~-~~~~i 602 (712)
+|++++. ++.+++||+.+.+.... .|...|++++|+|+|++|++++. |+.|++|++. +..+... +...|
T Consensus 238 ~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~-----Dg~i~iwd~~~~~~~~~~~~~~~v 309 (337)
T d1gxra_ 238 WLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-----DNLLNAWRTPYGASIFQSKESSSV 309 (337)
T ss_dssp EEEEEET---TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECSSCE
T ss_pred ccceecc---ccccccccccccccccccccccccceEEECCCCCEEEEEeC-----CCeEEEEECCCCCEEEEccCCCCE
Confidence 9999998 99999999998777654 66788999999999999999999 9999999987 5554443 66889
Q ss_pred eeeEEecCCCCCCChhhHHHHH
Q 005140 603 FQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 603 ~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+++|+|++++|++++.|+.|+
T Consensus 310 ~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 310 LSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp EEEEECTTSCEEEEEETTSCEE
T ss_pred EEEEEeCCCCEEEEEeCCCeEE
Confidence 9999999999999999887664
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=5e-30 Score=259.34 Aligned_cols=278 Identities=14% Similarity=0.216 Sum_probs=211.8
Q ss_pred ccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee--eee-
Q 005140 176 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL--MRY- 251 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~--~~~- 251 (712)
..+|+|.. ++... ++.+++|+. ........+.+|...|++++|||+|++||+|+.++ |+||+.. +.... ..+
T Consensus 24 a~~~~g~~-l~~~~-~~~v~i~~~-~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~-~~~~~~~~~~~ 99 (311)
T d1nr0a1 24 GNTPAGDK-IQYCN-GTSVYTVPV-GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT-QTTHILKTTIP 99 (311)
T ss_dssp EECTTSSE-EEEEE-TTEEEEEET-TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS-STTCCEEEEEE
T ss_pred EEcCCCCE-EEEEe-CCEEEEEEC-CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeee-ccccccccccc
Confidence 45666663 44444 445779998 46667778899999999999999999999999999 8899998 44322 223
Q ss_pred -cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 -AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 -~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
+...|.+++|+|++++|++++.+. ...++||++.+++.+..+.+|...+. +++|+| +
T Consensus 100 ~~~~~v~~v~~s~d~~~l~~~~~~~--------~~~~~v~~~~~~~~~~~l~~h~~~v~-------------~v~~~~-~ 157 (311)
T d1nr0a1 100 VFSGPVKDISWDSESKRIAAVGEGR--------ERFGHVFLFDTGTSNGNLTGQARAMN-------------SVDFKP-S 157 (311)
T ss_dssp CSSSCEEEEEECTTSCEEEEEECCS--------SCSEEEEETTTCCBCBCCCCCSSCEE-------------EEEECS-S
T ss_pred cccCccccccccccccccccccccc--------cccccccccccccccccccccccccc-------------cccccc-c
Confidence 334599999999999999998651 14588999999999999998877663 689999 9
Q ss_pred CCE-EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee
Q 005140 331 DKY-FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 408 (712)
Q Consensus 331 g~~-la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (712)
+++ |++++ |+.|++||+.+++.......|...|.++.|+|++++|++ ++.++.+++|. ......+..
T Consensus 158 ~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~-----~~~d~~v~~~d--~~~~~~~~~---- 226 (311)
T d1nr0a1 158 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS-----TGGDGTIVLYN--GVDGTKTGV---- 226 (311)
T ss_dssp SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCCEEEE----
T ss_pred ceeeecccccccccccccccccccccccccccccccccccCcccccccc-----ccccccccccc--ccccccccc----
Confidence 986 67777 999999999998887777677788999999999999998 66677666543 322211100
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
+.... ....+|.+.|.+++|+|++++|++++.|+
T Consensus 227 --------------------------------------~~~~~-----~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg--- 260 (311)
T d1nr0a1 227 --------------------------------------FEDDS-----LKNVAHSGSVFGLTWSPDGTKIASASADK--- 260 (311)
T ss_dssp --------------------------------------CBCTT-----SSSCSSSSCEEEEEECTTSSEEEEEETTS---
T ss_pred --------------------------------------ccccc-----cccccccccccccccCCCCCEEEEEeCCC---
Confidence 00000 11237889999999999999999999999
Q ss_pred eEEEEEeecccccCceeEEEEeCCC---ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|+|||++++. .+.++..+ ....+.+.+++.+|++++. ||.|++||.+
T Consensus 261 ~v~iwd~~t~~------~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~---dG~i~~wd~d 311 (311)
T d1nr0a1 261 TIKIWNVATLK------VEKTIPVGTRIEDQQLGIIWTKQALVSISA---NGFINFVNPE 311 (311)
T ss_dssp EEEEEETTTTE------EEEEEECCSSGGGCEEEEEECSSCEEEEET---TCCEEEEETT
T ss_pred eEEEEECCCCc------EEEEEECCCCccceEEEEEecCCEEEEEEC---CCEEEEEeCC
Confidence 99999997654 55555433 2344556666778999988 9999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.2e-29 Score=259.55 Aligned_cols=280 Identities=16% Similarity=0.265 Sum_probs=211.7
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
...|++|...|++++|||+|++||||+.|| |+|||.. ++..+..+. |. .|.+++|+|++++|++++.+
T Consensus 48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------- 118 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-------- 118 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTEEEEEEECSCSCEEEEEECTTSSEEEEEETT--------
T ss_pred eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecc-cceeEEEEecccccEEeeEeeccceeeeeeccc--------
Confidence 346789999999999999999999999999 8899999 777777664 34 49999999999999999999
Q ss_pred CccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc
Q 005140 283 NRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 283 ~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~ 358 (712)
+.+++|+..... ....+.+|..... ...+.. +........+.....+.............
T Consensus 119 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 119 --NICSIYNLKTREGNVRVSRELAGHTGYLS-------------CCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp --CCEEEEESSSSCSCCCEEEEECCCSSCEE-------------EEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred --ceeecccccccccccccceeccccccccc-------------cccccc-ccccccccccccccccccccccccccccc
Confidence 899999975543 3445555544331 233333 33333344488888888775554443434
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
....+....+.+.+.++++ ++.++.+++ |++.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~-----~~~d~~v~i--~d~~~~~-------------------------------------- 217 (340)
T d1tbga_ 183 HTGDVMSLSLAPDTRLFVS-----GACDASAKL--WDVREGM-------------------------------------- 217 (340)
T ss_dssp CSSCEEEEEECTTSSEEEE-----EETTTEEEE--EETTTTE--------------------------------------
T ss_pred cceeEeeeccccccceeEE-----eecCceEEE--EECCCCc--------------------------------------
Confidence 4455667777777776666 334443333 2322111
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----CCc
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQ 514 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~ 514 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++|++.... .+..+. ...
T Consensus 218 ----------------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~---~i~~~~~~~~~------~~~~~~~~~~~~~ 272 (340)
T d1tbga_ 218 ----------------CRQTFTGHESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQ------ELMTYSHDNIICG 272 (340)
T ss_dssp ----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE------EEEEECCTTCCSC
T ss_pred ----------------EEEEEeCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeecccc------cccccccccccCc
Confidence 1133557889999999999999999999999 99999996544 333322 236
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+.+++|+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.|+|||
T Consensus 273 i~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~-----Dg~v~iWd 340 (340)
T d1tbga_ 273 ITSVSFSKSGRLLLAGYD---DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-----DSFLKIWN 340 (340)
T ss_dssp EEEEEECSSSCEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-----TSCEEEEC
T ss_pred eEEEEECCCCCEEEEEEC---CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc-----CCEEEEeC
Confidence 899999999999999998 99999999999888775 57789999999999999999999 99999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.9e-29 Score=262.28 Aligned_cols=285 Identities=11% Similarity=0.187 Sum_probs=219.5
Q ss_pred eecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 250 RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 250 ~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
.|..+.|+|++|||||++||+++.+ +.|+|||+.+++ .+..+.+|...+. +++|+
T Consensus 4 ~~~~~pIt~~~~s~dg~~la~~~~~----------~~i~iw~~~~~~~~~~~~l~gH~~~V~-------------~l~fs 60 (371)
T d1k8kc_ 4 SFLVEPISCHAWNKDRTQIAICPNN----------HEVHIYEKSGNKWVQVHELKEHNGQVT-------------GVDWA 60 (371)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSS----------SEEEEEEEETTEEEEEEEEECCSSCEE-------------EEEEE
T ss_pred CCCCCCeEEEEECCCCCEEEEEeCC----------CEEEEEECCCCCEEEEEEecCCCCCEE-------------EEEEC
Confidence 4445669999999999999999999 999999998775 5677888887764 79999
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceeccc--ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee-
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDK--KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR- 403 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~- 403 (712)
| ++++|++++ |++|+||++.++..... ...+...|.+++|+|+++.|++ ++.++.+++|.++........
T Consensus 61 p-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~-----~s~d~~i~i~~~~~~~~~~~~~ 134 (371)
T d1k8kc_ 61 P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV-----GSGSRVISICYFEQENDWWVCK 134 (371)
T ss_dssp T-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE-----EETTSSEEEEEEETTTTEEEEE
T ss_pred C-CCCEEEEEECCCeEEEEeeccccccccccccccccccccccccccccccee-----ecccCcceeeeeeccccccccc
Confidence 9 999999998 99999999987654332 2345667999999999999998 778999999988876543222
Q ss_pred -eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc---------------ceeEEEecCCCCceE
Q 005140 404 -QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI---------------PIEVLELDNKNDKII 467 (712)
Q Consensus 404 -~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~~~~~~l~~h~~~v~ 467 (712)
....+......+.|+|+|.+|++++.++. +.+|++..... ........+|...|.
T Consensus 135 ~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~---------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 205 (371)
T d1k8kc_ 135 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFK---------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 205 (371)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSC---------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred ccccccccccccccccccccceeccccCcE---------EEEEeeccCccccccccccccccccceeeeeeccCccCcEE
Confidence 12223445667899999999999998877 78887653211 112345567889999
Q ss_pred EEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 468 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+++|+|+|++|++++.|+ .|++||+.++. .+..+. ..++.+++|+|+|++|++|. |+.+.+|..+
T Consensus 206 ~~~~s~~g~~l~s~~~d~---~i~iwd~~~~~------~~~~~~~~~~~v~s~~fs~d~~~la~g~----d~~~~~~~~~ 272 (371)
T d1k8kc_ 206 GVCFSANGSRVAWVSHDS---TVCLADADKKM------AVATLASETLPLLAVTFITESSLVAAGH----DCFPVLFTYD 272 (371)
T ss_dssp EEEECSSSSEEEEEETTT---EEEEEEGGGTT------EEEEEECSSCCEEEEEEEETTEEEEEET----TSSCEEEEEE
T ss_pred EEEeecccccccccccCC---cceEEeeeccc------ceeeeecccccceeeeecCCCCEEEEEc----CCceEEEEee
Confidence 999999999999999999 99999997654 444444 34799999999998887654 6666665432
Q ss_pred --ccee-----------------------------------------eeeccccceeeEEECCCC----CEEEEEEccce
Q 005140 546 --ELET-----------------------------------------MATAEHFMATDVEWDPTG----RYVATAVTSVH 578 (712)
Q Consensus 546 --~~~~-----------------------------------------~~~~~~~~v~~~~~spdg----~~l~t~s~~~~ 578 (712)
.... +...|...|+++++.|.+ ..|+|++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~--- 349 (371)
T d1k8kc_ 273 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM--- 349 (371)
T ss_dssp TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET---
T ss_pred CCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcC---
Confidence 1110 001366788999997755 35889999
Q ss_pred eccccEEEEEec
Q 005140 579 EMENGFNIWSFN 590 (712)
Q Consensus 579 ~~d~~v~iw~~~ 590 (712)
|+.|+||+++
T Consensus 350 --Dg~v~iW~~~ 359 (371)
T d1k8kc_ 350 --DGGMSIWDVR 359 (371)
T ss_dssp --TSEEEEEEHH
T ss_pred --CCeEEEEeCC
Confidence 9999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.1e-28 Score=248.07 Aligned_cols=282 Identities=13% Similarity=0.179 Sum_probs=207.8
Q ss_pred eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEE
Q 005140 247 RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 247 ~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
++...|...|++++|||+|++|+||+.| ++|++||+.+++.++.+. .|...+. +++
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~D----------g~v~vWd~~~~~~~~~~~~~h~~~v~-------------~v~ 62 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAE----------GHINSWDISTGISNRVFPDVHATMIT-------------GIK 62 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTTCCEEECSSCSCSSCEE-------------EEE
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCC----------CeEEEEECCCCcEEEEEcCCCCCcEE-------------EEE
Confidence 3344444569999999999999999999 999999999999998885 4555442 799
Q ss_pred ecCCCCCEEEEecCCeEEEEEcCCceecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 326 WGGGKDKYFAKLGKNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 326 ~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
|+| ++++++++.|+.+++|+.......... ..+...+.+++|+|++..++. + .++ .+.+|+.......
T Consensus 63 ~~~-~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~-----~-~~~--~i~~~~~~~~~~~ 133 (299)
T d1nr0a2 63 TTS-KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA-----A-CYK--HIAIYSHGKLTEV 133 (299)
T ss_dssp ECT-TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE-----E-ESS--EEEEEETTEEEEE
T ss_pred eec-cceeecccceeeEEEeccCCccccccccccccccccccccccccccccccc-----c-ccc--ccccccccccccc
Confidence 999 999888888999999998754322111 123445889999999998876 2 233 3455553321111
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
........+.|+|++++|+++..++. +.+|++..... .......|...|.+++|+|++++|++++
T Consensus 134 ----~~~~~~~~~~~s~~~~~l~~g~~dg~---------i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 198 (299)
T d1nr0a2 134 ----PISYNSSCVALSNDKQFVAVGGQDSK---------VHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGAFLVATD 198 (299)
T ss_dssp ----ECSSCEEEEEECTTSCEEEEEETTSE---------EEEEEEETTEE--EEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ----cccccccccccccccccccccccccc---------ccccccccccc--cccccccccccccccccccccccccccc
Confidence 11223345689999999999998877 88999875432 2234447899999999999999999999
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee----eccc-
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA----TAEH- 555 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~----~~~~- 555 (712)
.++ .|++|++.++.. ......+. ...+++++|+|+|++|++++. ||.|++||+.++.... ..++
T Consensus 199 ~d~---~i~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~~~~~~ 269 (299)
T d1nr0a2 199 QSR---KVIPYSVANNFE---LAHTNSWTFHTAKVACVSWSPDNVRLATGSL---DNSVIVWNMNKPSDHPIIIKGAHAM 269 (299)
T ss_dssp TTS---CEEEEEGGGTTE---ESCCCCCCCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTCTTSCCEEETTSSTT
T ss_pred ccc---cccccccccccc---ccccccccccccccccccccccccceEEEcC---CCEEEEEECCCCCcceEEEecCCCC
Confidence 999 899999976432 11222233 337899999999999999998 9999999998654321 2333
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
..+..+.| +++++|++++. |+.|+|||+.
T Consensus 270 ~~v~~~~~-~~~~~l~s~s~-----D~~i~iWdl~ 298 (299)
T d1nr0a2 270 SSVNSVIW-LNETTIVSAGQ-----DSNIKFWNVP 298 (299)
T ss_dssp SCEEEEEE-EETTEEEEEET-----TSCEEEEECC
T ss_pred CcEEEEEE-CCCCEEEEEeC-----CCEEEEEecc
Confidence 44555554 66789999999 9999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=5e-29 Score=250.53 Aligned_cols=284 Identities=14% Similarity=0.165 Sum_probs=207.2
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
....++||...|++++|||||++|||++.|+ |+|||+. +++.+..+. |. .|.+++|+|+|++++ ++.+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~d------ 75 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS-TGISNRVFPDVHATMITGIKTTSKGDLFT-VSWD------ 75 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEECSSCSCSSCEEEEEECTTSCEEE-EETT------
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCCcEEEEEeeccceeec-ccce------
Confidence 3457899999999999999999999999999 8899998 777666653 44 499999999998654 5556
Q ss_pred CCCccEEEEEEccCCceeeeccC----CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKG----SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK 356 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~ 356 (712)
+.+++|++..... ..... +...+ ..+.|++ ++++++++.++.+.+|+.......
T Consensus 76 ----~~v~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~s~-~g~~~~~~~~~~i~~~~~~~~~~~--- 133 (299)
T d1nr0a2 76 ----DHLKVVPAGGSGV-DSSKAVANKLSSQP-------------LGLAVSA-DGDIAVAACYKHIAIYSHGKLTEV--- 133 (299)
T ss_dssp ----TEEEEECSSSSSS-CTTSCCEEECSSCE-------------EEEEECT-TSSCEEEEESSEEEEEETTEEEEE---
T ss_pred ----eeEEEeccCCccc-cccccccccccccc-------------ccccccc-cccccccccccccccccccccccc---
Confidence 6899999754321 11111 11111 1589999 999999888999999986533221
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
.....+.+++|+|++++|++ ++.++.+++|.+.......+. ...+......+.|+|++.+|++++.++.
T Consensus 134 -~~~~~~~~~~~s~~~~~l~~-----g~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~---- 202 (299)
T d1nr0a2 134 -PISYNSSCVALSNDKQFVAV-----GGQDSKVHVYKLSGASVSEVK-TIVHPAEITSVAFSNNGAFLVATDQSRK---- 202 (299)
T ss_dssp -ECSSCEEEEEECTTSCEEEE-----EETTSEEEEEEEETTEEEEEE-EEECSSCEEEEEECTTSSEEEEEETTSC----
T ss_pred -cccccccccccccccccccc-----ccccccccccccccccccccc-cccccccccccccccccccccccccccc----
Confidence 22345788999999999998 667776666555433222111 1223445667899999999999988876
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC---
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--- 513 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--- 513 (712)
+.+|++...........+.+|...|.+++|+|++++|++++.|+ .|++||+.++... .+.....+
T Consensus 203 -----i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg---~i~iwd~~~~~~~----~~~~~~~~~~~ 270 (299)
T d1nr0a2 203 -----VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN---SVIVWNMNKPSDH----PIIIKGAHAMS 270 (299)
T ss_dssp -----EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTCTTSC----CEEETTSSTTS
T ss_pred -----cccccccccccccccccccccccccccccccccccceEEEcCCC---EEEEEECCCCCcc----eEEEecCCCCC
Confidence 78888765443333344667899999999999999999999999 9999999765432 22222222
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.++++.| +++++|++++. ||.|++||+.
T Consensus 271 ~v~~~~~-~~~~~l~s~s~---D~~i~iWdl~ 298 (299)
T d1nr0a2 271 SVNSVIW-LNETTIVSAGQ---DSNIKFWNVP 298 (299)
T ss_dssp CEEEEEE-EETTEEEEEET---TSCEEEEECC
T ss_pred cEEEEEE-CCCCEEEEEeC---CCEEEEEecc
Confidence 4555654 66789999988 9999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.1e-28 Score=248.83 Aligned_cols=307 Identities=14% Similarity=0.244 Sum_probs=239.5
Q ss_pred CCCCCCCCCCC---CCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec
Q 005140 157 EWAPPEHKPYT---PGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR 233 (712)
Q Consensus 157 ~~~~p~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~ 233 (712)
+|.|.++..+. ....+.+..++|+++ .++..+.|+++.+|+. ..++....+++|...|.+++|+|+|.+++++..
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~-~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEC-CCCCEEEEEeCCCCcEEEEeeeccccccccccc
Confidence 46554443332 233466677788765 5666778899999999 577888889999999999999999999999999
Q ss_pred Cc-eEEeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 234 QG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 234 ~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
++ +.+|+.. .......+ .|. .+.++.|+|++.+|++++.+ +.+++||+.+++.+..+.+|.....
T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------~~~~~~~~~~~~~~~~~~~~~~~~~- 147 (317)
T d1vyhc1 80 DMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD----------KTIKMWEVQTGYCVKTFTGHREWVR- 147 (317)
T ss_dssp TSCCCEEETT-SSCEEECCCCCSSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTCCEEEEEECCSSCEE-
T ss_pred cccccccccc-ccccccccccccccceeeeccCCCceEEeeccC----------cceeEeecccceeeeEEccCCCcce-
Confidence 88 6688887 55544444 333 49999999999999999999 9999999999999999988876653
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCe
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 389 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 389 (712)
+++|++ ++.+|++++ |+.|++|++.++..+.....+...+.+++|+|++..+.. .......
T Consensus 148 ------------~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~ 209 (317)
T d1vyhc1 148 ------------MVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI-----SEATGSE 209 (317)
T ss_dssp ------------EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG-----GGCCSCC
T ss_pred ------------eeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeecccccee-----eccccce
Confidence 689999 999999998 999999999988877666667778999999998765543 1111111
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 469 (712)
.......+.++++++.++. +.+|++... .....+.+|...|.++
T Consensus 210 ------------------------~~~~~~~~~~~~~~~~d~~---------i~~~~~~~~---~~~~~~~~~~~~v~~~ 253 (317)
T d1vyhc1 210 ------------------------TKKSGKPGPFLLSGSRDKT---------IKMWDVSTG---MCLMTLVGHDNWVRGV 253 (317)
T ss_dssp -------------------------------CCEEEEEETTSE---------EEEEETTTT---EEEEEEECCSSCEEEE
T ss_pred ------------------------eeeeccCCceeEeccCCCE---------EEEEECCCC---cEEEEEeCCCCCEEEE
Confidence 1123556778888888766 678876532 2234566899999999
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
+|+|++++|++++.|+ .|++||+.++. ++..+.+ ..|++++|+|+|++|++++. ||.|+|||
T Consensus 254 ~~~~~~~~l~s~~~dg---~i~iwd~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~s~s~---Dg~i~iWd 317 (317)
T d1vyhc1 254 LFHSGGKFILSCADDK---TLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYVVTGSV---DQTVKVWE 317 (317)
T ss_dssp EECSSSSCEEEEETTT---EEEEECCTTSC------CCEEEECCSSCEEEEEECSSSSCEEEEET---TSEEEEEC
T ss_pred EECCCCCEEEEEECCC---eEEEEECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEeC
Confidence 9999999999999999 99999997654 4455544 47999999999999999998 99999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.8e-28 Score=248.49 Aligned_cols=318 Identities=11% Similarity=0.102 Sum_probs=227.3
Q ss_pred cccccCCCccc-ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 206 EPVYKRSYWTE-SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 206 ~~~~~~~~~~v-~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
...+++|...| +|++ ++|++||||+.|+ |+|||.. +++.+.++. |. .|.+++|+|+ .+|++++.|
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~-~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D------- 73 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTD------- 73 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETT-TTEEEEEEECCSSCEEEEEEETT-TEEEEEETT-------
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECC-CCcEEEEEECCCCCEEEEEEcCC-CEEEEEecc-------
Confidence 34678998876 5554 5689999999999 8899999 888887774 54 4999999996 589999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
++|++|++..+.............. .....+++ ++.++++++ |+.|++|++.+...+.......
T Consensus 74 ---~~i~iw~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~ 138 (355)
T d1nexb2 74 ---RTVRVWDIKKGCCTHVFEGHNSTVR-----------CLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138 (355)
T ss_dssp ---CCEEEEETTTTEEEEEECCCSSCEE-----------EEEEEEET-TEEEEEEEETTSEEEEEECCC-----------
T ss_pred ---ccccccccccccccccccccccccc-----------cccccccc-ccceeeeecCCCcEEEEEccCCceeccccccc
Confidence 9999999988887666554433221 01466788 899999988 9999999998655332111000
Q ss_pred ---------------------cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 361 ---------------------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 361 ---------------------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
.......+.+++++++. +..++. +..|++.+.+.+............+.|++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (355)
T d1nexb2 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS-----GSYDNT--LIVWDVAQMKCLYILSGHTDRIYSTIYDH 211 (355)
T ss_dssp CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE-----EETTSC--EEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred eeccceeccccccceeeeeeeccccccccccccceeee-----ecccce--eeeeecccccceeeeeccccccccccccc
Confidence 00112344556777777 445554 55567766666555554555566778999
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
++.+++++..++. +.+|++.... ....+.+|...|.+++|+ +++|++++.|+ .|++||+.+..
T Consensus 212 ~~~~~~~~~~d~~---------i~i~d~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg---~i~iwd~~~~~ 274 (355)
T d1nexb2 212 ERKRCISASMDTT---------IRIWDLENGE---LMYTLQGHTALVGLLRLS--DKFLVSAAADG---SIRGWDANDYS 274 (355)
T ss_dssp TTTEEEEEETTSC---------EEEEETTTCC---EEEEECCCSSCCCEEEEC--SSEEEEECTTS---EEEEEETTTCC
T ss_pred cceeeecccccce---------EEeeeccccc---cccccccccccccccccc--cceeeeeeccc---ccccccccccc
Confidence 9999999998877 7888865432 235567899999999886 57899999999 99999997543
Q ss_pred ccCceeEEEEeCCCceeE-EEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEEECCCCCEEEEEEc
Q 005140 500 HAGRVSKLTTLKGKQANA-LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 500 ~~~~~~~~~~~~~~~v~~-l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
.....+...+.+ ..++|+++++++++ ||.|++||+++++++.. .|...|++++|+|+ ..+++++.
T Consensus 275 ------~~~~~~~~~~~~~~~~~~~~~~l~~g~----d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~ 343 (355)
T d1nexb2 275 ------RKFSYHHTNLSAITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEK 343 (355)
T ss_dssp ------EEEEEECTTCCCCCEEEECSSEEEEEE----TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEES
T ss_pred ------eecccccCCceEEEEEcCCCCEEEEEe----CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEEC
Confidence 333333344444 45677887776654 89999999999988753 56688999999987 46777777
Q ss_pred cceeccccEEEEEe
Q 005140 576 SVHEMENGFNIWSF 589 (712)
Q Consensus 576 ~~~~~d~~v~iw~~ 589 (712)
||.++||-+
T Consensus 344 -----dg~~~l~~~ 352 (355)
T d1nexb2 344 -----DGQSFLEIL 352 (355)
T ss_dssp -----SSCEEEEEE
T ss_pred -----CCcEEEEEE
Confidence 898776644
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=1e-27 Score=249.02 Aligned_cols=286 Identities=15% Similarity=0.181 Sum_probs=205.8
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
..+|+|++|||||++||+++.++ |+||+.. +.+ .+..+ .|. .|.+++|||++++|++++.| ++|
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~-~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D----------~~i 75 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD----------RNA 75 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEE-TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT----------SCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECC-CCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC----------CeE
Confidence 36799999999999999999998 8899997 443 44444 354 59999999999999999999 999
Q ss_pred EEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec----ccccccc
Q 005140 288 NIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI----DKKSLKV 360 (712)
Q Consensus 288 ~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~----~~~~~~~ 360 (712)
+|||+.++... ..+.+|...+. +++|+| ++++|++++ ++.|++|++...... .....+.
T Consensus 76 ~vWd~~~~~~~~~~~~~~~~~~v~-------------~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~ 141 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVILRINRAAR-------------CVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 141 (371)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEE-------------EEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEeeccccccccccccccccccc-------------cccccc-ccccceeecccCcceeeeeecccccccccccccccc
Confidence 99999877643 34455555443 799999 999999998 999999998754321 1122345
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc----------------ceeeeeeeeecceeEEECcCCCEE
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE----------------ELRQKNLFSVSDCKMYWQSSGDYL 424 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~~~~~~s~~g~~l 424 (712)
..|.+++|+|++++|++ ++.|+.+++|........ .+.....+......+.|+|+|++|
T Consensus 142 ~~v~~v~~~p~~~~l~s-----~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 216 (371)
T d1k8kc_ 142 STVLSLDWHPNSVLLAA-----GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216 (371)
T ss_dssp SCEEEEEECTTSSEEEE-----EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred cccccccccccccceec-----cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc
Confidence 67999999999999998 778888887765433211 111222233445678899999999
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 425 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
++++.++. +.+|++.... ....+..|..+|.+++|+|++++|++++ |+ .+.+|..+........
T Consensus 217 ~s~~~d~~---------i~iwd~~~~~---~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~---~~~~~~~~~~~~~~~~ 280 (371)
T d1k8kc_ 217 AWVSHDST---------VCLADADKKM---AVATLASETLPLLAVTFITESSLVAAGH-DC---FPVLFTYDSAAGKLSF 280 (371)
T ss_dssp EEEETTTE---------EEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEET-TS---SCEEEEEETTTTEEEE
T ss_pred cccccCCc---------ceEEeeeccc---ceeeeecccccceeeeecCCCCEEEEEc-CC---ceEEEEeeCCCceEEE
Confidence 99998877 8899886532 2345667899999999999998887654 55 4556554432110000
Q ss_pred ----------------------------------eEEEE---eCCCceeEEEEccCCC----eEEEEeccCCCceEEEEE
Q 005140 505 ----------------------------------SKLTT---LKGKQANALFWSPSGR----FIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 505 ----------------------------------~~~~~---~~~~~v~~l~~spdg~----~l~~~~~~~~dg~v~iwd 543 (712)
..... .+...|+++++.|.+. .+++++. ||.|+|||
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~---Dg~v~iW~ 357 (371)
T d1k8kc_ 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM---DGGMSIWD 357 (371)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET---TSEEEEEE
T ss_pred eeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcC---CCeEEEEe
Confidence 00000 0122578899988653 5888888 99999999
Q ss_pred CCcc
Q 005140 544 VDEL 547 (712)
Q Consensus 544 ~~~~ 547 (712)
+++.
T Consensus 358 ~~~~ 361 (371)
T d1k8kc_ 358 VRSL 361 (371)
T ss_dssp HHHH
T ss_pred CCcC
Confidence 8753
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.8e-27 Score=237.62 Aligned_cols=322 Identities=12% Similarity=0.121 Sum_probs=228.9
Q ss_pred ecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcC
Q 005140 197 WNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSS 273 (712)
Q Consensus 197 w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~ 273 (712)
|+. ...++...+++|...|.+ +++++|++||||+.|+ |+|||+. +++.+..+. |. .|.+++|+|+ +|++++.
T Consensus 1 W~~-~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~ 75 (342)
T d2ovrb2 1 WRR-GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRDN--IIISGST 75 (342)
T ss_dssp HHH-SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEETT--EEEEEET
T ss_pred CCC-CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECC-CCCEEEEEeCCCCCEEEEEeCCC--cccccee
Confidence 444 456677889999998865 4777899999999999 8899999 788777773 44 4999999975 9999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~ 352 (712)
| +.+++|+............+...+ ..... .+..++.+. ++.+.+|+..++..
T Consensus 76 D----------~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~ 129 (342)
T d2ovrb2 76 D----------RTLKVWNAETGECIHTLYGHTSTV---------------RCMHL-HEKRVVSGSRDATLRVWDIETGQC 129 (342)
T ss_dssp T----------SCEEEEETTTTEEEEEECCCSSCE---------------EEEEE-ETTEEEEEETTSEEEEEESSSCCE
T ss_pred c----------ccccccccccccceecccccceeE---------------eeeec-ccccccccccceeEEEeecccccc
Confidence 9 999999987777666555544433 22223 345555555 99999999988765
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
......... ....+.+....++. ++.++.+++ |+......+.....+. .....+++++.++++++.++.
T Consensus 130 ~~~~~~~~~--~~~~~~~~~~~~~~-----~~~d~~i~~--~d~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~ 198 (342)
T d2ovrb2 130 LHVLMGHVA--AVRCVQYDGRRVVS-----GAYDFMVKV--WDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTS 198 (342)
T ss_dssp EEEEECCSS--CEEEEEECSSCEEE-----EETTSCEEE--EEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSC
T ss_pred eeeeecccc--cceeeccccceeee-----ecCCCeEEE--eecccceeeEEEcCcc--cccccccCCCCEEEEEeCCCe
Confidence 543322222 22233445566666 456666554 4544444333322222 223356778999999999877
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK- 511 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~- 511 (712)
+.+|++.... ....+.+|...+.+++++ +++|++++.|+ .|++|++.... ....+.
T Consensus 199 ---------i~~~d~~~~~---~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~---~i~iwd~~~~~------~~~~~~~ 255 (342)
T d2ovrb2 199 ---------IRVWDVETGN---CIHTLTGHQSLTSGMELK--DNILVSGNADS---TVKIWDIKTGQ------CLQTLQG 255 (342)
T ss_dssp ---------EEEEETTTCC---EEEEECCCCSCEEEEEEE--TTEEEEEETTS---CEEEEETTTCC------EEEEECS
T ss_pred ---------EEEeecccce---eeeEecccccceeEEecC--CCEEEEEcCCC---EEEEEeccccc------ccccccc
Confidence 7889876532 224566788888877664 57999999999 99999986644 333333
Q ss_pred --CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-------ccccceeeEEECCCCCEEEEEEccceeccc
Q 005140 512 --GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------AEHFMATDVEWDPTGRYVATAVTSVHEMEN 582 (712)
Q Consensus 512 --~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~ 582 (712)
.+.....+++++++++++++. ||.|++||+.+++++.. .|...|++++|+|+|.+|++|+. ||
T Consensus 256 ~~~~~~~~~~~~~~~~~~~s~s~---Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~-----dG 327 (342)
T d2ovrb2 256 PNKHQSAVTCLQFNKNFVITSSD---DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR-----NG 327 (342)
T ss_dssp TTSCSSCEEEEEECSSEEEEEET---TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS-----SS
T ss_pred cceeeeceeecccCCCeeEEEcC---CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC-----CC
Confidence 333444555666789999998 99999999999887654 34567999999999999999988 76
Q ss_pred c----EEEEEecC
Q 005140 583 G----FNIWSFNG 591 (712)
Q Consensus 583 ~----v~iw~~~g 591 (712)
+ +++||++-
T Consensus 328 t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 328 TEETKLLVLDFDV 340 (342)
T ss_dssp SSCCEEEEEECCC
T ss_pred CCeeEEEEEeCCC
Confidence 4 99999874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.4e-26 Score=241.68 Aligned_cols=286 Identities=14% Similarity=0.174 Sum_probs=209.5
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCccc------------------ccCCCcccceEEEcCCCcEEEEEe
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPV------------------YKRSYWTESFVQWSPLGTYLATVH 232 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~------------------~~~~~~~v~~v~~Spdg~~lat~~ 232 (712)
.+.+..++|+|+ +++.++++++.+|+.. .+..... ...|...|++++|||+|++||+++
T Consensus 64 ~V~~l~fs~dg~--~lasg~d~~i~iW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 64 VVCCVKFSNDGE--YLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp CCCEEEECTTSS--EEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCC--EEEEEeCCeEEEEEec-ccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 344556677775 5555678999999983 3333222 235677799999999999999999
Q ss_pred cCc-eEEeecccCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc
Q 005140 233 RQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 309 (712)
Q Consensus 233 ~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~ 309 (712)
.++ |++|+.. ..+.+.... | ..|.++.|++++..+++++.+ +.|++||..+.........+....
T Consensus 141 ~dg~v~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~- 208 (388)
T d1erja_ 141 EDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD----------RTVRIWDLRTGQCSLTLSIEDGVT- 208 (388)
T ss_dssp TTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTTEEEEEEECSSCEE-
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccccccc----------eeeeeeeccccccccccccccccc-
Confidence 999 8899998 666665553 4 459999999999999999999 999999999888877776665544
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-------cccccCeeeEEECCCCCeEEEEeec
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------SLKVENVMDFSWSPTDPIISLFVPE 381 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~la~~~~~ 381 (712)
.+.|++.++.+|++++ |+.|.+|+..++..+... ..|...|.+++|+|++++|++
T Consensus 209 -------------~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s---- 271 (388)
T d1erja_ 209 -------------TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS---- 271 (388)
T ss_dssp -------------EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE----
T ss_pred -------------cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE----
Confidence 3455443888999988 999999999877654332 234567999999999999998
Q ss_pred CCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005140 382 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 461 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 461 (712)
++.++.+++|.+ .......... .+. ..........
T Consensus 272 -~~~d~~i~iwd~--~~~~~~~~~~-----------~~~-------------------------------~~~~~~~~~~ 306 (388)
T d1erja_ 272 -GSLDRSVKLWNL--QNANNKSDSK-----------TPN-------------------------------SGTCEVTYIG 306 (388)
T ss_dssp -EETTSEEEEEEC-----------------------------------------------------------CEEEEEEC
T ss_pred -EECCCcEEEEec--cCCccccccc-----------ccc-------------------------------ccceeeeccc
Confidence 666766665543 2221110000 000 0001122346
Q ss_pred CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEE------EccCCCeEEEEecc
Q 005140 462 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALF------WSPSGRFIVLAGLK 533 (712)
Q Consensus 462 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~------~spdg~~l~~~~~~ 533 (712)
|...|.+++|+|+|++|++++.|+ .|++||+.++. ++..+.+| .|.+++ |+|+|++|++++.
T Consensus 307 ~~~~v~~~~~s~~~~~l~sg~~dg---~i~vwd~~~~~------~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~- 376 (388)
T d1erja_ 307 HKDFVLSVATTQNDEYILSGSKDR---GVLFWDKKSGN------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG- 376 (388)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTS---EEEEEETTTCC------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET-
T ss_pred ccceEEEEEECCCCCEEEEEeCCC---EEEEEECCCCc------EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC-
Confidence 789999999999999999999999 99999997655 56666654 577776 5789999999998
Q ss_pred CCCceEEEEECC
Q 005140 534 GFNGQLEFYNVD 545 (712)
Q Consensus 534 ~~dg~v~iwd~~ 545 (712)
||.|+||+++
T Consensus 377 --Dg~I~iW~~~ 386 (388)
T d1erja_ 377 --DCKARIWKYK 386 (388)
T ss_dssp --TSEEEEEEEE
T ss_pred --CCEEEEEeee
Confidence 9999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=9.7e-28 Score=247.47 Aligned_cols=328 Identities=13% Similarity=0.068 Sum_probs=223.0
Q ss_pred cceEEEcC-CCcEEEEEecCceEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 216 ESFVQWSP-LGTYLATVHRQGAAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 216 v~~v~~Sp-dg~~lat~~~~~i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
...-.||| ||+++|+++...+.||+.. ++..+. +.|. .|.+++|||||++|++++.+. ...|++||+.
T Consensus 5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~-~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~--------g~~v~v~d~~ 74 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSRGQAFIQDVS-GTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTRE--------GDFLGIYDYR 74 (360)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTT-SSBEEE-CSCCSCEEEEEECSSSEEEEEEEETT--------EEEEEEEETT
T ss_pred hhcccccCCCCCEEEEEECCeEEEEECC-CCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCC--------CCEEEEEECC
Confidence 34568999 9999999998889999998 555544 4455 599999999999999877651 1379999998
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
+++.. .+..|...+. +++|+| ||++|++++ ++.+.+|++.++........+...+.+++|+|+|
T Consensus 75 ~~~~~-~~~~~~~~v~-------------~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 139 (360)
T d1k32a3 75 TGKAE-KFEENLGNVF-------------AMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS 139 (360)
T ss_dssp TCCEE-ECCCCCCSEE-------------EEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred CCcEE-EeeCCCceEE-------------eeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccce
Confidence 77654 4555655542 699999 999999998 9999999999888766555666778999999999
Q ss_pred CeEEEEeecCC---CCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 373 PIISLFVPELG---GGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 373 ~~la~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
++|++...... .......+++|+....+...... .......+.|+|+|++|++++.+... .+|+...
T Consensus 140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~s~~~~~---------~~~d~~~ 209 (360)
T d1k32a3 140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRSLD---------PSPDRVV 209 (360)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEEECTTSCEEEEEESCCCC---------CEECSSS
T ss_pred eeeeeeccccccceeeccccceeeeccccCceeeecc-cccccccccccCCCCEEEEEeCCCce---------Ecccccc
Confidence 99997543321 12334467788887654333222 33344557899999999999887663 2332211
Q ss_pred CC----cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCC-
Q 005140 450 RD----IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG- 524 (712)
Q Consensus 450 ~~----~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg- 524 (712)
.. .......+..|...+..+.|+|++..++.+..+......++|.+....+ ....+....+ .+..+.+.+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~ 286 (360)
T d1k32a3 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG--DYRMIIPLES-SILIYSVPVHGE 286 (360)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB--CEEEEEECSS-EEEEEECCCCCS
T ss_pred cceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcC--ceeEeeecCC-CceEEEEEecCC
Confidence 10 0111122334566666778889888777655432211222333322111 1223333332 33444444443
Q ss_pred --CeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 525 --RFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 525 --~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
.+++.++. ++.|++||+.+++.. .+...+.+++|||||++|++++. |+.|++|++..
T Consensus 287 ~~~~~~~~~~---~~~i~~~d~~~~~~~--~~~~~v~~~~~SpDG~~l~~~~~-----Dg~i~v~d~~~ 345 (360)
T d1k32a3 287 FAAYYQGAPE---KGVLLKYDVKTRKVT--EVKNNLTDLRLSADRKTVMVRKD-----DGKIYTFPLEK 345 (360)
T ss_dssp HHHHHHCCCC---CEEEEEEETTTCCEE--EEEEEEEEEEECTTSCEEEEEET-----TSCEEEEESSC
T ss_pred CeeEEEecCC---CCEEEEEECCCCeEE--EecCCcCEEEECCCCCEEEEEEC-----CCeEEEEECCC
Confidence 45555655 899999999987653 33456899999999999999999 99999999873
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.1e-26 Score=237.07 Aligned_cols=282 Identities=11% Similarity=0.192 Sum_probs=211.0
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCC
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 373 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (712)
.+..+++.+|...+. +++|+| ++++||+++ ||+|+|||+.+++.+.....|...|.+++|+|++.
T Consensus 45 ~~~~~tL~GH~~~I~-------------~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 110 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIY-------------AMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CCEEEEECCCSSCEE-------------EEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS
T ss_pred eeeeEEECCCCCCEE-------------EEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce
Confidence 346678999998874 799999 999999999 99999999999998877777888899999999999
Q ss_pred eEEEEeecCCCCCCCeEEEEEecCCccceeeeeee-eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 374 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF-SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 374 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
++++ ++.++.+.+|.+............+. ............+..+.....+.. ...+... .
T Consensus 111 ~l~~-----~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~ 173 (340)
T d1tbga_ 111 YVAC-----GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT---------CALWDIE---T 173 (340)
T ss_dssp EEEE-----EETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTE---------EEEEETT---T
T ss_pred eeee-----ecccceeecccccccccccccceeccccccccccccccccccccccccccc---------ccccccc---c
Confidence 9998 77787777766544332211111111 111111222333344444444332 1222111 1
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEE
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLA 530 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~ 530 (712)
.........+...+....+.+.+.+++++..++ .|++||++++. .+..+.++ .|++++|+|+|++|+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~v~i~d~~~~~------~~~~~~~h~~~i~~v~~~p~~~~l~s~ 244 (340)
T d1tbga_ 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA---SAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATG 244 (340)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSEEEEEETTT---EEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceeEeeeccccccceeEEeecCc---eEEEEECCCCc------EEEEEeCCCCCeEEEEECCCCCEEEEE
Confidence 111223335577889999999999999999999 99999997654 55666544 78999999999999999
Q ss_pred eccCCCceEEEEECCcceeeee----ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--ccccee
Q 005140 531 GLKGFNGQLEFYNVDELETMAT----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFF 603 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~~~~~----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~ 603 (712)
+. ||.|++|++.....+.. .+...+++++|+|+|++|++++. |+.|+||++. +..+... |.+.|+
T Consensus 245 s~---d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~H~~~V~ 316 (340)
T d1tbga_ 245 SD---DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-----DFNCNVWDALKADRAGVLAGHDNRVS 316 (340)
T ss_dssp ET---TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET-----TSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred eC---CCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC-----CCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 98 99999999998776553 34467999999999999999999 9999999986 5555544 678999
Q ss_pred eeEEecCCCCCCChhhHHHHH
Q 005140 604 QFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 604 ~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+++|+|++.+|+|++.|+.|+
T Consensus 317 ~l~~s~d~~~l~s~s~Dg~v~ 337 (340)
T d1tbga_ 317 CLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp EEEECTTSSCEEEEETTSCEE
T ss_pred EEEEeCCCCEEEEEccCCEEE
Confidence 999999999999999887654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-26 Score=234.81 Aligned_cols=276 Identities=12% Similarity=0.176 Sum_probs=197.0
Q ss_pred ccceEEEcCCCcEEEEEecCceE--Eeecc-cCcceeeee--cCC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccE
Q 005140 215 TESFVQWSPLGTYLATVHRQGAA--VWGGA-NTFNRLMRY--AHP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~--iw~~~-~~~~~~~~~--~~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+++++|+|+|..||+++.+.+. .|+.. .....+..+ |+. .|++++||| +|++|++++.| ++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D----------g~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES----------GK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT----------SE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC----------CC
Confidence 45789999999999999888744 56543 122333343 233 499999998 57899999999 99
Q ss_pred EEEEEccCCceeeecc--------CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceeccc
Q 005140 287 INIFDVRTGKVMRDFK--------GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDK 355 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~ 355 (712)
|+|||+..++....+. .+...+. +++|++ ++++|++++ ++.+.+|+..+++.+..
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-------------DISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGE 154 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-------------EEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred EEEeeecCCcceeeeecccccccccccCcEE-------------EEEECC-CCCccceeeccccceEEEEeeccccccee
Confidence 9999997665433332 3333331 689999 999988765 67899999998888777
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
...|...|.+++|+|++..+++. ++.++.+++ |+.+..+...
T Consensus 155 ~~~h~~~v~~~~~~~~~~~~~~~----~~~d~~v~~--~d~~~~~~~~-------------------------------- 196 (325)
T d1pgua1 155 VSGHSQRINACHLKQSRPMRSMT----VGDDGSVVF--YQGPPFKFSA-------------------------------- 196 (325)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEE----EETTTEEEE--EETTTBEEEE--------------------------------
T ss_pred eeecccccccccccccccceEEE----eeccccccc--ccccccccce--------------------------------
Confidence 77788889999999998765432 445555444 4432211000
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK- 513 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~- 513 (712)
......+|...|.+++|+|+ +.+|++++.|+ .|++||++++. .+..+.++
T Consensus 197 -------------------~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~---~i~iwd~~~~~------~~~~l~~~~ 248 (325)
T d1pgua1 197 -------------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR---KISCFDGKSGE------FLKYIEDDQ 248 (325)
T ss_dssp -------------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTC---CEEEEETTTCC------EEEECCBTT
T ss_pred -------------------ecccccCCCCccEEeeeccccceecccccccc---ceeeeeecccc------ccccccccc
Confidence 00112356788999999996 68888999999 99999997654 56666544
Q ss_pred -ceeEEEEc---cCCCeEEEEeccCCCceEEEEECCcceeeee--ccc--cceee--EEECCCCCEEEEEEccceecccc
Q 005140 514 -QANALFWS---PSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEH--FMATD--VEWDPTGRYVATAVTSVHEMENG 583 (712)
Q Consensus 514 -~v~~l~~s---pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~--~~v~~--~~~spdg~~l~t~s~~~~~~d~~ 583 (712)
++..+.|+ |+|++|++++. |+.|+|||+.+++.+.. .+. ..+.. +.|+++ .+|++++. |+.
T Consensus 249 ~~v~~~~~s~~~~dg~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~-----dg~ 319 (325)
T d1pgua1 249 EPVQGGIFALSWLDSQKFATVGA---DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSL-----DGT 319 (325)
T ss_dssp BCCCSCEEEEEESSSSEEEEEET---TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEET-----TSC
T ss_pred cccccceeeeeccCCCEEEEEeC---CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEEC-----CCE
Confidence 45555555 68999999998 99999999999888764 222 23333 444443 47889999 999
Q ss_pred EEEEEe
Q 005140 584 FNIWSF 589 (712)
Q Consensus 584 v~iw~~ 589 (712)
|+||++
T Consensus 320 i~vwdl 325 (325)
T d1pgua1 320 LNFYEL 325 (325)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.3e-25 Score=228.30 Aligned_cols=305 Identities=14% Similarity=0.219 Sum_probs=219.6
Q ss_pred cCCCe-eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AHPQV-KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~~~v-~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
|...| .|+ +++|++||||+.| ++|+|||+.+++.++.+.+|...+. +++|+| +
T Consensus 11 H~~~vitc~--~~~~~~l~tgs~D----------g~i~vWd~~~~~~~~~l~~H~~~V~-------------~l~~s~-~ 64 (355)
T d1nexb2 11 HMTSVITCL--QFEDNYVITGADD----------KMIRVYDSINKKFLLQLSGHDGGVW-------------ALKYAH-G 64 (355)
T ss_dssp CSSSCEEEE--EEETTEEEEEETT----------TEEEEEETTTTEEEEEEECCSSCEE-------------EEEEET-T
T ss_pred cCCCcEEEE--EECCCEEEEEeCC----------CeEEEEECCCCcEEEEEECCCCCEE-------------EEEEcC-C
Confidence 33444 555 5578999999999 9999999999999999999988774 799998 7
Q ss_pred CCEEEEec-CCeEEEEEcCCceeccccccccc--CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee-
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVE--NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN- 406 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 406 (712)
+ +|++++ |+.|++|+............... ......+++++..+++ ++.++.+++|.+. ....+....
T Consensus 65 ~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~iw~~~--~~~~~~~~~~ 136 (355)
T d1nexb2 65 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLP--KESSVPDHGE 136 (355)
T ss_dssp T-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEE-----EETTSEEEEEECC--C---------
T ss_pred C-EEEEEecccccccccccccccccccccccccccccccccccccceeee-----ecCCCcEEEEEcc--CCceeccccc
Confidence 5 677777 99999999997765543333222 2456678889999988 6677776665443 322111000
Q ss_pred --------------------eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 407 --------------------LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 407 --------------------~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
..........+.+++..++.+..+.. +.+|++.... ......++...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~---------i~~~d~~~~~---~~~~~~~~~~~~ 204 (355)
T d1nexb2 137 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT---------LIVWDVAQMK---CLYILSGHTDRI 204 (355)
T ss_dssp --CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSC---------EEEEETTTTE---EEEEECCCSSCE
T ss_pred cceeccceeccccccceeeeeeeccccccccccccceeeeecccce---------eeeeeccccc---ceeeeecccccc
Confidence 00001111245677888888877766 6777765321 223455678889
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
.++.|+|++.++++++.|+ .|++|++.++. .+..+.+| .+.+++|+ +++|++++. ||.|++||+
T Consensus 205 ~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~------~~~~~~~h~~~v~~~~~~--~~~l~~~~~---dg~i~iwd~ 270 (355)
T d1nexb2 205 YSTIYDHERKRCISASMDT---TIRIWDLENGE------LMYTLQGHTALVGLLRLS--DKFLVSAAA---DGSIRGWDA 270 (355)
T ss_dssp EEEEEETTTTEEEEEETTS---CEEEEETTTCC------EEEEECCCSSCCCEEEEC--SSEEEEECT---TSEEEEEET
T ss_pred ccccccccceeeecccccc---eEEeeeccccc------cccccccccccccccccc--cceeeeeec---ccccccccc
Confidence 9999999999999999999 99999997654 55566554 67888886 468999988 999999999
Q ss_pred CcceeeeeccccceeeE-EECCCCCEEEEEEccceeccccEEEEEec-Cceeeee---cccceeeeEEecCCCCCCChhh
Q 005140 545 DELETMATAEHFMATDV-EWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT---LKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 545 ~~~~~~~~~~~~~v~~~-~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~---~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
.++......|+..+..+ .+++++++|+++ . |+.|+|||+. |+++... |.+.|++++|+|+ ..+++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~-----d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~ 343 (355)
T d1nexb2 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSG-S-----ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEK 343 (355)
T ss_dssp TTCCEEEEEECTTCCCCCEEEECSSEEEEE-E-----TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEES
T ss_pred cccceecccccCCceEEEEEcCCCCEEEEE-e-----CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEEC
Confidence 98888777777777665 456777766655 5 6899999987 6665432 6688999999987 45667777
Q ss_pred HHHH
Q 005140 620 EEEI 623 (712)
Q Consensus 620 d~~i 623 (712)
|+++
T Consensus 344 dg~~ 347 (355)
T d1nexb2 344 DGQS 347 (355)
T ss_dssp SSCE
T ss_pred CCcE
Confidence 7653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.3e-24 Score=216.72 Aligned_cols=303 Identities=11% Similarity=0.141 Sum_probs=210.1
Q ss_pred eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 249 MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 249 ~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
.+.|...|.+ +++++|++||||+.| ++|+|||+.++++++++.+|...+. +++|++
T Consensus 12 l~GH~~~V~s-~~~~~g~~l~sgs~D----------g~i~vWd~~~~~~~~~~~~h~~~V~-------------~v~~~~ 67 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNRIVSGSDD----------NTLKVWSAVTGKCLRTLVGHTGGVW-------------SSQMRD 67 (342)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETT----------SCEEEEETTTCCEEEECCCCSSCEE-------------EEEEET
T ss_pred ECCcCCceEE-EEEECCCEEEEEeCC----------CeEEEEECCCCCEEEEEeCCCCCEE-------------EEEeCC
Confidence 3333345755 477789999999999 9999999999999999999987763 688887
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
+ +|++++ |+.+++|+................+......+ ..+.. +..+.. +.+++..+.+.......
T Consensus 68 -~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~d~~--i~~~~~~~~~~~~~~~~ 135 (342)
T d2ovrb2 68 -N--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVS-----GSRDAT--LRVWDIETGQCLHVLMG 135 (342)
T ss_dssp -T--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEE-----EETTSE--EEEEESSSCCEEEEEEC
T ss_pred -C--ccccceecccccccccccccceecccccceeEeeeeccc--ccccc-----ccccee--EEEeecccccceeeeec
Confidence 4 888888 99999999987665544333334454444443 33333 224443 55566555443322221
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
.......+.+....++++..++. +.+|++.... ....+.+|...+. .+++++.+|++++.|+
T Consensus 136 --~~~~~~~~~~~~~~~~~~~~d~~---------i~~~d~~~~~---~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg-- 197 (342)
T d2ovrb2 136 --HVAAVRCVQYDGRRVVSGAYDFM---------VKVWDPETET---CLHTLQGHTNRVY--SLQFDGIHVVSGSLDT-- 197 (342)
T ss_dssp --CSSCEEEEEECSSCEEEEETTSC---------EEEEEGGGTE---EEEEECCCSSCEE--EEEECSSEEEEEETTS--
T ss_pred --ccccceeeccccceeeeecCCCe---------EEEeecccce---eeEEEcCcccccc--cccCCCCEEEEEeCCC--
Confidence 11122234566677777777766 6777765322 2344556655554 5566899999999999
Q ss_pred CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVE 562 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~ 562 (712)
.|++|+++.+. .+..+..+.....++++++++|++++. ||.|++||+...+.... .|...+.++.
T Consensus 198 -~i~~~d~~~~~------~~~~~~~~~~~v~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 267 (342)
T d2ovrb2 198 -SIRVWDVETGN------CIHTLTGHQSLTSGMELKDNILVSGNA---DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 267 (342)
T ss_dssp -CEEEEETTTCC------EEEEECCCCSCEEEEEEETTEEEEEET---TSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred -eEEEeecccce------eeeEecccccceeEEecCCCEEEEEcC---CCEEEEEecccccccccccccceeeeceeecc
Confidence 99999997654 566666554333445556779999998 99999999987665543 2334555555
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEec-Cceeeee-------cccceeeeEEecCCCCCCChhhHHH
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT-------LKDHFFQFLWRPRPPSFLTPEKEEE 622 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~-------~~~~i~~~~w~p~~~~l~s~~~d~~ 622 (712)
++ +.++++++. |+.|+||++. |+.+... +...|++++|+|++..+++++.+++
T Consensus 268 ~~--~~~~~s~s~-----Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt 328 (342)
T d2ovrb2 268 FN--KNFVITSSD-----DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328 (342)
T ss_dssp EC--SSEEEEEET-----TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred cC--CCeeEEEcC-----CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence 55 579999999 9999999986 6665543 3457999999999999999888764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=9.1e-25 Score=222.14 Aligned_cols=295 Identities=11% Similarity=0.067 Sum_probs=197.4
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc---eeeeecCCC-eeEEEecCCC-CEEEEEcCCCCCCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN---RLMRYAHPQ-VKLIDFSPGE-KYLVTYSSHEPSNP 279 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~---~~~~~~~~~-v~~i~~Spdg-~~l~t~s~d~~~~~ 279 (712)
+...++|...|++|+|||+|++||+++.|+ |+|||+..... ....+.|.. |.+++|+|++ .+|++|+.|
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d----- 78 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----- 78 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-----
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc-----
Confidence 446789999999999999999999999999 88999862222 233334554 9999999874 689999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
+.|++|++..+........+..... ....+.+ ++..+++++ ++.+.+||+.++........
T Consensus 79 -----~~v~~w~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~ 140 (342)
T d1yfqa_ 79 -----GEILKVDLIGSPSFQALTNNEANLG------------ICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp -----SCEEEECSSSSSSEEECBSCCCCSC------------EEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred -----cceeeeecccccccccccccccccc------------ccccccc-ccccccccccccccceeeccccccceeeec
Confidence 9999999988877666655544321 1345666 777888877 99999999875433221111
Q ss_pred cc------cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 359 KV------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 359 ~~------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
+. .....+.+.+.+..+++ ++.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~d~~ 171 (342)
T d1yfqa_ 141 NLNSNNTKVKNKIFTMDTNSSRLIV-------------------------------------------------GMNNSQ 171 (342)
T ss_dssp ESCSSSSSSCCCEEEEEECSSEEEE-------------------------------------------------EESTTE
T ss_pred ccccccccceeeeeeeeccCCceee-------------------------------------------------ecCCCc
Confidence 10 11223344444444444 333333
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCce---eEEE
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRV---SKLT 508 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~---~~~~ 508 (712)
+.+|++..............+...+.+.++.| ++..+++++.++ .+.+|++......... ....
T Consensus 172 ---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 172 ---------VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG---RVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp ---------EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS---EEEEEECCTTCCSTTCTTCEEEE
T ss_pred ---------EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC---eEEEEEecCCcceeeccccceee
Confidence 34444332222111122223344455555544 678889999999 8999988653221110 1111
Q ss_pred Ee------C--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEcccee
Q 005140 509 TL------K--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 509 ~~------~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
.. . ...+++++|+|++++|++|+. ||.|++||+.+++.+.+.. ......++|+|+|++|++++.
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~---Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~s---- 312 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS---- 312 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEE----
T ss_pred eeeeccCCCcccccceeEEecCCccEEEEECC---CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEc----
Confidence 11 1 125789999999999999998 9999999999998887653 456677889999999999998
Q ss_pred ccccEEEEEecCc
Q 005140 580 MENGFNIWSFNGK 592 (712)
Q Consensus 580 ~d~~v~iw~~~g~ 592 (712)
|+.+++|.....
T Consensus 313 -dd~~~~~~~~~~ 324 (342)
T d1yfqa_ 313 -DDTFKTNAAIDQ 324 (342)
T ss_dssp -CTHHHHCSSSCT
T ss_pred -CCcEEEeeeeCC
Confidence 788888865443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=2.1e-25 Score=229.71 Aligned_cols=317 Identities=9% Similarity=-0.010 Sum_probs=207.6
Q ss_pred CC-CCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC-c--eEEeecccCcceeeeecC
Q 005140 178 DE-KARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ-G--AAVWGGANTFNRLMRYAH 253 (712)
Q Consensus 178 ~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~-~--i~iw~~~~~~~~~~~~~~ 253 (712)
+| +|+ .++. .+.+.+.+|+. . ......+ .|...|++++|||||++|++++.+ + +.+|+.. ++.......|
T Consensus 11 SP~dG~-~~a~-~~~g~v~v~d~-~-~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~-~~~~~~~~~~ 84 (360)
T d1k32a3 11 SPLDGD-LIAF-VSRGQAFIQDV-S-GTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR-TGKAEKFEEN 84 (360)
T ss_dssp EECGGG-CEEE-EETTEEEEECT-T-SSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT-TCCEEECCCC
T ss_pred cCCCCC-EEEE-EECCeEEEEEC-C-CCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC-CCcEEEeeCC
Confidence 44 444 3333 44567889988 2 3333444 688899999999999999987755 3 6799999 6555544445
Q ss_pred C-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 254 P-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 254 ~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
. .|.+++|||||++|++++.+ +.+++|++.+++..+.+..+..... .++|+| ||+
T Consensus 85 ~~~v~~~~~spdg~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~sp-dg~ 140 (360)
T d1k32a3 85 LGNVFAMGVDRNGKFAVVANDR----------FEIMTVDLETGKPTVIERSREAMIT-------------DFTISD-NSR 140 (360)
T ss_dssp CCSEEEEEECTTSSEEEEEETT----------SEEEEEETTTCCEEEEEECSSSCCC-------------CEEECT-TSC
T ss_pred CceEEeeeecccccccceeccc----------cccccccccccceeeeeeccccccc-------------chhhcc-cee
Confidence 4 49999999999999999999 8999999999998888877765542 689999 999
Q ss_pred EEEEec-----------CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC----
Q 005140 333 YFAKLG-----------KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP---- 397 (712)
Q Consensus 333 ~la~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~---- 397 (712)
+|+.+. ++.+.+|++.++...... .+...+..++|+|+|+.|++ ++.++...+|.....
T Consensus 141 ~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~-----~s~~~~~~~~d~~~~~~~~ 214 (360)
T d1k32a3 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYY-----LSYRSLDPSPDRVVLNFSF 214 (360)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEE-----EESCCCCCEECSSSSCEEC
T ss_pred eeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEE-----EeCCCceEcccccccceee
Confidence 998653 356899999987654322 34455788999999999998 555555555432111
Q ss_pred -CccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-
Q 005140 398 -SKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG- 475 (712)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g- 475 (712)
.........+.......+.|++++..++.+..+.... ...++.+....... ..+..+.+.+..+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 286 (360)
T d1k32a3 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM------YKRSSPINVDPGDY--RMIIPLESSILIYSVPVHGE 286 (360)
T ss_dssp CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG------GGGCEECSCCCBCE--EEEEECSSEEEEEECCCCCS
T ss_pred ccccceEEEecccCccccceECCCcCcccccceeeccc------ccceeecccCcCce--eEeeecCCCceEEEEEecCC
Confidence 1111111111112222335677776655433221100 01233332222221 1222345555555555443
Q ss_pred --CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 476 --HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 476 --~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.+++.++.++ .|++||+.++. +..+ ...+.+++|||||++|++++. ||.|++||+.+++...+
T Consensus 287 ~~~~~~~~~~~~---~i~~~d~~~~~-------~~~~-~~~v~~~~~SpDG~~l~~~~~---Dg~i~v~d~~~~~~~~~ 351 (360)
T d1k32a3 287 FAAYYQGAPEKG---VLLKYDVKTRK-------VTEV-KNNLTDLRLSADRKTVMVRKD---DGKIYTFPLEKPEDERT 351 (360)
T ss_dssp HHHHHHCCCCCE---EEEEEETTTCC-------EEEE-EEEEEEEEECTTSCEEEEEET---TSCEEEEESSCTTSCEE
T ss_pred CeeEEEecCCCC---EEEEEECCCCe-------EEEe-cCCcCEEEECCCCCEEEEEEC---CCeEEEEECCCCCcceE
Confidence 3455556666 89999987643 1222 235889999999999999998 99999999997766544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.5e-23 Score=211.28 Aligned_cols=273 Identities=15% Similarity=0.211 Sum_probs=186.6
Q ss_pred hccCCCCCceEEEEECCeeE-EEecCCC-CCCCcccccCCC-cccceEEEcC--CCcEEEEEecCc-eEEeecccCccee
Q 005140 175 WLTDEKARDQFVIRSGTDTE-VLWNDAR-HLKPEPVYKRSY-WTESFVQWSP--LGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~-~~w~~~~-~~~~~~~~~~~~-~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
..++|++. .+++..++... ..|+... .......+.+|. ..|++++||| +|.+||+++.|| |+||+.. .....
T Consensus 23 l~~~~~~~-~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~-~~~~~ 100 (325)
T d1pgua1 23 LSYDPTTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT-FDKES 100 (325)
T ss_dssp CEEETTTT-EEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE-EEGGG
T ss_pred EEECCCCC-EEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec-CCcce
Confidence 34567665 55666666654 3565522 234455677774 6799999998 678999999999 8899986 33221
Q ss_pred e----------eecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCC
Q 005140 249 M----------RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 249 ~----------~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (712)
. ..+...|.+++|+|+|++|++++.+ ..+.+.+|+..+++.+..+.+|...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~~v~--------- 163 (325)
T d1pgua1 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG--------RDNFGVFISWDSGNSLGEVSGHSQRIN--------- 163 (325)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC--------SSCSEEEEETTTCCEEEECCSCSSCEE---------
T ss_pred eeeecccccccccccCcEEEEEECCCCCccceeecc--------ccceEEEEeecccccceeeeecccccc---------
Confidence 1 1123359999999999999988764 115688999999999999999887763
Q ss_pred CCcCeEEecCCCCCE-EEEec-CCeEEEEEcCCceecccc---cccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEE
Q 005140 319 VSWPVFRWGGGKDKY-FAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 319 ~~~~~~~~s~~dg~~-la~~~-d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~ 392 (712)
++.|+| ++.+ +++++ |+.+++|+..+++..... ..+...|.+++|+|+ +.+|++ ++.++.+++|
T Consensus 164 ----~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s-----~~~d~~i~iw 233 (325)
T d1pgua1 164 ----ACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT-----VGSDRKISCF 233 (325)
T ss_dssp ----EEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE-----EETTCCEEEE
T ss_pred ----cccccc-cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccc-----cccccceeee
Confidence 689999 8875 55666 999999999877654333 234455899999997 567776 5566665554
Q ss_pred EEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
+..+.+.+ ..+.+|..++.++.|+
T Consensus 234 --d~~~~~~~------------------------------------------------------~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 234 --DGKSGEFL------------------------------------------------------KYIEDDQEPVQGGIFA 257 (325)
T ss_dssp --ETTTCCEE------------------------------------------------------EECCBTTBCCCSCEEE
T ss_pred --eecccccc------------------------------------------------------ccccccccccccceee
Confidence 43222111 1122344444433333
Q ss_pred ---eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCc--eeEEEEccC-CCeEEEEeccCCCceEEEEEC
Q 005140 473 ---PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQ--ANALFWSPS-GRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 473 ---p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~--v~~l~~spd-g~~l~~~~~~~~dg~v~iwd~ 544 (712)
|+|++|++++.|+ .|+|||+++++ .+..+ ..+. +..+++.+. +.+|++++. ||.|++||+
T Consensus 258 ~~~~dg~~l~s~s~D~---~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---dg~i~vwdl 325 (325)
T d1pgua1 258 LSWLDSQKFATVGADA---TIRVWDVTTSK------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSL---DGTLNFYEL 325 (325)
T ss_dssp EEESSSSEEEEEETTS---EEEEEETTTTE------EEEEEECCTTCGGGCEEEEEEEETTEEEEEET---TSCEEEEET
T ss_pred eeccCCCEEEEEeCCC---eEEEEECCCCC------EEEEEEecCCcccCeEEEEEECCCCEEEEEEC---CCEEEEEEC
Confidence 6899999999999 99999997654 44443 3332 344444433 347888887 999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=7.1e-24 Score=211.11 Aligned_cols=266 Identities=12% Similarity=0.175 Sum_probs=189.5
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
+++..+++|...|++++||| |+||+.|| |++|+.. +.. ..|...|.+++|++++ .+++++.|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~-~~~---~~h~~~V~~~~~~~~~-~~~s~s~D-------- 66 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS-SMH---QDHSNLIVSLDNSKAQ-EYSSISWD-------- 66 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTT-EEE---CCCCSCEEEEECCSTT-CCEEEETT--------
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECC-CCC---CCCCCCEEEEEecCCC-eEEEEeec--------
Confidence 45678899999999999998 99999999 8899988 432 2333459999999765 57889998
Q ss_pred CccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccC
Q 005140 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 283 ~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
++|++|++.+.+ + ..... .+.+++ ++.+++.+.++.+.+|+..++..+......
T Consensus 67 --~~v~~w~~~~~~----~--~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 120 (287)
T d1pgua2 67 --DTLKVNGITKHE----F--GSQPK--------------VASANN-DGFTAVLTNDDDLLILQSFTGDIIKSVRLN--- 120 (287)
T ss_dssp --TEEEETTEEEEE----C--SSCEE--------------EEEECS-SSEEEEEETTSEEEEEETTTCCEEEEEECS---
T ss_pred --cccccccccccc----c--cccee--------------eeeecc-CCceEEEeecccceeeeccceeeeeecccc---
Confidence 899999974332 1 11111 578888 998888888888999998877665433222
Q ss_pred eeeEEECCCCCeEEEEeecCCCCC-CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
....+++|++..+++ ++.+ +.+++
T Consensus 121 ~~~~~~~~~~~~~~v-----~~~~~~~v~~-------------------------------------------------- 145 (287)
T d1pgua2 121 SPGSAVSLSQNYVAV-----GLEEGNTIQV-------------------------------------------------- 145 (287)
T ss_dssp SCEEEEEECSSEEEE-----EETTTSCEEE--------------------------------------------------
T ss_pred ceeeeeeccCcceee-----eccccceeee--------------------------------------------------
Confidence 123345555565555 2222 22222
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEE
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALF 519 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~ 519 (712)
|++..... .......|...+.+++|+|++++|++++.++ .|++||+.++.. ....+. ..++++++
T Consensus 146 ---~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~~-----~~~~~~~h~~~v~~~~ 212 (287)
T d1pgua2 146 ---FKLSDLEV--SFDLKTPLRAKPSYISISPSETYIAAGDVMG---KILLYDLQSREV-----KTSRWAFRTSKINAIS 212 (287)
T ss_dssp ---EETTEEEE--EEECSSCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEE-----EECCSCCCSSCEEEEE
T ss_pred ---eeccccce--eeeeeeccCCceeEEEeccCccccccccccc---cccceeeccccc-----ccccccccccccceee
Confidence 22111000 0011124578899999999999999999999 999999976442 122223 34789999
Q ss_pred EccC----------CCeEEEEeccCCCceEEEEECCc-ceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 520 WSPS----------GRFIVLAGLKGFNGQLEFYNVDE-LETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 520 ~spd----------g~~l~~~~~~~~dg~v~iwd~~~-~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
|+|. +.+|++++. |+.|+|||+.+ .+.+.. .|...|++++|+|++ .|++++. |+.|++
T Consensus 213 ~~p~~~~~~~~~~~~~~l~sgs~---D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~-----D~~v~i 283 (287)
T d1pgua2 213 WKPAEKGANEEEIEEDLVATGSL---DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA-----DACIKR 283 (287)
T ss_dssp ECCCC------CCSCCEEEEEET---TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEET-----TSCEEE
T ss_pred ecccccccccccCCCCeeEeecC---CCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEEC-----CCeEEE
Confidence 9875 468999988 99999999975 444443 677899999999987 5888998 999999
Q ss_pred EEe
Q 005140 587 WSF 589 (712)
Q Consensus 587 w~~ 589 (712)
|++
T Consensus 284 W~i 286 (287)
T d1pgua2 284 WNV 286 (287)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=3.7e-23 Score=218.10 Aligned_cols=355 Identities=10% Similarity=-0.003 Sum_probs=232.6
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeec----CCC-e
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA----HPQ-V 256 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~----~~~-v 256 (712)
++....++.+.+|+. ..++.+..+..|. .+..++|||||++|++++.++ +.+||+. +.. .+.++. |.+ +
T Consensus 35 ~v~~~d~g~v~v~D~-~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~-t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 35 SVTLRDAGQIALIDG-STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEETTTTEEEEEET-TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETT-SSSCCEEEEEECCSEEEEEE
T ss_pred EEEEcCCCEEEEEEC-CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEee-CCCceEEEEEecCCCCCCeE
Confidence 356667788899998 6788888887774 588999999999999999888 8899987 443 333332 222 6
Q ss_pred eEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 257 KLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 257 ~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.++.|||||++| ++++.+ +.|+|||..+++.++.+..+......... ...+. ...+.+|| +|.+++
T Consensus 112 ~s~~~SpDG~~l~vs~~~~----------~~v~i~d~~t~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~s~-dg~~~~ 178 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWP----------PQYVIMDGETLEPKKIQSTRGMTYDEQEY-HPEPR-VAAILASH-YRPEFI 178 (432)
T ss_dssp ECCSTTCTTTEEEEEEEET----------TEEEEEETTTCCEEEEEECCEECTTTCCE-ESCCC-EEEEEECS-SSSEEE
T ss_pred EecccCCCCCEEEEEcCCC----------CeEEEEeCccccceeeeccCCccccceec-cCCCc-eeEEEECC-CCCEEE
Confidence 777899999987 566667 89999999999999888766543210000 00010 01478899 998765
Q ss_pred Eec--CCeEEEEEcCCceecccccccc-cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee----
Q 005140 336 KLG--KNMISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF---- 408 (712)
Q Consensus 336 ~~~--d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---- 408 (712)
... ++.|.+|+..+++......+.. ..+.+++|+|+|+++++. + .....+..++....+.+......
T Consensus 179 vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va-----~-~~~~~v~v~d~~~~~~~~~~~~g~~~~ 252 (432)
T d1qksa2 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA-----A-NARNKLVVIDTKEGKLVAIEDTGGQTP 252 (432)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE-----E-GGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred EEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEe-----c-cccceEEEeecccceEEEEeccCcccc
Confidence 444 8999999988765443333333 457899999999988873 2 22335666666655443322111
Q ss_pred -eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 409 -SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 409 -~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
........+...|...+..... . ..+.+|...... +..|...+....++|++..+++++.+.
T Consensus 253 ~~~~~~~~~~~~~g~~~~~~~lg-~-------~~v~~~~~~~~~-------~~~~~~~v~~~~~~~~g~~~~~~s~p~-- 315 (432)
T d1qksa2 253 HPGRGANFVHPTFGPVWATSHMG-D-------DSVALIGTDPEG-------HPDNAWKILDSFPALGGGSLFIKTHPN-- 315 (432)
T ss_dssp CCTTCEEEEETTTEEEEEEEBSS-S-------SEEEEEECCTTT-------CTTTBTSEEEEEECSCSCCCCEECCTT--
T ss_pred ccCcccceecCCCCceecccccC-C-------ceEEeccccccc-------ccccccEEEEEEEcCCCCeEEEEecCC--
Confidence 1111112223233333222111 0 113344332211 235667888999999999999998887
Q ss_pred CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCC
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTG 567 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg 567 (712)
..++|...+... ......++++ |||+.+++++. |+.+++|++.++..+. .++..+.+++|||||
T Consensus 316 -~~~lw~~~~~~~----------~~~~~~sv~v-pDg~~la~~s~---d~~~k~w~~~~~~~l~-~~~~~v~~~~fS~DG 379 (432)
T d1qksa2 316 -SQYLYVDATLNP----------EAEISGSVAV-FDIKAMTGDGS---DPEFKTLPIAEWAGIT-EGQPRVVQGEFNKDG 379 (432)
T ss_dssp -CSEEEEECTTCS----------SHHHHTCEEE-EEGGGCCCSSS---CCCEEEECHHHHHTCC-SSCCEEEEEEECTTS
T ss_pred -ccceeecccCCC----------CCCeeeEEEE-Eechhhccccc---CCceEecccccccccC-CCCCcEEEeEECCCC
Confidence 788997643221 1112345565 99999999998 9999999987665443 455678899999999
Q ss_pred CEEEEEEccceeccccEEEEEecCcee
Q 005140 568 RYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 568 ~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
++|+++.......++.|.|||.....+
T Consensus 380 ~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 380 TEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CEEEEEEecCCCCCCcEEEEECCCceE
Confidence 999776532111268899999875443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=5.8e-22 Score=209.19 Aligned_cols=333 Identities=13% Similarity=0.086 Sum_probs=205.2
Q ss_pred EEcCCCc--EEEEEecCc-eEEeecccCcceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 220 QWSPLGT--YLATVHRQG-AAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 220 ~~Spdg~--~lat~~~~~-i~iw~~~~~~~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
.+++|.+ ++++.+.++ |+|||+. +++.+.++.. ..+..++|||||++|++++.| ++|++||+.++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~-t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d----------~~v~vwd~~t~ 93 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYAVHISRMSASGRYLLVIGRD----------ARIDMIDLWAK 93 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETT-TCSEEEEEECCSSEEEEEECTTSCEEEEEETT----------SEEEEEETTSS
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECC-CCcEEEEEeCCCCeeEEEECCCCCEEEEEeCC----------CCEEEEEccCC
Confidence 3455533 557777777 8899999 8999888864 459999999999999999999 99999999988
Q ss_pred ceeee--cc---CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccC------
Q 005140 296 KVMRD--FK---GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVEN------ 362 (712)
Q Consensus 296 ~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~------ 362 (712)
+.... +. +|.... + ++.||| ||++++.++ ++.+.+||..++.++.....+...
T Consensus 94 ~~~~~~~i~~~~~~~~~~------------~-s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 159 (426)
T d1hzua2 94 EPTKVAEIKIGIEARSVE------------S-SKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159 (426)
T ss_dssp SCEEEEEEECCSEEEEEE------------E-CCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred ceeEEEEEeCCCCCcceE------------E-eeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceee
Confidence 75432 22 232222 1 468899 999876665 999999999988766443333222
Q ss_pred -----eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee-eeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 363 -----VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN-LFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 363 -----v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
...+..++++..+++.. .....++.+.......+.... ........+.++|+|++++++......
T Consensus 160 ~~~~~~~~i~~s~d~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~--- 230 (426)
T d1hzua2 160 HPEPRVAAIIASHEHPEFIVNV------KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNK--- 230 (426)
T ss_dssp ESCCCEEEEEECSSSSEEEEEE------TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSE---
T ss_pred cCCCceeEEEECCCCCEEEEec------CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccc---
Confidence 34566677776666531 123445555554443322221 123334457899999999887765431
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc-CceeEEEEeCCC--
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA-GRVSKLTTLKGK-- 513 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~-- 513 (712)
+.++++.. ...........+........+.+.+...+......+...+.+|+....... ...+....+.+|
T Consensus 231 -----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~ 304 (426)
T d1hzua2 231 -----VAVIDSKD-RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 304 (426)
T ss_dssp -----EEEEETTT-TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS
T ss_pred -----eeeeeccc-ccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCC
Confidence 22333221 111122222222233334444444433333222111126777776543211 112355555544
Q ss_pred ceeEEEEccCCCeEEEEec----cCCCceEEEEECCcceeeee-----------ccccceeeEEECCCCCEEEEEEccce
Q 005140 514 QANALFWSPSGRFIVLAGL----KGFNGQLEFYNVDELETMAT-----------AEHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~----~~~dg~v~iwd~~~~~~~~~-----------~~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
.+..++|||||++|++... +..+++|++||+.+++...+ .+...+.+++|||||++|+.++....
T Consensus 305 ~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~ 384 (426)
T d1hzua2 305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 384 (426)
T ss_dssp CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT
T ss_pred ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCC
Confidence 6899999999999996421 11278999999998765432 23456889999999998865432111
Q ss_pred eccccEEEEEecCc
Q 005140 579 EMENGFNIWSFNGK 592 (712)
Q Consensus 579 ~~d~~v~iw~~~g~ 592 (712)
..++.|.|||....
T Consensus 385 ~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 385 NDSSALVVVDDKTL 398 (426)
T ss_dssp TSCCEEEEEETTTT
T ss_pred CCCCeEEEEECCCC
Confidence 12788999998744
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-21 Score=194.18 Aligned_cols=269 Identities=13% Similarity=0.203 Sum_probs=184.7
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
.+..+..|...|+|++ +||++||||+.|+ |+|||.. +++.+..+. |. .|.+++| ++++|++++.|
T Consensus 7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~-~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D------- 74 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQY--DERVIITGSSD------- 74 (293)
T ss_dssp CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-------
T ss_pred EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCCEeeeec--ccceeeccccc-------
Confidence 3445677888888765 5899999999999 8899999 888887774 44 4988876 67899999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc---cc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK---KS 357 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~---~~ 357 (712)
+.|++|++..+............. ..+.+ ....++++. ++.+.+|+..+...... ..
T Consensus 75 ---~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (293)
T d1p22a2 75 ---STVRVWDVNTGEMLNTLIHHCEAV---------------LHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 135 (293)
T ss_dssp ---SCEEEEESSSCCEEEEECCCCSCE---------------EEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred ---cccccccccccccccccccccccc---------------ccccc-cccceeecccccceeEeecccccccccccccc
Confidence 999999999988777666554432 34455 555666666 99999999875543211 11
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.+...+..+.+.+. .+++ ++.++.
T Consensus 136 ~~~~~v~~~~~~~~--~~~~-----~s~d~~------------------------------------------------- 159 (293)
T d1p22a2 136 GHRAAVNVVDFDDK--YIVS-----ASGDRT------------------------------------------------- 159 (293)
T ss_dssp CCSSCEEEEEEETT--EEEE-----EETTSE-------------------------------------------------
T ss_pred ccccccccceeccc--cccc-----ccCCCc-------------------------------------------------
Confidence 22233444443332 2222 223332
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeE
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANA 517 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 517 (712)
+.+|++.... ....+.+|...+..+.+ ++.++++++.|+ .|++||+++.. .+.....+....
T Consensus 160 ----i~~~d~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~------~~~~~~~~~~~v 221 (293)
T d1p22a2 160 ----IKVWNTSTCE---FVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA------CLRVLEGHEELV 221 (293)
T ss_dssp ----EEEEETTTCC---EEEEEECCSSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCC------EEEEECCCSSCE
T ss_pred ----eeeecCCCCc---EEEEEcccccccccccC--CCCeEEEecCCC---EEEEEecccce------eeeeecccceee
Confidence 2333322111 11223355666666655 567899999999 99999997654 455555554444
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcc---------eeee--eccccceeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDEL---------ETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~---------~~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
..+++++.+|++++. ||.|++||+.+. ..+. ..|...|++++|+ +++|++++. |+.|+|
T Consensus 222 ~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~-----Dg~i~i 291 (293)
T d1p22a2 222 RCIRFDNKRIVSGAY---DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSH-----DDTILI 291 (293)
T ss_dssp EEEECCSSEEEEEET---TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCS-----SSEEEE
T ss_pred eeccccceEEEEEcC---CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEec-----CCEEEE
Confidence 567889999999998 999999997632 1222 3577889999995 678999999 999999
Q ss_pred EE
Q 005140 587 WS 588 (712)
Q Consensus 587 w~ 588 (712)
||
T Consensus 292 WD 293 (293)
T d1p22a2 292 WD 293 (293)
T ss_dssp EC
T ss_pred eC
Confidence 97
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=1.6e-22 Score=213.62 Aligned_cols=359 Identities=11% Similarity=0.052 Sum_probs=219.4
Q ss_pred cCCCCCceEEE-EECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee--eeec
Q 005140 177 TDEKARDQFVI-RSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL--MRYA 252 (712)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~--~~~~ 252 (712)
.+.+.+..+++ ...++.+.+|+. ..++.+..+..|. .+..++|||||++|++++.++ +.+||+. +.+.. .++.
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~-~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~-t~~~~~~~~i~ 102 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDG-DSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLW-AKEPTKVAEIK 102 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEET-TTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETT-SSSCEEEEEEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEEC-CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEcc-CCceeEEEEEe
Confidence 33445556655 456788999999 6777778888775 478999999999999999988 8899998 55432 2332
Q ss_pred ----CCC-eeEEEecCCCCEEEEEc-CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 253 ----HPQ-VKLIDFSPGEKYLVTYS-SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 253 ----~~~-v~~i~~Spdg~~l~t~s-~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
|.+ +.+++|||||++|++++ .+ +.+++||..++..+..+..+...+.. ......+. ...+..
T Consensus 103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~----------~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~~ 170 (426)
T d1hzua2 103 IGIEARSVESSKFKGYEDRYTIAGAYWP----------PQFAIMDGETLEPKQIVSTRGMTVDT-QTYHPEPR-VAAIIA 170 (426)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEES----------SEEEEEETTTCCEEEEEECCEECSSS-CCEESCCC-EEEEEE
T ss_pred CCCCCcceEEeeeecCCCCEEEEeecCC----------CeEEEEcCCccceeEEeeccCCCccc-eeecCCCc-eeEEEE
Confidence 222 67888999999986655 55 79999999999988887766543310 00000110 013566
Q ss_pred cCCCCCEEEEec--CCeEEEEEcCCceecccc-cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 327 GGGKDKYFAKLG--KNMISVYETESFTLIDKK-SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 327 s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
++ ++.+++... .+.+.+++......+... ..+...+..+.|+|+++++.+. ......+..++..+.+.+.
T Consensus 171 s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a------~~~~~~~~~~~~~~~~~~~ 243 (426)
T d1hzua2 171 SH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTA------ANNSNKVAVIDSKDRRLSA 243 (426)
T ss_dssp CS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEE------ETTCSEEEEEETTTTEEEE
T ss_pred CC-CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEee------eecccceeeeecccccEEE
Confidence 77 777666554 566666666554432221 1234458899999999988872 2334456667776665444
Q ss_pred eeeeeee--cceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcc----eeEEEecCCCCceEEEEEeeCCC
Q 005140 404 QKNLFSV--SDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIP----IEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 404 ~~~~~~~--~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
....... ......+...+. .+........ +.+.++........ .....+.+|...+.+++|+|+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~ 316 (426)
T d1hzua2 244 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD-------GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS 316 (426)
T ss_dssp EEECSSCCCCSCCEEEEETTTEEEEEEECTTT-------CEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS
T ss_pred EeccCCcccccceeeeecCCCCceEEeccCCC-------ceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc
Confidence 3322111 111111222222 1111111100 00222222211100 12345778899999999999999
Q ss_pred EEEEEE-------cCCCCCeEEEEEeecccccCceeEEE---EeC--CCceeEEEEccCCCeEEEEec--cCCCceEEEE
Q 005140 477 RFAVIH-------GDSPRPDISFYSMRTAQHAGRVSKLT---TLK--GKQANALFWSPSGRFIVLAGL--KGFNGQLEFY 542 (712)
Q Consensus 477 ~l~~~~-------~d~~~~~v~i~d~~~~~~~~~~~~~~---~~~--~~~v~~l~~spdg~~l~~~~~--~~~dg~v~iw 542 (712)
+|++.. .++ +|++||+.++.....+.++. .+. ...+.+++|||||+++++++. +..+|.|.||
T Consensus 317 ~l~v~~~~~~s~~~~~---tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~ 393 (426)
T d1hzua2 317 HLYVDTTFNPDARISQ---SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393 (426)
T ss_dssp EEEECCTTCSSHHHHT---CEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEE
T ss_pred eEEEeecCCCCcccCC---EEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEE
Confidence 999643 244 89999998765321111111 111 225788999999998866532 2248899999
Q ss_pred ECCcceeeeeccccceeeEEECCCCCEEE
Q 005140 543 NVDELETMATAEHFMATDVEWDPTGRYVA 571 (712)
Q Consensus 543 d~~~~~~~~~~~~~~v~~~~~spdg~~l~ 571 (712)
|..++++........ .++|+|+|-+
T Consensus 394 D~~T~k~~~~i~~~~----~~tp~Gk~~~ 418 (426)
T d1hzua2 394 DDKTLKLKAVVKDPR----LITPTGKFNV 418 (426)
T ss_dssp ETTTTEEEEEECCTT----CCSEEEEEEH
T ss_pred ECCCCeEEEEECCCC----ccCCCceEeE
Confidence 999999877644433 3468887743
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=4.9e-22 Score=207.47 Aligned_cols=291 Identities=15% Similarity=0.211 Sum_probs=174.5
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc-------eeeeecCC-Cee------EEEecC-CCCEEEEE
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-------RLMRYAHP-QVK------LIDFSP-GEKYLVTY 271 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-------~~~~~~~~-~v~------~i~~Sp-dg~~l~t~ 271 (712)
..++|...|.++++++ ++|+|++.|+ |+||+.. ... ......+. ++. .+..++ ++.+++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECC-CCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 4579999999999875 6999999999 8899976 322 11122222 222 222222 34577899
Q ss_pred cCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-----CCEEEEec-CCeEEEE
Q 005140 272 SSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-----DKYFAKLG-KNMISVY 345 (712)
Q Consensus 272 s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-----g~~la~~~-d~~i~iw 345 (712)
+.+ +.|++|++..+.....+..+..... .........| .++|++ + +.++++++ |+.+.+|
T Consensus 86 ~~d----------g~v~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~dg~i~vw 151 (393)
T d1sq9a_ 86 SFS----------GDLLFYRITREDETKKVIFEKLDLL--DSDMKKHSFW-ALKWGA-SNDRLLSHRLVATDVKGTTYIW 151 (393)
T ss_dssp ETT----------SCEEEEEEEECTTTCCEEEEEECCS--CTTGGGSCEE-EEEEEC-CC----CEEEEEEETTSCEEEE
T ss_pred eCC----------CcEEEEEccCCCceeeeecccccee--eeccCCCceE-EEEEec-CCCcccccEEEEEcCCCcEEEE
Confidence 999 9999999865543222211111000 0000011113 467776 4 35777777 9999999
Q ss_pred EcCCceeccc------------------ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 346 ETESFTLIDK------------------KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 346 d~~~~~~~~~------------------~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
++........ ...+...+.+++|+|++ +|++ ++.|+.++|| ++.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~las-----gs~Dg~i~iw--d~~~~~~~----- 218 (393)
T d1sq9a_ 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-----GFNNGTVQIS--ELSTLRPL----- 218 (393)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-----ECTTSEEEEE--ETTTTEEE-----
T ss_pred EeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEE-----EeCCCcEEEE--eecccccc-----
Confidence 9753221100 00111124556666655 4444 4444444433 22221110
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
+.+.. ...+.+|..+|.+++|+|+|++|++++.|+..
T Consensus 219 -------------------------------------~~~~~------~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~ 255 (393)
T d1sq9a_ 219 -------------------------------------YNFES------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 255 (393)
T ss_dssp -------------------------------------EEEEC------CC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred -------------------------------------ccccc------ccccccccceEEEcccccccceeeeecCCCCc
Confidence 00000 01245789999999999999999999988743
Q ss_pred CeEEEEEeecccccCce-------eEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cccc
Q 005140 488 PDISFYSMRTAQHAGRV-------SKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHF 556 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~-------~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~ 556 (712)
..|++||+.++.....+ .....+.+| .|++++|+|+|++|++++. |++|++||+.+++++.+ +|..
T Consensus 256 ~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~---D~~v~vWd~~~g~~~~~l~gH~~ 332 (393)
T d1sq9a_ 256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW---DGKLRFWDVKTKERITTLNMHCD 332 (393)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEECCGG
T ss_pred ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC---CCEEEEEECCCCCEEEEECCcCC
Confidence 35999999765421000 011111233 6899999999999999998 99999999999998875 5555
Q ss_pred cee----eEEECCCCCEEEEEE
Q 005140 557 MAT----DVEWDPTGRYVATAV 574 (712)
Q Consensus 557 ~v~----~~~~spdg~~l~t~s 574 (712)
.|. .++|+|+|..+++++
T Consensus 333 ~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 333 DIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp GCSSGGGCCCBCTTSCBCSSCC
T ss_pred cccCCccEEEECCCCCEEEEcc
Confidence 554 578999988776544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.5e-22 Score=211.44 Aligned_cols=296 Identities=10% Similarity=0.088 Sum_probs=181.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee------eccCCCcccccCCCCCcCCCCcCeEE
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR------DFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
|...|.++++++ ++|+|++.| ++|+|||..+..... ....+..... .+. .+..+.
T Consensus 13 H~~~I~~v~~~~--~~l~S~S~D----------~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 73 (393)
T d1sq9a_ 13 HDADIFSVSACN--SFTVSCSGD----------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-----HVD--VLQAIE 73 (393)
T ss_dssp SSSCEEEEEECS--SEEEEEETT----------SEEEEEESBCCTTCCGGGGEEEEECCTTCEE-----EEE--EEEEEE
T ss_pred ccCccEEEEEeC--CEEEEEECC----------CeEEEEECCCCCCCcccceeEeeeeccCCce-----Eee--eEeeec
Confidence 334599999865 799999999 999999976654211 1111111100 000 011122
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccc----------cccccCeeeEEECCCC-----CeEEEEeecCCCCCCCe
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKK----------SLKVENVMDFSWSPTD-----PIISLFVPELGGGNQPA 389 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~~~ 389 (712)
.++.++.++++++ |+.|++|++......... ..+...+..++|++++ .++++ ++.++.+
T Consensus 74 ~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~dg~i 148 (393)
T d1sq9a_ 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-----TDVKGTT 148 (393)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-----EETTSCE
T ss_pred cCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-----EcCCCcE
Confidence 2220234677777 999999997643221111 1122345666776653 45555 5567777
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 469 (712)
++|.+............ .. ...+ .+.... .....+...+.++
T Consensus 149 ~vw~~~~~~~~~~~~~~-----------~~-~~~~------------------~~~~~~--------~~~~~~~~~~~~v 190 (393)
T d1sq9a_ 149 YIWKFHPFADESNSLTL-----------NW-SPTL------------------ELQGTV--------ESPMTPSQFATSV 190 (393)
T ss_dssp EEEEEESSSSHHHHTTT-----------CC-CCEE------------------EEEEEE--------CCSSSSCCCCCEE
T ss_pred EEEEeecCCcccceeee-----------ee-ccce------------------ecccce--------ecccCCCCcEEEE
Confidence 77665533211100000 00 0000 010000 1122446678999
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
+|+|++ +||+++.|+ .|+|||+.++...........+.+ .+|++++|||+|++|++++.+...+.|++||+.++
T Consensus 191 ~~s~dg-~lasgs~Dg---~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g 266 (393)
T d1sq9a_ 191 DISERG-LIATGFNNG---TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 266 (393)
T ss_dssp EECTTS-EEEEECTTS---EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EECCCC-EEEEEeCCC---cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence 999998 889999999 999999976542111111122223 37999999999999999987222346999999987
Q ss_pred eeeee---------------ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--ccccee----ee
Q 005140 548 ETMAT---------------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFF----QF 605 (712)
Q Consensus 548 ~~~~~---------------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~----~~ 605 (712)
+.+.. +|...|++++|+|+|++|++++. |+.|+|||+. |+++... |.+.|. .+
T Consensus 267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-----D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~ 341 (393)
T d1sq9a_ 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----DGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 341 (393)
T ss_dssp CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC-----CCEEEEEECCCCCEEEEECCcCCcccCCccEE
Confidence 66543 47788999999999999999999 9999999987 6555543 544443 47
Q ss_pred EEecCCCCCCChh
Q 005140 606 LWRPRPPSFLTPE 618 (712)
Q Consensus 606 ~w~p~~~~l~s~~ 618 (712)
+|+|++..+++++
T Consensus 342 ~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 342 AVDEHGDSLAEPG 354 (393)
T ss_dssp CBCTTSCBCSSCC
T ss_pred EECCCCCEEEEcc
Confidence 7888888777654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=2.9e-22 Score=203.29 Aligned_cols=279 Identities=9% Similarity=0.035 Sum_probs=185.7
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee---eeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM---RDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
...|++|+|||+|++||+++.| ++|+|||+.++... ....+|...+. +++|+|
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~D----------g~v~iwd~~~~~~~~~~~~~~~h~~~V~-------------~v~f~~- 66 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWD----------GSLTVYKFDIQAKNVDLLQSLRYKHPLL-------------CCNFID- 66 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETT----------SEEEEEEEETTTTEEEEEEEEECSSCEE-------------EEEEEE-
T ss_pred CCCEEEEEEeCCCCEEEEEECC----------CeEEEEEccCCCcceEEEEecCCCCCEE-------------EEEEeC-
Confidence 3459999999999999999999 99999999776532 23334655553 789998
Q ss_pred CC-CEEEEec-CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 330 KD-KYFAKLG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 330 dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
++ .+|++++ |+.|.+|++...........+.. ......+.+++..+++ ++.++..++| ++........
T Consensus 67 ~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~w--d~~~~~~~~~-- 137 (342)
T d1yfqa_ 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA-----ASWDGLIEVI--DPRNYGDGVI-- 137 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEE-----EETTSEEEEE--CHHHHTTBCE--
T ss_pred CCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccc-----ccccccccee--ecccccccee--
Confidence 64 5788887 99999999986654433322222 2334445556666666 4455554443 2211110000
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec--CCCCceEEEEEeeCCCEEEEEEcC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD--NKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
.. .... .+......+.+.+.+..+++++.+
T Consensus 138 ------------------~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (342)
T d1yfqa_ 138 ------------------AV------------------------------KNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169 (342)
T ss_dssp ------------------EE------------------------------EESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred ------------------ee------------------------------cccccccccceeeeeeeeccCCceeeecCC
Confidence 00 0000 112344556788899999999999
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeC-CCceeEEE-EccCCCeEEEEeccCCCceEEEEECCcceeee-----------
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALF-WSPSGRFIVLAGLKGFNGQLEFYNVDELETMA----------- 551 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~-~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~----------- 551 (712)
+ .|++|++........ ...... .....+.. +++++..+++++. +|.+.+|++.......
T Consensus 170 ~---~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 170 S---QVQWFRLPLCEDDNG--TIEESGLKYQIRDVALLPKEQEGYACSSI---DGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp T---EEEEEESSCCTTCCC--EEEECSCSSCEEEEEECSGGGCEEEEEET---TSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred C---cEEEEecccCcccce--eeeecccccceeeeEeecCCCCEEEeecC---CCeEEEEEecCCcceeeccccceeeee
Confidence 9 999999976543211 111211 22344444 4557788888888 9999999986322110
Q ss_pred ------eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeec-ccceeeeEEecCCCCCCChhhHHHH
Q 005140 552 ------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTL-KDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 552 ------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~-~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
..|...+++++|+|+|++||+|+. |+.|+|||+. ++.+.... ......++|+|+++.|++++.+..+
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-----Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~ 316 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTF 316 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEET-----TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHH
T ss_pred eeccCCCcccccceeEEecCCccEEEEECC-----CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcE
Confidence 134467889999999999999999 9999999987 44555443 3556678899999999988887766
Q ss_pred HH
Q 005140 624 AK 625 (712)
Q Consensus 624 ~~ 625 (712)
+.
T Consensus 317 ~~ 318 (342)
T d1yfqa_ 317 KT 318 (342)
T ss_dssp HH
T ss_pred EE
Confidence 53
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=6.6e-20 Score=182.91 Aligned_cols=270 Identities=13% Similarity=0.092 Sum_probs=193.0
Q ss_pred EEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc
Q 005140 230 TVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD 306 (712)
Q Consensus 230 t~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~-t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~ 306 (712)
+.+.++ |.|||+. +++.+.++... .+..++|||||++|+ +++.+ +.|.+||+.+++.++.+..+..
T Consensus 7 ~~~~~~~v~v~D~~-t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~----------~~i~v~d~~t~~~~~~~~~~~~ 75 (301)
T d1l0qa2 7 ANSESDNISVIDVT-SNKVTATIPVGSNPMGAVISPDGTKVYVANAHS----------NDVSIIDTATNNVIATVPAGSS 75 (301)
T ss_dssp EETTTTEEEEEETT-TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGG----------TEEEEEETTTTEEEEEEECSSS
T ss_pred EECCCCEEEEEECC-CCeEEEEEECCCCceEEEEeCCCCEEEEEECCC----------CEEEEEECCCCceeeeeecccc
Confidence 344555 8899999 88888888765 489999999999885 55666 7999999999999999888766
Q ss_pred ccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 307 EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
.. .+.|++ ++.+++... ++.+.+|+..++...... .......++.|+|++..+++.
T Consensus 76 ~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~~~~~------ 133 (301)
T d1l0qa2 76 PQ--------------GVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYVT------ 133 (301)
T ss_dssp EE--------------EEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEE------
T ss_pred cc--------------cccccc-ccccccccccccceeeecccccceeeeec-cccccceEEEeecCCCeeeee------
Confidence 54 689999 998766555 889999999988766443 233457889999999988763
Q ss_pred CCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC
Q 005140 385 GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 464 (712)
Q Consensus 385 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~ 464 (712)
......+..++..+...+...... .....+.++|++.+++++..+... ..++. .......... .+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~---~~~~ 200 (301)
T d1l0qa2 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMS--------ISVID-TVTNSVIDTV---KVEA 200 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTE--------EEEEE-TTTTEEEEEE---ECSS
T ss_pred eccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccc--------ccccc-ccceeeeecc---cccC
Confidence 222334566676665544433322 223456789999999887765430 12222 1111111222 2256
Q ss_pred ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEE-EeccCCCceEEEE
Q 005140 465 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVL-AGLKGFNGQLEFY 542 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~-~~~~~~dg~v~iw 542 (712)
.+..++|+++++.++++..+.....|++||+.++. .+..+. +..+.+++|||||++|++ ++. ++.|.+|
T Consensus 201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~------~~~~~~~~~~~~~va~spdg~~l~va~~~---~~~i~v~ 271 (301)
T d1l0qa2 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK------ITARIPVGPDPAGIAVTPDGKKVYVALSF---CNTVSVI 271 (301)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE------EEEEEECCSSEEEEEECTTSSEEEEEETT---TTEEEEE
T ss_pred CcceeeccccccccccccccceeeeeeeeecCCCe------EEEEEcCCCCEEEEEEeCCCCEEEEEECC---CCeEEEE
Confidence 67889999999999887765544489999997654 444444 346789999999998854 444 8999999
Q ss_pred ECCcceeeeecc
Q 005140 543 NVDELETMATAE 554 (712)
Q Consensus 543 d~~~~~~~~~~~ 554 (712)
|+.+++++.+..
T Consensus 272 D~~t~~~~~~~~ 283 (301)
T d1l0qa2 272 DTATNTITATMA 283 (301)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 999998887643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.8e-21 Score=188.66 Aligned_cols=262 Identities=9% Similarity=0.143 Sum_probs=180.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.+|+|++ +||++||||+.| ++|+|||+.++++++++.+|...+ .++++ ++++
T Consensus 16 ~~V~c~~--~d~~~l~sgs~D----------g~i~vWd~~~~~~~~~l~~H~~~V---------------~~v~~-~~~~ 67 (293)
T d1p22a2 16 KGVYCLQ--YDDQKIVSGLRD----------NTIKIWDKNTLECKRILTGHTGSV---------------LCLQY-DERV 67 (293)
T ss_dssp CCEEEEE--CCSSEEEEEESS----------SCEEEEESSSCCEEEEECCCSSCE---------------EEEEC-CSSE
T ss_pred CCEEEEE--EcCCEEEEEeCC----------CeEEEEECCCCcEEEEEecCCCCE---------------eeeec-ccce
Confidence 4588765 589999999999 999999999999999999998876 34455 7789
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|++++ |+.|++|++..+.......... .....+.+....+++ +..++...
T Consensus 68 l~s~s~D~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~---------------------- 118 (293)
T d1p22a2 68 IITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRFNNGMMVT-----CSKDRSIA---------------------- 118 (293)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCC--SCEEEEECCTTEEEE-----EETTSCEE----------------------
T ss_pred eecccccccccccccccccccccccccc--cccccccccccceee-----ccccccee----------------------
Confidence 99999 9999999998765543222111 112223333333333 22333333
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
+|++...........+..|...+..+.+. ...+++++.|+ .|++
T Consensus 119 -------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~---~i~~ 162 (293)
T d1p22a2 119 -------------------------------VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR---TIKV 162 (293)
T ss_dssp -------------------------------EEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTS---EEEE
T ss_pred -------------------------------Eeeccccccccccccccccccccccceec--ccccccccCCC---ceee
Confidence 33332222222223344567777666654 56788888998 9999
Q ss_pred EEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEE
Q 005140 493 YSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t 572 (712)
|++.++. .+..+.++......+++++.++++++. ||.|++||+.+...+............+++++.+|++
T Consensus 163 ~d~~~~~------~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 233 (293)
T d1p22a2 163 WNTSTCE------FVRTLNGHKRGIACLQYRDRLVVSGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 233 (293)
T ss_dssp EETTTCC------EEEEEECCSSCEEEEEEETTEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEE
T ss_pred ecCCCCc------EEEEEcccccccccccCCCCeEEEecC---CCEEEEEecccceeeeeecccceeeeeccccceEEEE
Confidence 9997654 555665554444445556789999988 9999999999888777643322223457788899999
Q ss_pred EEccceeccccEEEEEecCc----------eee--eecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 573 AVTSVHEMENGFNIWSFNGK----------LLY--RTLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~g~----------~~~--~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
++. |+.++||++... .+. ..|.+.|++++|+ +.+|+|++.|+.|+
T Consensus 234 g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~ 290 (293)
T d1p22a2 234 GAY-----DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTIL 290 (293)
T ss_dssp EET-----TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEE
T ss_pred EcC-----CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEE
Confidence 999 999999997531 122 2366789999884 56899999887654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=8e-22 Score=207.79 Aligned_cols=304 Identities=10% Similarity=0.052 Sum_probs=180.9
Q ss_pred cCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce--
Q 005140 222 SPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV-- 297 (712)
Q Consensus 222 Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-- 297 (712)
+++.-++++.+.++ |.|||.. +++.+.++... .+..++|||||++|++++.+ +.|++||+.+++.
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~-t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~d----------g~v~~~d~~t~~~~~ 97 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGS-TYEIKTVLDTGYAVHISRLSASGRYLFVIGRD----------GKVNMIDLWMKEPTT 97 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETT-TCCEEEEEECSSCEEEEEECTTSCEEEEEETT----------SEEEEEETTSSSCCE
T ss_pred CCCcEEEEEEcCCCEEEEEECC-CCcEEEEEeCCCCeeEEEECCCCCEEEEEcCC----------CCEEEEEeeCCCceE
Confidence 44444567888888 8899999 99999888544 59999999999999999999 9999999988763
Q ss_pred eeecc---CCCcccccCCCCCcCCCCcCeEEecCCCCCEE-EEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 298 MRDFK---GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF-AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 298 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l-a~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
+..+. .|...+ + ++.||| ||++| +++. ++.|.+||..+++++.....+...+....++|++
T Consensus 98 ~~~i~~~~~~~~~~------------~-s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
T d1qksa2 98 VAEIKIGSEARSIE------------T-SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 163 (432)
T ss_dssp EEEEECCSEEEEEE------------E-CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EEEEecCCCCCCeE------------E-ecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC
Confidence 23332 232222 2 357899 99987 4555 9999999999988776554444444444555555
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
..+++ .++|+|..+++...+.. .+.+++.... .
T Consensus 164 ~~~~v--------------------------------------~~s~dg~~~~vs~~~~~--------~i~~~d~~~~-~ 196 (432)
T d1qksa2 164 RVAAI--------------------------------------LASHYRPEFIVNVKETG--------KILLVDYTDL-N 196 (432)
T ss_dssp CEEEE--------------------------------------EECSSSSEEEEEETTTT--------EEEEEETTCS-S
T ss_pred ceeEE--------------------------------------EECCCCCEEEEEEccCC--------eEEEEEccCC-C
Confidence 44433 23555555544433221 0222222111 1
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC-----C--ceeEEEEccCCC
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-----K--QANALFWSPSGR 525 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-----~--~v~~l~~spdg~ 525 (712)
......+ .+...+..++|+|+|+++++++.++. .+.+++..+.. .+..+.. + ......+...|.
T Consensus 197 ~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~--~v~v~d~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~g~ 267 (432)
T d1qksa2 197 NLKTTEI-SAERFLHDGGLDGSHRYFITAANARN--KLVVIDTKEGK------LVAIEDTGGQTPHPGRGANFVHPTFGP 267 (432)
T ss_dssp EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGT--EEEEEETTTTE------EEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred cceEEEE-cccCccccceECCCCCEEEEeccccc--eEEEeecccce------EEEEeccCccccccCcccceecCCCCc
Confidence 1111222 23567889999999999999988653 78888876543 2222111 1 122233333343
Q ss_pred eEEEEeccCCCceEEEEECCcceeeeeccccceeeEEEC-----------------------------------CCCCEE
Q 005140 526 FIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWD-----------------------------------PTGRYV 570 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~s-----------------------------------pdg~~l 570 (712)
..++... .++.+.+|+....... .+...+....++ |||+.|
T Consensus 268 ~~~~~~l--g~~~v~~~~~~~~~~~--~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~l 343 (432)
T d1qksa2 268 VWATSHM--GDDSVALIGTDPEGHP--DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 343 (432)
T ss_dssp EEEEEBS--SSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred eeccccc--CCceEEeccccccccc--ccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhh
Confidence 3333322 1556666655422110 111112222222 555555
Q ss_pred EEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCC
Q 005140 571 ATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~ 615 (712)
++++. |+.+++|++........+..++.+++|+|+|++++
T Consensus 344 a~~s~-----d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~ 383 (432)
T d1qksa2 344 TGDGS-----DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVW 383 (432)
T ss_dssp CCSSS-----CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEE
T ss_pred ccccc-----CCceEecccccccccCCCCCcEEEeEECCCCCEEE
Confidence 55555 67777777642222223556789999999998774
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=1.8e-18 Score=172.36 Aligned_cols=266 Identities=14% Similarity=0.102 Sum_probs=187.2
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE-Eec-CCeEEEEEcCCceecccccccccC
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-KNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la-~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
++|.|||+.+++.++++....... .++||| ||++|+ ++. ++.|.+||+.++..+.....+ ..
T Consensus 12 ~~v~v~D~~t~~~~~~i~~g~~p~--------------~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~ 75 (301)
T d1l0qa2 12 DNISVIDVTSNKVTATIPVGSNPM--------------GAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SS 75 (301)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEE--------------EEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SS
T ss_pred CEEEEEECCCCeEEEEEECCCCce--------------EEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeeecc-cc
Confidence 899999999999999988765544 689999 999875 444 899999999998877654333 34
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+..++|++++..+++. ......+..++....+........ .....+.|+|+|..+++...... .+
T Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~--------~~ 140 (301)
T d1l0qa2 76 PQGVAVSPDGKQVYVT------NMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDK--------TV 140 (301)
T ss_dssp EEEEEECTTSSEEEEE------ETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTT--------EE
T ss_pred cccccccccccccccc------ccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeecccc--------ce
Confidence 7899999999987763 222345666777666544443322 23345689999999887665432 13
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEc
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWS 521 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~s 521 (712)
.+|+.... ... ..+ .+...+..++++|++.+++++..+.. .+.+|+..... ....+. ......++|+
T Consensus 141 ~~~~~~~~-~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 208 (301)
T d1l0qa2 141 SVINTVTK-AVI--NTV-SVGRSPKGIAVTPDGTKVYVANFDSM--SISVIDTVTNS------VIDTVKVEAAPSGIAVN 208 (301)
T ss_dssp EEEETTTT-EEE--EEE-ECCSSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTE------EEEEEECSSEEEEEEEC
T ss_pred eeeecccc-cee--eec-ccCCCceEEEeeccccceeeeccccc--cccccccccee------eeecccccCCcceeecc
Confidence 34443221 111 222 23566888999999999999887652 66677664332 333333 3356789999
Q ss_pred cCCCeEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCCCCEEE-EEEccceeccccEEEEEec-Cceeeeec
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVA-TAVTSVHEMENGFNIWSFN-GKLLYRTL 598 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~-t~s~~~~~~d~~v~iw~~~-g~~~~~~~ 598 (712)
++|+.+++++.+..++.|.+||+.+++++... ....+.+++|||||++|+ +++. ++.|.+||+. ++++.+..
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~-----~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----CNTVSVIDTATNTITATMA 283 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECC-----CCeEEEEECCCCeEEEEEe
Confidence 99999988765444678999999999888764 346789999999999875 5555 8999999986 55555443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.4e-18 Score=175.93 Aligned_cols=280 Identities=14% Similarity=0.116 Sum_probs=185.2
Q ss_pred cEEEEEecCc-eEEeecccCcceeeeecC----CCeeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEccCCceee
Q 005140 226 TYLATVHRQG-AAVWGGANTFNRLMRYAH----PQVKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVRTGKVMR 299 (712)
Q Consensus 226 ~~lat~~~~~-i~iw~~~~~~~~~~~~~~----~~v~~i~~Spdg~~l~-t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~ 299 (712)
.||++++.++ |.|||+. +.+.+..+.. ..+.+++|||||++|+ +++.+ +.|.+||+.+++.+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~-s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~----------~~v~v~D~~t~~~~~ 70 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS----------ESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT----------TEEEEEETTTCCEEE
T ss_pred eEEEEEcCCCEEEEEECC-CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC----------CeEEEEECCCCcEEE
Confidence 5899999887 8999999 8888877742 2378999999999985 56667 899999999999988
Q ss_pred eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-------------CCeEEEEEcCCceecccccccccCeeeE
Q 005140 300 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-------------KNMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
.+..+.... .+..+..++|+| ++++++.+. +..+.+|+..++..+.... ....+..+
T Consensus 71 ~~~~~~~~~--------~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~ 140 (337)
T d1pbyb_ 71 RIDLSTPEE--------RVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITML 140 (337)
T ss_dssp EEECCBTTE--------EEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCE
T ss_pred EEecCCCcc--------cccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEE
Confidence 887654321 011122589999 999987664 4578889998887665442 33458899
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEE----------E---EE-cccc
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA----------V---KV-DRYT 432 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~----------~---~~-~~~~ 432 (712)
+|+|+|+++++ ++ ... ..|+..+.+........... ....+++++..+. . .. .+..
T Consensus 141 ~~s~dg~~l~~-----~~--~~~--~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T d1pbyb_ 141 AWARDGSKLYG-----LG--RDL--HVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp EECTTSSCEEE-----ES--SSE--EEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred EEcCCCCEEEE-----Ec--CCc--ceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccc
Confidence 99999999987 33 333 34555554433332221110 1111222222111 1 00 0000
Q ss_pred -cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 433 -KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 433 -~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
.........+.+|++. ........+.++...+..++++|++.+++... + .|++||+.++. .+..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~i~v~d~~~~~------~~~~~~ 277 (337)
T d1pbyb_ 211 PADPTAYRTGLLTMDLE--TGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--N---VLESFDLEKNA------SIKRVP 277 (337)
T ss_dssp TTSGGGEEEEEEEEETT--TCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--S---EEEEEETTTTE------EEEEEE
T ss_pred eeeecccCccEEEEEcC--CCcEEEEEecCCCcceEEEEecccceEEEEcc--c---cEEEEECCCCc------EEEEEc
Confidence 0001111123444333 33334444556778888999999999988765 3 89999997655 344433
Q ss_pred -CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 512 -GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 512 -~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.+.+.+++|||||++|++++. ++.|.+||..+++.+.+
T Consensus 278 ~~~~~~~~~~s~dG~~l~v~~~---~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 278 LPHSYYSVNVSTDGSTVWLGGA---LGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESB---SSEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcEEEE
Confidence 456899999999999999987 99999999999888765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=7.6e-19 Score=178.75 Aligned_cols=289 Identities=12% Similarity=0.014 Sum_probs=189.5
Q ss_pred EEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEcc
Q 005140 219 VQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spdg~~l~-t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
++||++|+||++++.++ |.|||+. +.+.+.++. +. .+.+++|||||++|+ ++..+ +.|.+||+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~-t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~----------~~v~~~d~~ 70 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY----------GDIYGIDLD 70 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT----------TEEEEEETT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECC-CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC----------CcEEEEeCc
Confidence 58999999999999988 8899999 888777654 33 488999999999875 45566 899999999
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-------------CCeEEEEEcCCceecccccccc
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-------------KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-------------d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+++.+..+........ .......+.|+| ||++++... ++.+.+|+..++........+.
T Consensus 71 t~~~~~~~~~~~~~~~-------~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 142 (346)
T d1jmxb_ 71 TCKNTFHANLSSVPGE-------VGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP 142 (346)
T ss_dssp TTEEEEEEESCCSTTE-------EEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred cCeeeeeecccccccc-------cCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee
Confidence 9998887765432210 000011589999 999887653 5678889988776554333222
Q ss_pred --cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc-----
Q 005140 361 --ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK----- 433 (712)
Q Consensus 361 --~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~----- 433 (712)
..+..+.+++++..++. + . .+..|+..+.+.+...... .....+.++|++..++........
T Consensus 143 ~~~~~~~~~~~~~~~~~~~-----~---~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (346)
T d1jmxb_ 143 MPRQVYLMRAADDGSLYVA-----G---P--DIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLY 211 (346)
T ss_dssp CCSSCCCEEECTTSCEEEE-----S---S--SEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred ccCceEEEEecCCCEEEEe-----C---C--cceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeee
Confidence 24666777777776654 2 1 2445666555544332211 111223345555543322111100
Q ss_pred ----------c--cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc
Q 005140 434 ----------T--KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA 501 (712)
Q Consensus 434 ----------~--~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~ 501 (712)
. .......+.+|+ ..........+..|...+.++.++|++.++++... + .|.+||+.++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~v~v~d~~~~~-- 283 (346)
T d1jmxb_ 212 TIARFKDDKQDPATADLLYGYLSVD--LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-N---RLAKYDLKQRK-- 283 (346)
T ss_dssp EEEEC-------CCCEEEEEEEEEE--TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-S---EEEEEETTTTE--
T ss_pred eeeeeccCceeEeeccCCceEEEEE--CCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-C---eEEEEECCCCc--
Confidence 0 000011123333 33333333445567888899999999988887665 3 69999987654
Q ss_pred CceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 502 GRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 502 ~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.+..+. ++.+.+++|||||++|++++. ++.|.+||..+++.+.+
T Consensus 284 ----~~~~~~~~~~~~~va~s~DG~~l~v~~~---d~~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 284 ----LIKAANLDHTYYCVAFDKKGDKLYLGGT---FNDLAVFNPDTLEKVKN 328 (346)
T ss_dssp ----EEEEEECSSCCCEEEECSSSSCEEEESB---SSEEEEEETTTTEEEEE
T ss_pred ----EEEEEcCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECccCCEEEE
Confidence 444443 557899999999999999988 99999999999998875
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=3.3e-19 Score=176.81 Aligned_cols=247 Identities=17% Similarity=0.171 Sum_probs=178.5
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecC
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSP 263 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Sp 263 (712)
++..+.|+++.+|+.. . ...+|...|.+++|++++ .+++++.|+ +++|+.. ... ....+.++.+++
T Consensus 24 l~sgs~Dg~v~~Wd~~-~-----~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~-~~~-----~~~~~~~~~~~~ 90 (287)
T d1pgua2 24 LISGSYDGRIMEWSSS-S-----MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGIT-KHE-----FGSQPKVASANN 90 (287)
T ss_dssp TEEEETTSCEEETTTT-E-----EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEE-EEE-----CSSCEEEEEECS
T ss_pred EEEEeCCCeEEEEECC-C-----CCCCCCCCEEEEEecCCC-eEEEEeecccccccccc-ccc-----cccceeeeeecc
Confidence 6788889999999983 2 346888999999999876 467888877 8899987 321 123477899999
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCe
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNM 341 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~ 341 (712)
++..+++++.+ .+.+|+..+++.+..+..+.. ..++++ ++..++.++ ++.
T Consensus 91 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~v~~~~~~~ 142 (287)
T d1pgua2 91 DGFTAVLTNDD-----------DLLILQSFTGDIIKSVRLNSP----------------GSAVSL-SQNYVAVGLEEGNT 142 (287)
T ss_dssp SSEEEEEETTS-----------EEEEEETTTCCEEEEEECSSC----------------EEEEEE-CSSEEEEEETTTSC
T ss_pred CCceEEEeecc-----------cceeeeccceeeeeeccccce----------------eeeeec-cCcceeeeccccce
Confidence 99988887766 688999999998888765532 356778 888877776 467
Q ss_pred EEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 342 ISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
+++|++.......... .+...+.+++|+|++.+|++ ++.++.+++ |+..+.....
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----g~~dg~i~i--~d~~~~~~~~----------------- 198 (287)
T d1pgua2 143 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA-----GDVMGKILL--YDLQSREVKT----------------- 198 (287)
T ss_dssp EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE-----EETTSCEEE--EETTTTEEEE-----------------
T ss_pred eeeeeccccceeeeeeeccCCceeEEEeccCcccccc-----ccccccccc--eeeccccccc-----------------
Confidence 9999988665443322 24456899999999999888 556665554 3333221110
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee----------CCCEEEEEEcCCCCCeE
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP----------KGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp----------~g~~l~~~~~d~~~~~v 490 (712)
..+.+|..+|.+++|+| ++.+|++++.|+ +|
T Consensus 199 ------------------------------------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~---~i 239 (287)
T d1pgua2 199 ------------------------------------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT---NI 239 (287)
T ss_dssp ------------------------------------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS---CE
T ss_pred ------------------------------------ccccccccccceeeecccccccccccCCCCeeEeecCCC---eE
Confidence 01225566677777765 456899999999 99
Q ss_pred EEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++|+++.... .+..+.+| .|++++|+|++ .|++++. ||.|++|++
T Consensus 240 ~iw~~~~~~~-----~~~~~~~h~~~V~~v~~~~~~-~l~s~g~---D~~v~iW~i 286 (287)
T d1pgua2 240 FIYSVKRPMK-----IIKALNAHKDGVNNLLWETPS-TLVSSGA---DACIKRWNV 286 (287)
T ss_dssp EEEESSCTTC-----CEEETTSSTTCEEEEEEEETT-EEEEEET---TSCEEEEEE
T ss_pred EEEECCCCCe-----EEEEeCCCCCCeEEEEECCCC-EEEEEEC---CCeEEEEEE
Confidence 9999965432 45555444 79999999987 5778887 999999985
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=5.1e-18 Score=172.47 Aligned_cols=287 Identities=11% Similarity=0.041 Sum_probs=177.9
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
++||++++||++++.+ ++|.|||+.+++.++++..+.. ... .++|+| ||++++.+
T Consensus 2 ~a~~~~~~~l~~~~~~----------~~v~v~D~~t~~~~~t~~~~~~~~p~-------------~l~~sp-DG~~l~v~ 57 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYP----------NNLHVVDVASDTVYKSCVMPDKFGPG-------------TAMMAP-DNRTAYVL 57 (346)
T ss_dssp CCCCTTCEEEEEEETT----------TEEEEEETTTTEEEEEEECSSCCSSC-------------EEEECT-TSSEEEEE
T ss_pred ccCCCCCcEEEEEcCC----------CEEEEEECCCCCEEEEEEcCCCCCcc-------------eEEECC-CCCEEEEE
Confidence 5799999999999999 9999999999999998865432 111 699999 99987544
Q ss_pred -c-CCeEEEEEcCCceeccccccc------ccCeeeEEECCCCCeEEEEeecCC-----CCCCCeEEEEEecCCccceee
Q 005140 338 -G-KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTDPIISLFVPELG-----GGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 338 -~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~ 404 (712)
. ++.|.+||+.+++.+...... ...+..++|+|||+++++...... .......+.+++..+.+....
T Consensus 58 ~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 137 (346)
T d1jmxb_ 58 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137 (346)
T ss_dssp ETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred ECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeE
Confidence 4 899999999998876543222 123678999999999876321100 011234566676666554333
Q ss_pred eeeeee--cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 405 KNLFSV--SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 405 ~~~~~~--~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
...... ....+.+++++..++. ..+ +.+|++... ... ..+. .......+.++|++..++...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 201 (346)
T d1jmxb_ 138 VRTFPMPRQVYLMRAADDGSLYVA-GPD-----------IYKMDVKTG-KYT--VALP-LRNWNRKGYSAPDVLYFWPHQ 201 (346)
T ss_dssp SEEEECCSSCCCEEECTTSCEEEE-SSS-----------EEEECTTTC-CEE--EEEC-STTCCCTTBCCCBCCCCCCCC
T ss_pred EEeeeccCceEEEEecCCCEEEEe-CCc-----------ceEEEccCC-CEE--EEEe-cCCCccceEEeccccEEEEEe
Confidence 222211 1222345556554433 211 234433211 111 1111 122333444555554432222
Q ss_pred cCCC-----------------------CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 483 GDSP-----------------------RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 483 ~d~~-----------------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
.... ...+.+|++.++... .....-....+..+.++|++.++++.. .+.|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v 274 (346)
T d1jmxb_ 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFADLTELYFTGLRSPKDPNQIYGV----LNRL 274 (346)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECSSCTTEEEEE----ESEE
T ss_pred cCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE---EEEeecccceeEEEEEeCCCCEEEEec----CCeE
Confidence 1110 014566666543321 011111233567889999999988876 5789
Q ss_pred EEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee
Q 005140 540 EFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
.+||..+++.+.... ...+.+++|||||++|++++. |+.|+|||.. ++.+...
T Consensus 275 ~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~-----d~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT-----FNDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB-----SSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECccCCEEEEE
Confidence 999999998887633 357889999999999999998 9999999987 4555443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.78 E-value=3.4e-16 Score=161.12 Aligned_cols=319 Identities=7% Similarity=-0.107 Sum_probs=193.0
Q ss_pred cCCCcccceEEEcCCCcEEEEEec-----C-ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHR-----Q-GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~-----~-~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
..+..++.++++||||+.++.... . .+.+||.. +++.+.++.......++|||||++|++++...........
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~-tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECC-CCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence 456778899999999999877532 2 27799998 8888888765556689999999999988755322222223
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
.+.|.+||+.+++.+..+..+....... .... . .+.|++ +++.++... ++.+.+|+..+.+.. .+.
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~-~~~~----~-~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~ 164 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDV-GPYS----W-MNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDD----QLL 164 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEe-ccCC----C-cEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEE----EEe
Confidence 3789999999999988887665432100 0000 1 478999 998766554 678889998876554 233
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee--e----eecceeEEECcCCCEEEEEEcccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL--F----SVSDCKMYWQSSGDYLAVKVDRYTKT 434 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~----~~~~~~~~~s~~g~~l~~~~~~~~~~ 434 (712)
....++.++|+++.+.+. .+.++.. ..|+............ . ......+.+++++.+++... ++.
T Consensus 165 ~~~~~~~~s~~g~~~~v~----~~~dg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 235 (373)
T d2madh_ 165 SSPTCYHIHPGAPSTFYL----LCAQGGL--AKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-SGK-- 235 (373)
T ss_pred ccceeEEEecCCCcEEEE----EcCCCeE--EEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC-Cce--
Confidence 446788999998876542 3345544 4445444332221111 0 11112234455554444332 221
Q ss_pred cccccccEEEEEEecCCc---------ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC-------CCCeEEEEEeecc
Q 005140 435 KKSTYTGFELFRIKERDI---------PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTA 498 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~---------~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~ 498 (712)
+.++....... ................++++|++..++....++ ....+.+||..++
T Consensus 236 -------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~ 308 (373)
T d2madh_ 236 -------ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred -------EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence 12222211100 000011111123445678888887776554322 1127889998765
Q ss_pred cccCceeEEEEeC-CCceeEEEEccCCCeE--EEEeccCCCceEEEEECCcceeeeec--cccceeeEEECC
Q 005140 499 QHAGRVSKLTTLK-GKQANALFWSPSGRFI--VLAGLKGFNGQLEFYNVDELETMATA--EHFMATDVEWDP 565 (712)
Q Consensus 499 ~~~~~~~~~~~~~-~~~v~~l~~spdg~~l--~~~~~~~~dg~v~iwd~~~~~~~~~~--~~~~v~~~~~sp 565 (712)
. .+..+. ++.+..++|||||+.+ ++++. ++.|++||+.+++.+.+. +....+.+++.+
T Consensus 309 ~------~~~~~~~~~~~~~~a~spDG~~~l~vt~~~---d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 309 Q------TSSQISLGHDVDAISVAQDGGPDLYALSAG---TEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred c------EEEEecCCCCeeEEEECCCCCEEEEEEeCC---CCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence 5 444544 4578899999999964 34444 899999999999998764 334555555544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=2.9e-17 Score=166.06 Aligned_cols=280 Identities=9% Similarity=0.011 Sum_probs=177.0
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE-Eec-CCeEE
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-KNMIS 343 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la-~~~-d~~i~ 343 (712)
+||++++.+ ++|.|||+.+++.++.+..+..... +. .++||| ||++++ +++ ++.|.
T Consensus 2 ~~~vt~~~d----------~~v~v~D~~s~~~~~~i~~~~~~~~------~~-----~i~~sp-Dg~~l~v~~~~~~~v~ 59 (337)
T d1pbyb_ 2 DYILAPARP----------DKLVVIDTEKMAVDKVITIADAGPT------PM-----VPMVAP-GGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETT----------TEEEEEETTTTEEEEEEECTTCTTC------CC-----CEEECT-TSSEEEEEETTTTEEE
T ss_pred eEEEEEcCC----------CEEEEEECCCCeEEEEEECCCCCCC------cc-----EEEECC-CCCEEEEEECCCCeEE
Confidence 589999999 8999999999999998876533210 01 589999 999875 444 89999
Q ss_pred EEEcCCceecccccccc-----cCeeeEEECCCCCeEEEEeecCC-----CCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 344 VYETESFTLIDKKSLKV-----ENVMDFSWSPTDPIISLFVPELG-----GGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~la~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
+||+.+++.+.....+. ..+..++|+|+++++++...... .......+..++............ .....
T Consensus 60 v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~ 138 (337)
T d1pbyb_ 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT 138 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred EEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCce
Confidence 99999998776544432 23568999999999886322100 011345677788777665544432 23344
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE------------
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI------------ 481 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~------------ 481 (712)
.+.|+|+|++++++..+. .+|+..... .. ..+.. ........++|++..+...
T Consensus 139 ~~~~s~dg~~l~~~~~~~-----------~~~d~~~~~-~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (337)
T d1pbyb_ 139 MLAWARDGSKLYGLGRDL-----------HVMDPEAGT-LV--EDKPI-QSWEAETYAQPDVLAVWNQHESSGVMATPFY 203 (337)
T ss_dssp CEEECTTSSCEEEESSSE-----------EEEETTTTE-EE--EEECS-TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCc-----------ceeeeecCc-EE--EEeec-CCccccceecCCcceeeccccccceeeeeee
Confidence 578999999998875542 233322110 00 11111 1111111222222211100
Q ss_pred -E-cCC-------CCCeEEEEEeecccccCceeEEEEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 482 -H-GDS-------PRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 482 -~-~d~-------~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
. .+. ....+.+|++.++.. ...... .......++++|++.+++.+ ++.|.+||+.+++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~d~~~~~~~~ 274 (337)
T d1pbyb_ 204 TARKDIDPADPTAYRTGLLTMDLETGEM----AMREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLESFDLEKNASIK 274 (337)
T ss_dssp EEBTTSCTTSGGGEEEEEEEEETTTCCE----EEEEEEECSSCEEEEEECTTSSEEEEE-----ESEEEEEETTTTEEEE
T ss_pred eeeeccceeeecccCccEEEEEcCCCcE----EEEEecCCCcceEEEEecccceEEEEc-----cccEEEEECCCCcEEE
Confidence 0 000 011467777755432 121111 23356778999999988765 5789999999999887
Q ss_pred ec-cccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee
Q 005140 552 TA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 552 ~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
.. +...+.+++|||||++|++++. ++.|+|||.. ++.+...
T Consensus 275 ~~~~~~~~~~~~~s~dG~~l~v~~~-----~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 275 RVPLPHSYYSVNVSTDGSTVWLGGA-----LGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEECSSCCCEEEECTTSCEEEEESB-----SSEEEEEETTTCCEEEEE
T ss_pred EEcCCCCEEEEEECCCCCEEEEEeC-----CCcEEEEECCCCcEEEEE
Confidence 64 3457889999999999999988 8999999987 4544443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=5.6e-16 Score=156.45 Aligned_cols=288 Identities=10% Similarity=0.037 Sum_probs=180.0
Q ss_pred EEEEECCeeEEEecCCCCCC-CcccccCCCcccceEEEcCCCcEEEEEec-Cc-eEEeecccCcce---eeeecC-CCee
Q 005140 185 FVIRSGTDTEVLWNDARHLK-PEPVYKRSYWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNR---LMRYAH-PQVK 257 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~---~~~~~~-~~v~ 257 (712)
|+....++++.+|+....+. .......|...+.+++|||||++|++++. ++ |.+|++...... .....+ ..+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence 55666778888999843332 22233467788999999999999976664 55 889998722222 122223 3488
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc--CCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK--GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.++|||||++|++++.+. +.|.+|+........... .+.... . .+.++| ++++++
T Consensus 87 ~l~~spDg~~l~v~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~~~~--------~-----~v~~s~-d~~~~~ 143 (333)
T d1ri6a_ 87 HISTDHQGQFVFVGSYNA---------GNVSVTRLEDGLPVGVVDVVEGLDGC--------H-----SANISP-DNRTLW 143 (333)
T ss_dssp EEEECTTSSEEEEEETTT---------TEEEEEEEETTEEEEEEEEECCCTTB--------C-----CCEECT-TSSEEE
T ss_pred EEEEcCCCCEEeecccCC---------CceeeeccccccceecccccCCCccc--------e-----EEEeee-cceeee
Confidence 999999999999987641 689999876665433322 121111 1 578999 999888
Q ss_pred Eec--CCeEEEEEcCCceecccc------cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 336 KLG--KNMISVYETESFTLIDKK------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 336 ~~~--d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
.+. +..|.+|+.......... .........++|++++.++... ........++.+.............
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~ 219 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV----NELNSSVDVWELKDPHGNIECVQTL 219 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE----ETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee----ccccCceEEEeecccccceeeeeee
Confidence 877 778999997754322111 1122346789999999887653 1233344454444333221111110
Q ss_pred --------eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 408 --------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 408 --------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
.......+.++++|+++++...... .+.+|.+...+..........+...+.+++|+|||++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~ 291 (333)
T d1ri6a_ 220 DMMPENFSDTRWAADIHITPDGRHLYACDRTAS--------LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI 291 (333)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--------EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEE
T ss_pred eeeecCCCccccceeEEEecccCceeeecccCC--------eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEE
Confidence 1122344678999998877654421 267888877655544444434456788999999999988
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
+++.+.. .|.+|+++...+ .++.+..+.
T Consensus 292 va~~~~~--~v~v~~id~~tG--~l~~~~~~~ 319 (333)
T d1ri6a_ 292 AAGQKSH--HISVYEIVGEQG--LLHEKGRYA 319 (333)
T ss_dssp EECTTTC--EEEEEEEETTTT--EEEEEEEEE
T ss_pred EEECCCC--eEEEEEEECCCC--cEEEEEecc
Confidence 8766532 899998865432 233444444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=4.3e-15 Score=149.75 Aligned_cols=271 Identities=8% Similarity=0.046 Sum_probs=166.3
Q ss_pred cEEEEEEccCCce---eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceeccccc--
Q 005140 285 VVINIFDVRTGKV---MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKS-- 357 (712)
Q Consensus 285 ~~I~iwd~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~-- 357 (712)
++|++|++.+... ++.+... ..+. .++||| ||++|++++ ++.|.+|++..........
T Consensus 14 ~~I~v~~~~~~~~l~~~~~~~~~-~~v~-------------~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~ 78 (333)
T d1ri6a_ 14 QQIHVWNLNHEGALTLTQVVDVP-GQVQ-------------PMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 78 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEECS-SCCC-------------CEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CcEEEEEEcCCCCeEEEEEEcCC-CCEe-------------EEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeee
Confidence 8999999865433 3333333 2221 589999 999986555 8999999987554222211
Q ss_pred -ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 358 -LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 358 -~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
.....+..++|+|||++|++. +..+..+.++.+....................+.++|+++++++......
T Consensus 79 ~~~~~~p~~l~~spDg~~l~v~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~---- 150 (333)
T d1ri6a_ 79 SALPGSLTHISTDHQGQFVFVG----SYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD---- 150 (333)
T ss_dssp EECSSCCSEEEECTTSSEEEEE----ETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT----
T ss_pred cccCCCceEEEEcCCCCEEeec----ccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc----
Confidence 122347789999999999873 12344455555444332222222222333445678999999888776543
Q ss_pred cccccEEEEEEecCCcceeEE---EecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce-eEEEEeC-
Q 005140 437 STYTGFELFRIKERDIPIEVL---ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV-SKLTTLK- 511 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~---~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~-~~~~~~~- 511 (712)
.+.+|+........... ....+......++|++++.+++....... ...+++.......... ..+....
T Consensus 151 ----~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~ 224 (333)
T d1ri6a_ 151 ----RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS--SVDVWELKDPHGNIECVQTLDMMPE 224 (333)
T ss_dssp ----EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT--EEEEEESSCTTSCCEEEEEEECSCT
T ss_pred ----eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC--ceEEEeecccccceeeeeeeeeeec
Confidence 24566655433221111 11133456788999999999888776542 6777776433221111 1111111
Q ss_pred ----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEEECCCCCEEEEEEccceeccc
Q 005140 512 ----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAVTSVHEMEN 582 (712)
Q Consensus 512 ----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~ 582 (712)
......++++|+|++++.+... ++.+.+|++........ .....+.+++|||||++|++++.. ++
T Consensus 225 ~~~~~~~~~~~~~s~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~----~~ 298 (333)
T d1ri6a_ 225 NFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK----SH 298 (333)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT----TC
T ss_pred CCCccccceeEEEecccCceeeeccc--CCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC----CC
Confidence 1134668999999988877642 67899998774322211 223557789999999998887653 68
Q ss_pred cEEEEEec
Q 005140 583 GFNIWSFN 590 (712)
Q Consensus 583 ~v~iw~~~ 590 (712)
.|.||+++
T Consensus 299 ~v~v~~id 306 (333)
T d1ri6a_ 299 HISVYEIV 306 (333)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 99999875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1e-15 Score=156.20 Aligned_cols=303 Identities=11% Similarity=-0.022 Sum_probs=183.7
Q ss_pred ceEEEcCCCcEEEEEec-----C-ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHR-----Q-GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~-----~-~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
.-.+.||||+.++.... . .+.+||.. +++.+.++.......++|||||++|++.+............+.|++|
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~-tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGE-AGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETT-TTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECC-CCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence 33467999999877642 2 27799999 88888887655666899999999988654310000000111789999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFS 367 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 367 (712)
|+.+++.+..+..+..... ..+.....+.|++ ++++++... +..+.+|+..++..+......... . ..
T Consensus 84 D~~t~~~~~~~~~~~~~~~------~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 154 (355)
T d2bbkh_ 84 DPVTLLPTADIELPDAPRF------LVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-H-IF 154 (355)
T ss_dssp CTTTCCEEEEEEETTCCCC------CBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-E-EE
T ss_pred ECCCCCEEEEEecCCccee------ecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc-e-Ee
Confidence 9999998887765433220 0000011489999 999877654 678999999887765432211100 0 00
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
|. .....+.++++|+.+++...+.. ...++..
T Consensus 155 --~~--------------------------------------~~~~~~~~~~dg~~~~v~~~~~~--------~~~~~~~ 186 (355)
T d2bbkh_ 155 --PT--------------------------------------APDTFFMHCRDGSLAKVAFGTEG--------TPEITHT 186 (355)
T ss_dssp --EE--------------------------------------ETTEEEEEETTSCEEEEECCSSS--------CCEEEEC
T ss_pred --ec--------------------------------------CCcceEEEcCCCCEEEEEecCCC--------eEEEEec
Confidence 00 00001123444444443322211 0111111
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC------------Cce
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG------------KQA 515 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------------~~v 515 (712)
... ...+...+....+++++..+++++.++ .+++|++..+... .+..... ...
T Consensus 187 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~ 251 (355)
T d2bbkh_ 187 EVF--------HPEDEFLINHPAYSQKAGRLVWPTYTG---KIHQIDLSSGDAK----FLPAVEALTEAERADGWRPGGW 251 (355)
T ss_dssp CCC--------SCTTSCBCSCCEEETTTTEEEEEBTTS---EEEEEECTTSSCE----ECCCEESSCHHHHHTTEEECSS
T ss_pred ccc--------cceecceeeeccccCCCCeEEEecCCC---eEEEEecCCCcEE----EEeccCCcccceEeeeeeccce
Confidence 100 012234455567888888888888888 8999998654321 1111111 123
Q ss_pred eEEEEccCCCeEEEEeccC-------CCceEEEEECCcceeeeec-cccceeeEEECCCCCE--EEEEEccceeccccEE
Q 005140 516 NALFWSPSGRFIVLAGLKG-------FNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRY--VATAVTSVHEMENGFN 585 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~-------~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~--l~t~s~~~~~~d~~v~ 585 (712)
..++++|+|..++...... ....|.+||..+++.+.+. ....+.+++|||||+. ++++.. |+.|+
T Consensus 252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~-----d~~i~ 326 (355)
T d2bbkh_ 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG-----DKTLY 326 (355)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-----TTEEE
T ss_pred EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECC-----CCEEE
Confidence 4589999999988765421 1357999999998887653 3456789999999984 344445 89999
Q ss_pred EEEec-Cceeeee
Q 005140 586 IWSFN-GKLLYRT 597 (712)
Q Consensus 586 iw~~~-g~~~~~~ 597 (712)
|||.. |+.+...
T Consensus 327 v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 327 IHDAESGEELRSV 339 (355)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 99986 6666655
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.70 E-value=1.8e-14 Score=147.92 Aligned_cols=292 Identities=10% Similarity=-0.036 Sum_probs=180.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
..+.++++||||+.++...... ....+.|++||..+++.+..+..+... .+.||| ||++
T Consensus 21 ~p~~~~a~spdg~~~~~~~~~~-----~~~~~~v~v~D~~tg~~~~~~~~~~~~---------------~~a~Sp-DG~~ 79 (373)
T d2madh_ 21 GPTNDEAPGADGRRSYINLPAH-----HSAIIQQWVLDAGSGSILGHVNGGFLP---------------NPVAAH-SGSE 79 (373)
T ss_pred CCccccccCCCCCEEEEEcccc-----cCCCceEEEEECCCCCEEEEEeCCCCc---------------cEEEcC-CCCE
Confidence 3488999999999988764321 011157999999999999988766433 489999 9999
Q ss_pred EEEec-----------CCeEEEEEcCCceeccccccccc-------CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 334 FAKLG-----------KNMISVYETESFTLIDKKSLKVE-------NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 334 la~~~-----------d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
|+++. ++.|.+||+.+++.+.....+.. ....+.|+|+++.++++. .+....+.+++
T Consensus 80 l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-----~~~~~~~~~~~ 154 (373)
T d2madh_ 80 FALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ-----FAAGPAVGLVV 154 (373)
T ss_pred EEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE-----EcCCCceEEee
Confidence 98764 47799999999887654433322 135678899988877632 22233444555
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEE-EEcccccccccccccEEEEEEecCCcceeEEE-e--cCCCCceEEEEE
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAV-KVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-L--DNKNDKIIAFAW 471 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l--~~h~~~v~~~~~ 471 (712)
....+...... ....+.++|+|+.+++ ...++. +.+|+............ . .++......+.+
T Consensus 155 ~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T d2madh_ 155 QGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGG---------LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred ccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCe---------EEEEEcCCceeeEEEeeeccccCccceeeeEEE
Confidence 54443332222 1234568899987654 444443 45565543222111110 1 011222334555
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC------------CCceeEEEEccCCCeEEEEeccC-----
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------------GKQANALFWSPSGRFIVLAGLKG----- 534 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~~~~~~~----- 534 (712)
++++.++ ..+.++ .+.+|+....... .+.... ......++++|++..++......
T Consensus 222 ~~~~~~~-~~~~~~---~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 293 (373)
T d2madh_ 222 NKSGRIV-WPVYSG---KILQADISAAGAT----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred CCCceEE-EecCCc---eEEEEEcCCCeEE----EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEe
Confidence 5555444 344455 6778877543211 111111 11234577888887766543211
Q ss_pred --CCceEEEEECCcceeeeec-cccceeeEEECCCCCEE--EEEEccceeccccEEEEEec-Cceeeee
Q 005140 535 --FNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYV--ATAVTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 535 --~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l--~t~s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
.++.+.+||..+++.+... +...+.+++|||||+++ ++++. |+.|+|||.. |+.+...
T Consensus 294 ~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~-----d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 294 HAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG-----TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCC-----CCeEEEEECCCCCEEEEE
Confidence 2678999999998887763 44678899999999954 45566 8999999987 6666655
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.7e-17 Score=129.45 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=72.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.+ +.++.|+.||++||||||+|.+.++|.+|++.|||+.++++
T Consensus 8 ~~~tlfV~nLp~------~~t~~~l~~~F~~~G~v~~--v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 79 (93)
T d1x5ua1 8 QDATVYVGGLDE------KVSEPLLWELFLQAGPVVN--THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 79 (93)
T ss_dssp TTTEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHHHhCCccc--cceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence 346999999997 4448999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.++|....
T Consensus 80 -~l~V~~A~ 87 (93)
T d1x5ua1 80 -PIRVNKAS 87 (93)
T ss_dssp -BCEEEETT
T ss_pred -EEEEEEcC
Confidence 78876643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=2e-15 Score=153.99 Aligned_cols=292 Identities=10% Similarity=0.092 Sum_probs=174.9
Q ss_pred CCCCCceEEEEE----CCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEe----------cCc-eEEeecc
Q 005140 178 DEKARDQFVIRS----GTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVH----------RQG-AAVWGGA 242 (712)
Q Consensus 178 ~~~~~~~~~~~~----~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~----------~~~-i~iw~~~ 242 (712)
.|+++..|+... ....+.+|+. ..++.+..+..+.. ..++|||||++|++.+ .++ |.+||..
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~-~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCCEEEEEecccCCCcCeEEEEEC-CCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 467776666542 2456778887 45666556655443 4699999999888754 345 8899999
Q ss_pred cCcceeeeecC---------CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 243 NTFNRLMRYAH---------PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 243 ~~~~~~~~~~~---------~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
+.+.+..+.. .....++|+|+|+++++++... ...+.+|+..+++.+..+..+......
T Consensus 87 -t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (355)
T d2bbkh_ 87 -TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP--------APAVGVVDLEGKAFKRMLDVPDCYHIF--- 154 (355)
T ss_dssp -TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--------SCEEEEEETTTTEEEEEEECCSEEEEE---
T ss_pred -CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC--------CceeeeeecCCCcEeeEEecCCcceEe---
Confidence 7776665421 1246789999999988876441 167999999999988877655432100
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
..+- -..+.+++ |++.++... ++.+.+++....... +...+....+++++..+++ ++.++ ++
T Consensus 155 --~~~~-~~~~~~~~-dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~--~~ 218 (355)
T d2bbkh_ 155 --PTAP-DTFFMHCR-DGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLINHPAYSQKAGRLVW-----PTYTG--KI 218 (355)
T ss_dssp --EEET-TEEEEEET-TSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCSCCEEETTTTEEEE-----EBTTS--EE
T ss_pred --ecCC-cceEEEcC-CCCEEEEEecCCCeEEEEecccccce-----ecceeeeccccCCCCeEEE-----ecCCC--eE
Confidence 0000 00356777 777666544 556666665543322 2223455677777777776 33443 45
Q ss_pred EEEecCCccce--eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE
Q 005140 392 SLVQIPSKEEL--RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 392 ~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 469 (712)
++++....... ..............+.| .....+
T Consensus 219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------------------------------------------~~~~~~ 254 (355)
T d2bbkh_ 219 HQIDLSSGDAKFLPAVEALTEAERADGWRP--------------------------------------------GGWQQV 254 (355)
T ss_dssp EEEECTTSSCEECCCEESSCHHHHHTTEEE--------------------------------------------CSSSCE
T ss_pred EEEecCCCcEEEEeccCCcccceEeeeeec--------------------------------------------cceEEE
Confidence 55554433211 11110000000000111 122336
Q ss_pred EEeeCCCEEEEEEcCCC-------CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeE--EEEeccCCCceE
Q 005140 470 AWEPKGHRFAVIHGDSP-------RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFI--VLAGLKGFNGQL 539 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~-------~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l--~~~~~~~~dg~v 539 (712)
+++|++..+++...++. ...|.+||+.++. .+..+. ++.+.+++|||||+.+ +++.. ++.|
T Consensus 255 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~------~~~~~~~~~~~~~~a~spDG~~~l~v~~~~---d~~i 325 (355)
T d2bbkh_ 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE------RLAKFEMGHEIDSINVSQDEKPLLYALSTG---DKTL 325 (355)
T ss_dssp EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------EEEEEEEEEEECEEEECCSSSCEEEEEETT---TTEE
T ss_pred EEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc------EEEEecCCCCEEEEEEcCCCCeEEEEEECC---CCEE
Confidence 67777777766654321 1368999987654 344443 3467899999999853 33444 8999
Q ss_pred EEEECCcceeeeec
Q 005140 540 EFYNVDELETMATA 553 (712)
Q Consensus 540 ~iwd~~~~~~~~~~ 553 (712)
.+||+.+++.+.+.
T Consensus 326 ~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 326 YIHDAESGEELRSV 339 (355)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 99999999988764
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.2e-17 Score=128.59 Aligned_cols=78 Identities=31% Similarity=0.482 Sum_probs=71.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.+ |.++.|+.+|+++|||||+|.+.++|..|++.|||..++++
T Consensus 6 ~s~tlfV~nlp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr 77 (93)
T d1h2vz_ 6 KSCTLYVGNLSF------YTTEEQIYELFSKSGDIKK--IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 77 (93)
T ss_dssp TCCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHCCcce--eccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 578999999997 4448999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 78 -~i~V~~ 83 (93)
T d1h2vz_ 78 -IIRTDW 83 (93)
T ss_dssp -ECEEEE
T ss_pred -EEEEEE
Confidence 788765
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.69 E-value=3.3e-17 Score=126.94 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.++++|++|++.|||+.++++
T Consensus 2 ~t~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~- 72 (82)
T d1b7fa1 2 NTNLIVNYLPQ------DMTDRELYALFRAIGPINT--CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK- 72 (82)
T ss_dssp CSEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHHhCCcce--eeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCE-
Confidence 46899999997 5558999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.++|..
T Consensus 73 ~l~v~~ 78 (82)
T d1b7fa1 73 RLKVSY 78 (82)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 777765
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.8e-17 Score=126.49 Aligned_cols=77 Identities=30% Similarity=0.325 Sum_probs=69.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc-
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA- 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~- 137 (712)
+++|||+|||. ...+++|+++|++||+|.+ +.++.|+.+|++||||||+|.++++|.+|++.|||..++|+
T Consensus 6 ~~~lfV~nLp~------~~te~~L~~~F~~~G~v~~--v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~ 77 (85)
T d1fxla2 6 DANLYVSGLPK------TMTQKELEQLFSQYGRIIT--SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 77 (85)
T ss_dssp TCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHHhCCccc--cccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCC
Confidence 56899999997 4558999999999999999 99999999999999999999999999999999999999874
Q ss_pred eEEEEE
Q 005140 138 HIFAVN 143 (712)
Q Consensus 138 ~~l~v~ 143 (712)
+.+.|.
T Consensus 78 ~~i~V~ 83 (85)
T d1fxla2 78 EPITVK 83 (85)
T ss_dssp SCCEEE
T ss_pred EEEEEE
Confidence 356654
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=1.2e-17 Score=126.68 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=67.8
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
|+|||+|||. +..+++|+++|++||.|.+ +.||+|+.||++||||||+|.++++|.+|++ +|+..++++ .
T Consensus 1 cklfV~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr-~ 70 (77)
T d1uawa_ 1 CKMFIGGLSW------QTTQEGLREYFGQFGEVKE--CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSK-T 70 (77)
T ss_dssp CCEEEESCCS------SCCSHHHHHHHTTTSCCCC--EEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCSSC-C
T ss_pred CEEEEeCCCC------cCCHHHHHHHHHHhCCcce--eeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEECCe-E
Confidence 6899999997 4558889999999999999 9999999999999999999999999999997 799999986 6
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 71 i~V~~ 75 (77)
T d1uawa_ 71 IDPKV 75 (77)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 66653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.68 E-value=8.1e-15 Score=155.89 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=100.9
Q ss_pred eEEEcCCCcEEEEEecCceEEeecccCcceeeeec------C-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 218 FVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA------H-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~------~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
.+.|+++|+++... .+++.+||.. +++....+. + ..|.++.|||||++||+++.... .-+....+.+.||
T Consensus 21 ~~~W~~d~~~~~~~-~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~-~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISDHEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-QWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSSSEEEEES-SSCEEEEETT-TCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE-CSSSCEEEEEEEE
T ss_pred CCEeCCCCEEEEEc-CCcEEEEECC-CCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc-eeeeccCceEEEE
Confidence 57899999987643 4458999999 665543332 2 34999999999999998864210 0011122688999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc------------
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL------------ 358 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~------------ 358 (712)
|+.+++. ..+..+...+. .+.||| ||++||...++.+.+|+..++........
T Consensus 98 d~~~~~~-~~l~~~~~~~~-------------~~~~SP-DG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d 162 (470)
T d2bgra1 98 DLNKRQL-ITEERIPNNTQ-------------WVTWSP-VGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD 162 (470)
T ss_dssp ETTTTEE-CCSSCCCTTEE-------------EEEECS-STTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred ECCCCcc-cccccCCcccc-------------cccccc-CcceeeEeecccceEEECCCCceeeeeeccCCCcccccccc
Confidence 9988764 45665554432 589999 99999999999999999987764432211
Q ss_pred ------cccCeeeEEECCCCCeEEEEe
Q 005140 359 ------KVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 359 ------~~~~v~~~~~sp~~~~la~~~ 379 (712)
.......+.|||||++|++..
T Consensus 163 ~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 163 WVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred eeeeeeecCCccccEECCCCCccceeE
Confidence 112245688999999999854
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.6e-17 Score=126.28 Aligned_cols=75 Identities=27% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.+.++|.+|++.|||+.++++
T Consensus 9 ~~~l~V~nL~~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr- 79 (83)
T d2cqca1 9 NCCLGVFGLSL------YTTERDLREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR- 79 (83)
T ss_dssp GGCEEEESCCS------SCCHHHHHHHHHTTSCEEE--EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHHhCCCcc--ccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 46899999997 4458999999999999999 99999999999999999999999999999999999999986
Q ss_pred EEEE
Q 005140 139 IFAV 142 (712)
Q Consensus 139 ~l~v 142 (712)
.++|
T Consensus 80 ~i~V 83 (83)
T d2cqca1 80 RIRV 83 (83)
T ss_dssp EEEE
T ss_pred EeEC
Confidence 6554
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.68 E-value=5.8e-17 Score=126.93 Aligned_cols=77 Identities=31% Similarity=0.451 Sum_probs=70.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.+.++|++|+..|||..++++
T Consensus 7 ~~~l~V~nL~~------~~t~~~l~~~F~~~G~i~~--v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~- 77 (88)
T d1rk8a_ 7 GWILFVTSIHE------EAQEDEIQEKFCDYGEIKN--IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ- 77 (88)
T ss_dssp CEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHHcCCccc--ccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCE-
Confidence 56999999997 4458999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 78 ~l~V~~ 83 (88)
T d1rk8a_ 78 TIQVDW 83 (88)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 777765
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5e-17 Score=124.82 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=69.4
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
.|||+|||. +..+++|+++|++||+|.+ +.|+.|+.||+++|||||+|.++++|.+|++.|||+.++++ .+
T Consensus 2 slfV~nL~~------~~te~~l~~~F~~~G~i~~--v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr-~i 72 (80)
T d1cvja1 2 SLYVGDLHP------DVTEAMLYEKFSPAGPILS--IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK-PV 72 (80)
T ss_dssp EEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTE-EC
T ss_pred EEEEeCCCC------cCCHHHHHHHHHHhCCEeE--EEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCE-EE
Confidence 599999997 4558999999999999999 99999999999999999999999999999999999999985 78
Q ss_pred EEEe
Q 005140 141 AVNM 144 (712)
Q Consensus 141 ~v~~ 144 (712)
+|..
T Consensus 73 ~v~~ 76 (80)
T d1cvja1 73 RIMW 76 (80)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5.2e-17 Score=127.95 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+..|+++|++||.|.. +.|+.|+.+|++||||||+|.+.++|.+|++.|||+.++++
T Consensus 7 ~~~~i~V~nLp~------~~t~~~l~~~f~~~G~v~~--v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 78 (90)
T d2cq0a1 7 DNATIRVTNLSE------DTRETDLQELFRPFGSISR--IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 78 (90)
T ss_dssp SSEEEEEESCCT------TCCHHHHHTTSTTTCCEEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHhccccc--ccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCE
Confidence 346899999997 4448899999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++|...
T Consensus 79 -~i~v~~a 85 (90)
T d2cq0a1 79 -ILNVEWA 85 (90)
T ss_dssp -ECEEEES
T ss_pred -EEEEEee
Confidence 7777653
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.67 E-value=1.1e-16 Score=124.53 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-c
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-A 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~ 137 (712)
++.|||+|||. ...++.|+++|++||+|.. +.+++|+.+|++||||||+|.++++|.+|++.|||..+.+ .
T Consensus 6 ~t~lfV~nlp~------~~te~~l~~~F~~~G~i~~--~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 77 (85)
T d1b7fa2 6 DTNLYVTNLPR------TITDDQLDTIFGKYGSIVQ--KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS 77 (85)
T ss_dssp TCEEEEESCCT------TCCHHHHHHHHTSSSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhhCCEee--eeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 45799999997 4559999999999999999 9999999999999999999999999999999999998875 3
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
+++.|..
T Consensus 78 ~~l~V~~ 84 (85)
T d1b7fa2 78 QPLSVRL 84 (85)
T ss_dssp SCCEEEE
T ss_pred eEEEEEE
Confidence 5677653
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.2e-17 Score=126.68 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=70.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.+|||+|||. ...+++|+++|++||+|.+ +.|++|+.||++||||||+|.++++|..|++.|||+.++++ .
T Consensus 2 ~rlfV~nlp~------~~te~~l~~~F~~~G~v~~--v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~-~ 72 (85)
T d2u2fa_ 2 HKLFIGGLPN------YLNDDQVKELLTSFGPLKA--FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK-K 72 (85)
T ss_dssp CCEEEETCCS------SCCSHHHHHHHTSSSCEEE--EEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSS-C
T ss_pred CEEEEECCCC------CCCHHHHHHHHHhcCccce--EEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCE-E
Confidence 3699999997 4448899999999999999 99999999999999999999999999999999999999986 7
Q ss_pred EEEEeec
Q 005140 140 FAVNMFD 146 (712)
Q Consensus 140 l~v~~~~ 146 (712)
+.|....
T Consensus 73 l~V~~A~ 79 (85)
T d2u2fa_ 73 LLVQRAS 79 (85)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 7776643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.67 E-value=6.3e-14 Score=148.86 Aligned_cols=345 Identities=10% Similarity=0.093 Sum_probs=188.8
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcc-----cccCCCcccceEEEcCCCcEEEEEec---------Cc-eEE
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEP-----VYKRSYWTESFVQWSPLGTYLATVHR---------QG-AAV 238 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~v~~v~~Spdg~~lat~~~---------~~-i~i 238 (712)
.|+.+. +|+. ..++.+.+|+. ..++... .+..|...+.+++|||||++||+++. .+ +.|
T Consensus 23 ~W~~d~----~~~~-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 23 RWISDH----EYLY-KQENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp EECSSS----EEEE-ESSSCEEEEET-TTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred EeCCCC----EEEE-EcCCcEEEEEC-CCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 466543 4554 45667789998 3444332 44566678999999999999999864 23 569
Q ss_pred eecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc-CCCCC-
Q 005140 239 WGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV-GGTGG- 315 (712)
Q Consensus 239 w~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~-~~~~~- 315 (712)
||+. +++......++ .+..+.|||||++||+.... .+.+|++.+|...+....+...... +....
T Consensus 97 ~d~~-~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~-----------~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~ 164 (470)
T d2bgra1 97 YDLN-KRQLITEERIPNNTQWVTWSPVGHKLAYVWNN-----------DIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (470)
T ss_dssp EETT-TTEECCSSCCCTTEEEEEECSSTTCEEEEETT-----------EEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred EECC-CCcccccccCCccccccccccCcceeeEeecc-----------cceEEECCCCceeeeeeccCCCccccccccee
Confidence 9999 55543333344 49999999999999997654 7999999888876655433221100 00000
Q ss_pred ----cCCCCcCeEEecCCCCCEEEEec-C-CeEE-----------------------------------EEEcCCceecc
Q 005140 316 ----VAGVSWPVFRWGGGKDKYFAKLG-K-NMIS-----------------------------------VYETESFTLID 354 (712)
Q Consensus 316 ----~~~~~~~~~~~s~~dg~~la~~~-d-~~i~-----------------------------------iwd~~~~~~~~ 354 (712)
..+. -..+.||| ||++||+.. | ..+. +|++.++....
T Consensus 165 ~~~~~~~~-~~~~~wSP-DGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~ 242 (470)
T d2bgra1 165 YEEEVFSA-YSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (470)
T ss_dssp HHHHTSSS-SBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSS
T ss_pred eeeeecCC-ccccEECC-CCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceee
Confidence 0000 01478999 999999876 3 2232 23322221111
Q ss_pred cccc-----------cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee---ee--------eeecc
Q 005140 355 KKSL-----------KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK---NL--------FSVSD 412 (712)
Q Consensus 355 ~~~~-----------~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~--------~~~~~ 412 (712)
.... ....+..+.|.+++..++.+.... .......++.++..+....... .. .....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~-~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~ 321 (470)
T d2bgra1 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI-QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (470)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS-TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred eccccccCCccccCCCCceEEEEEEcCCCceeEEEeecc-CCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccC
Confidence 0000 001145678888887666543322 1122334445554443211110 00 00011
Q ss_pred eeEEECcCCCEE-EEEE-cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CC-CCC
Q 005140 413 CKMYWQSSGDYL-AVKV-DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DS-PRP 488 (712)
Q Consensus 413 ~~~~~s~~g~~l-~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~-~~~ 488 (712)
....|.+++... +..+ .++. ..||.+...+... ..+..+...|..+ ++++++.+++.+. ++ ...
T Consensus 322 ~~~~~~~~~~~~~~~~s~~dg~---------~~ly~~~~~g~~~--~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~ 389 (470)
T d2bgra1 322 SEPHFTLDGNSFYKIISNEEGY---------RHICYFQIDKKDC--TFITKGTWEVIGI-EALTSDYLYYISNEYKGMPG 389 (470)
T ss_dssp CCCEECTTSSEEEEEEECTTSC---------EEEEEEETTCSCC--EESCCSSSCEEEE-EEECSSEEEEEESCGGGCTT
T ss_pred CCceeeecCCCcEEEEeccCcC---------ceeEEEeccCCce--eeeccCCeeEEEE-EEECCCEEEEEEecCCCCcc
Confidence 223455555543 3322 2222 4677766554443 3444445667765 6667777665543 21 111
Q ss_pred eEEEEEeecccccCceeEEE-EeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 489 DISFYSMRTAQHAGRVSKLT-TLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~-~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.-.||.+.-... .+..++. .+..+ .+..++|||||++++....+...-.+.+|+..+++.+..
T Consensus 390 ~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~ 455 (470)
T d2bgra1 390 GRNLYKIQLSDY-TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (470)
T ss_dssp CBEEEEEETTCT-TCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred eEEEEEEECCCC-CceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 335666642211 1112221 11222 478999999999988766543345688898888877654
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.7e-17 Score=127.89 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=71.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||+|.+ +.++.|+.+|++||||||+|.++++|.+|++.+||..++++
T Consensus 5 ~~tlfV~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~- 75 (89)
T d2cqba1 5 KRVLYVGGLAE------EVDDKVLHAAFIPFGDITD--IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR- 75 (89)
T ss_dssp CSCEEEESCCS------SCCHHHHHHHHTTTSCCCC--EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE-
T ss_pred CcEEEEeCCCC------cCCHHHHHHHHhhCCeEEe--cccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 46899999997 4458999999999999999 99999999999999999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 76 ~l~v~~a 82 (89)
T d2cqba1 76 TIRVNLA 82 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 8888764
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=1.4e-16 Score=128.11 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=72.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.|+.|+.||+++|||||+|.+.++|.+|++.|||+.++++
T Consensus 8 ~~~lfV~nL~~------~~t~~~l~~~F~~~g~v~~--v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr- 78 (99)
T d1whwa_ 8 SGRLFVRNLSY------TSSEEDLEKLFSAYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR- 78 (99)
T ss_dssp CEEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC-
T ss_pred CCEEEEECCCC------cCCHHHHHHHHHhcCCcee--eeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 56899999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 79 ~i~V~~a~ 86 (99)
T d1whwa_ 79 MLHVLPST 86 (99)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 78887644
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=1.4e-16 Score=121.56 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=68.9
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||+|||. +..+++|+++|++||.|.+ +.|+.|+ +|+++|||||+|.++++|.+|++.|||..++++ .+
T Consensus 2 rl~V~nLp~------~~~~~~l~~~F~~~G~v~~--~~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~-~l 71 (78)
T d1no8a_ 2 KLLVSNLDF------GVSDADIQELFAEFGTLKK--AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR-PM 71 (78)
T ss_dssp EEEEESCCT------TCCHHHHHHHHHHHSCEEE--EEESCSS-CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTE-EC
T ss_pred EEEEECCCC------CCCHHHHHHHHHHhCCCeE--EEEEEee-ccccceeEEEEECCHHHHHHHHHHhCCCEECCE-EE
Confidence 599999997 5559999999999999999 9999998 999999999999999999999999999999985 77
Q ss_pred EEEee
Q 005140 141 AVNMF 145 (712)
Q Consensus 141 ~v~~~ 145 (712)
.|...
T Consensus 72 ~V~~a 76 (78)
T d1no8a_ 72 NIQLV 76 (78)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.2e-16 Score=122.33 Aligned_cols=76 Identities=30% Similarity=0.500 Sum_probs=70.0
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+.+|+++|++||.|.+ +.++.|..+|+++|||||+|.++++|++|++.|||..++++ .
T Consensus 3 t~l~V~nLp~------~~te~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~ 73 (82)
T d1fxla1 3 TNLIVNYLPQ------NMTQEEFRSLFGSIGEIES--CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-T 73 (82)
T ss_dssp SEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-E
T ss_pred CEEEEECCCC------CCCHHHHHHHHHHhCCccc--ccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCE-E
Confidence 5799999997 5558999999999999999 99999998999999999999999999999999999999985 7
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 74 l~v~~ 78 (82)
T d1fxla1 74 IKVSY 78 (82)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 77765
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.3e-16 Score=120.44 Aligned_cols=73 Identities=15% Similarity=0.353 Sum_probs=66.2
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
.|||+|||. +..+++|+++|++||.|.. +.++.|+.||+++|||||+|.++++|.+|++ +++..++|+ .+
T Consensus 1 klfV~nl~~------~~te~~l~~~F~~~G~i~~--~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr-~i 70 (75)
T d1hd0a_ 1 KMFIGGLSW------DTTKKDLKDYFSKFGEVVD--CTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNGK-VI 70 (75)
T ss_dssp CEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBTTB-CC
T ss_pred CEEEeCCCC------cCCHHHHHHHHHhhccccc--cccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEECCC-EE
Confidence 489999997 5559999999999999999 9999999999999999999999999999997 799999885 66
Q ss_pred EEE
Q 005140 141 AVN 143 (712)
Q Consensus 141 ~v~ 143 (712)
.|.
T Consensus 71 ~V~ 73 (75)
T d1hd0a_ 71 DPK 73 (75)
T ss_dssp EEC
T ss_pred Eee
Confidence 654
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.6e-16 Score=121.65 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=68.3
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.+|||+|||. +..+++|+++|++||.|.. +.|++|+.||++||||||+|.++++|.+|++ ++|..++|+ .
T Consensus 7 ~~lfV~nlp~------~~te~~l~~~F~~~G~i~~--v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i~Gr-~ 76 (84)
T d1l3ka1 7 RKLFIGGLSF------ETTDESLRSHFEQWGTLTD--CVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGR-V 76 (84)
T ss_dssp GEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTE-E
T ss_pred cEEEEECCCC------CCCHHHHHHHHHhhccccc--eeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEECCE-E
Confidence 4899999998 5559999999999999999 9999999999999999999999999999997 699999885 7
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 77 i~V~~ 81 (84)
T d1l3ka1 77 VEPKR 81 (84)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 77765
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.4e-16 Score=123.37 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.+.|||+|||. +..+++|+++|++||.|.+ +.|++|+.||++||||||+|.++++|.+|++.+ ..++|
T Consensus 7 ~~~~lfV~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~--~~l~G- 75 (90)
T d2cqga1 7 KTSDLIVLGLPW------KTTEQDLKEYFSTFGEVLM--VQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR--HMIDG- 75 (90)
T ss_dssp CCCCEEEESCCS------SCCHHHHHHHHGGGSCEEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHHHSC--EEETT-
T ss_pred CCCeEEEECCCC------CCCHHHHHHHHHhhcccce--eeeccCCCCcccCCEEEEEECCHHHHHHHHhcC--CccCC-
Confidence 456899999997 5558999999999999999 999999999999999999999999999999854 46777
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+.+.|...
T Consensus 76 r~i~v~~a 83 (90)
T d2cqga1 76 RWCDCKLP 83 (90)
T ss_dssp EEEEEECC
T ss_pred EEeEEEeC
Confidence 47777654
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=3.4e-16 Score=124.06 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=70.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC-CCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP-ETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~-~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~ 136 (712)
+++|||+|||. +..+++|+++|++||.|.. +.||.|+ .+|++||||||+|.+.++|.+|++.| ||..++|
T Consensus 8 ~~~l~V~nLp~------~~~e~~l~~~F~~~G~i~~--v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~G 79 (94)
T d2cpha1 8 TSKILVRNIPF------QANQREIRELFSTFGELKT--VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 79 (94)
T ss_dssp CCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHHhCCceE--EEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECC
Confidence 46899999997 4558999999999999999 9999985 48999999999999999999999998 9999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 80 r-~l~V~~A~ 88 (94)
T d2cpha1 80 R-RLVLEWAD 88 (94)
T ss_dssp C-BCEEEECC
T ss_pred E-EEEEEEcC
Confidence 5 77777644
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2.4e-16 Score=121.58 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=63.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+|+|||+|||. ...+++|+++|++||.|.. +.++.+..+|+++|||||+|.++++|.+|++.|||+.++++
T Consensus 1 d~tl~v~nLp~------~~t~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~- 71 (81)
T d2ghpa1 1 ECTLWMTNFPP------SYTQRNIRDLLQDINVVAL--SIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY- 71 (81)
T ss_dssp SCEEEEECCCT------TCCHHHHHHHHHHTTCCCC--EEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTE-
T ss_pred CcEEEEECCCC------cCCHHHHHHHHHHhCcEEe--eeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCE-
Confidence 47999999997 5558999999999999988 88888888999999999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 72 ~i~V~~a 78 (81)
T d2ghpa1 72 TLVTKVS 78 (81)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 7777653
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.1e-16 Score=125.75 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=71.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|++||||||+|.++++|..|++.|||+.++++
T Consensus 18 ~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~- 88 (102)
T d2cpza1 18 GANLFIYHLPQ------EFGDQDLLQMFMPFGNVVS--AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK- 88 (102)
T ss_dssp TCCEEEESCCS------SCCHHHHHHHHGGGSCCSE--EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhhccccc--cceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCE-
Confidence 56899999997 5558999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.++|...
T Consensus 89 ~i~V~~a 95 (102)
T d2cpza1 89 RLKVQLK 95 (102)
T ss_dssp ECEEECC
T ss_pred EEEEEEe
Confidence 7777653
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.5e-16 Score=124.73 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=69.0
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|++||||||+|.+.++|.+|++ |||..++|+ .
T Consensus 19 ~tifV~nL~~------~~te~~l~~~F~~~G~V~~--v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~~~G~-~ 88 (101)
T d2cq4a1 19 RTVFCMQLAA------RIRPRDLEDFFSAVGKVRD--VRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGV-P 88 (101)
T ss_dssp TEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEEETTE-E
T ss_pred CEEEEECCCC------CCCHHHHHHHHcCCCeEEE--EEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCEECCE-E
Confidence 5899999997 5559999999999999999 9999999999999999999999999999995 999999985 7
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 89 l~V~~ 93 (101)
T d2cq4a1 89 IIVQA 93 (101)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.5e-16 Score=119.49 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=64.3
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||+|||. +..+++|+++|++||.|.+ +.||.|+.||++||||||+|.+.++|.+|++ .++..++++ .+
T Consensus 1 klfVgnLp~------~~te~~l~~~F~~~G~I~~--v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~-~~~~~i~g~-~i 70 (75)
T d1x0fa1 1 KIFVGGLSP------DTPEEKIREYFGGFGEVES--IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS-KC 70 (75)
T ss_dssp EEEEESCCS------SCCHHHHHHHHHHHSCEEE--EECCCCTTTCCTTCCEEEEESSSHHHHHHTT-CSSCCBTTB-CC
T ss_pred CEEEcCCCC------CCCHHHHHHHHHHhCCccc--ccccccccccccccEEEEEECCHHHHHHHHh-hCCCEECCE-Ee
Confidence 589999997 5559999999999999999 9999999999999999999999999999997 466778775 55
Q ss_pred EEE
Q 005140 141 AVN 143 (712)
Q Consensus 141 ~v~ 143 (712)
.|.
T Consensus 71 ~vk 73 (75)
T d1x0fa1 71 EIK 73 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.3e-16 Score=124.86 Aligned_cols=76 Identities=30% Similarity=0.381 Sum_probs=68.4
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. ...+++|+++|++||.|.+ +.|+.|+.||++||||||+|.+.++|.+|++.+|+ .++++ .
T Consensus 11 ~~lfV~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr-~ 80 (103)
T d2cqda1 11 TKIFVGGLPY------HTTDASLRKYFEGFGDIEE--AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR-K 80 (103)
T ss_dssp SEEEEECCCS------SCCHHHHHHHHHTTSCEEE--EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE-E
T ss_pred cEEEEeCCCC------cCcHHHHHHHHhhcccccc--eeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCCE-E
Confidence 5799999997 4448999999999999999 99999999999999999999999999999999887 58874 7
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
+.|...
T Consensus 81 l~V~~a 86 (103)
T d2cqda1 81 ANVNLA 86 (103)
T ss_dssp CEEEES
T ss_pred EEEEEc
Confidence 888653
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.4e-16 Score=120.74 Aligned_cols=76 Identities=30% Similarity=0.397 Sum_probs=67.5
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~ 141 (712)
|||+|||. +..+.+|+++|++||.|.+. +.++.|+.+|+++|||||+|.++++|.+|++.|||..++++ .+.
T Consensus 1 lfV~nLp~------~~te~~l~~~F~~~G~i~~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr-~l~ 72 (83)
T d1x5ta1 1 IFIGNLDP------EIDEKLLYDTFSAFGVILQT-PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR-PIT 72 (83)
T ss_dssp EEEECCCT------TCCHHHHHHHHHTTSCBSSC-CEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE-ECE
T ss_pred CEEcCCCC------cCcHHHHHHHHHHhCceeee-EEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCE-EEE
Confidence 79999997 55589999999999998651 37899999999999999999999999999999999999985 787
Q ss_pred EEee
Q 005140 142 VNMF 145 (712)
Q Consensus 142 v~~~ 145 (712)
|...
T Consensus 73 v~~a 76 (83)
T d1x5ta1 73 VSYA 76 (83)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7763
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=5.6e-16 Score=120.75 Aligned_cols=75 Identities=24% Similarity=0.484 Sum_probs=67.0
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQ---KSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~---~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
|||+|||. +..+++|+++|++||.|.+ +.|+.|+.++ ++||||||+|.++++|.+|++.|||..++++
T Consensus 1 LfV~nLp~------~~t~~~l~~~F~~~G~v~~--v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~- 71 (85)
T d2cpfa1 1 LFIKNLNF------STTEETLKGVFSKVGAIKS--CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH- 71 (85)
T ss_dssp EEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE-
T ss_pred CEEcCCCC------CCCHHHHHHHHHHhCCccc--cceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCE-
Confidence 79999997 4558999999999999999 9999998665 5799999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 72 ~i~V~~a 78 (85)
T d2cpfa1 72 KLEVRIS 78 (85)
T ss_dssp ECEEECS
T ss_pred EEEEEEC
Confidence 7887653
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4e-16 Score=126.80 Aligned_cols=77 Identities=29% Similarity=0.448 Sum_probs=70.6
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.+ +.|+.|+.||+++|||||+|.+.++|.+|++.|||..++++ .
T Consensus 9 rtl~V~nLp~------~~te~~l~~~f~~~G~i~~--v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~ 79 (104)
T d1p1ta_ 9 RSVFVGNIPY------EATEEQLKDIFSEVGPVVS--FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR-A 79 (104)
T ss_dssp SCEEEESCCT------TSCHHHHHHHHHTTSCCSE--EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS-C
T ss_pred CEEEEECCCC------cCCHHHHHHhhhccccccc--cccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCE-E
Confidence 4799999997 5558999999999999999 99999999999999999999999999999999999999986 7
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
+.|...
T Consensus 80 i~V~~a 85 (104)
T d1p1ta_ 80 LRVDNA 85 (104)
T ss_dssp BEEEET
T ss_pred EEEEEC
Confidence 777653
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=7.7e-16 Score=121.41 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=71.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+.+|||+|||. ...+.+|+++|++||.|.. +.++.++.+|+++|||||+|.++++|++|++.|||+.++++
T Consensus 5 ~~kifV~nLp~------~~t~~~l~~~F~~~G~i~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~- 75 (90)
T d1x5sa1 5 EGKLFVGGLSF------DTNEQSLEQVFSKYGQISE--VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR- 75 (90)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHHHHSCCCE--EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC-
T ss_pred CCEEEEECCCC------cCCHHHHHHhhhccccccc--eeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 45899999997 4558999999999999999 99999999999999999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 76 ~l~V~~a 82 (90)
T d1x5sa1 76 QIRVDQA 82 (90)
T ss_dssp CCEEEEE
T ss_pred EEEEEEc
Confidence 7777654
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.2e-16 Score=124.27 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=69.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.. +.|++|+.++.+||||||+|.+.++|.+|++ +||..|++ +.
T Consensus 21 ~~lfVgnLp~------~~te~~L~~~F~~~G~i~~--~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~l~G-~~ 90 (103)
T d1x4ba1 21 RKLFIGGLSF------ETTEESLRNYYEQWGKLTD--CVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDG-RV 90 (103)
T ss_dssp TEEEEECCTT------CCCHHHHHHHHTSSCCCSE--EEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEEETT-EE
T ss_pred CEEEEeCCCC------cCCHHHHHHHHHhhCcccc--eeecccccCCCccCeEEEEECCHHHHHHHHH-hCCCeECC-EE
Confidence 5899999997 5559999999999999999 9999999999999999999999999999986 79999987 48
Q ss_pred EEEEeec
Q 005140 140 FAVNMFD 146 (712)
Q Consensus 140 l~v~~~~ 146 (712)
+.|....
T Consensus 91 i~V~~a~ 97 (103)
T d1x4ba1 91 VEPKRAV 97 (103)
T ss_dssp EEEECCS
T ss_pred EEEEECc
Confidence 8886543
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.60 E-value=2.8e-15 Score=129.08 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=72.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
..++|||+|||. +..+++|+++|++||.|.+ +.|+.|+.||++||||||+|.+.++|.+|++.|||+.|+++
T Consensus 41 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr 112 (139)
T d1u6fa1 41 VLRNLMVNYIPT------TVDEVQLRQLFERYGPIES--VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCST------TCCHHHHHHHHHHHSCEEE--EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhhccccc--cccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCE
Confidence 346899999997 5558999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++|...
T Consensus 113 -~l~V~~a 119 (139)
T d1u6fa1 113 -RLKVALA 119 (139)
T ss_dssp -EEEEEES
T ss_pred -EEEEEEc
Confidence 8888764
|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: E3 ubiquitin protein ligase CNOT4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=5.3e-16 Score=121.43 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=65.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHH---HHHhhccCeeeeceEEEeccCCCCCc---ccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVI---RKIYSQIGVIKEDGLWMPVDPETQKS---LGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l---~~~f~~~g~v~~~~~~~~~d~~~~~~---~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.+.|||+|||. +..+++| +++|++||.|.. +.++.|+.++.+ +|||||+|.++++|.+|++.|||+
T Consensus 8 ~n~vyV~nLp~------~~t~~~l~~~~e~F~~~G~I~~--v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~ 79 (89)
T d2cpia1 8 KNLVFVVGLSQ------RLADPEVLKRPEYFGKFGKIHK--VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 79 (89)
T ss_dssp SSCEEEEEECT------TTCCHHHHHSTTTTTTTSCEEE--EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCEEEEECCCC------ccCHHHHHHHHHHhcccCCceE--EEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCC
Confidence 35799999996 3335666 568999999999 999999877655 499999999999999999999999
Q ss_pred ccCCceEEEEE
Q 005140 133 KLDRAHIFAVN 143 (712)
Q Consensus 133 ~~~~~~~l~v~ 143 (712)
.++++ +++|+
T Consensus 80 ~~~gr-~lkvS 89 (89)
T d2cpia1 80 VVDGR-TLKAS 89 (89)
T ss_dssp EETTE-EEEEE
T ss_pred EECCE-EEEEC
Confidence 99985 88774
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.5e-15 Score=115.22 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=67.9
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
+.|||+|||. +..+++|+++|++||.|.. +.++.|+.+++++|||||+|.++++|.+|++ +||..|+|+ .
T Consensus 3 r~lfV~nLp~------~~te~~l~~~F~~~G~i~~--~~~~~~~~~~~~~g~afV~f~~~e~~~~al~-~~~~~l~Gr-~ 72 (79)
T d1l3ka2 3 KKIFVGGIKE------DTEEHHLRDYFEQYGKIEV--IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGH-N 72 (79)
T ss_dssp SEEEEECCTT------TCCHHHHHHHHTTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTE-E
T ss_pred CEEEECCCCC------cCCHHHHHHHHHHhccccc--cccccCCCCcccccEEEEEEcCHHHHHHHHH-hCCCEECCE-E
Confidence 5899999998 5559999999999999999 9999999999999999999999998888885 899999985 7
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 73 i~V~~ 77 (79)
T d1l3ka2 73 CEVRK 77 (79)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 77764
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6e-16 Score=116.22 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=64.0
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
|||+|||. +..++.|+++|++||.|.. +.++.++.+++++|||||+|.++++|.+|++.|||..++++
T Consensus 1 lyV~nLp~------~~te~~l~~~F~~~G~v~~--~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr 68 (72)
T d1x4ea1 1 LYIRGLQP------GTTDQDLVKLCQPYGKIVS--TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 68 (72)
T ss_dssp EEEESCCT------TCCHHHHHTTSTTTSCEEE--EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CEEeCCCC------cCCHHHHHHHHhhhccccc--cccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCE
Confidence 79999997 4458899999999999999 99999999999999999999999999999999999999885
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=2.3e-15 Score=117.12 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=65.0
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEecc-CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVD-PETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d-~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+++|||+|||. +++ ++.|+++|++||.|.+ +.|+.+ ..+|+++|||||+|.+.++|.+|++ |||..+++
T Consensus 4 ~~~l~V~nLp~~~t~------ed~l~~~F~~~G~i~~--v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~g 74 (86)
T d2ghpa3 4 GREIMIRNLSTELLD------ENLLRESFEGFGSIEK--INIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGN 74 (86)
T ss_dssp TTEEEEEEECTTTCC------HHHHHHHHGGGSCEEE--EECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEETT
T ss_pred CCEEEEECCCCCccc------HHHHHHHHHhhhhccc--eeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEECC
Confidence 57999999995 433 6679999999999999 999885 5789999999999999999999996 99999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 75 r-~l~V~~a 82 (86)
T d2ghpa3 75 R-EISVSLA 82 (86)
T ss_dssp E-EEEEEEC
T ss_pred E-EEEEEEc
Confidence 5 8888764
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.8e-15 Score=115.99 Aligned_cols=77 Identities=29% Similarity=0.352 Sum_probs=67.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.++.|+.++ +|||||+|.+.++|.+|++.+||..+.++
T Consensus 7 ~~~tl~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~d~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~ 76 (90)
T d2cqia1 7 QPRTLYVGNLSR------DVTEVLILQLFSQIGPCKS--CKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGK 76 (90)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHHHHSCEEE--EEEECCCCSS--CCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCcee--eeeecccCcc--ceeeEEEECCHHHHHHHHHHcCCCEECCE
Confidence 346999999997 4458999999999999999 9999998544 89999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++|...
T Consensus 77 -~i~v~~a 83 (90)
T d2cqia1 77 -EVKVNWA 83 (90)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEEc
Confidence 7887653
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.3e-15 Score=115.03 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.|+.++ +|++||||||+|.++++|.+|++ ++|..+.++
T Consensus 6 ~rtvfV~nlp~------~~te~~l~~~F~~~G~v~~--v~l~~~~-~~~~kG~afV~f~~~e~a~~al~-~~~~~~~g~- 74 (85)
T d1zh5a2 6 NRSVYIKGFPT------DATLDDIKEWLEDKGQVLN--IQMRRTL-HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET- 74 (85)
T ss_dssp TTEEEEECCCT------TCCHHHHHHHHTTSCCEEE--EEEEECT-TCCEEEEEEEEESCHHHHHHHHT-CCCCEETTE-
T ss_pred cCEEEEECCCC------CCCHHHHHHHHHHhccccc--ceeeeec-cCCcceEEEEEEcCHHHHHHHHH-HCCCEECCE-
Confidence 46899999997 5558999999999999999 9999987 89999999999999999999996 799999885
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 75 ~l~v~~ 80 (85)
T d1zh5a2 75 DLLILF 80 (85)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 777754
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=2.1e-15 Score=114.42 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=67.1
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
.|||+|||. +..+++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|.+|++ +||..++++ .+
T Consensus 1 rlfV~nLp~------~~te~~l~~~F~~~G~i~~--~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr-~i 70 (75)
T d2msta_ 1 KIFVGGLSV------NTTVEDVKHYFEQFGKVDD--AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-MV 70 (75)
T ss_dssp CEEEECCCS------SCCHHHHHHHHHTTSCCSE--ECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTB-CC
T ss_pred CEEEeCCCC------CCCHHHHHHHHHHhCCcce--eeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECCe-EE
Confidence 489999997 4558999999999999999 9999999999999999999999999999996 999999985 77
Q ss_pred EEEe
Q 005140 141 AVNM 144 (712)
Q Consensus 141 ~v~~ 144 (712)
.|..
T Consensus 71 ~V~~ 74 (75)
T d2msta_ 71 ECKK 74 (75)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=8.5e-15 Score=115.71 Aligned_cols=77 Identities=22% Similarity=0.391 Sum_probs=68.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+++|+++|++||.|.. +.++.|+ +.++|||||+|.++++|.+|++.|||..++++
T Consensus 11 ~~~l~v~nLp~------~~t~~~L~~~F~~~G~v~~--v~~~~~~--~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~- 79 (93)
T d2cq3a1 11 PKRLHVSNIPF------RFRDPDLRQMFGQFGKILD--VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR- 79 (93)
T ss_dssp CCEEEEESCCT------TCCHHHHHHHGGGTSCEEE--EEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHhhcceeee--ccccccc--cCCcceeEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 45899999997 4458999999999999999 9999997 44799999999999999999999999999985
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++|....
T Consensus 80 ~l~V~~A~ 87 (93)
T d2cq3a1 80 KIEVNNAT 87 (93)
T ss_dssp ECEEEECC
T ss_pred EEEEEecC
Confidence 88887643
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=8.3e-15 Score=121.26 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=67.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+++|||+|||. ...++.|+++|++||.|.+ |.++.+ +.+||||||+|.+.++|..|++.|||+.++++
T Consensus 6 ~~r~l~V~nLp~------~~te~~l~~~F~~~G~v~~--i~~~~~---~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr 74 (114)
T d2f9da1 6 VNRILYIRNLPY------KITAEEMYDIFGKYGPIRQ--IRVGNT---PETRGTAYVVYEDIFDAKNACDHLSGFNVCNR 74 (114)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEECS---TTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHhhcCCeEe--eccccc---CCcCCeEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467999999997 5559999999999999999 999865 57899999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 75 -~l~V~~a 81 (114)
T d2f9da1 75 -YLVVLYY 81 (114)
T ss_dssp -ECEEEEC
T ss_pred -EEEEEEc
Confidence 7777654
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.4e-15 Score=117.08 Aligned_cols=76 Identities=29% Similarity=0.356 Sum_probs=67.6
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.+|||+|||. +..+++|+++|++||.|.. +.++.|+ +.++|||||+|.+.++|.+|++.|||..++++ .
T Consensus 9 ~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--~~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~-~ 77 (89)
T d1cvja2 9 GNIFIKNLDK------SIDNKALYDTFSAFGNILS--CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR-K 77 (89)
T ss_dssp TEEEEESCCS------SCCHHHHHHHHHTTSCEEE--EEECCBT--TBCCSCEEEEESCHHHHHHHTTSSSEEEETTE-E
T ss_pred CEEEEeCCCC------CCCHHHHHHHHHhcCCceE--EEEEeec--CCCcceeEEEECCHHHHHHHHHHcCCCEECCE-E
Confidence 4799999997 4448999999999999999 9999997 45889999999999999999999999999885 8
Q ss_pred EEEEeec
Q 005140 140 FAVNMFD 146 (712)
Q Consensus 140 l~v~~~~ 146 (712)
+.|....
T Consensus 78 i~V~~a~ 84 (89)
T d1cvja2 78 VFVGRFK 84 (89)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=1e-13 Score=142.02 Aligned_cols=300 Identities=7% Similarity=-0.113 Sum_probs=165.3
Q ss_pred CcccceEEEcCCCcEE--EE-EecCc---eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 213 YWTESFVQWSPLGTYL--AT-VHRQG---AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~l--at-~~~~~---i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
......++.+++|+.. +. ...++ +.+||.. +.+.+.+........++|||||++|++.+............+.
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~-~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAG-CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETT-TTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCC-CCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCe
Confidence 3444556678888753 32 22333 5577988 7877777765555579999999999876531000011112268
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceeccccccccc---
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVE--- 361 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~--- 361 (712)
|.+||..+++.+..+..+....... + ...+ .++||| ||++|+.+. ++.+.+||+.+++.+.....+..
T Consensus 98 v~v~D~~t~~~~~~i~~p~~~~~~~--g---~~p~-~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 170 (368)
T d1mdah_ 98 VEVFDPVTFLPIADIELPDAPRFSV--G---PRVH-IIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI 170 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCSCCB--S---CCTT-SEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred EEEEECCCCcEeeeecCCccceecc--c---CCcc-ceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE
Confidence 9999999999988876554322100 0 0012 489999 999988775 79999999998877654322211
Q ss_pred ----CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 362 ----NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 362 ----~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
....+.++++|..+++ ...+...
T Consensus 171 ~~~~~~~~v~~~~Dg~~~~~-------------------------------------------------~~~~~~~---- 197 (368)
T d1mdah_ 171 HPGAAATHYLGSCPASLAAS-------------------------------------------------DLAAAPA---- 197 (368)
T ss_dssp EEEETTEEECCCCTTSCEEE-------------------------------------------------ECCSSCC----
T ss_pred ccCCCceEEEEcCCCCEEEE-------------------------------------------------EecCCce----
Confidence 1112223333332222 1111110
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC------
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------ 511 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------ 511 (712)
..+..... ....+...+....+++++..+.... + .+.++++...... .+....
T Consensus 198 -----~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~--~---~v~~~~~~~~~~~----~~~~~~~~~~~~ 256 (368)
T d1mdah_ 198 -----AAGIVGAQ-------CTGAQNCSSQAAQANYPGMLVWAVA--S---SILQGDIPAAGAT----MKAAIDGNESGR 256 (368)
T ss_dssp -----CCEECCCC-------SCTTSCBCSCCEEETTTTEEEECBS--S---CCEEEECCSSCCE----EECCCCSSCTHH
T ss_pred -----eeeeeecc-------cccccccceeecccccCcEEEEecC--C---CEEEEeecCCceE----EEeeccccccee
Confidence 00000000 0001122223334444443333221 1 3344443322110 111110
Q ss_pred ------CCceeEEEEccCCCeEEEEeccC------CCceEEEEECCcceeeeecc-ccceeeEEECCCCCEE--EEEEcc
Q 005140 512 ------GKQANALFWSPSGRFIVLAGLKG------FNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYV--ATAVTS 576 (712)
Q Consensus 512 ------~~~v~~l~~spdg~~l~~~~~~~------~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l--~t~s~~ 576 (712)
......++++|++..+++..... ....|.+||..+++.+.+.. ...+.+++|||||+.+ +++..
T Consensus 257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~- 335 (368)
T d1mdah_ 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG- 335 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT-
T ss_pred eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCC-
Confidence 01134588999999887764321 12469999999998887633 3567889999999853 33334
Q ss_pred ceeccccEEEEEec-Cceeeeecc
Q 005140 577 VHEMENGFNIWSFN-GKLLYRTLK 599 (712)
Q Consensus 577 ~~~~d~~v~iw~~~-g~~~~~~~~ 599 (712)
++.|+|||.. |+.+.....
T Consensus 336 ----~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 336 ----TEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp ----TTEEEEEESSSCEEEEECCC
T ss_pred ----CCeEEEEECCCCCEEEEEEC
Confidence 8999999976 666655543
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.1e-14 Score=117.82 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=70.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeee------ceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKE------DGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~------~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
-.++|||+|||. ...+++|+++|++||.|.. ..+.++.|+.+|+++|||||+|.++++|.+|++.|||
T Consensus 7 ~~~~i~V~nLp~------~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g 80 (101)
T d2cpea1 7 DNSAIYVQGLND------SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 80 (101)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCC------cCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCC
Confidence 356999999997 4558999999999998742 2378999999999999999999999999999999999
Q ss_pred CccCCceEEEEEee
Q 005140 132 YKLDRAHIFAVNMF 145 (712)
Q Consensus 132 ~~~~~~~~l~v~~~ 145 (712)
+.++++ .+.|...
T Consensus 81 ~~~~gr-~i~V~~a 93 (101)
T d2cpea1 81 KDFQGS-KLKVSLA 93 (101)
T ss_dssp CEETTE-ECEEECS
T ss_pred CEECCE-EEEEEEc
Confidence 999985 8888764
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=1.3e-14 Score=116.64 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=68.4
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC------CC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN------GY 132 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~------~~ 132 (712)
+++|||+|||. +..++.|+++|++||.|.+ +.++.++.+++++|||||+|.+.++|.+|++.+| |.
T Consensus 8 ~~tlfV~nLp~------~~te~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 79 (98)
T d1x4ha1 8 GKTVFIRNLSF------DSEEEALGEVLQQFGDLKY--VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 79 (98)
T ss_dssp CCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCEEEEcCCCC------cCCHHHHHHHHhcccccee--eeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCc
Confidence 46899999997 5559999999999999999 9999999999999999999999999999999987 45
Q ss_pred ccCCceEEEEEee
Q 005140 133 KLDRAHIFAVNMF 145 (712)
Q Consensus 133 ~~~~~~~l~v~~~ 145 (712)
.++++ .++|...
T Consensus 80 ~~~gr-~l~v~~a 91 (98)
T d1x4ha1 80 KLDGR-QLKVDLA 91 (98)
T ss_dssp ESSSC-EEEEECC
T ss_pred EECCE-EEEEEEC
Confidence 56664 7777653
|
| >d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.2e-14 Score=116.85 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=64.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.+. +++++|||||+|.+.++|.+|++.|||..+.++
T Consensus 18 ~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~--~~~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr 87 (101)
T d1x5oa1 18 PTNLYISNLPL------SMDEQELENMLKPFGQVIS--TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 87 (101)
T ss_dssp TTEEEEESCCT------TCCHHHHHHTTTTTSCEEE--EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHhhcccccc--eeeeccc-ccccccceeEEeCCHHHHHHHHHHhCCCEECCc
Confidence 46899999997 4558999999999999999 9898886 899999999999999999999999999999876
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=3.7e-13 Score=137.78 Aligned_cols=289 Identities=9% Similarity=-0.007 Sum_probs=160.2
Q ss_pred CCCCCceEEEEE--CCeeEE--EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEeecc
Q 005140 178 DEKARDQFVIRS--GTDTEV--LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGA 242 (712)
Q Consensus 178 ~~~~~~~~~~~~--~~~~~~--~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~ 242 (712)
.++++..++... ..+... +|+. ..++.......+.. ..++|||||++|++.+. ++ |.+||..
T Consensus 28 ~~~~~~~~v~~~~~~~g~~~~~~~d~-~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~ 104 (368)
T d1mdah_ 28 GAISRRSHITLPAYFAGTTENWVSCA-GCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEET-TTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred CCCCcceeEEeeccCCCcceEEEEeC-CCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence 456666655543 233333 4454 34444445555443 35899999999998652 33 8899999
Q ss_pred cCcceeeeecC---------CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 243 NTFNRLMRYAH---------PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 243 ~~~~~~~~~~~---------~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
+.+.+..+.. .....++|||||++|+++..++ +.|.+||+.+++.++.+..+....
T Consensus 105 -t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~---------~~v~~~d~~~~~~~~~~~~~~~~~----- 169 (368)
T d1mdah_ 105 -TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS---------SAAAGLSVPGASDDQLTKSASCFH----- 169 (368)
T ss_dssp -TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS---------SCEEEEEETTTEEEEEEECSSCCC-----
T ss_pred -CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC---------CeEEEEECCCCcEeEEeeccCcce-----
Confidence 7777766531 1145799999999999886441 789999999999988876654322
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc------ccccccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK------KSLKVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~------~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
+... ....++..+ |+.+.++++........ ...+...+....+++++..+.. .+
T Consensus 170 ----------~~~~--~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~ 230 (368)
T d1mdah_ 170 ----------IHPG--AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-------VA 230 (368)
T ss_dssp ----------CEEE--ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-------BS
T ss_pred ----------EccC--CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-------cC
Confidence 1111 122333333 66666666553322110 0111222455677777765554 22
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
+.+.+..+.......+..............|. ....
T Consensus 231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~g~ 266 (368)
T d1mdah_ 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFR--------------------------------------------SAGF 266 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE--------------------------------------------ECSS
T ss_pred CCEEEEeecCCceEEEeecccccceeeeeeec--------------------------------------------CCCc
Confidence 33332222211110000000000000000000 1112
Q ss_pred EEEEEeeCCCEEEEEEcCCC------CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 467 IAFAWEPKGHRFAVIHGDSP------RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~------~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
..++++|++..+++...++. ...|.+||..++. .+..+. +..+..++|||||+.+++++... ++.|
T Consensus 267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~------~~~~~~~~~~~~~~a~spDG~~~ly~s~~~-~~~v 339 (368)
T d1mdah_ 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ------TSGPISNGHDSDAIIAAQDGASDNYANSAG-TEVL 339 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC------EEECCEEEEEECEEEECCSSSCEEEEEETT-TTEE
T ss_pred eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc------EeEEecCCCceeEEEECCCCCEEEEEEeCC-CCeE
Confidence 33667777777666543221 1258889987664 444444 34678899999998533222122 7999
Q ss_pred EEEECCcceeeeecc
Q 005140 540 EFYNVDELETMATAE 554 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~ 554 (712)
++||..+++.+.+..
T Consensus 340 ~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 340 DIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEESSSCEEEEECC
T ss_pred EEEECCCCCEEEEEE
Confidence 999999999887754
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=2.2e-14 Score=107.82 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=64.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. ...++.|+++|++||.|.. +.|+.|+. ..+|||||+|.++++|.+|+. +||..++++ .
T Consensus 1 Ttv~V~nlp~------~~t~~~l~~~F~~~G~I~~--v~~~~~~~--~~~~~afV~F~~~~~a~~Al~-~~~~~i~g~-~ 68 (75)
T d2ghpa2 1 TTVLVKNLPK------SYNQNKVYKYFKHCGPIIH--VDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQN-E 68 (75)
T ss_dssp CEEEEEEECT------TCCHHHHHHHHGGGSCEEE--EEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTE-E
T ss_pred CEEEEECCCC------CCCHHHHHHHHhcCCceEE--EEEEeecc--ccceEEEEEEcchHHhHHHHH-hcCcEECCE-E
Confidence 5799999997 5559999999999999999 99999983 346899999999999999985 899999885 7
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
+.|...
T Consensus 69 i~V~~~ 74 (75)
T d2ghpa2 69 IIVSHL 74 (75)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 777653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.1e-11 Score=117.09 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=137.5
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
|.|.|.+++..+...-....+.+.+|||||++||...... ....+.+.+..++.............
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~------- 86 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANGAVRQVASFPRHNG------- 86 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTCCEEEEECCSSCEE-------
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeec-------cCcceeeeecccCceeEEeeeecccc-------
Confidence 4455776444444433444588999999999999887652 11467777876665444333333222
Q ss_pred cCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcC--CceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETE--SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
...||| +|+.++... .+...++... ...... ............+++++..+.+.. ..++...|
T Consensus 87 -------~~~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~i 153 (269)
T d2hqsa1 87 -------APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTS----DQAGRPQV 153 (269)
T ss_dssp -------EEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEE----CTTSSCEE
T ss_pred -------cceecC-CCCeeeEeeecCCccceeeccccccccee-eeeccccccccccccccccceecc----cccCCceE
Confidence 589999 999888766 3333333222 111111 101111233445556555554421 12222333
Q ss_pred EEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 392 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+.++... ... ..+..+........|
T Consensus 154 ~~~~~~~-----------------------------------------------------~~~--~~~~~~~~~~~~~~~ 178 (269)
T d2hqsa1 154 YKVNING-----------------------------------------------------GAP--QRITWEGSQNQDADV 178 (269)
T ss_dssp EEEETTS-----------------------------------------------------SCC--EECCCSSSEEEEEEE
T ss_pred eeeeccc-----------------------------------------------------ccc--eeeeccccccccccc
Confidence 3332211 111 112223456667889
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+|+++.++..+.++....+.+++...+. ..............|||||++|+..+.......|++++++++....
T Consensus 179 spdg~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~ 252 (269)
T d2hqsa1 179 SSDGKFMVMVSSNGGQQHIAKQDLATGG------VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 252 (269)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTCC------EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred ccccceeEEEeecCCceeeeEeeccccc------ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 9999999988876643344444443222 2122223456778999999999887654335689999999766544
Q ss_pred e-ccccceeeEEECC
Q 005140 552 T-AEHFMATDVEWDP 565 (712)
Q Consensus 552 ~-~~~~~v~~~~~sp 565 (712)
. ...+.+..++|||
T Consensus 253 lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 253 LPATDGQVKFPAWSP 267 (269)
T ss_dssp CCCSSSEEEEEEECC
T ss_pred EeCCCCcEEeEEeCC
Confidence 3 3446778899999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.49 E-value=1.1e-13 Score=140.84 Aligned_cols=295 Identities=11% Similarity=0.048 Sum_probs=170.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
||+......++|||++|++..... ..|.++|+.+++....+..+ .... .++|+|
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~---------~rVavIDl~t~k~~~ii~iP~g~gph--------------gi~~sp- 125 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKAN---------TRVARIRLDIMKTDKITHIPNVQAIH--------------GLRLQK- 125 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTT---------TEEEEEETTTTEEEEEEECTTCCCEE--------------EEEECC-
T ss_pred cCCCcceecccCCCCEEEEEcCCC---------CEEEEEECCCCcEeeEEecCCCCCcc--------------ceEEec-
Confidence 455677788899999997765441 68999999999887765433 2222 589999
Q ss_pred CCC--EEEEecCCeE------------------EEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCe
Q 005140 330 KDK--YFAKLGKNMI------------------SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 389 (712)
Q Consensus 330 dg~--~la~~~d~~i------------------~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 389 (712)
+|+ |++..+...+ ..+|..++........ ......+.++|+|+++++.. .+...
T Consensus 126 dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~-----~nse~ 199 (441)
T d1qnia2 126 VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTC-----YNSER 199 (441)
T ss_dssp SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEE-----SCTTC
T ss_pred cCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEe-----cCCCc
Confidence 998 5554444333 4467776665543322 23578899999999988632 22111
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 469 (712)
. ..++..+.........+.. .....++|+|+++.++... . ..++.. ....... .++. ....+.+
T Consensus 200 ~-~~id~~t~~~~d~i~v~n~-p~~~~~~~dGk~~~v~~~~-v---------~vvd~~-~~~~v~~--~IPv-gksPhGv 263 (441)
T d1qnia2 200 A-VDLAGTMRNDRDWVVVFNV-ERIAAAVKAGNFKTIGDSK-V---------PVVDGR-GESEFTR--YIPV-PKNPHGL 263 (441)
T ss_dssp C-SSHHHHTCSSBCEEEEEEH-HHHHHHHHTTCCBCCTTCC-C---------CEEECS-SSCSSEE--EECC-BSSCCCE
T ss_pred e-EEEeccCcceEEEEEeCCc-cceEEEecCCCEEEeCCCC-c---------EEEEcc-cCCceEE--EEeC-CCCccCc
Confidence 0 0112112222211111111 1122357788876542221 1 122211 1111122 2222 2345779
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccc------cCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQH------AGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~------~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
.++|||+++++++... ++|.+||+.+... ..+........ +-.....+|+++|..+.+... |.+|..|
T Consensus 264 ~vSPDGkyl~~~~~~~--~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~---ds~v~kw 338 (441)
T d1qnia2 264 NTSPDGKYFIANGKLS--PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI---DSQVCKW 338 (441)
T ss_dssp EECTTSCEEEEECTTS--SBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT---TTEEEEE
T ss_pred eECCCCCEEEEeCCcC--CcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc---cceEEEe
Confidence 9999999988876533 2999999865221 00011111111 113455689999987777766 9999999
Q ss_pred ECCcc----------eeee-------eccccceeeEEECCCCCEEEEEEcc---cee-----ccccEEEEEecCceeeee
Q 005140 543 NVDEL----------ETMA-------TAEHFMATDVEWDPTGRYVATAVTS---VHE-----MENGFNIWSFNGKLLYRT 597 (712)
Q Consensus 543 d~~~~----------~~~~-------~~~~~~v~~~~~spdg~~l~t~s~~---~~~-----~d~~v~iw~~~g~~~~~~ 597 (712)
++... .++. .+|...+.+.+++|||+||++++.- +.- -...-++.|+.|..+.-.
T Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~ 418 (441)
T d1qnia2 339 NIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLV 418 (441)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEE
T ss_pred ccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEE
Confidence 97521 1211 2455666678899999999999542 100 023467899998765544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-11 Score=129.02 Aligned_cols=336 Identities=12% Similarity=0.087 Sum_probs=181.2
Q ss_pred EEEcCCCcEEEEEecCceEEeecccCcceeeeec-----CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 219 VQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-----HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-----~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
+.|++++.++.......+.+|+.. +......+. .-.+....|||||++|+....... .-+....+.+.++|+.
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~-~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP-IYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC-CSSSCCCSEEEEEESS
T ss_pred CEEeCCCcEEEEeCCCcEEEEECC-CCCEEEEEcCccccccccceeEECCCCCeEEEEEcccc-eeEeeccccEEEEEcc
Confidence 469999987765444448899998 444322222 124788899999999887654211 1111223689999998
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccc-------------
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKV------------- 360 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~------------- 360 (712)
++............ ..+. ...||| ||+.||...++.|.+.+..++..+....-..
T Consensus 100 ~~~~~~l~~~~~~~---------~~l~--~~~wSP-DG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vy 167 (465)
T d1xfda1 100 HGDPQSLDPPEVSN---------AKLQ--YAGWGP-KGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (465)
T ss_dssp SCCCEECCCTTCCS---------CCCS--BCCBCS-STTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred CCceeeccCccCCc---------cccc--eeeecc-CCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhh
Confidence 88753322211111 0112 358999 9999999999999998887654332111000
Q ss_pred -----cCeeeEEECCCCCeEEEEeecC---------------------------CCCCCCeEEEEEecCCccceee-eee
Q 005140 361 -----ENVMDFSWSPTDPIISLFVPEL---------------------------GGGNQPARVSLVQIPSKEELRQ-KNL 407 (712)
Q Consensus 361 -----~~v~~~~~sp~~~~la~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~-~~~ 407 (712)
..-..+.|||||++||++.-.. |..+..++++++++........ ...
T Consensus 168 eee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~ 247 (465)
T d1xfda1 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (465)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred hhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEecc
Confidence 0124677999999999863211 0011123456666544321110 000
Q ss_pred -----eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc----eEEEEEeeCCCEE
Q 005140 408 -----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK----IIAFAWEPKGHRF 478 (712)
Q Consensus 408 -----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~----v~~~~~sp~g~~l 478 (712)
...-...+.|+++++.++....+... ...++.++........+.-....+. -....|+|+|+.+
T Consensus 248 ~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~-------~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQN-------VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSC-------EEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred CcCccccceeeeeEEcCCCeEEEEEEccccc-------cceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 01112346899999877666654431 1234444333322222211111222 2346899999876
Q ss_pred EEE--EcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeE-EEEccCCCeEEEEeccC--CCceEEEEECCcce---
Q 005140 479 AVI--HGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA-LFWSPSGRFIVLAGLKG--FNGQLEFYNVDELE--- 548 (712)
Q Consensus 479 ~~~--~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~-l~~spdg~~l~~~~~~~--~dg~v~iwd~~~~~--- 548 (712)
+.. +..+....+..+.+........-..+..+..+ .|.. ++|+++++.|++.+... ....|+-.++.+..
T Consensus 321 ~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~ 400 (465)
T d1xfda1 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (465)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred EEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce
Confidence 543 33333335666655422111111122233322 3444 57999998887655432 12334444555332
Q ss_pred eeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 549 TMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 549 ~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
++.. .+.....++.|||+|+|++....
T Consensus 401 ~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 401 CLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp CSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 2221 23445678999999999886655
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=6.5e-15 Score=119.26 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+.+|+++|++||.|.. +.++.|..+|+++|||||+|.++++|.+|++.|||..+.++
T Consensus 18 s~tl~V~nLp~------~~t~~~l~~~f~~~G~v~~--~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~- 88 (102)
T d2cpxa1 18 NKVLYLKNLSP------RVTERDLVSLFARFQEKKG--PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK- 88 (102)
T ss_dssp CSEEEEECCCT------TCCHHHHHHHTHHHHHSSS--SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHhhccceee--EEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCE-
Confidence 57999999997 4458999999999999998 88898888999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 89 ~l~V~~ak 96 (102)
T d2cpxa1 89 ILVIEFGK 96 (102)
T ss_dssp BCEEEECC
T ss_pred EEEEEeCC
Confidence 77776643
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=4.5e-14 Score=109.44 Aligned_cols=73 Identities=27% Similarity=0.403 Sum_probs=64.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.+ +.++.+ ||||||+|.+.++|.+|++.|||..++++
T Consensus 8 ~~~l~V~nLp~------~~~~~~l~~~F~~~G~i~~--i~~~~~------k~~afV~f~~~~~A~~A~~~l~g~~i~g~- 72 (86)
T d2cpja1 8 RSRLFVGNLPP------DITEEEMRKLFEKYGKAGE--VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK- 72 (86)
T ss_dssp TTEEEEESCCT------TCCHHHHHHHTSTTCCCSE--EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHHhCCceE--eeeecc------cceEEEEECCHHHHHHHHHHhCCCEECCE-
Confidence 46899999997 4558999999999999999 999865 58999999999999999999999999986
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++|....
T Consensus 73 ~l~V~~A~ 80 (86)
T d2cpja1 73 QLRVRFAC 80 (86)
T ss_dssp CCEEEESS
T ss_pred EEEEEECC
Confidence 88887643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.6e-11 Score=116.59 Aligned_cols=247 Identities=14% Similarity=0.232 Sum_probs=153.3
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
.|.|.|....... ...-....+...+|||||+.||+... ......++.++....... .............|+|+
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spd 93 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTF----ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD 93 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEEC----TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT
T ss_pred EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEe----eccCcceeeeecccCcee-EEeeeecccccceecCC
Confidence 5777776643332 12223345778999999999998632 344455666666554422 22223344455689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.++........ ..++....... .......+........+++++..++..+.......|.++++..+..
T Consensus 94 g~~i~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~ 163 (269)
T d2hqsa1 94 GSKLAFALSKTGS--------LNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 163 (269)
T ss_dssp SSEEEEEECTTSS--------CEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred CCeeeEeeecCCc--------cceeecccccc--cceeeeeccccccccccccccccceecccccCCceEeeeecccccc
Confidence 9999887764321 12332222211 1122223345556678888888888877654444666666654332
Q ss_pred cCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceec
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
..............|+|+|+.++..+.......+.+.+...+...............|||||++|+..+.. ..
T Consensus 164 -----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~--~~ 236 (269)
T d2hqsa1 164 -----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ--GM 236 (269)
T ss_dssp -----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE--TT
T ss_pred -----eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC--CC
Confidence 11122233567789999999999887643334566667666655555555667789999999999987762 11
Q ss_pred cccEEEEEecCceeeee--cccceeeeEEecC
Q 005140 581 ENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 581 d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
...+++++++|...... ..+.+..++|+|.
T Consensus 237 ~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 237 GSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred CcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence 35678889998766554 3356778999995
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.6e-14 Score=110.92 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=64.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.+ +.++.| ||||||+|.+.++|.+|+..|||..++++
T Consensus 17 ~~~~l~v~nL~~------~~te~~L~~~F~~fG~i~~--v~i~~~------kg~afV~f~~~~~A~~Ai~~l~~~~i~g~ 82 (96)
T d1x4ga1 17 KNCTVYCGGIAS------GLTDQLMRQTFSPFGQIME--IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGH 82 (96)
T ss_dssp SCCEEEEECCSS------CCCHHHHHHHHHHHSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHHhCCceE--EEEEec------ceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 357999999996 4448899999999999999 999976 69999999999999999999999999885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.++|..
T Consensus 83 -~l~v~~ 88 (96)
T d1x4ga1 83 -VVKCYW 88 (96)
T ss_dssp -ECEEEC
T ss_pred -EEEEEE
Confidence 788765
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.46 E-value=1.2e-14 Score=114.06 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=66.6
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+.+|||+|||. +..++.|+++|++||.|.. +.+..+ .+|++||||||+|.+.++|.+|++ |||..++++
T Consensus 13 ~~~ifV~nL~~------~~te~~l~~~F~~~G~i~~--~~v~~~-~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~- 81 (91)
T d1fjeb1 13 PFNLFIGNLNP------NKSVAELKVAISELFAKND--LAVVDV-RTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN- 81 (91)
T ss_dssp SEEEEEECCCT------TSCHHHHHHHHHHHHHHHT--CCCCEE-EEETTTTEEEEEESSHHHHHHHHH-GGGEEETTE-
T ss_pred CcEEEEeCccC------cchHHHHHHHHhcCCcEEE--eeeeec-CCCCccEEeEEeeCCHHHHHHHHh-cCCcEECCE-
Confidence 45899999998 5559999999999999988 878655 499999999999999999999996 999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 82 ~i~V~~a 88 (91)
T d1fjeb1 82 EIKLEKP 88 (91)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 8877653
|
| >d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.46 E-value=1.1e-13 Score=106.61 Aligned_cols=73 Identities=25% Similarity=0.463 Sum_probs=63.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...++.|+++|++||.|.. +.+..+ .+|||||+|.+.++|..|++.|||+.+.+++
T Consensus 8 ~~tl~V~nLp~------~~t~~~l~~~f~~~G~i~~--v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 74 (83)
T d2b0ga1 8 NQILFLTNLPE------ETNEMMLSMLFNQFPGFKE--VRLVPN-----RHDIAFVEFTTELQSNAAKEALQGFKITPTH 74 (83)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHTTSTTEEE--EEECTT-----TCSCEEEEESSHHHHHHHHHHHTTCBSSTTC
T ss_pred CCEEEEECCCC------CCCHHHHHhhhccCccEEE--eeeecc-----cceeEEEecCCHHHHHHHHHHhCCcEeCCCc
Confidence 57999999997 4458899999999999999 988764 3689999999999999999999999997656
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+++..
T Consensus 75 ~i~v~~ 80 (83)
T d2b0ga1 75 AMKITF 80 (83)
T ss_dssp BCEEEE
T ss_pred EEEEEE
Confidence 777764
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=3e-14 Score=111.03 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=64.3
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|+|+|||. ...+++|+++|+.||.+.. .+.+..+ .+|+++|||||+|.+.++|.+|++.|||+.+.++ .
T Consensus 10 ~~l~v~nLp~------~~~~~di~~~F~~~~~~~~-~~~~~~~-~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr-~ 80 (86)
T d2cqpa1 10 TIIKVQNMPF------TVSIDEILDFFYGYQVIPG-SVCLKYN-EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR-K 80 (86)
T ss_dssp EEEEEESCCT------TCCHHHHHHHTTTSCCCTT-TCEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE-E
T ss_pred CEEEEECCCC------CCCHHHHHHHHhhccccee-EEEEEeC-CCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCE-E
Confidence 4799999998 5559999999999999865 1345555 4899999999999999999999999999999885 6
Q ss_pred EEEE
Q 005140 140 FAVN 143 (712)
Q Consensus 140 l~v~ 143 (712)
+.|.
T Consensus 81 i~v~ 84 (86)
T d2cqpa1 81 VKLV 84 (86)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7665
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=9.5e-14 Score=110.15 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=65.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.+ +.++|||||+|.+.++|.+|++.|||+.++++
T Consensus 13 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--~~~~~~---~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~ 81 (95)
T d1x4aa1 13 NDCRIYVGNLPP------DIRTKDIEDVFYKYGAIRD--IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 81 (95)
T ss_dssp CSSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHhcCCceEE--EEeccc---ccccceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 356899999997 4558999999999999988 887654 46789999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++|...
T Consensus 82 -~l~V~~a 88 (95)
T d1x4aa1 82 -RLRVEFP 88 (95)
T ss_dssp -ECEEECC
T ss_pred -EEEEEec
Confidence 7887653
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6e-14 Score=111.69 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=65.6
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCe-eeeceEEEeccC-CCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccC
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV-IKEDGLWMPVDP-ETQKSLGYCFIEYNTPQEAELAKEKTNGY--KLD 135 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~-v~~~~~~~~~d~-~~~~~~g~~fv~~~~~~~a~~a~~~~~~~--~~~ 135 (712)
|.|||+|||. +..++.|+++|++||. |.. +.|+.|. .+|+++|||||+|.+.++|..|++.|++. .++
T Consensus 2 ~rLyV~nLp~------~~te~~l~~~f~~~g~~i~~--v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~ 73 (96)
T d2disa1 2 CRLFIGGIPK------MKKREEILEEIAKVTEGVLD--VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 73 (96)
T ss_dssp EEEEEECCCT------TSCHHHHHHHHHHHSTTEEE--EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred CEEEEcCCCC------cCCHHHHHHHHHHhCCcceE--EEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEEC
Confidence 6899999997 5558899999999995 888 9999985 47899999999999999999999999754 445
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
+ +.+.|...
T Consensus 74 g-~~i~V~~A 82 (96)
T d2disa1 74 G-HQIAVDWA 82 (96)
T ss_dssp T-BCCEEEES
T ss_pred C-EEEEEEEc
Confidence 5 47777764
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-13 Score=113.01 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=64.0
Q ss_pred CCEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+||| . ...+++|+++|++||.|.. +.|..|+ ||||||+|.+.++|.+|++.|||..|.++
T Consensus 2 ~~~l~V~nL~p~------~~te~~L~~~F~~fG~I~~--v~i~~~~-----kg~afV~f~~~~~A~~ai~~lng~~l~g~ 68 (109)
T d2adca1 2 NSVLLVSNLNPE------RVTPQSLFILFGVYGDVQR--VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 68 (109)
T ss_dssp CSEEEEESCCTT------TCCHHHHHHHHHHHTCEEE--EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred CCEEEEeCCCcc------cCCHHHHHHHHhhccccce--EEEEecc-----cceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 5799999995 5 2238899999999999999 9998874 79999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 69 -~l~v~~s 75 (109)
T d2adca1 69 -PIRITLS 75 (109)
T ss_dssp -BCEEECC
T ss_pred -EEEEEEC
Confidence 7887763
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.3e-14 Score=110.21 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=65.5
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. +++ +-+++.|..+|++||+|.+ |.++. +++++|||||+|.+.++|.+|++.+||..++++
T Consensus 3 ~~tl~V~nLp~~~t~---~dl~~~l~~~f~~~G~i~~--i~~~~---~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~ 74 (91)
T d1nu4a_ 3 NHTIYINNLNEKIKK---DELKKSLHAIFSRFGQILD--ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 74 (91)
T ss_dssp CSEEEEESCCTTSCH---HHHHHHHHHHHGGGSCEEE--EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHHhcccccccc--eEEee---eccCCCceEEEECCHHHHHHHHHHhCCCEECCE
Confidence 57999999995 443 4456666788999999999 88765 578999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.+...
T Consensus 75 -~l~v~~a 81 (91)
T d1nu4a_ 75 -PMRIQYA 81 (91)
T ss_dssp -ECEEEEC
T ss_pred -EEEEEEe
Confidence 7777653
|
| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.3e-13 Score=109.03 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=67.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+.+|+|.|||. +..+++|+++|+.+|.|.. ..++++..+++++|||||+|.++++|++|++ +|+..|+++
T Consensus 14 ~~~~v~v~nLP~------~~te~dI~~~F~~~g~v~~--~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i~gR 84 (104)
T d1wg5a_ 14 NDGFVRLRGLPF------GCSKEEIVQFFSGLEIVPN--GMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHR 84 (104)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHTTTCCEEEE--EEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCCSSSS
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCceE--EEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCEEcce
Confidence 345899999998 5559999999999999887 7777777799999999999999999999886 899999886
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 85 -~i~V~~~~ 92 (104)
T d1wg5a_ 85 -YIEIFKSS 92 (104)
T ss_dssp -CCEEEEEC
T ss_pred -EEEEEECC
Confidence 66666543
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.3e-13 Score=109.60 Aligned_cols=71 Identities=21% Similarity=0.411 Sum_probs=61.4
Q ss_pred CCCEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..++|||+||| ...+ +.+|+++|++||.|.+ +.| +||||||+|.+.++|.+|++.|||+.+.+
T Consensus 14 ~~~~lfV~nL~~~~~~------~~~L~~~F~~~G~i~~--~~i--------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (98)
T d1wf2a_ 14 MNSRVFIGNLNTLVVK------KSDVEAIFSKYGKIVG--CSV--------HKGFAFVQYVNERNARAAVAGEDGRMIAG 77 (98)
T ss_dssp CCCCEEEEEECTTTCC------HHHHHHSSTTSSCEEE--EEE--------ETEEEEEEESSHHHHHHHHHTTTTCEETT
T ss_pred CCcEEEEeCCCcccCC------HHHHHHHHhhcCCEEE--EEE--------eCCeEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34679999996 5333 7789999999999999 887 47999999999999999999999999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 78 ~-~l~V~~a 85 (98)
T d1wf2a_ 78 Q-VLDINLA 85 (98)
T ss_dssp E-ECEEEET
T ss_pred E-EEEEEEC
Confidence 5 8888763
|
| >d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=1.4e-13 Score=113.39 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=63.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+.+|+++|++||.|.. |.|+ ++||||||+|.+.++|.+|++.|||..|.++
T Consensus 10 ~~~l~V~nLp~------~~t~~~L~~~F~~fG~I~~--v~l~------~~kg~afV~f~~~~~A~~A~~~lng~~~~gr- 74 (111)
T d1whxa_ 10 KTVILAKNLPA------GTLAAEIQETFSRFGSLGR--VLLP------EGGITAIVEFLEPLEARKAFRHLAYSKFHHV- 74 (111)
T ss_dssp EEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECC------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSS-
T ss_pred CCEEEEECCCC------CCCHHHHHhhhhccCCccE--EEee------ccCceEEEEEcCHHHHHHHHHHHcCCccCCC-
Confidence 46899999997 4448899999999999999 8885 3579999999999999999999999999986
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
+|.|...
T Consensus 75 ~l~v~~a 81 (111)
T d1whxa_ 75 PLYLEWA 81 (111)
T ss_dssp BCEEEEE
T ss_pred eEEEEEC
Confidence 7777643
|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.1e-13 Score=105.55 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.+.. ++.+|||||+|.+.++|.+|+..|||+.+...+
T Consensus 10 s~tL~V~NLp~------~~te~~l~~~F~~~G~v~~--~~~~~----~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~ 77 (88)
T d2adca2 10 SATLHLSNIPP------SVSEEDLKVLFSSNGGVVK--GFKFF----QKDRKMALIQMGSVEEAVQALIDLHNHDLGENH 77 (88)
T ss_dssp CSEEEEECCCT------TCCHHHHHHHHHTTSCCEE--EEEEC----SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CCEEEEECCCC------CCCHHHHHHHhhccCCEEE--EEEee----ecccceeEEEECCHHHHHHHHHhccCCEecCCC
Confidence 57999999997 5558899999999999988 66654 456899999999999999999999999985335
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.++|..
T Consensus 78 ~l~v~~ 83 (88)
T d2adca2 78 HLRVSF 83 (88)
T ss_dssp BCEEEE
T ss_pred EEEEEe
Confidence 788765
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.4e-13 Score=107.16 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||. .. +.+ ++.||||||+|.++++|.+|++.|||+.++++
T Consensus 5 s~~i~V~nLp~------~~t~~~l~~lF~~~G~-~~--~~~------~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~- 68 (88)
T d1wg1a_ 5 SSGILVKNLPQ------DSNCQEVHDLLKDYDL-KY--CYV------DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK- 68 (88)
T ss_dssp CCCEEEESCCS------SCCHHHHHHHTCSSCC-CC--EEE------EGGGTEEEECCSCHHHHHHHHHHHTTEEETTE-
T ss_pred CCEEEEeCCCC------ccChHHHHHHHHhcCc-ee--eee------eccCCceEEEECCHHHHHHHHHHhCCCEECCE-
Confidence 56899999997 5569999999999992 22 333 46789999999999999999999999999985
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 69 ~l~V~~a~ 76 (88)
T d1wg1a_ 69 DLIVQLQP 76 (88)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 88887643
|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Negative elongation factor E, NELF-E species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.4e-13 Score=102.65 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=61.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+||| ++ +++|+++|++||.|.+ +.+.. .+|||||+|.+.++|.+|++.|||..++++
T Consensus 4 ~~~ti~V~~~~-~t-------e~~L~~~F~~~G~I~~--v~~~~------~~~~afV~f~~~~~A~~Ai~~lng~~~~g~ 67 (79)
T d2bz2a1 4 KGNTLYVYGED-MT-------PTLLRGAFSPFGNIID--LSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESV 67 (79)
T ss_dssp CCCEEEEECSS-CC-------HHHHHHHHSTTCCCSC--EEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEECCC-CC-------HHHHHHHHhccCccce--eeecc------CCCEEEEEEcccHHHHHHHHHhCCCEECCE
Confidence 46799999998 34 7789999999999999 88875 458999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++|...
T Consensus 68 -~l~V~~a 74 (79)
T d2bz2a1 68 -QLKVNIA 74 (79)
T ss_dssp -BCEEEEC
T ss_pred -EEEEEEe
Confidence 7777653
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.40 E-value=2.4e-13 Score=108.07 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=64.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +. .+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 15 ~~~~l~V~nL~~------~~te~~l~~~F~~~g~v~~--~~-----~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr 81 (96)
T d1fjca_ 15 AARTLLAKNLSF------NITEDELKEVFEDALEIRL--VS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCS------SCCHHHHHHHHCSEEEECC--EE-----ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhccccee--ee-----ecCccccEEEEEeCCHHHHHHHHHHcCCCEECCE
Confidence 357999999997 4448999999999999766 43 2689999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 82 -~i~V~~a~ 89 (96)
T d1fjca_ 82 -SVSLYYTG 89 (96)
T ss_dssp -EEEEEECS
T ss_pred -EEEEEEeC
Confidence 88887543
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-13 Score=111.55 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=65.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+|||+|||. +..+.+|+++|+.||.|.. +.++.+..+|+++|||||+|.+.++|++|++ +||..|+++
T Consensus 8 ~~~v~v~nLp~------~~t~~~l~~~F~~~g~i~~--~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~gr- 77 (103)
T d2cpya1 8 KVCAHITNIPF------SITKMDVLQFLEGIPVDEN--AVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHRKKLNGR- 77 (103)
T ss_dssp CCEEEEESCCT------TSCHHHHHHHTTTSCCCST--TEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEETTE-
T ss_pred ceEEEEeCCCC------CCCHHHHhhhhcccceEEE--EEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cCCCeECCc-
Confidence 35799999998 5559999999999998866 4444444599999999999999999999996 999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 78 ~i~V~~~~~ 86 (103)
T d2cpya1 78 EAFVHVVTL 86 (103)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 777766543
|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.5e-13 Score=106.91 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=58.3
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. ...+++|+++|++||.|.. +.++.| |||||+|.+.++|.+|++.|||..|.++ .
T Consensus 1 nrvfV~nlp~------~~~~~~l~~~F~~~G~v~~--~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~ 64 (87)
T d3begb1 1 NRVVVSGLPP------SGSWQDLKDHMREAGDVCY--ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH-E 64 (87)
T ss_dssp CCEEEEECCS------SCCTTHHHHHHGGGSCEEE--EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT-T
T ss_pred CeEEEECCCC------cCCHHHHHHHHhhhccccc--cccccc-------ceeeEEeCCHHHHHHHHHHhCCCEECCc-E
Confidence 3699999997 3447889999999999999 888754 8999999999999999999999999886 4
Q ss_pred EEE
Q 005140 140 FAV 142 (712)
Q Consensus 140 l~v 142 (712)
+.|
T Consensus 65 i~v 67 (87)
T d3begb1 65 GET 67 (87)
T ss_dssp SCC
T ss_pred eEE
Confidence 444
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.3e-13 Score=108.58 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=63.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP-ETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~-~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++|||+|||. +..+++|+++|++|| +.+ +.++.++ .+|+++|||||+|.+.++|++|+ .+||+.++++
T Consensus 15 ~~~v~V~nLp~------~~te~~l~~~f~~~g-~~~--~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~~gr 84 (104)
T d1wi8a_ 15 PYTAFLGNLPY------DVTEESIKEFFRGLN-ISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CEEEEEESCCS------SCCHHHHHHHTTTSC-EEE--EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCEEEEeCCCC------cCCHHHHHHHHHHhc-ccc--ceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEECCE
Confidence 36999999997 555899999999999 666 7777765 57899999999999999998665 5999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++|...
T Consensus 85 -~l~V~~a 91 (104)
T d1wi8a_ 85 -RIRVDVA 91 (104)
T ss_dssp -ECEEEEC
T ss_pred -EEEEEEC
Confidence 7777653
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.8e-13 Score=108.92 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=66.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+.+|||.|||. +..+++|+++|+.+|. .. +.+++|. +|+.+|||||+|.+.++|++|++ +|+..|+++
T Consensus 14 ~~~~v~v~nLp~------~~te~dl~~~F~~~~~-~~--v~~~~~~-~g~~~G~afVeF~~~~~a~~Al~-~~~~~i~gR 82 (102)
T d1weza_ 14 TGHCVHMRGLPY------RATENDIYNFFSPLNP-MR--VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SSCEEEEESCCT------TCCHHHHHHSSCSCCC-SE--EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHhccCc-ce--eeeEEec-CCcceEEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 456999999998 5669999999999984 56 8888887 79999999999999999999986 899999986
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 83 -~I~V~~s~ 90 (102)
T d1weza_ 83 -YVELFLNS 90 (102)
T ss_dssp -CCEEEEEC
T ss_pred -EEEEEEcC
Confidence 67776543
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.7e-13 Score=108.92 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=62.9
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-ce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-AH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~~ 138 (712)
..|||+|||. +..+++|+++|++||.|.+ +.++.++ .+|||||+|.++++|++|++.|||..+.. ..
T Consensus 8 ~~v~V~NL~~------~vte~~L~~~F~~~G~i~~--~~i~~~~----~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~ 75 (108)
T d2adba1 8 LRIIVENLFY------PVTLDVLHQIFSKFGTVLK--IITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 75 (108)
T ss_dssp EEEESCSCCS------TTHHHHHHHHHTTTSCEEE--EEEEEET----TEEEEEEEESCHHHHHHHHHHHHSCCSSTTCC
T ss_pred EEEEEeCcCC------CCCHHHHHHHHccCCcEEE--EEEEeeC----CCCeEEEEECCHHHHHHHHHHHCCCEeccCCc
Confidence 4799999998 6679999999999999999 9998774 68999999999999999999999998842 33
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.+..
T Consensus 76 ~l~v~~ 81 (108)
T d2adba1 76 TLRIDF 81 (108)
T ss_dssp CCEEEE
T ss_pred EEEEEe
Confidence 555544
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.4e-13 Score=104.77 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=61.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.+|||+|||. ...+++|+++|++||.|.. +.+ ++++|||||+|.++++|.+|+..|||+.++++ .
T Consensus 9 k~l~V~nLp~------~~te~~l~~~F~~~g~i~~--~~~------~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~-~ 73 (86)
T d2cpda1 9 KILYVRNLML------STSEEMIEKEFNNIKPGAV--ERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGS-P 73 (86)
T ss_dssp CEEEEESCCT------TCCHHHHHHHHHTTSTTCE--EEE------EECSSEEEEEESSHHHHHHHHHHHSSEEETTE-E
T ss_pred CEEEEcCCCC------CCCHHHHHHhhcccceeee--EEE------ccccEEEEEEeCCHHHHHHHHHHcCCCEECCE-E
Confidence 5899999997 4558999999999998876 554 45789999999999999999999999999985 7
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 74 i~V~~ 78 (86)
T d2cpda1 74 IEVTL 78 (86)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88765
|
| >d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Ribonucleoprotein PTB-binding 1, Raver-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=6.4e-13 Score=99.63 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=58.1
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~ 141 (712)
|||+|||. +..+++|+++|++|| +.. +.+ ++++|||||+|.+.++|.+|++.|||+.+.++ .+.
T Consensus 1 i~V~nLp~------~~t~~~l~~~F~~~g-~~~--~~~------~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~-~l~ 64 (75)
T d1wi6a1 1 ILIRGLPG------DVTNQEVHDLLSDYE-LKY--CFV------DKYKGTAFVTLLNGEQAEAAINTFHQSRLRER-ELS 64 (75)
T ss_dssp EEEECCCT------TCCHHHHHHHTTTSC-EEE--EEE------ETTTTEEEEEESSHHHHHHHHHHHTTEESSSC-EEE
T ss_pred CEEeCCCC------cCCHHHHHHHHhccc-ccc--eee------cccceeEEEEECCHHHHHHHHHHhCCccCCCC-EEE
Confidence 79999997 556999999999999 333 333 46889999999999999999999999999986 788
Q ss_pred EEee
Q 005140 142 VNMF 145 (712)
Q Consensus 142 v~~~ 145 (712)
|...
T Consensus 65 V~~a 68 (75)
T d1wi6a1 65 VQLQ 68 (75)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.37 E-value=1.3e-13 Score=140.37 Aligned_cols=303 Identities=9% Similarity=0.024 Sum_probs=175.8
Q ss_pred cEEEEEEccCCceeeeccCCCccc--ccCCC-----------CCcCC-CCcCeEE---ecCCCCCEEEEec--CCeEEEE
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEF--AVGGT-----------GGVAG-VSWPVFR---WGGGKDKYFAKLG--KNMISVY 345 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~--~~~~~-----------~~~~~-~~~~~~~---~s~~dg~~la~~~--d~~i~iw 345 (712)
|.|+||++.+++.++++..-.... ..+.. ....+ ...|.+. .+| ||++|.... +++|.++
T Consensus 21 G~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~~~rVavI 99 (441)
T d1qnia2 21 GEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKANTRVARI 99 (441)
T ss_dssp CCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETTTTEEEEE
T ss_pred CcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCCCCEEEEE
Confidence 899999999999888775421110 00000 01111 1123333 368 999987765 8999999
Q ss_pred EcCCceecccccc-cccCeeeEEECCCCCeEEEEeecCCC----C--------CCCeEEEEEecCCccceeeeeeeeecc
Q 005140 346 ETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGG----G--------NQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 346 d~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~----~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|+.+++......+ ...+...++|+|+|+.+.++...... . .....+..++..+.+...+.... ...
T Consensus 100 Dl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p 178 (441)
T d1qnia2 100 RLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNL 178 (441)
T ss_dssp ETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCC
T ss_pred ECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCc
Confidence 9999987654433 34578999999999865443211100 0 00122344555555544444322 234
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
..+.++|+|+++++...+...... ... ........+.. ......++++|+|+++.++. ++ .+.+
T Consensus 179 ~~v~~spdGk~a~vt~~nse~~~~--------id~-~t~~~~d~i~v---~n~p~~~~~~~dGk~~~v~~-~~---v~vv 242 (441)
T d1qnia2 179 DNTDADYTGKYATSTCYNSERAVD--------LAG-TMRNDRDWVVV---FNVERIAAAVKAGNFKTIGD-SK---VPVV 242 (441)
T ss_dssp CCEEECSSSSEEEEEESCTTCCSS--------HHH-HTCSSBCEEEE---EEHHHHHHHHHTTCCBCCTT-CC---CCEE
T ss_pred cceEECCCCCEEEEEecCCCceEE--------Eec-cCcceEEEEEe---CCccceEEEecCCCEEEeCC-CC---cEEE
Confidence 557899999999887765321000 000 00000000111 01112245678998775532 33 4555
Q ss_pred EEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----------c---cccce
Q 005140 493 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----------A---EHFMA 558 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----------~---~~~~v 558 (712)
+...... .+..++ +.....+.+||||+++++++. .+++|.+||+.+...+.. . ..-..
T Consensus 243 d~~~~~~------v~~~IPvgksPhGv~vSPDGkyl~~~~~--~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgp 314 (441)
T d1qnia2 243 DGRGESE------FTRYIPVPKNPHGLNTSPDGKYFIANGK--LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGP 314 (441)
T ss_dssp ECSSSCS------SEEEECCBSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCE
T ss_pred EcccCCc------eEEEEeCCCCccCceECCCCCEEEEeCC--cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCc
Confidence 5543322 344454 335678999999999887754 389999999985432211 0 11223
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEecC-------c----eeee-------ecccceeeeEEecCCCCCCChh
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-------K----LLYR-------TLKDHFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-------~----~~~~-------~~~~~i~~~~w~p~~~~l~s~~ 618 (712)
...+|+++|..+.+... |..|..|++.. . .+.+ -|...+...+++|+|++|++.+
T Consensus 315 lh~~fd~~g~~yts~~~-----ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 315 LHTTFDGRGNAYTTLFI-----DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEEECSSSEEEEEETT-----TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred ccceecCCceEEEcccc-----cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 45689999977766666 89999999741 1 1111 1444566778999999999873
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.9e-10 Score=120.25 Aligned_cols=350 Identities=12% Similarity=0.104 Sum_probs=187.0
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccC---CCcccceEEEcCCCcEEEEEec---------Cc-eEEee
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKR---SYWTESFVQWSPLGTYLATVHR---------QG-AAVWG 240 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~v~~v~~Spdg~~lat~~~---------~~-i~iw~ 240 (712)
.|+.+. .|+....++.+.+|+.. .+.....+.. ....+....|||||++|+.... .+ ..|+|
T Consensus 23 ~W~~~~----~~~~~~~~g~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDT----EFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSS----CBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCC----cEEEEeCCCcEEEEECC-CCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 465442 34555556677788873 3333222222 2345677889999999888753 23 55888
Q ss_pred cccCcceeee--e--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcc-cccCCCC-
Q 005140 241 GANTFNRLMR--Y--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE-FAVGGTG- 314 (712)
Q Consensus 241 ~~~~~~~~~~--~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~-~~~~~~~- 314 (712)
+. ++..... . ....+....|||||++||..... .|.+.+..++..++........ +.-|...
T Consensus 98 ~~-~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~-----------nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~ 165 (465)
T d1xfda1 98 IP-HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-----------NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (465)
T ss_dssp SS-SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-----------EEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred cc-CCceeeccCccCCccccceeeeccCCceEEEEecc-----------eEEEEecCCCceEEEecccCcceeeccccch
Confidence 87 4443221 1 12347789999999999988754 6888887777655544322211 1000000
Q ss_pred ----CcCCCCcCeEEecCCCCCEEEEec--CCe---------------------------------EEEEEcCCceeccc
Q 005140 315 ----GVAGVSWPVFRWGGGKDKYFAKLG--KNM---------------------------------ISVYETESFTLIDK 355 (712)
Q Consensus 315 ----~~~~~~~~~~~~s~~dg~~la~~~--d~~---------------------------------i~iwd~~~~~~~~~ 355 (712)
.+.+. -..+.||| ||++||... +.. +.++++.++.....
T Consensus 166 vyeee~~~~-~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~ 243 (465)
T d1xfda1 166 LYEEEILKT-HIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (465)
T ss_dssp HHHHTTSSS-SEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred hhhhhhccc-cceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEE
Confidence 00000 11578999 999999875 332 33444433221100
Q ss_pred c----cc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-----ecceeEEECcCCCEE
Q 005140 356 K----SL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-----VSDCKMYWQSSGDYL 424 (712)
Q Consensus 356 ~----~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~g~~l 424 (712)
. .. ...-+..+.|+|++++++.+.. + ......+.+++..+++......... .......|+++|+.+
T Consensus 244 ~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n-R--~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLN-R--AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEE-T--TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EeccCcCccccceeeeeEEcCCCeEEEEEEc-c--ccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 0 00 0011567899999886665543 2 4455678888887765332221111 112345799999966
Q ss_pred EEE--EcccccccccccccEEEEEEecC---CcceeEEEecCCCCceEEE-EEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 425 AVK--VDRYTKTKKSTYTGFELFRIKER---DIPIEVLELDNKNDKIIAF-AWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 425 ~~~--~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~l~~h~~~v~~~-~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
++. +... + +..+..+.+... ........++.....|..+ +|+++++.+.+.+.......-++|.+.-.
T Consensus 321 ~fi~~se~~---g---~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~ 394 (465)
T d1xfda1 321 FFIRAIPQG---G---RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (465)
T ss_dssp EEEEEECCS---S---SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EEEEeeeec---c---cCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECC
Confidence 543 2211 1 222333333211 0111112233345556665 79999888887665321113456665421
Q ss_pred cccCceeEEEE-e-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 499 QHAGRVSKLTT-L-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 499 ~~~~~~~~~~~-~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
... ...++.. + .......+.|||+|++++..+.+...-.+.+++..+++.+..
T Consensus 395 g~~-~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~ 449 (465)
T d1xfda1 395 GNF-NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (465)
T ss_dssp TTC-CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred CCC-cceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEE
Confidence 111 0111111 1 122457899999999999776543234566777666665543
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.8e-13 Score=102.58 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=59.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY-KLDRAH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~-~~~~~~ 138 (712)
++|||+|||. +..+++|+++|++||.|.. +.+ +++||||||+|.++++|.+|++.|||. .++|+
T Consensus 2 n~l~V~nLp~------~~te~~L~~~F~~~G~i~~--~~~------~~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~- 66 (80)
T d2cqha1 2 NKLYIGNLSP------AVTADDLRQLFGDRKLPLA--GQV------LLKSGYAFVDYPDQNWAIRAIETLSGKVELHGK- 66 (80)
T ss_dssp CCEEEECCCT------TCCHHHHHHHHHHTTCCCS--SCE------EEETTEEEECCSCHHHHHHHHHHHTTTCEETTE-
T ss_pred CEEEEECCCC------CCCHHHHHHHHHHhCcEEE--eEE------ecccceEEEEECCHHHHHHHHHHhCCCeEECCE-
Confidence 4799999997 5559999999999998866 333 346899999999999999999999996 58885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 67 ~i~V~~a 73 (80)
T d2cqha1 67 IMEVDYS 73 (80)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 7877663
|
| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.1e-13 Score=109.94 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
...+|||.|||. +..+++|+++|+.||.+.. +.++.+..+|+++|||||+|.+.++|.+|++ +||..|+++
T Consensus 17 ~~~~i~v~nLp~------~~t~~di~~~F~~~g~~~~--~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~~i~gR 87 (112)
T d1wela1 17 AGFCVYLKGLPF------EAENKHVIDFFKKLDIVED--SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 87 (112)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHSCSSCBCTT--TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCeEEEEecCCC------cCcHHHHhhHHhhcccccc--ceeeecCcccceeeEEEEEECCHHHHHHHHH-cCCCcCCCE
Confidence 456999999998 5559999999999999876 5566666699999999999999999998886 999999986
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 88 -~i~V~~~~ 95 (112)
T d1wela1 88 -FIQVHPIT 95 (112)
T ss_dssp -CBEEEEEC
T ss_pred -EEEEEEcC
Confidence 66666543
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.2e-12 Score=104.74 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=59.0
Q ss_pred hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEe
Q 005140 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 76 ~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~ 144 (712)
+..++.|+++|++||+|.+ |.|+.|. +|+++|||||+|.+.++|.+|++.|||..++|+ .+.|..
T Consensus 38 ~~~ed~l~e~f~k~G~I~~--v~I~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr-~i~v~~ 102 (104)
T d1jmta_ 38 EFFEEVFTEMEEKYGEVEE--MNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ-PIHAEL 102 (104)
T ss_dssp HHHHHHHHHHHHHTCCEEE--EEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE-ECCEEE
T ss_pred hhhHHHHHHHhccCCCEEE--EEeecCC-CCCEeeEEEEEEechhHHHHHHHHHCCCEECCE-EEEEEE
Confidence 5678889999999999999 9999886 999999999999999999999999999999986 666543
|
| >d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Calcipressin-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=2e-12 Score=103.55 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=66.2
Q ss_pred CCCEEEECCCCC-C-CchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPV-V-PKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~-~-~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-++.|||+||+. + ++ +.+++.|+++|++||.|.. +.+. +++|||||+|.+.++|.+|++.|||+.++
T Consensus 4 ~~~~L~v~nl~~~v~~~---d~~k~~l~~lF~~~G~i~~--~~~~------k~~~~afV~f~~~~~A~~Ai~~lng~~~~ 72 (104)
T d1weya_ 4 GSSGLIACVANDDVFSE---SETRAKFESLFRTYDKDTT--FQYF------KSFKRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCCEEEEECCCGGGGST---TTHHHHHHHHHHTTCSSCE--EEEE------TTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CCceEEEEeCCchhcCc---HHHHHHHHHHhcccccceE--EEEe------cCCCEEEEEECCHHHHHHHHHHhcccccC
Confidence 367999999994 3 44 6788899999999999999 8776 46789999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .++|....
T Consensus 73 g~-~l~v~~a~ 82 (104)
T d1weya_ 73 GK-EMKLYFAQ 82 (104)
T ss_dssp TE-ECEEECCC
T ss_pred CC-EeEEeecc
Confidence 85 78877643
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=2.1e-12 Score=102.61 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc-
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA- 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~- 137 (712)
+++|||+|||. +..+++|+++|++||.|.. +.+..+ +|||||+|.+.++|.+|++.|||..++++
T Consensus 17 s~tl~V~nLp~------~~t~~~l~~~f~~~G~i~~--~~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~i~g~~ 82 (97)
T d1whya_ 17 TTRLWVGGLGP------NTSLAALAREFDRFGSIRT--IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CSCEEEECCCS------SCCHHHHHHHHHTTSCEEE--EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCEEEEcCCCC------CCCHHHHHHHHHhhcccce--Eeeecc------ccEEEeccCCHHHHHHHHHHhCCCEeCCCc
Confidence 57999999997 4458899999999999999 888654 68999999999999999999999999864
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+.+.|...
T Consensus 83 ~~l~v~~a 90 (97)
T d1whya_ 83 RRLRVDFA 90 (97)
T ss_dssp CBCEEEEC
T ss_pred eEEEEEeC
Confidence 46666653
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=8.5e-13 Score=102.76 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-++.|||+|||. +..+++|+++|++||.|.+ +.++. .++|||||+|.+.++|++|+. ++..++++
T Consensus 4 ~s~~lfV~nLp~------~~te~~L~~~F~~~G~v~~--v~~~~-----~~~gfafV~f~~~~~a~~a~~--~~~~i~g~ 68 (88)
T d1wf0a_ 4 GSSGVFVGRCTG------DMTEDELREFFSQYGDVMD--VFIPK-----PFRAFAFVTFADDQIAQSLCG--EDLIIKGI 68 (88)
T ss_dssp CCCEEEEESCCS------SSCHHHHHHHSTTTSCCCE--EECCS-----SCCSCCEEECSCHHHHHHTTT--CEEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHcCCceE--EEEee-----ccCceEEEEECCHHHHHHHHh--CCCEECCE
Confidence 467999999997 4559999999999999999 87653 578999999999999999985 78888884
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 69 -~l~v~~a 75 (88)
T d1wf0a_ 69 -SVHISNA 75 (88)
T ss_dssp -EEEEECC
T ss_pred -EeEEEeC
Confidence 7877653
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=2.6e-12 Score=101.91 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=61.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+.+|||+|||. +..+++|+++|++||.|.. +.+.. +|||||+|.+.++|++|++.|||..++++
T Consensus 15 ~~~i~V~Nlp~------~~~~~~L~~~F~~~G~v~~--~~i~~-------~g~afV~f~~~~~a~~Ai~~lng~~~~g~- 78 (98)
T d1wg4a_ 15 DFRVLVSGLPP------SGSWQDLKDHMREAGDVCY--ADVQK-------DGMGMVEYLRKEDMEYALRKLDDTKFRSH- 78 (98)
T ss_dssp SCEEEEECCCS------SCCHHHHHHHHTTSSCEEE--EEEET-------TTEEEEEESSHHHHHHHHHHHSSEEEECT-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHhhccccc--ccccc-------cceEEEEECCHHHHHHHHHHhCCCEeCCe-
Confidence 46899999997 5558999999999999999 88753 58999999999999999999999999886
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 79 ~i~v~~~ 85 (98)
T d1wg4a_ 79 EGETSYI 85 (98)
T ss_dssp TSCEEEE
T ss_pred EEEEEEE
Confidence 5555443
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.7e-14 Score=111.48 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=62.9
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEE-----eccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWM-----PVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
+.|||+|||. +..+++|+++|++||.|.. +.+ ..+..++++||||||+|.++++|.+|+. |||+.+
T Consensus 2 RrlyVgNLp~------~~te~~l~~~F~~~g~~~~--~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g~~~ 72 (90)
T d1u2fa_ 2 RRLYVGNIPF------GITEEAMMDFFNAQMRLGG--LTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIF 72 (90)
T ss_dssp CEEEECSCCT------TCCTTHHHHHHHHHHTTTT--SCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGG-GSSCCS
T ss_pred CEEEEcCCCC------ccchHHHHHHHHhhCcEEE--EEEeccceeeecccCCCceEEEEEeCCHHHHHHHHh-hCCcEE
Confidence 5899999997 5558899999999998766 444 3455688999999999999999999985 999999
Q ss_pred CCceEEEEEe
Q 005140 135 DRAHIFAVNM 144 (712)
Q Consensus 135 ~~~~~l~v~~ 144 (712)
.++ .++|.+
T Consensus 73 ~Gr-~l~V~r 81 (90)
T d1u2fa_ 73 QGQ-SLKIRR 81 (90)
T ss_dssp SSS-CCCCBC
T ss_pred CCE-EEEECC
Confidence 986 777753
|
| >d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=2.8e-12 Score=101.99 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=63.3
Q ss_pred CCCCEEEECCCCCCCchhhh-hhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHH--HhCCCc
Q 005140 57 GFGNIIVVDNLPVVPKEKFE-KLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKE--KTNGYK 133 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~-~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~--~~~~~~ 133 (712)
..+++|||+|||. + .++..|.++|++||.|.+ +.+..+ ||||||+|.+.++|..|++ .+++..
T Consensus 16 ~~~~~l~v~nLp~------~~~te~~l~~~F~~fG~V~~--v~~~~~------k~~afV~f~~~~~A~~Ai~~~~~~~~~ 81 (99)
T d1x4fa1 16 ELGRVIHLSNLPH------SGYSDSAVLKLAEPYGKIKN--YILMRM------KSQAFIEMETREDAMAMVDHCLKKALW 81 (99)
T ss_dssp CCCCEEEEESCCC------SSCCSHHHHTTTTTTSCCSE--EEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCC
T ss_pred CCCCEEEEeCCcC------CccCHHHHHhhhccccceeE--EEEeec------CCcEEEEecchHHHHHHHHHHhcCCce
Confidence 3578999999995 2 247889999999999999 888754 5899999999999999998 578888
Q ss_pred cCCceEEEEEeecc
Q 005140 134 LDRAHIFAVNMFDD 147 (712)
Q Consensus 134 ~~~~~~l~v~~~~~ 147 (712)
+.|+ .++|.....
T Consensus 82 ~~gr-~l~V~~s~~ 94 (99)
T d1x4fa1 82 FQGR-CVKVDLSEK 94 (99)
T ss_dssp SSSS-CCEEEEECS
T ss_pred ECCE-EEEEEEcCC
Confidence 8885 787775543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.27 E-value=5.7e-09 Score=105.45 Aligned_cols=125 Identities=15% Similarity=0.228 Sum_probs=82.2
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC----------------CceeEEEEccCCCe
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----------------KQANALFWSPSGRF 526 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----------------~~v~~l~~spdg~~ 526 (712)
......++|+|+|+++.+...... +|.+|++...... .........- .....+.++|||++
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~--~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 268 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGN--RICEYVIDPATHM-PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTTCC-EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CCceEEEEECCCCceEEEeccCCC--EEEEEEecCCCce-EEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence 456788999999999988876442 8999998754432 1112222110 02356899999999
Q ss_pred EEEEeccC---CCceEEEEECCcceeee------e--ccccceeeEEECC-CCCEEEEEEccceeccccEEEEEecCcee
Q 005140 527 IVLAGLKG---FNGQLEFYNVDELETMA------T--AEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 527 l~~~~~~~---~dg~v~iwd~~~~~~~~------~--~~~~~v~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
|+++..+. ..+.|..|++.....+. . .......+++++| +|++|+++... ++.|.+|++++..+
T Consensus 269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~----s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ----EGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS----SCEEEEEEEETTEE
T ss_pred EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC----CCeEEEEEEeCCcC
Confidence 99876532 13347777765321111 1 1224567899998 89999888763 79999999986644
|
| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.1e-11 Score=96.30 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT--NGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~--~~~~~~ 135 (712)
-+++|+|+|||.- ..++++|.++|++||.|.. +.++.+ +|||||+|++.++|..|++.+ ++..+.
T Consensus 7 ~sr~v~v~nl~~~-----~~t~~eL~~lF~~fG~I~~--i~i~~~------k~~afV~f~~~~~A~~A~~~l~~~~~~~~ 73 (89)
T d1x4da1 7 TRRVVHIMDFQRG-----KNLRYQLLQLVEPFGVISN--HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVF 73 (89)
T ss_dssp CCCEEEEESCCCS-----SSHHHHHHTTTGGGSCEEE--EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCcEEEEECCCCC-----cCCHHHHHHHHHhhCCeEE--EEeecc------ceEEEEEEcchhhHHHHHHHHhhCCCccC
Confidence 4679999999962 1358999999999999999 988765 479999999999999999965 677888
Q ss_pred CceEEEEEeecc
Q 005140 136 RAHIFAVNMFDD 147 (712)
Q Consensus 136 ~~~~l~v~~~~~ 147 (712)
++ .++|.....
T Consensus 74 gr-~l~V~~s~~ 84 (89)
T d1x4da1 74 GK-PVRVHLSQK 84 (89)
T ss_dssp TE-ECEEEEECC
T ss_pred Cc-eEEEEECCC
Confidence 85 888876543
|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein 2, PTBP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.8e-11 Score=95.28 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=62.6
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCc
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT--NGYK 133 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~--~~~~ 133 (712)
..-+++|||+|||. +..+++|+++|++||.|.. +.+..+ +|||||+|.+.++|.+|++.+ ++..
T Consensus 5 ~~Ps~~l~V~nLp~------~~t~~~L~~~f~~~G~i~~--v~~~~~------~~~afV~f~~~e~A~~a~~~~~~~~~~ 70 (88)
T d2cq1a1 5 GAPSRVLHIRKLPG------EVTETEVIALGLPFGKVTN--ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH 70 (88)
T ss_dssp SSCCSEEEEESCCT------TCCHHHHHHTTTTTSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCEEEEeCCCC------CCCHHHHHHHHhccccccc--cccccc------ceEEEEEeCCHHHHHHHHHHHccCCCc
Confidence 34678999999997 5559999999999999999 888754 489999999999999999975 5667
Q ss_pred cCCceEEEEEee
Q 005140 134 LDRAHIFAVNMF 145 (712)
Q Consensus 134 ~~~~~~l~v~~~ 145 (712)
+.+ +.+.+...
T Consensus 71 ~~g-~~l~v~~s 81 (88)
T d2cq1a1 71 LRN-QPIYIQYS 81 (88)
T ss_dssp ETT-EECEEEEC
T ss_pred cCC-CEEEEEEC
Confidence 777 47777654
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.2e-11 Score=96.52 Aligned_cols=88 Identities=15% Similarity=0.315 Sum_probs=71.4
Q ss_pred CCCCEEEECCC--CC---CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 57 GFGNIIVVDNL--PV---VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 57 ~~~~~~~v~~l--p~---~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
..+.+|+|.|| |. ..++-+.-++++|++.|++||.|.. +.++.+ ..+|||||+|.++++|.+|+..|||
T Consensus 6 ~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~--v~~~~~----~~~G~~fV~f~~~e~A~~A~~~lng 79 (99)
T d2dita1 6 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK--LLLFDR----HPDGVASVSFRDPEEADYCIQTLDG 79 (99)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE--EEEETT----CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEE--EeccCC----CCccEEEEEECCHHHHHHHHHHhCC
Confidence 46789999999 53 1222244578899999999999999 988765 4679999999999999999999999
Q ss_pred CccCCceEEEEEeecccccc
Q 005140 132 YKLDRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~~~~~~ 151 (712)
..++++ .+.|..+....+|
T Consensus 80 ~~~~gr-~i~v~~~~g~~~~ 98 (99)
T d2dita1 80 RWFGGR-QITAQAWDGTTDY 98 (99)
T ss_dssp CEETTE-ECEEEECCSCCCS
T ss_pred cEECCE-EEEEEEeCCcCCC
Confidence 999995 8888887554443
|
| >d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3e-11 Score=96.91 Aligned_cols=85 Identities=19% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCEEEECCC--CC--CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCC--CcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 59 GNIIVVDNL--PV--VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQ--KSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 59 ~~~~~v~~l--p~--~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~--~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
+++|++.|+ |. ..+..++.+.++|++.|++||.|.+ +.||+++.+. ..+|++||+|.+.++|.+|+..|||.
T Consensus 4 s~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~--v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr 81 (104)
T d1o0pa_ 4 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS--IEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81 (104)
T ss_dssp CSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEE--EECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSC
T ss_pred CcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEE--EEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCC
Confidence 568999999 52 3344566788899999999999999 9999887553 45799999999999999999999999
Q ss_pred ccCCceEEEEEeec
Q 005140 133 KLDRAHIFAVNMFD 146 (712)
Q Consensus 133 ~~~~~~~l~v~~~~ 146 (712)
.++++ .+.+..++
T Consensus 82 ~f~gR-~v~v~f~~ 94 (104)
T d1o0pa_ 82 KFANR-VVVTKYCD 94 (104)
T ss_dssp CSSSS-CCEEEEEC
T ss_pred EECCe-EEEEEEcC
Confidence 99996 77777665
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.3e-11 Score=110.20 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=69.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
...+|||+|||. ...+.+|+++|+.||.|.. +.++.|+.+|+++|||||+|.++++|.+|++ +++..++|+
T Consensus 96 ~~~~i~V~~lp~------~~te~~L~~~f~~~G~v~~--~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~~~G~ 166 (183)
T d1u1qa_ 96 TVKKIFVGGIKE------DTEEHHLRDYFEQYGKIEV--IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGH 166 (183)
T ss_dssp CCSEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSCEEETTE
T ss_pred ccceeEEccCCC------cCCHHHHhhhhccCCceee--eeeecccccCccceeEEEEECCHHHHHHHHH-hCCCeECCE
Confidence 457999999997 4448999999999999999 9999999999999999999999999999997 788888874
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 167 -~i~V~~ 172 (183)
T d1u1qa_ 167 -NCEVRK 172 (183)
T ss_dssp -EEEEEE
T ss_pred -EEEEEe
Confidence 888865
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=4.1e-11 Score=90.36 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=59.6
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
++.|+|.|+|. +..+..| +.|++||.|.+ +.++ +.+|||||+|.++++|++|++ +||..++++-
T Consensus 4 ~~wV~V~G~p~------~~~~~il-~~F~~~G~I~~--~~~~------~~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~~ 67 (81)
T d1wwha1 4 DTWVTVFGFPQ------ASASYIL-LQFAQYGNILK--HVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESI 67 (81)
T ss_dssp GGEEEEECCCG------GGHHHHH-HHHHTTSCEEE--EEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred ccEEEEECCCh------HHHHHHH-HHHHhhhhhhe--EEec------CCCCEEEEEEcccHHHHHHHh-cCCCeECCcE
Confidence 35799999997 5556655 57999999999 7764 457999999999999999996 9999999875
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|....+
T Consensus 68 ~vgV~~~~~ 76 (81)
T d1wwha1 68 MIGVKPCID 76 (81)
T ss_dssp ECEEEECCC
T ss_pred EEEEEeCCC
Confidence 566766554
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=5e-11 Score=95.81 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=60.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN--GYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~--~~~~~ 135 (712)
-+++|||.|||. ...+.+|+++|++||.|.. +.+.. .||||||+|.+.++|..|++.++ +..+.
T Consensus 14 ps~~l~v~nlp~------~~te~~l~~~F~~fG~I~~--~~~~~------~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~ 79 (104)
T d1wexa_ 14 VSPVVHVRGLCE------SVVEADLVEALEKFGTICY--VMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCSEEEEESCCS------SCCHHHHHHHHTTTSCEEE--EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHhhhhcccceE--EEEEe------cceeEEEEeCCHHHHHHHHHHHcCCCcEEe
Confidence 477999999996 4458999999999999999 88864 46899999999999999999874 55566
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .++|...
T Consensus 80 g~-~l~v~~s 88 (104)
T d1wexa_ 80 GQ-QAFFNYS 88 (104)
T ss_dssp SS-BCEEEEC
T ss_pred eE-EEEEEEc
Confidence 64 7777654
|
| >d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Alkylation repair AlkB homolog 8, ALKBH8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2e-11 Score=97.10 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=54.7
Q ss_pred CCEEEE--CCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 59 GNIIVV--DNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 59 ~~~~~v--~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
...++| +|||. +..++.|+++|++||.|.. +.++.+ +|||||+|.+.++|.+|++.|||+.+.
T Consensus 18 t~~l~V~ng~L~~------~vte~~L~~~F~~~G~i~~--i~~~~~------k~~aFV~f~~~e~A~~A~~~lng~~i~ 82 (101)
T d2cq2a1 18 TQSLVVANGGLGN------GVSRNQLLPVLEKCGLVDA--LLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVV 82 (101)
T ss_dssp CSEEEEETCTGGG------TCCHHHHHHHHHHHSCEEE--EECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CceEEEECCCCCC------CCCHHHHHHHHHhhCcccE--EeeccC------ccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence 457777 66997 5559999999999999999 888765 579999999999999999999999873
|
| >d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=6.5e-11 Score=96.51 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=56.7
Q ss_pred CCCCEE-EECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCH-HHHHHHHHHhCCCcc
Q 005140 57 GFGNII-VVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP-QEAELAKEKTNGYKL 134 (712)
Q Consensus 57 ~~~~~~-~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~-~~a~~a~~~~~~~~~ 134 (712)
..++++ ||+|||. ..++++|+++|++||+|.. |.++.+ +|||||.|.++ ++|..|+..+|+..+
T Consensus 8 ~~g~~~~fvgnL~~------~~tee~Lk~~F~~fG~V~~--v~i~~~------kg~gfV~F~~~~~~A~~a~~~~~~~~l 73 (113)
T d1owxa_ 8 KIGCLLKFSGDLDD------QTCREDLHILFSNHGEIKW--IDFVRG------AKEGIILFKEKAKEALGKAKDANNGNL 73 (113)
T ss_dssp CCCCEEEEEESCCS------SCCHHHHHHHTCSSCCEEE--EECCTT------CSEEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred CCCCeEEEECCCCC------CCCHHHHHHHHHhcCChhe--EEEecC------CceEEEEecCcHHHHHHHHHHhcCCce
Confidence 345666 9999997 4459999999999999999 999854 69999999985 789999999999877
Q ss_pred CCc
Q 005140 135 DRA 137 (712)
Q Consensus 135 ~~~ 137 (712)
.++
T Consensus 74 ~~~ 76 (113)
T d1owxa_ 74 QLR 76 (113)
T ss_dssp CTT
T ss_pred ecC
Confidence 554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.09 E-value=1.7e-08 Score=101.89 Aligned_cols=280 Identities=11% Similarity=0.026 Sum_probs=141.3
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeee--ecC-CCeeEEEecCCCCE--EEEEcCCCCCCCcCCCccEEE
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR--YAH-PQVKLIDFSPGEKY--LVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~--~~~-~~v~~i~~Spdg~~--l~t~s~d~~~~~~~~~~~~I~ 288 (712)
...+.|+|||+|++|++...+++..|.+......... ... .....+.++|+++. ++++.... ++|.
T Consensus 40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~---------~~v~ 110 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPP---------YAVY 110 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTT---------CCEE
T ss_pred CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCC---------CEEE
Confidence 3456799999999999988877776655522222222 122 23778999999984 44433221 3444
Q ss_pred EEEccC-CceeeeccCCCc-cc--ccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCC-ceeccc--cc--
Q 005140 289 IFDVRT-GKVMRDFKGSAD-EF--AVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES-FTLIDK--KS-- 357 (712)
Q Consensus 289 iwd~~~-g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~-~~~~~~--~~-- 357 (712)
.+.+.. +.....+..... .. .......+.+-.-..+.|+| ||++++... .+.|.+|+... +.+... ..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T d1jofa_ 111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred EeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeec
Confidence 443311 111111100000 00 00000000000001589999 999888877 67888887653 222211 11
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
....+...++|+|+++++.+. ......|..|+................. .+.+
T Consensus 190 ~~g~gPr~i~f~pdg~~~yv~------~e~~~~V~v~~~~~~~~~~~~~~~~~~~-----~~~~---------------- 242 (365)
T d1jofa_ 190 DPGDHPRWVAMHPTGNYLYAL------MEAGNRICEYVIDPATHMPVYTHHSFPL-----IPPG---------------- 242 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEE------ETTTTEEEEEEECTTTCCEEEEEEEEES-----SCTT----------------
T ss_pred CCCCceEEEEECCCCceEEEe------ccCCCEEEEEEecCCCceEEEEeeeecc-----cccc----------------
Confidence 122457889999999987653 2223344444443322111100000000 0000
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC-C--CCCeEEEEEeecccccCceeEEEEeC--C
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD-S--PRPDISFYSMRTAQHAGRVSKLTTLK--G 512 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d-~--~~~~v~i~d~~~~~~~~~~~~~~~~~--~ 512 (712)
.+........+......+.++|+|++|+++... . ....|..|++.......+...+.... +
T Consensus 243 --------------~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G 308 (365)
T d1jofa_ 243 --------------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG 308 (365)
T ss_dssp --------------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC
T ss_pred --------------ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC
Confidence 000000000113345678999999999887542 1 11147777765422111111112111 3
Q ss_pred CceeEEEEcc-CCCeEEEEeccCCCceEEEEECCc
Q 005140 513 KQANALFWSP-SGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 513 ~~v~~l~~sp-dg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
.....++++| +|++|++++.. ++.|.+|+++.
T Consensus 309 ~~p~~i~~~p~~G~~l~va~~~--s~~v~v~~~~~ 341 (365)
T d1jofa_ 309 GHSNAVSPCPWSDEWMAITDDQ--EGWLEIYRWKD 341 (365)
T ss_dssp TTCCCEEECTTCTTEEEEECSS--SCEEEEEEEET
T ss_pred CCccEEEecCCCCCEEEEEeCC--CCeEEEEEEeC
Confidence 3567899998 89999888642 79999998764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.98 E-value=4.1e-08 Score=94.89 Aligned_cols=246 Identities=10% Similarity=0.018 Sum_probs=131.8
Q ss_pred EEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 259 IDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 259 i~~Spd--g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
+..||| |+++|..+.+ .|++.|+.+|+..+ +..+..... ..+||| ||+.||.
T Consensus 4 ~~~sPdi~G~~v~f~~~~-----------dl~~~d~~~g~~~~-Lt~~~~~~~-------------~p~~SP-DG~~iaf 57 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCD-----------DLWEHDLKSGSTRK-IVSNLGVIN-------------NARFFP-DGRKIAI 57 (281)
T ss_dssp CCEEEEEETTEEEEEETT-----------EEEEEETTTCCEEE-EECSSSEEE-------------EEEECT-TSSEEEE
T ss_pred cccCCCCCCCEEEEEeCC-----------cEEEEECCCCCEEE-EecCCCccc-------------CEEECC-CCCEEEE
Confidence 357899 9999987654 68899998777644 433333221 589999 9999997
Q ss_pred ec--C-----CeEEEEEcCCceecccccc------cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 337 LG--K-----NMISVYETESFTLIDKKSL------KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 337 ~~--d-----~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
.. + ..|.+++..++....-... .........|+|+|+.|++..... .......+...+........
T Consensus 58 ~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 136 (281)
T d1k32a2 58 RVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ-PFSSMTCLYRVENDGINFVP 136 (281)
T ss_dssp EEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS-SSTTCCEEEEEEGGGTEEEE
T ss_pred EEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccC-CCccceeeeeecCCCceeEE
Confidence 64 2 2467777776654321111 112356789999999998743221 11222334444443322211
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEccccccccc-cc--ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS-TY--TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~-~~--~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
. . .......|.+++..++............ .. ....+...... .. .....+........++++ .++.
T Consensus 137 ~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~--~~~~ 206 (281)
T d1k32a2 137 L-N---LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG--AF--KKIVDMSTHVSSPVIVGH--RIYF 206 (281)
T ss_dssp C-C---SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT--EE--EEEECCSSCCEEEEEETT--EEEE
T ss_pred e-c---CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccc--ce--eeccCCccccceeeeecc--ccce
Confidence 1 1 1111224556665555433322211111 11 11222222211 11 111123444455556554 4555
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
.........|.++++.++.. +.+.. ........|||||+.|+... ++.|+++|+.+++...
T Consensus 207 ~~~~~~~~~l~~~d~~g~~~----~~lt~--~~~~~~~~~SpDG~~I~f~~----~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 207 ITDIDGFGQIYSTDLDGKDL----RKHTS--FTDYYPRHLNTDGRRILFSK----GGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EECTTSSCEEEEEETTSCSC----EECCC--CCSSCEEEEEESSSCEEEEE----TTEEEEECTTTCCEEE
T ss_pred ecccccccceEEEeCCCCce----EEeec--CCCcccccCcCCCCEEEEEe----CCEEEEEECCCCCEEE
Confidence 55443344788888865442 12222 22234457999999998865 6889999999776543
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.6e-10 Score=102.10 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=60.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
++|||+|||. ...+++|+++|++||.|.+ +.++.|..+|.++|||||+|.+.++|.+|+... +..+..+
T Consensus 7 r~lfV~nLp~------~~te~~L~~~F~~~G~v~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~~~~~~~ 75 (183)
T d1u1qa_ 7 RKLFIGGLSF------ETTDESLRSHFEQWGTLTD--CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR-PHKVDGR 75 (183)
T ss_dssp HEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHTC-SCEETTE
T ss_pred CEEEEECCCC------CCCHHHHHHHHHHcCCEEE--EEeeecccCCCccCceecccCCHHHHHHHHHhc-CCccccc
Confidence 4899999997 4559999999999999999 999999999999999999999999999998854 4445543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.91 E-value=1.8e-07 Score=90.22 Aligned_cols=249 Identities=9% Similarity=-0.032 Sum_probs=138.0
Q ss_pred EEecCCC--CCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 324 FRWGGGK--DKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 324 ~~~s~~d--g~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
+..|| | |+.+|..+++.|.++++.+++.. .+......+...+|||||+.||+..... +......||+++....+.
T Consensus 4 ~~~sP-di~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~-~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 4 LLLNP-DIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRG-SSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CCEEE-EEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEES-TTCCEEEEEEEETTTTEE
T ss_pred cccCC-CCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeC-CCCCceEEEEEEecCCce
Confidence 45689 9 99999999889999999977653 2223334578899999999999754332 233445788888776653
Q ss_pred eee--eee----eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC
Q 005140 402 LRQ--KNL----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 402 ~~~--~~~----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
... ... .........|+|+|+.|++....... .....++.+...+... ... +..... ..|.+++
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~--~~~~~~-~~~~~~~ 150 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF-----SSMTCLYRVENDGINF--VPL--NLGPAT-HILFADG 150 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS-----TTCCEEEEEEGGGTEE--EEC--CSCSCS-EEEEETT
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCC-----ccceeeeeecCCCcee--EEe--cCCccc-eeeecCC
Confidence 321 111 11223456799999999886554321 1112334444332221 111 122222 3455666
Q ss_pred CEEEEEEcCCCC---------CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 476 HRFAVIHGDSPR---------PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 476 ~~l~~~~~d~~~---------~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
..++........ ............. ..............++++. ++..........|+++|+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g 223 (281)
T d1k32a2 151 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-----KKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDG 223 (281)
T ss_dssp EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-----EEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTS
T ss_pred CeEEEeeccccceeeeeccCCcceeeeeccccce-----eeccCCccccceeeeeccc--cceecccccccceEEEeCCC
Confidence 555554332110 0112222211110 1111122234556666653 44333222256788899986
Q ss_pred ceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeec
Q 005140 547 LETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL 598 (712)
Q Consensus 547 ~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~ 598 (712)
.+..............|||||+.|+.... +.++++++.+.......
T Consensus 224 ~~~~~lt~~~~~~~~~~SpDG~~I~f~~~------~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 224 KDLRKHTSFTDYYPRHLNTDGRRILFSKG------GSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp CSCEECCCCCSSCEEEEEESSSCEEEEET------TEEEEECTTTCCEEECC
T ss_pred CceEEeecCCCcccccCcCCCCEEEEEeC------CEEEEEECCCCCEEEec
Confidence 65543322222333579999999987554 77888888876655554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.83 E-value=1.7e-06 Score=84.36 Aligned_cols=244 Identities=8% Similarity=-0.002 Sum_probs=139.0
Q ss_pred ceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 246 NRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 246 ~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
+.+.+++... +..++++|||+++++...+ ++|..|+. .|+............ .+
T Consensus 19 ~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~----------~~I~~i~p-~g~~~~~~~~~~~~~--------------gl 73 (302)
T d2p4oa1 19 KIITSFPVNTFLENLASAPDGTIFVTNHEV----------GEIVSITP-DGNQQIHATVEGKVS--------------GL 73 (302)
T ss_dssp EEEEEECTTCCEEEEEECTTSCEEEEETTT----------TEEEEECT-TCCEEEEEECSSEEE--------------EE
T ss_pred cEEEECCCCCCcCCEEECCCCCEEEEeCCC----------CEEEEEeC-CCCEEEEEcCCCCcc--------------eE
Confidence 3445554433 8899999999999988888 88888884 455333222222222 68
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+|++ ||+++++.. ++.+..++.......... .........+++.+++++++. ......+|.++.....
T Consensus 74 a~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~-------~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 74 AFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTA-------DSYRGAIWLIDVVQPS 145 (302)
T ss_dssp EECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEE-------ETTTTEEEEEETTTTE
T ss_pred EEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEee-------ccccccceeeeccCCc
Confidence 9999 999888776 777777775432211111 012234678889999887765 3344466665543221
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
. .++......... ...........+++ ++.++.+
T Consensus 146 -----------------------~------------------~~~~~~~~~~~~---~~~~~~~~~ngi~~--~~~~l~~ 179 (302)
T d2p4oa1 146 -----------------------G------------------SIWLEHPMLARS---NSESVFPAANGLKR--FGNFLYV 179 (302)
T ss_dssp -----------------------E------------------EEEEECGGGSCS---STTCCSCSEEEEEE--ETTEEEE
T ss_pred -----------------------c------------------eeEecCCcccee---eccCcccccccccc--cCCceee
Confidence 0 111111000000 00011223344444 4566666
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-eeec--cccc
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MATA--EHFM 557 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~~~~--~~~~ 557 (712)
+.... ..|..+++............. .......++++++|+++++... ++.|..++...... +... ....
T Consensus 180 ~~~~~--~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~---~~~V~~i~p~G~~~~~~~~~~~~~~ 252 (302)
T d2p4oa1 180 SNTEK--MLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHI---YNSVVRIAPDRSTTIIAQAEQGVIG 252 (302)
T ss_dssp EETTT--TEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBT---TCCEEEECTTCCEEEEECGGGTCTT
T ss_pred ecCCC--CeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcC---CCcEEEECCCCCEEEEEecCCCCCC
Confidence 65533 277777765432211111111 2334577999999997777665 78899998874332 2222 3356
Q ss_pred eeeEEE---CCCCCEEEEEEc
Q 005140 558 ATDVEW---DPTGRYVATAVT 575 (712)
Q Consensus 558 v~~~~~---spdg~~l~t~s~ 575 (712)
.++++| ++|++.|+.++.
T Consensus 253 pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 253 STAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp EEEEEECCSTTTTTEEEEEEC
T ss_pred ceEEEEcCCCCCCCEEEEECC
Confidence 789999 778888876654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.80 E-value=6.2e-06 Score=80.52 Aligned_cols=267 Identities=10% Similarity=0.095 Sum_probs=142.9
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
.+....++|.|+|+.+++....... +..++.|..||..++............. .+.+. .+.|.+ ++.
T Consensus 17 ~~g~EGpa~d~dG~ly~~~~~~~~~---~~~~g~I~r~d~~~~~~~~~~~~~~~~~----~g~P~-----Gl~~~~-dg~ 83 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGDFYIVAPEVEVN---GKPAGEILRIDLKTGKKTVICKPEVNGY----GGIPA-----GCQCDR-DAN 83 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEET---TEECCEEEEECTTTCCEEEEECCEETTE----ECCEE-----EEEECS-SSS
T ss_pred CCCCeEeEEeCCCCEEEEECccccc---cccCCEEEEEECCCCcEEEEECCccccC----CCcce-----eEEEeC-CCC
Confidence 3457889999999977764432000 0112578889987776433222111100 00011 488999 998
Q ss_pred EEEEec-CCeEEEEEcCCceeccccc----ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 333 YFAKLG-KNMISVYETESFTLIDKKS----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
.++.+. .+.|..++........... ......+++++.|+|++.++- ..... ....... ..
T Consensus 84 ~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd-----~~~~~--------~~~~~~~--~~ 148 (314)
T d1pjxa_ 84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA-----PAGEV--------APADYTR--SM 148 (314)
T ss_dssp EEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE-----CBCBC--------TTSCCCB--TT
T ss_pred EEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEec-----CccCc--------ccccccc--ee
Confidence 666665 6778888876543221110 011235778888888766541 00000 0000000 00
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC----EEEEEEc
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH----RFAVIHG 483 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~----~l~~~~~ 483 (712)
......-..+.++|+...+. . +-...+.++|+|+++ +|+++..
T Consensus 149 ~~~~G~v~~~~~dg~~~~~~------------------------------~---~~~~pNGi~~~~d~d~~~~~lyv~d~ 195 (314)
T d1pjxa_ 149 QEKFGSIYCFTTDGQMIQVD------------------------------T---AFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp SSSCEEEEEECTTSCEEEEE------------------------------E---EESSEEEEEEEECTTSCEEEEEEEET
T ss_pred ccCCceEEEEeecCceeEee------------------------------C---CcceeeeeEECCCCCcceeEEEEEee
Confidence 00000001233444332111 0 012346789999875 4555543
Q ss_pred -CCCCCeEEEEEeecccccCceeEEEEeCCC---ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccc
Q 005140 484 -DSPRPDISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM 557 (712)
Q Consensus 484 -d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~ 557 (712)
.+ .|..|++..............+... ....+++.++|+..++... .+.|.+||.+++..+.. .....
T Consensus 196 ~~~---~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~---~g~I~~~dp~~g~~~~~i~~p~~~ 269 (314)
T d1pjxa_ 196 PTK---KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG---SSHIEVFGPDGGQPKMRIRCPFEK 269 (314)
T ss_dssp TTT---EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET---TTEEEEECTTCBSCSEEEECSSSC
T ss_pred ccc---ceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC---CCEEEEEeCCCCEEEEEEECCCCC
Confidence 33 7888887643211111123333322 2467999999997776654 78999999987766544 33467
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++++|.||++.|...... .+.|.-.++.
T Consensus 270 ~t~~afg~d~~~lyVt~~~----~g~i~~~~~~ 298 (314)
T d1pjxa_ 270 PSNLHFKPQTKTIFVTEHE----NNAVWKFEWQ 298 (314)
T ss_dssp EEEEEECTTSSEEEEEETT----TTEEEEEECS
T ss_pred EEEEEEeCCCCEEEEEECC----CCcEEEEECC
Confidence 8899999999866555441 5666666543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.78 E-value=3.7e-06 Score=80.77 Aligned_cols=236 Identities=14% Similarity=0.158 Sum_probs=139.6
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC-eEEecCCCCCEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~dg~~l 334 (712)
...|+++|+|+.+++-... ..|++||. +|+.++.+....... ....+| .+.+.+..+.++
T Consensus 25 P~gvavd~dg~i~VaD~~n----------~rI~v~d~-~G~~~~~~~~~~~~~--------~~~~~p~~~~~~~~~~~~~ 85 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNN----------HRIQIFDK-EGRFKFQFGECGKRD--------SQLLYPNRVAVVRNSGDII 85 (279)
T ss_dssp EEEEEECTTCCEEEEEGGG----------TEEEEECT-TSCEEEEECCBSSST--------TCBSSEEEEEEETTTTEEE
T ss_pred ccEEEEcCCCCEEEEECCC----------CEEEEEeC-CCCEEEEecccCCCc--------ccccccccccccccccccc
Confidence 5789999999977775555 78999995 688887774322110 000111 234444134455
Q ss_pred EEec--CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 335 AKLG--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 335 a~~~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
+... ++.|.+++.. +....... ........++..++|.+++. .....+++
T Consensus 86 ~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~-------~~~~~~~~------------------- 138 (279)
T d1q7fa_ 86 VTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVV-------ECKVMRVI------------------- 138 (279)
T ss_dssp EEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEE-------ETTTTEEE-------------------
T ss_pred eeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEE-------eeccceee-------------------
Confidence 4443 5677777654 33222211 12233567777777776654 11122222
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
.++++|+.+.... ...+......+++.++|+.+++....+ .|+
T Consensus 139 ----~~~~~g~~~~~~g------------------------------~~~~~~~~~~i~~d~~g~i~v~d~~~~---~V~ 181 (279)
T d1q7fa_ 139 ----IFDQNGNVLHKFG------------------------------CSKHLEFPNGVVVNDKQEIFISDNRAH---CVK 181 (279)
T ss_dssp ----EECTTSCEEEEEE------------------------------CTTTCSSEEEEEECSSSEEEEEEGGGT---EEE
T ss_pred ----EeccCCceeeccc------------------------------ccccccccceeeeccceeEEeeecccc---cee
Confidence 2355555433211 112345667788888887666655555 899
Q ss_pred EEEeecccccCceeEEEEeCC----CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----ccccceeeEEE
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----AEHFMATDVEW 563 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~----~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----~~~~~v~~~~~ 563 (712)
+|+... . .+.++.. .....+++.|+|+.+++-.. + ++.|.+|+.+ ++.+.+ ........+++
T Consensus 182 ~~d~~G-~------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~-~-~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav 251 (279)
T d1q7fa_ 182 VFNYEG-Q------YLRQIGGEGITNYPIGVGINSNGEILIADNH-N-NFNLTIFTQD-GQLISALESKVKHAQCFDVAL 251 (279)
T ss_dssp EEETTC-C------EEEEESCTTTSCSEEEEEECTTCCEEEEECS-S-SCEEEEECTT-SCEEEEEEESSCCSCEEEEEE
T ss_pred eeecCC-c------eeeeecccccccCCcccccccCCeEEEEECC-C-CcEEEEECCC-CCEEEEEeCCCCCCCEeEEEE
Confidence 998642 1 4444431 13578999999986665432 1 4579999865 555433 22346789999
Q ss_pred CCCCCEEEEEEccceeccccEEEEEec
Q 005140 564 DPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 564 spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.|+|.+++ +.. ++.|++|.+.
T Consensus 252 ~~dG~l~V-~~~-----n~~v~~fr~~ 272 (279)
T d1q7fa_ 252 MDDGSVVL-ASK-----DYRLYIYRYV 272 (279)
T ss_dssp ETTTEEEE-EET-----TTEEEEEECS
T ss_pred eCCCcEEE-EeC-----CCeEEEEEee
Confidence 99997554 456 7899999976
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.77 E-value=8.2e-07 Score=84.51 Aligned_cols=231 Identities=10% Similarity=0.047 Sum_probs=129.1
Q ss_pred ceEEEcCCCcEEEEEe-cCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 217 SFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
..++++++|.+.++.. ..+ +..++..+.......+. ......++++++|+.+++.... +.+++++..
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~----------~~i~~~~~~ 86 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNN----------RVVTLAAGS 86 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTT----------EEEEECTTC
T ss_pred CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeee----------ceeeeeeec
Confidence 6799999999666544 444 55555552333333332 2346789999999988776666 777777655
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
++..+..+.+...+. .+++.+ +++++++-. ++.+..++..................+++++|++
T Consensus 87 ~~~~~~~~~~~~~p~--------------~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 151 (260)
T d1rwia_ 87 NNQTVLPFDGLNYPE--------------GLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 151 (260)
T ss_dssp SCCEECCCCSCCSEE--------------EEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTC
T ss_pred cceeeeeeeeeeecc--------------cccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCC
Confidence 555444433322222 588899 998777665 6677777665432211111223346789999999
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
+.+++ .....+|..++.............-.....+++.++|..+++....+ .++.+...+.
T Consensus 152 ~~~v~-------~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~-----------~i~~~~~~~~ 213 (260)
T d1rwia_ 152 NVYVT-------DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN-----------QVVKLLAGST 213 (260)
T ss_dssp CEEEE-------EGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTT-----------EEEEECTTCS
T ss_pred CEeee-------ccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCC-----------EEEEEeCCCC
Confidence 87665 33445677777654332221111112234567788887654433322 3555544332
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
....... ..-.....++++++|+.+++-..+. .|+.++
T Consensus 214 ~~~~~~~-~~~~~P~~i~~d~~g~l~vad~~~~---rI~~i~ 251 (260)
T d1rwia_ 214 TSTVLPF-TGLNTPLAVAVDSDRTVYVADRGND---RVVKLT 251 (260)
T ss_dssp CCEECCC-CSCCCEEEEEECTTCCEEEEEGGGT---EEEEEC
T ss_pred eEEEEcc-CCCCCeEEEEEeCCCCEEEEECCCC---EEEEEe
Confidence 2211111 1224567899999987655534433 555444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.76 E-value=1.3e-06 Score=85.17 Aligned_cols=226 Identities=10% Similarity=0.025 Sum_probs=130.9
Q ss_pred cceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 216 ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
+..++++|||+++++...++ |..|+..+. .....-....+.+++|+|||+.+++.... +.+.+|+...
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~----------~~~~~~~~~~ 98 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNA----------DSIPVVSLVK 98 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECT----------TSCEEEEEEC
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcceEEEcCCCCeEEEecCC----------ceEEEEEecc
Confidence 45689999999999888777 777887632 22222223349999999999988887666 5677777543
Q ss_pred C--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc----------ccccc
Q 005140 295 G--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK----------SLKVE 361 (712)
Q Consensus 295 g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~----------~~~~~ 361 (712)
. ............. ...+.+.+ +++++++.. ++.+..++..++...... .....
T Consensus 99 ~~~~~~~~~~~~~~~~------------~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (302)
T d2p4oa1 99 SDGTVETLLTLPDAIF------------LNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 165 (302)
T ss_dssp TTSCEEEEEECTTCSC------------EEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred cccceeeccccCCccc------------cceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccc
Confidence 2 2211111111110 11578889 999888776 788888887754321100 01112
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee--eeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
....+.++. ..+.+. .....+|+.++............ .....-.+++.++|...++...++
T Consensus 166 ~~ngi~~~~--~~l~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~-------- 229 (302)
T d2p4oa1 166 AANGLKRFG--NFLYVS------NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN-------- 229 (302)
T ss_dssp SEEEEEEET--TEEEEE------ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC--------
T ss_pred ccccccccC--Cceeee------cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCC--------
Confidence 345566653 444431 33456778887665433222221 112233578899998655443433
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEE---eeCCCEEEEEEcC
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAW---EPKGHRFAVIHGD 484 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~---sp~g~~l~~~~~d 484 (712)
.++.+...+...........-...++++| +||++.|++++..
T Consensus 230 ---~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 230 ---SVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ---CEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ---cEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 35556544433333333333456789999 6788888877654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.63 E-value=1.6e-05 Score=77.49 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=51.1
Q ss_pred ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 465 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
....+++.++|+.+++....+ .|.+|+.+.+... .....+....++++|.|+++.|++.... +|.|..+++
T Consensus 227 ~pdGiavD~~GnlyVa~~~~g---~I~~~dp~~g~~~----~~i~~p~~~~t~~afg~d~~~lyVt~~~--~g~i~~~~~ 297 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANWGSS---HIEVFGPDGGQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEW 297 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTT---EEEEECTTCBSCS----EEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEEC
T ss_pred cceeeEEecCCcEEEEEcCCC---EEEEEeCCCCEEE----EEEECCCCCEEEEEEeCCCCEEEEEECC--CCcEEEEEC
Confidence 345789999999887777766 8999987654421 2233444567899999999866555431 688888887
Q ss_pred C
Q 005140 545 D 545 (712)
Q Consensus 545 ~ 545 (712)
.
T Consensus 298 ~ 298 (314)
T d1pjxa_ 298 Q 298 (314)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.52 E-value=1.2e-05 Score=76.05 Aligned_cols=233 Identities=9% Similarity=-0.000 Sum_probs=124.1
Q ss_pred eeEEEecCCCCEEEEEc-CCCCCCCcCCCccEEEEEEccCCc-eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 256 VKLIDFSPGEKYLVTYS-SHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s-~d~~~~~~~~~~~~I~iwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
...|+++++|+..++.. .. +.|..++..... ....+.+...+. .+++++ +|.+
T Consensus 16 P~~vavd~dG~i~v~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~p~--------------gvav~~-~g~i 70 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMY----------GRVVKLATGSTGTTVLPFNGLYQPQ--------------GLAVDG-AGTV 70 (260)
T ss_dssp EEEEEECTTCCEEEEECSSS----------CEEEEEC----CEEECCCCSCCSCC--------------CEEECT-TCCE
T ss_pred CCEEEEcCCCCEEEEEcCCC----------CEEEEEcCCCceEEEeccCCccCce--------------EEEEcC-CCCE
Confidence 68999999999665543 33 566666543222 222222221111 488999 9998
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
+++.. .+.+.+++..+...+... .......++++.+++++++. .....++..+..................
T Consensus 71 ~v~d~~~~~i~~~~~~~~~~~~~~-~~~~~p~~iavd~~g~i~v~-------d~~~~~~~~~~~~~~~~~~~~~~~~~~p 142 (260)
T d1rwia_ 71 YVTDFNNRVVTLAAGSNNQTVLPF-DGLNYPEGLAVDTQGAVYVA-------DRGNNRVVKLAAGSKTQTVLPFTGLNDP 142 (260)
T ss_dssp EEEETTTEEEEECTTCSCCEECCC-CSCCSEEEEEECTTCCEEEE-------EGGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred EEeeeeeceeeeeeeccceeeeee-eeeeecccccccccceeEee-------ccccccccccccccceeeeeeecccCCc
Confidence 87776 555665554444333211 12345788999999987665 2233355555544332111110011122
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
..+..+++|..+++..... .++.+...+........ ..-.....+++.++|+.+++....+ .|..
T Consensus 143 ~~i~~~~~g~~~v~~~~~~-----------~i~~~d~~~~~~~~~~~-~~~~~p~gi~~d~~g~l~vsd~~~~---~i~~ 207 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNN-----------RVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTN---QVVK 207 (260)
T ss_dssp CEEEECTTCCEEEEEGGGT-----------EEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTT---EEEE
T ss_pred ceeeecCCCCEeeeccccc-----------cccccccccceeeeeec-cccCCCccceeeeeeeeeeeecCCC---EEEE
Confidence 3456788888554433222 34444443332221111 2345578899999998766655555 6777
Q ss_pred EEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 493 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++...... .+.... -.....++++++|..+++-.. ++.|..++.
T Consensus 208 ~~~~~~~~-----~~~~~~~~~~P~~i~~d~~g~l~vad~~---~~rI~~i~~ 252 (260)
T d1rwia_ 208 LLAGSTTS-----TVLPFTGLNTPLAVAVDSDRTVYVADRG---NDRVVKLTS 252 (260)
T ss_dssp ECTTCSCC-----EECCCCSCCCEEEEEECTTCCEEEEEGG---GTEEEEECC
T ss_pred EeCCCCeE-----EEEccCCCCCeEEEEEeCCCCEEEEECC---CCEEEEEeC
Confidence 76543221 111111 124578999999986665444 566665543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.51 E-value=4.2e-05 Score=73.08 Aligned_cols=232 Identities=13% Similarity=0.144 Sum_probs=133.9
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--------CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccE
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--------QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--------~v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~ 286 (712)
..|+++|+|+++++-..+. |++|+.++ ..+..+... ....+++.++ +.++++.... ++.
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---------~~~ 94 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP---------THQ 94 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG---------GCE
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCCC--CEEEEecccCCCcccccccccccccccccccceeccCC---------ccc
Confidence 5799999999777755444 88999773 333334211 1445666555 4444443332 157
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc--cccccCe
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK--SLKVENV 363 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~--~~~~~~v 363 (712)
|.+++. .|...+.+....... -..++..+ +|.++++.. .+.+.+++.. ++.+... ..+....
T Consensus 95 i~~~~~-~g~~~~~~~~~~~~~------------p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 95 IQIYNQ-YGQFVRKFGATILQH------------PRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 159 (279)
T ss_dssp EEEECT-TSCEEEEECTTTCSC------------EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred cccccc-cccceeecCCCcccc------------cceecccc-CCcEEEEeeccceeeEeccC-Cceeeccccccccccc
Confidence 778874 777777664332211 00467778 888777666 6777777754 3333221 1233446
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
..+++.++++.+++ ......|+. |+++|+++.....
T Consensus 160 ~~i~~d~~g~i~v~-------d~~~~~V~~-----------------------~d~~G~~~~~~g~-------------- 195 (279)
T d1q7fa_ 160 NGVVVNDKQEIFIS-------DNRAHCVKV-----------------------FNYEGQYLRQIGG-------------- 195 (279)
T ss_dssp EEEEECSSSEEEEE-------EGGGTEEEE-----------------------EETTCCEEEEESC--------------
T ss_pred ceeeeccceeEEee-------eccccceee-----------------------eecCCceeeeecc--------------
Confidence 67777777765554 122223332 3455554432211
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----CCceeEEE
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANALF 519 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~l~ 519 (712)
.++......+++.|+|+.+++-...+ ..|.+|+.. +. .+.++. ......++
T Consensus 196 ----------------~g~~~~P~giavD~~G~i~Vad~~~~--~~v~~f~~~-G~------~~~~~~~~~~~~~p~~va 250 (279)
T d1q7fa_ 196 ----------------EGITNYPIGVGINSNGEILIADNHNN--FNLTIFTQD-GQ------LISALESKVKHAQCFDVA 250 (279)
T ss_dssp ----------------TTTSCSEEEEEECTTCCEEEEECSSS--CEEEEECTT-SC------EEEEEEESSCCSCEEEEE
T ss_pred ----------------cccccCCcccccccCCeEEEEECCCC--cEEEEECCC-CC------EEEEEeCCCCCCCEeEEE
Confidence 12234567889999998666543322 168888853 22 333332 23468899
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
+.|+|.+++ +.. +..|++|.....
T Consensus 251 v~~dG~l~V-~~~---n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 251 LMDDGSVVL-ASK---DYRLYIYRYVQL 274 (279)
T ss_dssp EETTTEEEE-EET---TTEEEEEECSCC
T ss_pred EeCCCcEEE-EeC---CCeEEEEEeeee
Confidence 999997554 555 789999988754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.48 E-value=0.00015 Score=70.45 Aligned_cols=250 Identities=9% Similarity=0.036 Sum_probs=142.4
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.++|.+ +|+++++-. .+.|..|+..+................++++|+|+++++.. +.......+..++......
T Consensus 44 G~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~---~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 44 GLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL---GDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp EEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC---TTSSSCCEEEEECTTSCSC
T ss_pred eCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEec---CCCccceeEEEEcCCCcee
Confidence 478999 998655554 88898888776543322222334578999999998777621 1122345566666554432
Q ss_pred eeeeee--eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 402 LRQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 402 ~~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
...... .......+.+.++|.+.++...... ....-.+|.+...+.....+.- .-...+.++|+|+++.|+
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~-----~~~~g~v~~~~~dg~~~~~~~~--~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-----TNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLW 192 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-----TBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEE
T ss_pred eeeccCCCcccCCcceeEEeccceeeccccccc-----ccCcceeEEEecccceeEEEee--ccceeeeeeeccccceEE
Confidence 221110 0111224567999985554322111 1112356777655443332211 123457799999999887
Q ss_pred EEEcCCCCCeEEEEEeecccccCce---eEEEEeCCC-ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec--
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRV---SKLTTLKGK-QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA-- 553 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~---~~~~~~~~~-~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-- 553 (712)
++.... ..|..|++......... ......... ....+++.++|++.++... .+.|.+||.+ ++.+...
T Consensus 193 vad~~~--~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~---~g~V~~~~p~-G~~l~~i~~ 266 (319)
T d2dg1a1 193 VTETTA--NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---QGRVLVFNKR-GYPIGQILI 266 (319)
T ss_dssp EEEGGG--TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET---TTEEEEECTT-SCEEEEEEC
T ss_pred EecccC--CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC---CCEEEEECCC-CcEEEEEeC
Confidence 776532 28999988643211000 011112222 3467999999997776665 7999999965 6665542
Q ss_pred ------cccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 554 ------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 554 ------~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+...+++++|.|++..+++.+.+ ....+.-.||.+.
T Consensus 267 P~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~g~l~~~~ 308 (319)
T d2dg1a1 267 PGRDEGHMLRSTHPQFIPGTNQLIICSND-IEMGGGSMLYTVN 308 (319)
T ss_dssp TTGGGTCSCBCCEEEECTTSCEEEEEEEC-GGGTCCEEEEEEE
T ss_pred CCcCCCcCceeeeEEEeCCCCEEEEEcCC-CCcCCceeEEEEe
Confidence 22357899999988776666542 0113344455443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.38 E-value=0.00018 Score=70.01 Aligned_cols=231 Identities=7% Similarity=0.054 Sum_probs=129.8
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-c-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
..++|.++|++.++-...+ |..|+.. +......+ . ......++|+|||+.+++...+.. ..+.|...+..
T Consensus 43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~-g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~------~~~~i~~~~~~ 115 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK------STGGIFAATEN 115 (319)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSS------SCCEEEEECTT
T ss_pred EeCEECCCCCEEEEECCCCEEEEEECC-CCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCc------cceeEEEEcCC
Confidence 4689999999666555555 7778877 43333322 2 234889999999997776544310 11445555654
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecC-------CeEEEEEcCCceecccccccccCeeeE
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK-------NMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d-------~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
++............. ....+.+.+ +|.+.++... +.+..++... ..+..........+.+
T Consensus 116 ~~~~~~~~~~~~~~~-----------~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGi 182 (319)
T d2dg1a1 116 GDNLQDIIEDLSTAY-----------CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGI 182 (319)
T ss_dssp SCSCEEEECSSSSCC-----------CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEE
T ss_pred CceeeeeccCCCccc-----------CCcceeEEe-ccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeee
Confidence 444333222211110 011478899 9987776431 2344444332 2222222233446789
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-cee---eeeeee----ecceeEEECcCCCEEEEEEcccccccccc
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELR---QKNLFS----VSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~---~~~~~~----~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
+|+|+++.|.+. .....+|+.|++.... ... ...... ...-.+++..+|+..++....+
T Consensus 183 a~s~dg~~lyva------d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g------- 249 (319)
T d2dg1a1 183 ALSTDEKVLWVT------ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG------- 249 (319)
T ss_dssp EECTTSSEEEEE------EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT-------
T ss_pred eeccccceEEEe------cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC-------
Confidence 999999877652 2334577777764321 111 110000 1123467788888555544433
Q ss_pred cccEEEEEEecCCcceeEEEecC----CCCceEEEEEeeCCCEEEEEEcC
Q 005140 439 YTGFELFRIKERDIPIEVLELDN----KNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~----h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
.++.++..+..+..+.++. +...+++++|.|++..+++...+
T Consensus 250 ----~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 250 ----RVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp ----EEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ----EEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 4566666666666677653 34467899999988877776653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.21 E-value=0.00034 Score=68.13 Aligned_cols=303 Identities=9% Similarity=0.043 Sum_probs=163.3
Q ss_pred cEEEEEEccCCceeeeccCCCcccccC--C----------------------CCC---cCC-CCcCeEEecCC--CCCEE
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVG--G----------------------TGG---VAG-VSWPVFRWGGG--KDKYF 334 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~--~----------------------~~~---~~~-~~~~~~~~s~~--dg~~l 334 (712)
|.|+|+-+.+++.++.+..-.....+| . .++ ..| ...|.+++..+ ||+|+
T Consensus 23 G~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdGtyDGryl 102 (459)
T d1fwxa2 23 GEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFL 102 (459)
T ss_dssp CEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETTEEEEEEE
T ss_pred ceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCCccceeEE
Confidence 899999999999887764322111100 0 000 112 34556666533 78888
Q ss_pred EEec--CCeEEEEEcCCceecccccc-cccCeeeEEECCCC--CeEEEEeecCC--CCC---------CCeEEEEEecCC
Q 005140 335 AKLG--KNMISVYETESFTLIDKKSL-KVENVMDFSWSPTD--PIISLFVPELG--GGN---------QPARVSLVQIPS 398 (712)
Q Consensus 335 a~~~--d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~--~~la~~~~~~~--~~~---------~~~~i~~~~~~~ 398 (712)
.... ++.|.+.|+.+++......+ ...++..+...+++ .+++....... ..+ -...++.++..+
T Consensus 103 FVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~t 182 (459)
T d1fwxa2 103 FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK 182 (459)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTT
T ss_pred EEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCC
Confidence 8777 89999999998886543333 23356777766554 44443211000 001 113456677776
Q ss_pred ccceeeeeeeeecceeEEECcCCCEEEEEEcccccc-----------------------------cccccccEEEEEEec
Q 005140 399 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT-----------------------------KKSTYTGFELFRIKE 449 (712)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~-----------------------------~~~~~~~~~l~~l~~ 449 (712)
.+...+..+. .....+.++++|+++++.+.+.... .....+++.+.+...
T Consensus 183 m~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~ 261 (459)
T d1fwxa2 183 WEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 261 (459)
T ss_dssp TEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred ceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccc
Confidence 6655444432 2334567899999998876432100 001112233333322
Q ss_pred C-C-cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc------cCceeEEEEeC-CCceeEEEE
Q 005140 450 R-D-IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH------AGRVSKLTTLK-GKQANALFW 520 (712)
Q Consensus 450 ~-~-~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~------~~~~~~~~~~~-~~~v~~l~~ 520 (712)
. + .....+.. ....+.+..+|||+++++++.-. +++.++|++.-.. ..+-....... +-.-...+|
T Consensus 262 ~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs--~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f 336 (459)
T d1fwxa2 262 EASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLS--PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF 336 (459)
T ss_dssp G--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTS--SBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred cCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcC--CcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence 1 1 11112333 23456789999999999988743 3899999964211 00111122211 223355678
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcc----------eeeeec-cccceee------EEECCCCCEEEEEEcc---c---
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDEL----------ETMATA-EHFMATD------VEWDPTGRYVATAVTS---V--- 577 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~----------~~~~~~-~~~~v~~------~~~spdg~~l~t~s~~---~--- 577 (712)
..+|.-..+.-. |.+|.-|++... .++... -+..+-. -.-+|||+||++...- +
T Consensus 337 d~~g~aytslfi---ds~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~ 413 (459)
T d1fwxa2 337 DGRGNAYTSLFL---DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 413 (459)
T ss_dssp CTTSEEEEEETT---TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred CCCceEEEEeec---cceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccccccccC
Confidence 888743333334 899999998632 222221 1111111 2457999999998742 1
Q ss_pred ---eeccccEEEEEecCceeeee
Q 005140 578 ---HEMENGFNIWSFNGKLLYRT 597 (712)
Q Consensus 578 ---~~~d~~v~iw~~~g~~~~~~ 597 (712)
+. ...-++.|++|..+.-.
T Consensus 414 vgpl~-pe~~qlidisg~~m~l~ 435 (459)
T d1fwxa2 414 VGPLK-PENDQLIDISGDKMVLV 435 (459)
T ss_dssp CCSSC-CEEEEEEECSSSSCEEE
T ss_pred CCCCC-CccceEEEcCCCeeEEE
Confidence 11 22467899998765433
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.15 E-value=0.00068 Score=68.82 Aligned_cols=260 Identities=12% Similarity=0.081 Sum_probs=138.0
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+..+++||||++||.+-.. .+.....|+++|+.+|+.+...-.... ...+.|++ |++.|.
T Consensus 127 ~~~~~~Spd~~~la~s~d~-----~G~e~~~l~v~Dl~tg~~~~~~i~~~~--------------~~~~~W~~-D~~~~~ 186 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSA-----SGSDWVTIKFMKVDGAKELPDVLERVK--------------FSCMAWTH-DGKGMF 186 (430)
T ss_dssp EEEEEECTTSSEEEEEEEE-----TTCSCEEEEEEETTTTEEEEEEEEEEC--------------SCCEEECT-TSSEEE
T ss_pred ecceEecCCCCEEEEEecc-----ccCchheeEEeccCcceeccccccccc--------------ccceEEcC-CCCEEE
Confidence 4567889999999865433 112226899999999987642211111 11589999 999776
Q ss_pred Eec-C----------------CeEEEEEcCCceecccccccc----cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 336 KLG-K----------------NMISVYETESFTLIDKKSLKV----ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 336 ~~~-d----------------~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
... + ..+..+.+.+...-....... ..+..+..+++++++++.+... ......++..
T Consensus 187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~~~~~ 264 (430)
T d1qfma1 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYC 264 (430)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEE
T ss_pred EEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeecc--CCccEEEEEe
Confidence 543 1 246667666543222221211 1255677899999988654433 4556678887
Q ss_pred ecCCccc-e----eeeeeeeecceeE-EECcCCCEEEEEEcccccccccccccEEEEEEecCC--cceeEEEecCCCCce
Q 005140 395 QIPSKEE-L----RQKNLFSVSDCKM-YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD--IPIEVLELDNKNDKI 466 (712)
Q Consensus 395 ~~~~~~~-~----~~~~~~~~~~~~~-~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~l~~h~~~v 466 (712)
+...... + ....+........ .....|..+.+.++.... +..|..+.... ...-..-++.+...+
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~-------~~~L~~~~~~~~~~~~w~~vi~~~~~~~ 337 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-------NYRLINIDFTDPEESKWKVLVPEHEKDV 337 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCT-------TCEEEEEETTBCCGGGCEEEECCCSSCE
T ss_pred eCCCcccccccccceeEeecccccceEEEecCCceeecccCcccc-------cceeEEecCCCCccccceEEecccCcce
Confidence 7654321 1 0111111111111 122344455554443321 12444444321 111112233445556
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEec-cCCCceEEEEECC
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVD 545 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~-~~~dg~v~iwd~~ 545 (712)
..-.++..+.+|++...++....|.++++.++.. ..+.......+..+..+++...+...-. -..-.+++-||+.
T Consensus 338 ~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~----~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~ 413 (430)
T d1qfma1 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL----LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (430)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE----EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred eeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcE----EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence 5555566677887776555455789999865432 2332223334555555566655444321 1136789999998
Q ss_pred cce
Q 005140 546 ELE 548 (712)
Q Consensus 546 ~~~ 548 (712)
+++
T Consensus 414 t~~ 416 (430)
T d1qfma1 414 KEE 416 (430)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.10 E-value=0.0017 Score=61.94 Aligned_cols=229 Identities=13% Similarity=0.095 Sum_probs=130.4
Q ss_pred eEEEcCCCcEEEEEecC-c-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 218 FVQWSPLGTYLATVHRQ-G-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~-~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
+..|.+....|....-. + |..|+.. +... ..+..+ .+.++++.++|.+++++ .+ .|.++|..+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~-~g~~-~~~~~~~~~~~i~~~~dg~l~va~-~~-----------gl~~~d~~t 87 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLA-SGRK-TVHALPFMGSALAKISDSKQLIAS-DD-----------GLFLRDTAT 87 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETT-TTEE-EEEECSSCEEEEEEEETTEEEEEE-TT-----------EEEEEETTT
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECC-CCeE-EEEECCCCcEEEEEecCCCEEEEE-eC-----------ccEEeeccc
Confidence 46788866666666533 3 7788887 4432 333333 48899999999877764 34 488999988
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-----CCeEEEEEcCCceecccccccccCeeeEEEC
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----KNMISVYETESFTLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 369 (712)
++........... .......+.+.| +|.+.++.. .+.-.+|.+..++... ........+.++|+
T Consensus 88 g~~~~l~~~~~~~---------~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~-~~~~~~~~Ng~~~s 156 (295)
T d2ghsa1 88 GVLTLHAELESDL---------PGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTK-LFADISIPNSICFS 156 (295)
T ss_dssp CCEEEEECSSTTC---------TTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEE-EEEEESSEEEEEEC
T ss_pred ceeeEEeeeecCC---------CcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEE-EeeccCCcceeeec
Confidence 8754332211110 001122577888 898766553 2345666666554332 11223345788899
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
|+++.+.+. .....+|+.+++........ +.. .++
T Consensus 157 ~d~~~l~~~------dt~~~~I~~~~~d~~~~~~~----------------~~~-------------------~~~---- 191 (295)
T d2ghsa1 157 PDGTTGYFV------DTKVNRLMRVPLDARTGLPT----------------GKA-------------------EVF---- 191 (295)
T ss_dssp TTSCEEEEE------ETTTCEEEEEEBCTTTCCBS----------------SCC-------------------EEE----
T ss_pred CCCceEEEe------ecccceeeEeeecccccccc----------------cce-------------------EEE----
Confidence 998876652 23344566665422110000 000 000
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc-cCCCeEE
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS-PSGRFIV 528 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~l~ 528 (712)
..+.+..+....+++..+|+..++....+ .|..|+.+ +. ......++...+++++|- ||.+.|+
T Consensus 192 -------~~~~~~~g~pdG~~vD~~GnlWva~~~~g---~V~~~dp~-G~----~~~~i~lP~~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 192 -------IDSTGIKGGMDGSVCDAEGHIWNARWGEG---AVDRYDTD-GN----HIARYEVPGKQTTCPAFIGPDASRLL 256 (295)
T ss_dssp -------EECTTSSSEEEEEEECTTSCEEEEEETTT---EEEEECTT-CC----EEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred -------eccCcccccccceEEcCCCCEEeeeeCCC---ceEEecCC-Cc----EeeEecCCCCceEEEEEeCCCCCEEE
Confidence 11112244566788888998887777766 79999863 22 112334445568889995 6777776
Q ss_pred EEe
Q 005140 529 LAG 531 (712)
Q Consensus 529 ~~~ 531 (712)
+.+
T Consensus 257 vTt 259 (295)
T d2ghsa1 257 VTS 259 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.93 E-value=0.00088 Score=63.99 Aligned_cols=218 Identities=10% Similarity=-0.022 Sum_probs=123.8
Q ss_pred CCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeee--ecC--C
Q 005140 179 EKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR--YAH--P 254 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~--~~~--~ 254 (712)
++....|.+-...+.+.-|+.. .+. ...+. ....+.++++.++|.++++ +.+++.++|.. +++.... ... +
T Consensus 27 ~~~~~l~wvDi~~~~I~r~d~~-~g~-~~~~~-~~~~~~~i~~~~dg~l~va-~~~gl~~~d~~-tg~~~~l~~~~~~~~ 101 (295)
T d2ghsa1 27 PASGTAWWFNILERELHELHLA-SGR-KTVHA-LPFMGSALAKISDSKQLIA-SDDGLFLRDTA-TGVLTLHAELESDLP 101 (295)
T ss_dssp TTTTEEEEEEGGGTEEEEEETT-TTE-EEEEE-CSSCEEEEEEEETTEEEEE-ETTEEEEEETT-TCCEEEEECSSTTCT
T ss_pred CCCCEEEEEECCCCEEEEEECC-CCe-EEEEE-CCCCcEEEEEecCCCEEEE-EeCccEEeecc-cceeeEEeeeecCCC
Confidence 3333344444444555555542 221 12221 1235678999999988776 46789999988 5543322 211 1
Q ss_pred --CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 255 --QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 255 --~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
.+..+.+.|+|++.++....... . +.-.+|.+..|+....+....... .+.|++ +++
T Consensus 102 ~~~~nd~~vd~~G~iw~~~~~~~~~----~--~~g~l~~~~~g~~~~~~~~~~~~N--------------g~~~s~-d~~ 160 (295)
T d2ghsa1 102 GNRSNDGRMHPSGALWIGTMGRKAE----T--GAGSIYHVAKGKVTKLFADISIPN--------------SICFSP-DGT 160 (295)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTCC----T--TCEEEEEEETTEEEEEEEEESSEE--------------EEEECT-TSC
T ss_pred cccceeeEECCCCCEEEEecccccc----c--cceeEeeecCCcEEEEeeccCCcc--------------eeeecC-CCc
Confidence 27899999999977765433111 1 233466666776544443322222 589999 998
Q ss_pred EEEEec--CCeEEEEEcCCc--eeccccc--c----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 333 YFAKLG--KNMISVYETESF--TLIDKKS--L----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 333 ~la~~~--d~~i~iwd~~~~--~~~~~~~--~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
.+.... .+.|..|++... ....... . .......+++.++|++.+. .-...+|..|+ +..+.+
T Consensus 161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva-------~~~~g~V~~~d-p~G~~~ 232 (295)
T d2ghsa1 161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA-------RWGEGAVDRYD-TDGNHI 232 (295)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE-------EETTTEEEEEC-TTCCEE
T ss_pred eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee-------eeCCCceEEec-CCCcEe
Confidence 665554 788988887521 1111111 1 1223678888888886654 12234677888 456655
Q ss_pred eeeeeeeecceeEEE-CcCCCEEEEEEcc
Q 005140 403 RQKNLFSVSDCKMYW-QSSGDYLAVKVDR 430 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~-s~~g~~l~~~~~~ 430 (712)
....+......+++| -++.+.|++.+..
T Consensus 233 ~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 233 ARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred eEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 555543333445566 4777777766543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.64 E-value=0.023 Score=57.05 Aligned_cols=258 Identities=10% Similarity=0.033 Sum_probs=133.5
Q ss_pred eEEecCCCCCEEEEec--C----CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCC---------CCCC
Q 005140 323 VFRWGGGKDKYFAKLG--K----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELG---------GGNQ 387 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~---------~~~~ 387 (712)
.+++|| |++++|.+- + -.|+++|+.+++.+... +.......++|++|+..|.+...... ....
T Consensus 129 ~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~ 206 (430)
T d1qfma1 129 GYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (430)
T ss_dssp EEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred ceEecC-CCCEEEEEeccccCchheeEEeccCcceecccc-cccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence 467899 999988654 3 36999999999876532 22222367899999998876532210 1233
Q ss_pred CeEEEEEecCCccceeeeee----eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc------eeEE
Q 005140 388 PARVSLVQIPSKEELRQKNL----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP------IEVL 457 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~ 457 (712)
..+++.+.+.+...-...-+ .....+.+..+++|+++++....++ .+...+|.+...... ....
T Consensus 207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC------DPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS------SSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccC------CccEEEEEeeCCCccccccccccee
Confidence 45788887766432111110 1111233456889999887665433 122456665532111 0011
Q ss_pred EecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCC
Q 005140 458 ELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFN 536 (712)
Q Consensus 458 ~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~d 536 (712)
.+...........- .+|..|.+.++ +.+...|...++..... ..+..+..-....+..-.++..+.+|++....+.-
T Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~-~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~ 358 (430)
T d1qfma1 281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (430)
T ss_dssp EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCcc-ccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence 11111122222222 24444544444 44333566666654321 12222221112234434455556677766543335
Q ss_pred ceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 537 GQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 537 g~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+.|.++++.+++.... ...+.+..+..+++...+....++ .....++.-+|+..
T Consensus 359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss-~~tP~~~y~~Dl~t 414 (430)
T d1qfma1 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS-FLSPGIIYHCDLTK 414 (430)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC-SSCCCEEEEEETTS
T ss_pred eEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcC-CCCCCeEEEEECCC
Confidence 6789999987665443 233556666666666654443332 11146777777763
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.58 E-value=0.028 Score=51.54 Aligned_cols=229 Identities=11% Similarity=0.142 Sum_probs=128.7
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
+.|.|+. ......+.+. ...+.-.+|..+.||--+. .++.|||+++.+.++.+..+...+
T Consensus 47 VvIidl~-n~~~~~Rrpi-~AdsAIMhP~~~IiALrag-----------~~LQiFnletK~klks~~~~e~Vv------- 106 (327)
T d1utca2 47 VVIIDMN-DPSNPIRRPI-SADSAIMNPASKVIALKAG-----------KTLQIFNIEMKSKMKAHTMTDDVT------- 106 (327)
T ss_dssp EEEEETT-STTSCEEEEC-CCSEEEECSSSSEEEEEET-----------TEEEEEETTTTEEEEEEECSSCCC-------
T ss_pred EEEEECC-CCCcceeccc-chhhhhcCCCCcEEEEecC-----------CeEEEEehhHhhhhceEEcCCCcE-------
Confidence 7788987 4443333332 2345567899888887664 489999999999999998877655
Q ss_pred cCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc------cccccCeeeEEECCCCCeEEEEeecCCCCCCCe
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 389 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 389 (712)
.-+|- +.+.|+...+..|.-|+++... ...+ .+....|-....+++.+++++.
T Consensus 107 -------fWkWi--s~~~L~lVT~taVYHW~~~g~s-~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~----------- 165 (327)
T d1utca2 107 -------FWKWI--SLNTVALVTDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT----------- 165 (327)
T ss_dssp -------EEEES--SSSEEEEECSSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECTTSCEEEEE-----------
T ss_pred -------EEEec--CCCEEEEEcCCceEEEcccCCC-CchhhhhhcccccCceEEEEEECCCCCEEEEE-----------
Confidence 46786 4578888889999999986322 1111 0111123444445555544431
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 469 (712)
.-... .....+.++||....+. ...+.+|.+....+
T Consensus 166 --------------------------------------GI~~~--~~~i~G~mQLYS~er~~----sQ~ieGhaa~F~~~ 201 (327)
T d1utca2 166 --------------------------------------GISAQ--QNRVVGAMQLYSVDRKV----SQPIEGHAASFAQF 201 (327)
T ss_dssp --------------------------------------EEEEE--TTEEEEEEEEEETTTTE----EEEECCSEEEEEEE
T ss_pred --------------------------------------eEecC--CCceeEEEEEEEeccCc----CccccceeeeeEEE
Confidence 11000 00122335666554321 12343343322222
Q ss_pred EEee---CCCEEEEEEcCCCCCeEEEEEeeccc-ccCce-eEEEEe--CC----CceeEEEEccCCCeEEEEeccCCCce
Q 005140 470 AWEP---KGHRFAVIHGDSPRPDISFYSMRTAQ-HAGRV-SKLTTL--KG----KQANALFWSPSGRFIVLAGLKGFNGQ 538 (712)
Q Consensus 470 ~~sp---~g~~l~~~~~d~~~~~v~i~d~~~~~-~~~~~-~~~~~~--~~----~~v~~l~~spdg~~l~~~~~~~~dg~ 538 (712)
...- ..+.|+.+........++|.++.... +...+ +....+ +. .-.-++..|+.-..++..+. -|.
T Consensus 202 ~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---~G~ 278 (327)
T d1utca2 202 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---YGY 278 (327)
T ss_dssp CCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET---TSE
T ss_pred EcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec---CcE
Confidence 2211 11244444432222378898886532 11111 122222 11 12356788888888888887 899
Q ss_pred EEEEECCcceeeee
Q 005140 539 LEFYNVDELETMAT 552 (712)
Q Consensus 539 v~iwd~~~~~~~~~ 552 (712)
|++||+.++.++..
T Consensus 279 i~lyDleTgt~i~~ 292 (327)
T d1utca2 279 IHLYDLETGTCIYM 292 (327)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEEEcccccEEEE
Confidence 99999999988764
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.16 E-value=0.046 Score=52.91 Aligned_cols=194 Identities=11% Similarity=0.108 Sum_probs=108.4
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc---------------------------------------
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD--------------------------------------- 412 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 412 (712)
+.+.++ .|++.++.+.++-+|+.+.+.....|....
T Consensus 11 Deyy~f-----~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~ 85 (459)
T d1fwxa2 11 DDYYGF-----WSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDL 85 (459)
T ss_dssp CSEEEE-----ECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCB
T ss_pred ccEEEE-----eeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCc
Confidence 456666 557778888889999887766554432211
Q ss_pred --eeEEEC---cCCCEEEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceEEEEEee--CCCEEEEEEcC
Q 005140 413 --CKMYWQ---SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAWEP--KGHRFAVIHGD 484 (712)
Q Consensus 413 --~~~~~s---~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp--~g~~l~~~~~d 484 (712)
-.+.+. +||++|++...... ++-.++........ +++ .....++.+...+ +..|++..+..
T Consensus 86 HHP~~S~TdGtyDGrylFVNDkan~----------RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~ 154 (459)
T d1fwxa2 86 HHVHMSFTEGKYDGRFLFMNDKANT----------RVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGED 154 (459)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTT----------EEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred CCCcccccCCccceeEEEEEcCCCc----------eEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCcc
Confidence 011111 25666666554443 55555554433322 334 3345567666654 45566665553
Q ss_pred C-------C--------CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCC------------c
Q 005140 485 S-------P--------RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFN------------G 537 (712)
Q Consensus 485 ~-------~--------~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~d------------g 537 (712)
. . ...+.++|..+... ...-.+ +.....+.++|+|+++++.+..+.. .
T Consensus 155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V----~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D 229 (459)
T d1fwxa2 155 ETPLVNDGTNMEDVANYVNVFTAVDADKWEV----AWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 229 (459)
T ss_dssp CEESSCSSSSTTCGG-EEEEEEEEETTTTEE----EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred ccccCCCCccccchhhcceEEEEEecCCceE----EEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccce
Confidence 2 0 01245566544332 111112 3346789999999999998753211 1
Q ss_pred eEEEEECCc--------------c------------eeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 538 QLEFYNVDE--------------L------------ETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 538 ~v~iwd~~~--------------~------------~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.+.+++... + ..+.. .-......+..||||+|+++++.- ++++.|+|+.
T Consensus 230 ~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKL----s~tVSViD~~ 305 (459)
T d1fwxa2 230 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL----SPTVTVLDVT 305 (459)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTT----SSBEEEEEGG
T ss_pred EEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCc----CCcEEEEEeh
Confidence 244454421 0 01111 111334578999999999988874 8999999985
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.92 E-value=0.21 Score=48.49 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=67.9
Q ss_pred EEEcCCCcEEEEEecC------------ceEEeecccCcc--eeeee--cCCC-eeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 219 VQWSPLGTYLATVHRQ------------GAAVWGGANTFN--RLMRY--AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 219 v~~Spdg~~lat~~~~------------~i~iw~~~~~~~--~~~~~--~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
.....+|+.++.|+.. .+.+||.. +.. .+... .+.. ....++.++|++++.|+.+.
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~------ 97 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA------ 97 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST------
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECC-CCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC------
Confidence 3455688888887731 13489987 433 22222 2222 45678899999999887651
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C------CeEEEEEcCCce
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K------NMISVYETESFT 351 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d------~~i~iwd~~~~~ 351 (712)
..+.+||..+..-...-....... ....+..+ ||++++.++ . +.+.+||..+..
T Consensus 98 ---~~~~~yd~~~~~w~~~~~~~~~r~------------~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 98 ---KKTSLYDSSSDSWIPGPDMQVARG------------YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp ---TCEEEEEGGGTEEEECCCCSSCCS------------SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ---cceeEecCccCccccccccccccc------------ccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence 468899988776533211111110 11466677 999888876 1 468899987654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.5 Score=45.33 Aligned_cols=180 Identities=10% Similarity=-0.025 Sum_probs=96.4
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecc----------cCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGA----------NTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~----------~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
.+.+-++.|+...+||.++.++++|-... +......+...+.|..++|+-| .|+.....
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~~~--------- 105 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVSTRN--------- 105 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEESS---------
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEeCC---------
Confidence 34667999998889999999998776532 0111122223456899999755 45554433
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc-----cc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK-----SL 358 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~-----~~ 358 (712)
.+..++..+-.............. .+.|+| . ..++...++.+.++.+..+...... ..
T Consensus 106 --~l~~~~~~~l~~~~~~~~~~~~~~-------------~~~~~p-~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 168 (381)
T d1xipa_ 106 --ALYSLDLEELSEFRTVTSFEKPVF-------------QLKNVN-N-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD 168 (381)
T ss_dssp --EEEEEESSSTTCEEEEEECSSCEE-------------EEEECS-S-EEEEEETTSEEEEEETTTCCEEEEEESEEEEE
T ss_pred --CEEEEEeecccccccccccccccc-------------ceecCC-c-eeEEEecCCCEEEEEeccCccccccCCcceEE
Confidence 566777644322222111111111 466777 3 3444444899999998876432111 01
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
...++.+++|++.|..+++ + ++...-...+++....+............+.|-.+-.++++..
T Consensus 169 ~~~~~~~v~ws~kgkq~v~-----~--~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 169 VTNSQLAVLLKDRSFQSFA-----W--RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp ECSSEEEEEETTSCEEEEE-----E--ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ecCCceEEEEeCCcEEEEE-----e--CCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 1245777888888877765 2 2221111223332222211111122345678887777776654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.16 E-value=0.63 Score=44.85 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=76.5
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCc-CCCccEEEEEEccCCceee--eccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPR-DANRVVINIFDVRTGKVMR--DFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~-~~~~~~I~iwd~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
+...+.......+|+.++.|+........ ......+.+||..++.... ......... .....+.+
T Consensus 18 p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~------------~~~~~~~~ 85 (387)
T d1k3ia3 18 PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF------------CPGISMDG 85 (387)
T ss_dssp SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS------------SCEEEECT
T ss_pred CccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccc------------eeEEEEec
Confidence 33445555666789988888865322211 1122357799998886432 121111111 11467889
Q ss_pred CCCCEEEEec--CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCC----CeEEEEEecCCcc
Q 005140 329 GKDKYFAKLG--KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQ----PARVSLVQIPSKE 400 (712)
Q Consensus 329 ~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~----~~~i~~~~~~~~~ 400 (712)
+|++++.++ ...+.+||..+............ .-...+..++|+.+++ ++... ...++.|+..+..
T Consensus 86 -~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~-----GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 86 -NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-----GGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp -TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE-----CCCCCSSSCCCCEEEEETTTTE
T ss_pred -CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeee-----ccccccccccceeeeecCCCCc
Confidence 999999887 57899999886654322212211 2345677889998887 54332 2346777766543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.52 Score=42.94 Aligned_cols=223 Identities=6% Similarity=-0.088 Sum_probs=115.2
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecc----ccccc
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLID----KKSLK 359 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~----~~~~~ 359 (712)
.|+-.++.+......+......+ .+.|.+ ..+.|.... .+.|.-.++....... .....
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~--------------~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~ 75 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVV--------------ALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEE--------------EEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCCCcceeeeCCCCceE--------------EEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 47788886655433333333222 578887 777666554 6667666654321110 01112
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
...+.++++.+.+..|.+. .....+|..+++..................+..+|...+|........
T Consensus 76 ~~~p~glAvD~~~~~lY~~------d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~------- 142 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWT------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------- 142 (266)
T ss_dssp CSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-------
T ss_pred CCCcceEEEeeccceEEEE------ecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC-------
Confidence 2346678887766666542 222335666665543321111111122334556776666665432211
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA 517 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~ 517 (712)
-.+++....+.....+.. ..-.....+++.+.++.|+.+.... ..|...++..... ..+...... ....
T Consensus 143 --~~I~r~~~dGs~~~~l~~-~~~~~p~gl~iD~~~~~lYw~d~~~--~~I~~~~~dG~~~----~~~~~~~~~~~~p~~ 213 (266)
T d1ijqa1 143 --AKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNR----KTILEDEKRLAHPFS 213 (266)
T ss_dssp --CEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSC----EEEEECTTTTSSEEE
T ss_pred --cceeEeccCCCceecccc-cccceeeEEEeeccccEEEEecCCc--CEEEEEECCCCCE----EEEEeCCCcccccEE
Confidence 256666665554433322 2235678999999998888876532 2788888754321 233333222 2234
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+++ ++.+|+.+... ++.|.-.+..++..
T Consensus 214 lav--~~~~ly~td~~--~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 214 LAV--FEDKVFWTDII--NEAIFSANRLTGSD 241 (266)
T ss_dssp EEE--ETTEEEEEETT--TTEEEEEETTTCCC
T ss_pred EEE--ECCEEEEEECC--CCeEEEEECCCCcc
Confidence 444 45666666532 57777777665543
|
| >d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Synaptojanin 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.011 Score=42.59 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=56.1
Q ss_pred CEEEECCCCCCCchh---hhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 60 NIIVVDNLPVVPKEK---FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~---~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+|+|.=.-...+++ -+.+...|.+.|++||+|.- +++.-|. ..|+|.+-+.|.+|+. ++|.++.+
T Consensus 16 gTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~GeViL--vRFv~d~--------mwVTF~dG~SAL~al~-l~g~~v~G 84 (95)
T d1ufwa_ 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--VRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--EEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred cEEEEEeccCCccccccCCHHHHHHHHHHHhhCCeEEE--EEEeCCe--------EEEEECCcHHHHHHhc-cCCeEEcc
Confidence 377774443333333 24578888899999999988 8887664 8999999999988876 89999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+++++...
T Consensus 85 -~~l~It~~ 92 (95)
T d1ufwa_ 85 -RAVKISGP 92 (95)
T ss_dssp -EEEEEECC
T ss_pred -eEEEEecC
Confidence 48887653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.74 E-value=1.3 Score=45.20 Aligned_cols=50 Identities=14% Similarity=0.275 Sum_probs=34.7
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCC-EEEEEEc
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~-~l~t~s~ 575 (712)
.|..+++++. ||.++-+|.++++.+-.... ....-+.|..||+ ||++.+.
T Consensus 474 agglVf~G~~---dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g 527 (571)
T d2ad6a1 474 KGGLVWYATL---DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG 527 (571)
T ss_dssp TTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCEEEEECC---CCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence 4667777776 99999999999999865322 2222366677887 6655543
|
| >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Limkain-b1, LKAP species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.03 Score=38.16 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=49.7
Q ss_pred hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEE
Q 005140 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVN 143 (712)
Q Consensus 76 ~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~ 143 (712)
.-+.+.|..+|.++|+|.. +.+-.-. .|.. .|-|...+.++|..|+..|+.++++.+ .+.|+
T Consensus 7 kelqq~L~~~f~~h~~V~s--v~l~~~~-dg~~--~A~V~v~~~q~A~~~v~~LhR~KiG~K-RI~Vs 68 (73)
T d2dgxa1 7 KELQQLLQEAFARHGKVKS--VELSPHT-DYQL--KAVVQMENLQDAIGAVNSLHRYKIGSK-KILVS 68 (73)
T ss_dssp HHHHHHHHHHHHHHSCEEE--EEECSCC-STTC--CEEEEESSHHHHHHHHHHHTTEEETTE-EEEEE
T ss_pred HHHHHHHHHHHHhheeEEE--EEEEecc-CCcE--EEEEEcCCHHHHHHHHHHHHHHhcCCe-EEEEE
Confidence 4578889999999999988 6664332 2443 699999999999999999999999987 44444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.59 E-value=0.99 Score=42.66 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=60.1
Q ss_pred CceEEEEEeeCCCEEEEEEcCC------------CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEe
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDS------------PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~ 531 (712)
...+++++..+|.++++-.... ..+...+|..+.+. +..+.. .....+.++++||+++|+++.
T Consensus 150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~----~~~~~~-~l~~pNGI~~s~d~~~lyVa~ 224 (340)
T d1v04a_ 150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND----VRVVAE-GFDFANGINISPDGKYVYIAE 224 (340)
T ss_dssp SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC----EEEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc----eEEEcC-CCCccceeEECCCCCEEEEEe
Confidence 4578899999998777632110 01133444443322 112221 123579999999999988876
Q ss_pred ccCCCceEEEEECCcceeee---ec-cccceeeEEECCC-CCEEEEEE
Q 005140 532 LKGFNGQLEFYNVDELETMA---TA-EHFMATDVEWDPT-GRYVATAV 574 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~---~~-~~~~v~~~~~spd-g~~l~t~s 574 (712)
. ..+.|..|++.....+. .. -.+.+-.+.+++. |.+.+.+.
T Consensus 225 t--~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 225 L--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp G--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred C--CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 5 26889999887433222 11 1244567899874 55444443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.56 E-value=0.82 Score=41.47 Aligned_cols=229 Identities=9% Similarity=-0.035 Sum_probs=118.1
Q ss_pred CcEEEEEecCceEEeecccCc-c-----eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 225 GTYLATVHRQGAAVWGGANTF-N-----RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 225 g~~lat~~~~~i~iw~~~~~~-~-----~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
|++|.++....|.-..+++.. . .....+...+..++|.+..+.|....... +.|+..++..+...
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~---------~~I~~~~l~g~~~~ 71 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE---------PSIGRASLHGGEPT 71 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT---------TEEEEEESSSCCCE
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCC---------CeEEEEEcccCCcE
Confidence 678888888887655554211 1 11112223477899999888877654331 67888887544433
Q ss_pred eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEE
Q 005140 299 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
..+...... +. .+++.. -+..|..+. .+.|.+.++..................+++.|...+|.
T Consensus 72 ~v~~~~~~~--------p~-----~iAvD~-~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly 137 (263)
T d1npea_ 72 TIIRQDLGS--------PE-----GIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY 137 (263)
T ss_dssp EEECTTCCC--------EE-----EEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred EEEEecccc--------cc-----EEEEec-cCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEE
Confidence 333221111 11 344443 334444333 78999998874432111112234578999999887776
Q ss_pred EEeecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
... .+....+|+..++.... .+....+ .....++..+.++.|+....... .+..+...+...
T Consensus 138 ~t~----~~~~~~~I~r~~~dG~~~~~i~~~~~--~~P~glaiD~~~~~lYw~d~~~~----------~I~~~~~~g~~~ 201 (263)
T d1npea_ 138 WTD----WNRDNPKIETSHMDGTNRRILAQDNL--GLPNGLTFDAFSSQLCWVDAGTH----------RAECLNPAQPGR 201 (263)
T ss_dssp EEE----CCSSSCEEEEEETTSCCCEEEECTTC--SCEEEEEEETTTTEEEEEETTTT----------EEEEEETTEEEE
T ss_pred Eee----cCCCCcEEEEecCCCCCceeeeeecc--cccceEEEeecCcEEEEEeCCCC----------EEEEEECCCCCe
Confidence 521 12234567777765432 2211111 12234566777777766543322 344444333322
Q ss_pred eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 455 EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
..+ +.+-. ...++++. +.+|....... ..|...+..++
T Consensus 202 ~~v-~~~~~-~P~~lav~--~~~lYwtd~~~--~~I~~~~~~~g 239 (263)
T d1npea_ 202 RKV-LEGLQ-YPFAVTSY--GKNLYYTDWKT--NSVIAMDLAIS 239 (263)
T ss_dssp EEE-EECCC-SEEEEEEE--TTEEEEEETTT--TEEEEEETTTT
T ss_pred EEE-ECCCC-CcEEEEEE--CCEEEEEECCC--CEEEEEECCCC
Confidence 222 21212 23456653 56666665432 16666666544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.37 E-value=0.96 Score=41.10 Aligned_cols=132 Identities=9% Similarity=0.115 Sum_probs=83.4
Q ss_pred eeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCC-CeeEEEecCCCCEEEE
Q 005140 192 DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVT 270 (712)
Q Consensus 192 ~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t 270 (712)
..+++-++.....+.+ ..-.-.+.--+|..+.||--+...+.|+|++ +..++..+..+ .|..-.|-.+. .|+.
T Consensus 45 ~~VvIidl~n~~~~~R----rpi~AdsAIMhP~~~IiALrag~~LQiFnle-tK~klks~~~~e~VvfWkWis~~-~L~l 118 (327)
T d1utca2 45 AQVVIIDMNDPSNPIR----RPISADSAIMNPASKVIALKAGKTLQIFNIE-MKSKMKAHTMTDDVTFWKWISLN-TVAL 118 (327)
T ss_dssp EEEEEEETTSTTSCEE----EECCCSEEEECSSSSEEEEEETTEEEEEETT-TTEEEEEEECSSCCCEEEESSSS-EEEE
T ss_pred ceEEEEECCCCCccee----cccchhhhhcCCCCcEEEEecCCeEEEEehh-HhhhhceEEcCCCcEEEEecCCC-EEEE
Confidence 3455666633333322 1222334567899999999887779999999 88888877654 48888887554 4555
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--------CCe
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--------KNM 341 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--------d~~ 341 (712)
.... .|+-|++... .+.+.|..|..-. +...-..+-++ +.+.++..+ .|.
T Consensus 119 VT~t-----------aVYHW~~~g~s~P~k~fdR~~~L~---------~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~ 177 (327)
T d1utca2 119 VTDN-----------AVYHWSMEGESQPVKMFDRHSSLA---------GCQIINYRTDA-KQKWLLLTGISAQQNRVVGA 177 (327)
T ss_dssp ECSS-----------EEEEEESSSSCCCEEEEECCGGGT---------TCEEEEEEECT-TSCEEEEEEEEEETTEEEEE
T ss_pred EcCC-----------ceEEEcccCCCCchhhhhhccccc---------CceEEEEEECC-CCCEEEEEeEecCCCceeEE
Confidence 5554 6999998432 4566665554321 00000356677 888777554 367
Q ss_pred EEEEEcCCc
Q 005140 342 ISVYETESF 350 (712)
Q Consensus 342 i~iwd~~~~ 350 (712)
+++|..+..
T Consensus 178 mQLYS~er~ 186 (327)
T d1utca2 178 MQLYSVDRK 186 (327)
T ss_dssp EEEEETTTT
T ss_pred EEEEEeccC
Confidence 889988744
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.34 E-value=1.2 Score=42.03 Aligned_cols=143 Identities=11% Similarity=0.166 Sum_probs=85.3
Q ss_pred eEEEEE--eeCCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC---ceeEEEEccCCCeEEEEeccC-----
Q 005140 466 IIAFAW--EPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGRFIVLAGLKG----- 534 (712)
Q Consensus 466 v~~~~~--sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~~~~----- 534 (712)
.+.+.. .++|. +|++....+...+|.+|++..... ....+.++... ..+.+++..+|.++++-....
T Consensus 99 PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~--~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~ 176 (340)
T d1v04a_ 99 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 176 (340)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHH
T ss_pred ccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCC--eEEEEeecCCccccCccceEEecCCCEEEecCccCcChhh
Confidence 344444 34565 444544433445899999975432 34455555433 468999999999888832111
Q ss_pred ---------CCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce-eeee---c-cc
Q 005140 535 ---------FNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LYRT---L-KD 600 (712)
Q Consensus 535 ---------~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~---~-~~ 600 (712)
..|.+..||....+.+.. .-...+.+++|||+++|+.+... .+.|++|++.+.. +... . ..
T Consensus 177 ~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~----~~~i~~y~~~~~~~l~~~~~~~l~~ 251 (340)
T d1v04a_ 177 KSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELL----AHKIHVYEKHANWTLTPLRVLSFDT 251 (340)
T ss_dssp HHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGG----GTEEEEEEECTTSCEEEEEEEECSS
T ss_pred hhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCC----CCeEEEEEeCCCcccceEEEecCCC
Confidence 134566666655444332 23567899999999999888774 6789999887542 1111 1 13
Q ss_pred ceeeeEEecCCCCCC
Q 005140 601 HFFQFLWRPRPPSFL 615 (712)
Q Consensus 601 ~i~~~~w~p~~~~l~ 615 (712)
..-.+.+.+.+..+.
T Consensus 252 ~pDNi~~d~~~g~lw 266 (340)
T d1v04a_ 252 LVDNISVDPVTGDLW 266 (340)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred CCCccEEecCCCEEE
Confidence 344566666443333
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.28 E-value=1 Score=40.81 Aligned_cols=248 Identities=10% Similarity=0.028 Sum_probs=125.3
Q ss_pred CCEEEEecCCeEEEEEcCCceecc--c---ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc--ee
Q 005140 331 DKYFAKLGKNMISVYETESFTLID--K---KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE--LR 403 (712)
Q Consensus 331 g~~la~~~d~~i~iwd~~~~~~~~--~---~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~ 403 (712)
|.||..+..+.|+-..++...... . .......+..++|.+.++.|.. + ......|+..++..... +.
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iyw-s-----d~~~~~I~~~~l~g~~~~~v~ 74 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYW-T-----DISEPSIGRASLHGGEPTTII 74 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEE-E-----ETTTTEEEEEESSSCCCEEEE
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEE-E-----ECCCCeEEEEEcccCCcEEEE
Confidence 456777777778777776433211 1 1112223667889888777754 2 22334566666543322 21
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
...+. ....++...-+..|+....... .+...+..+.....+ +...-..+..+++.|...++.....
T Consensus 75 ~~~~~--~p~~iAvD~~~~~lY~~d~~~~----------~I~~~~~dg~~~~~l-~~~~l~~p~~l~vdp~~g~ly~t~~ 141 (263)
T d1npea_ 75 RQDLG--SPEGIALDHLGRTIFWTDSQLD----------RIEVAKMDGTQRRVL-FDTGLVNPRGIVTDPVRGNLYWTDW 141 (263)
T ss_dssp CTTCC--CEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEE-ECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred Eeccc--cccEEEEeccCCeEEEeccCCC----------EEEEEecCCceEEEE-ecccccCCcEEEEecccCcEEEeec
Confidence 11111 2233444555556655443221 233333332222222 2122356889999998887776654
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEE
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVE 562 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~ 562 (712)
......|.-.+++.... ..+..-.-...+.+++.+.++.|+.+..+ .+.|...++++........ .....+++
T Consensus 142 ~~~~~~I~r~~~dG~~~----~~i~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~~g~~~~~v~~~~~~P~~la 215 (263)
T d1npea_ 142 NRDNPKIETSHMDGTNR----RILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVT 215 (263)
T ss_dssp CSSSCEEEEEETTSCCC----EEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEE
T ss_pred CCCCcEEEEecCCCCCc----eeeeeecccccceEEEeecCcEEEEEeCC--CCEEEEEECCCCCeEEEECCCCCcEEEE
Confidence 32211333334432211 12222122345789999988888777532 6789999998544322111 12234666
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEec-Cceeeeec---ccceeeeEEec
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTL---KDHFFQFLWRP 609 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~---~~~i~~~~w~p 609 (712)
+. +.+|...... .+.|...+.. |..+...+ ....+.+...+
T Consensus 216 v~--~~~lYwtd~~----~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 216 SY--GKNLYYTDWK----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EE--TTEEEEEETT----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EE--CCEEEEEECC----CCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 64 4556555542 5666666664 44333332 23444555443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=1.5 Score=39.76 Aligned_cols=227 Identities=8% Similarity=-0.081 Sum_probs=113.0
Q ss_pred EEEEEecCceEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeecc
Q 005140 227 YLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFK 302 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~ 302 (712)
+|.++....|+-.++. +.....-. ....+..++|.+.++.|....... +.|.-.++.... ....+.
T Consensus 3 fLl~s~~~~I~~~~l~-~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~---------~~I~~~~l~~~~~~~~~~~~~ 72 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ---------RMICSTQLDRAHGVSSYDTVI 72 (266)
T ss_dssp EEEEECBSSEEEEETT-SCCCEEEECSCSSEEEEEEETTTTEEEEEETTT---------TEEEEEEC--------CEEEE
T ss_pred EEEEECCCeEEEEECC-CCcceeeeCCCCceEEEEEEeCCCEEEEEECCC---------CEEEEEEecCCCCCcceEEEE
Confidence 6777777778877877 33322222 233588999999888887665431 556655543211 111111
Q ss_pred CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEee
Q 005140 303 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380 (712)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~ 380 (712)
.... ..+. .+++.+ .+..|..+. .+.|.+.++..................+++.|...+|..
T Consensus 73 ~~~~-------~~p~-----glAvD~-~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~--- 136 (266)
T d1ijqa1 73 SRDI-------QAPD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW--- 136 (266)
T ss_dssp CSSC-------SCCC-----EEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE---
T ss_pred eCCC-------CCcc-----eEEEee-ccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEE---
Confidence 1100 0111 244433 334343333 789999998854432222223345788999997766665
Q ss_pred cCCCCCCCeEEEEEecCCccc--eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005140 381 ELGGGNQPARVSLVQIPSKEE--LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 458 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 458 (712)
...+...+|...++..... +....+ .....+++.+.+..|+....... .|+.+...+.....+.
T Consensus 137 --~~~~~~~~I~r~~~dGs~~~~l~~~~~--~~p~gl~iD~~~~~lYw~d~~~~----------~I~~~~~dG~~~~~~~ 202 (266)
T d1ijqa1 137 --TDWGTPAKIKKGGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTIL 202 (266)
T ss_dssp --EECSSSCEEEEEETTSCCEEEEECSSC--SCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEE
T ss_pred --eccCCCcceeEeccCCCceeccccccc--ceeeEEEeeccccEEEEecCCcC----------EEEEEECCCCCEEEEE
Confidence 2233445777777654322 211111 12234667777887777644322 3444444333222222
Q ss_pred -ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 459 -LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 459 -l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
.........++++. +.+|..+.... ..|...+..+
T Consensus 203 ~~~~~~~~p~~lav~--~~~ly~td~~~--~~I~~~~~~~ 238 (266)
T d1ijqa1 203 EDEKRLAHPFSLAVF--EDKVFWTDIIN--EAIFSANRLT 238 (266)
T ss_dssp ECTTTTSSEEEEEEE--TTEEEEEETTT--TEEEEEETTT
T ss_pred eCCCcccccEEEEEE--CCEEEEEECCC--CeEEEEECCC
Confidence 11112234455544 56666655432 1555555443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.52 E-value=1.2 Score=41.95 Aligned_cols=186 Identities=12% Similarity=0.233 Sum_probs=99.5
Q ss_pred EEEEEecCCccceeeeeeeeecceeEE--E--CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC----
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMY--W--QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN---- 461 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~--~--s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~---- 461 (712)
-|+.|++. ++.+..........+.+. + ...+..+++++.+... ...+.+|.+.........+....
T Consensus 51 Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~-----~~~l~~~~id~~~~~l~~~~~~~~p~~ 124 (353)
T d1h6la_ 51 GLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEG-----KNTIEIYAIDGKNGTLQSITDPNRPIA 124 (353)
T ss_dssp CCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTT-----TCEEEEEEEETTTTEEEECSCSSSCEE
T ss_pred CEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCc-----ceeEEEEEecCcccccccccccccccc
Confidence 36677763 444444333333333332 2 2223346666665321 01256777765433322221110
Q ss_pred -CCCceEEEEE--eeC-CCEEEEEEc-CCCCCeEEEEEeec-ccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccC
Q 005140 462 -KNDKIIAFAW--EPK-GHRFAVIHG-DSPRPDISFYSMRT-AQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 462 -h~~~v~~~~~--sp~-g~~l~~~~~-d~~~~~v~i~d~~~-~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~ 534 (712)
-...+..+|+ +|. |...++... ++ .+..|.+.. +.+......+..+. ...+..+.+.+....|+++-.
T Consensus 125 ~~~~~vYGlc~y~~~~~g~~~afv~~k~G---~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE-- 199 (353)
T d1h6la_ 125 SAIDEVYGFSLYHSQKTGKYYAMVTGKEG---EFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEE-- 199 (353)
T ss_dssp CSSSSCCCEEEEECTTTCCEEEEEECSSS---EEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEET--
T ss_pred cccCcceEEEEEecCCCCeEEEEEEcCCc---eEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecC--
Confidence 0123556666 564 555555555 45 788887753 22222345666666 336788999999999999876
Q ss_pred CCceEEEEECC-----cceeeeecc----ccceeeEE--ECCCCC-EEEEEEccceeccccEEEEEecC
Q 005140 535 FNGQLEFYNVD-----ELETMATAE----HFMATDVE--WDPTGR-YVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 535 ~dg~v~iwd~~-----~~~~~~~~~----~~~v~~~~--~spdg~-~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+..++.++.+ ....+.... ..-+-.++ -.++|. ||++++.. ++++.||+..+
T Consensus 200 -~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG----~n~f~vydr~~ 263 (353)
T d1h6la_ 200 -DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG----NSSYAIYERQG 263 (353)
T ss_dssp -TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG----GTEEEEEESST
T ss_pred -ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC----CCeEEEEecCC
Confidence 5566666654 223332211 13344444 344544 77777764 89999999865
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.41 E-value=3.2 Score=42.41 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=35.2
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCC-EEEEEE
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGR-YVATAV 574 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~-~l~t~s 574 (712)
+-.|..++.++. ||.++.||..+|+.+-+.+. ....-+.|..+|+ ||+..+
T Consensus 481 sTagglVF~G~~---Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~ 535 (596)
T d1w6sa_ 481 ATAGDLVFYGTL---DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (596)
T ss_dssp EETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EecCCEEEEECC---CCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEe
Confidence 345777777776 99999999999999865332 1222355667887 566554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.30 E-value=4.8 Score=40.68 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=35.2
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCC-EEEEEEc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~-~l~t~s~ 575 (712)
+-.|.++++++. ||.++-||..+|+.+-+... ..-.-+.+..+|+ ||+..+.
T Consensus 466 ~TagglVF~G~~---dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG 521 (560)
T d1kv9a2 466 STAGNLVFQGTA---AGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (560)
T ss_dssp EETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EECCCEEEEECC---CCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence 335667777776 99999999999999865332 1112356667886 6665543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.68 E-value=5 Score=39.21 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV 297 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~ 297 (712)
....++|+|.|||+.|++--.. |.|++++..++..
T Consensus 26 L~~P~~la~~pdg~llVter~~----------G~i~~v~~~~g~~ 60 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERAT----------GKILRVNPESGSV 60 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTT----------CEEEEECTTTCCE
T ss_pred CCCceEEEEeCCCeEEEEEecC----------CEEEEEECCCCcE
Confidence 3457899999999988887556 7899998777654
|
| >d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Smg-4/UPF3 domain: RNA processing protein UPF3x, RRM domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.33 Score=35.38 Aligned_cols=67 Identities=12% Similarity=0.295 Sum_probs=49.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceE-EEeccCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGL-WMPVDPETQKS-LGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~-~~~~d~~~~~~-~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
++|+|..||- ...|+.+.+.++..|++.- . +.+-+...+.+ ---|+|.|.+.++...-.+..+|+.+
T Consensus 2 tKvVvRrLPP------~Lte~~F~~~l~~~~~~d~--~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F 70 (91)
T d1uw4a_ 2 SKVVIRRLPP------TLTKEQLQEHLQPMPEHDY--FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECT------TCCHHHHHHHHCSCCCEEE--EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred ceEEEecCCC------CCCHHHHHHHhCCcCceEE--EEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 5899999995 3337778888888888765 3 33333322222 34799999999999999999999876
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.89 E-value=9.2 Score=38.59 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=35.5
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccc-cce--eeEEECCCCC-EEEEEEc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMA--TDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v--~~~~~spdg~-~l~t~s~ 575 (712)
+-.|..+++++. ||.++.||..+|+.+-+.+. ..+ .-+.|..+|+ ||+..+.
T Consensus 485 stagglVF~G~~---dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G 540 (573)
T d1kb0a2 485 TTAGNVVFQGTA---DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG 540 (573)
T ss_dssp EETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEcCCEEEEECC---CCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence 346778887776 99999999999999865332 111 1255667887 6665554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.13 E-value=5.3 Score=39.01 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=33.1
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeec--------CCCeeEEEecCC
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA--------HPQVKLIDFSPG 264 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~--------~~~v~~i~~Spd 264 (712)
.-++|+|.|||++|++--..| |.+++.. +.. .+..+. ..+...|+|+|+
T Consensus 28 ~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 28 KPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 335799999999998886556 7788765 332 222221 234789999996
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.87 E-value=21 Score=35.75 Aligned_cols=53 Identities=11% Similarity=0.387 Sum_probs=37.1
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCC-EEEEEEc
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~-~l~t~s~ 575 (712)
.+..|..+++++. ||.++-||..+|+.+-.... ..-.-+.|..+|+ ||+..+.
T Consensus 493 lstagglVF~Gt~---dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag 549 (582)
T d1flga_ 493 LATAGNLVFTGTG---DGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred eEEcCCeEEEeCC---CCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence 3456778877776 99999999999999876332 1222366778996 6665543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.44 E-value=17 Score=32.08 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=34.9
Q ss_pred CCCEEEEEEcCCC--CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccC--CCceEEEEECCcc
Q 005140 474 KGHRFAVIHGDSP--RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG--FNGQLEFYNVDEL 547 (712)
Q Consensus 474 ~g~~l~~~~~d~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~--~dg~v~iwd~~~~ 547 (712)
.++.++.++.++. ...+..|+..+.. ...+...+.....+-+...+++.+++|+... .-..+.+||+.+.
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETET----WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE----EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eeeEEEecCccccccccceeeeeeccee----eecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence 4555555544322 2356677765432 1122222222222233344788888876522 1235788998853
|