Citrus Sinensis ID: 005141

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710--

MQMQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADNSSLSSSSNTTVTLTPPPPTPTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVTTNMHIFVMC

ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccHHHcccHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccEEcc

cHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHEccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHcHccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHccHHHHHHHHHcccccccccHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccEEEEEc

mqmqalghidfglrspllvpapqprtsskrpsisklntttvsSASKWAHRLLADfqfttadnsslssssnttvtltpppptptnrhvsipiDFYQALGAETHFLGDGIRRAYEariskppqygfspdaLISRRQILQAACETLANASSrreynqgladdhadtiltevpwdkvpGALLVLQEAGETEVVLRIGESLlrerlpksFKQDVVLAMALAYVDIsrdamafnppdyiggCEMLERALKLLQEegasslapdLQAQIDETLEEINPRCVLEllglplsgeyQARREEGLHGMLNILWAVggggataiaggftreSFMNEAFLRMTSAEQVKLFsatpnsipaetFEAYGVALALVAQAFvgkqphliaDADNMFKHLqqnkvptlrdlgsiyipleKHEMEFALERGLCSLLVGKLdecrlwlgldsdkspyrnpaiVDFVlenskeaddndlpGLCKLLETWLAevvfprfrdtsdirfklgdyyddptVLRYLERlegngsspLAAAAAIVRIGATEATAVLDHVKSSTIQALQKvfplgqgdkaVKYVehgetydpvpvveteesltsdqnnfafttdaygtsssddihgeqsiTDKIKDVSVKIMCAGVAIGLVTLVGlkylptrnissVQQKEIGlakasdiidagplldeklgqelPRMDARLAEDIVRKWQniksqafgpdhslgklpevttnMHIFVMC

MQMQALGHidfglrsplLVPApqprtsskrpsisklntttVSSASKWAHRLLADFQFTTadnsslssssnttvtltpppptptNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGEsllrerlpksfKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLgldsdkspyrnPAIVDFVLENSKEADDNDLPGLCKLLETWLAEvvfprfrdtsdirfklgdyyddpTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAygtsssddihgEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKsqafgpdhslgklpevttNMHIFVMC

MQMQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADnsslssssnttvtltpppptptnRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWavggggataiaggFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLaaaaaIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVTTNMHIFVMC

**********************************************WAHRLLADFQF****************************HVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANA*****YNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQ***********QAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVV************FAFT*****************ITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLG**L*RMDARLAEDIVRKWQNIKSQAFG****LGKLPEVTTNMHIFV**

******G*IDFGLRSPL*********************************************************************VSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQ******************VPGALLVLQEAGETEVVLRIGESLLRERL**SFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGA**LAPDLQAQIDETLEEINPRCVLELLGLPL***********LHGMLNILWAV************TRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRL********************************PGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLR***************************************************************************************************************SVKIMCAGVAIGLVTLVGLKY******************************************RLAEDIVRKWQNIKSQAFGPDHSLGKLPEVTTNMHIFVMC

MQMQALGHIDFGLRSPLLVPA******************TVSSASKWAHRLLADFQFTTA*********************PTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVTTNMHIFVMC

****ALGHIDFGLRSPLLVPAPQPR*********************W*HRLLADFQFTT***************LTPPPPT***RHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGN*********************************************************************************************QSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISS**Q*EI*L*KASDI*D**********QELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVTTNMHIFVMC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		712	2.2.26 [Sep-21-2011]
Q9FIG9		801	Protein ACCUMULATION AND	yes	no	0.962	0.855	0.603	0.0
Q8VY16		819	Plastid division protein	no	no	0.523	0.455	0.266	5e-21

>sp\|Q9FIG9\|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1	Back alignment and function desciption

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/721 (60%), Positives = 527/721 (73%), Gaps = 36/721 (4%)

Query: 3   MQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADN 62
           M+AL H+  GL SP  +    P T+  R S +   +TT+ SASKWA RLL+DF FT+  +
Sbjct: 1   MEALSHVGIGL-SPFQLCRLPPATTKLRRSHN--TSTTICSASKWADRLLSDFNFTSDSS 57

Query: 63  SSLSSSSNTTVTLTPPPPTPTN--RHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPP 120
           SS  +++ TT TL  PPP+     RHV IPIDFYQ LGA+THFL DGIRRA+EAR+SKPP
Sbjct: 58  SSSFATATTTATLVSPPPSIDRPERHVPIPIDFYQVLGAQTHFLTDGIRRAFEARVSKPP 117

Query: 121 QYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVL 180
           Q+GFS DALISRRQILQAACETL+N  SRREYN+GL DD   T++T+VPWDKVPGAL VL
Sbjct: 118 QFGFSDDALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVL 177

Query: 181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLE 240
           QE GETE+VLR+GE+LL+ERLPKSFKQDVVL MALA++D+SRDAMA +PPD+I G E +E
Sbjct: 178 QEGGETEIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYEFVE 237

Query: 241 RALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNI 300
            ALKLLQEEGASSLAPDL+AQIDETLEEI PR VLELLGLPL  +Y A+R  GL G+ NI
Sbjct: 238 EALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLELLGLPLGDDYAAKRLNGLSGVRNI 297

Query: 301 LWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALV 360
           LW+VGGGGA+A+ GG TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALALV
Sbjct: 298 LWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALALV 357

Query: 361 AQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGK 420
           AQAF+GK+PHL+ DAD  F+ LQQ KV  +     +Y      E++F LERGLC+LL+GK
Sbjct: 358 AQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLIGK 417

Query: 421 LDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDT 480
           +DECR+WLGLDS+ S YRNPAIV+FVLENS   D++DLPGLCKLLETWLA VVFPRFRDT
Sbjct: 418 VDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFRDT 477

Query: 481 SDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQAL 540
            D +FKLGDYYDDP VL YLER+E    SPLAAAAA+ RIGA       +HVK+S +QAL
Sbjct: 478 KDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQAL 530

Query: 541 QKVFPLGQGDK-------------AVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDA 587
           QKVFP    D+             +V  V +    D  P V   E++   +N   F T+ 
Sbjct: 531 QKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FETND 587

Query: 588 YGT------SSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQ 641
           Y        SS D+   E S+ D +K+ SVKI+ AGVAIGL++L   KY   ++ SS Q+
Sbjct: 588 YAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSFQR 646

Query: 642 KEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPE 701
           K++  +  SD+   G +  +   + LPRMDAR AE+IV KWQ IKS AFGPDH +  LPE
Sbjct: 647 KDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEMLPE 705

Query: 702 V 702
           V
Sbjct: 706 V 706

Component of the plastid division machinery. Involved in the initiation of proplastid and plastid division (including chloroplasts, statoliths and leukoplasts). Promotes the assembly and/or stabilization of the plastid-dividing FtsZ ring, functioning as an antagonistic regulator of FtsZ dynamics against CDP1. Relays plastid division site position between stroma and outer surface via interactions with the stromal FtsZ ring and the outer membrane PDV2 that recruits cytoplasmic ARC5 ring. Required for plastid equatorial positioning of PDV2 and ARC5. May contribute to gravitropism in stems and hypocotyls. Seems to influence stromule (stroma-filled tubular extensions of the plastid envelope membrane) length and frequency.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8VY16\|CDP1_ARATH Plastid division protein CDP1, chloroplastic OS=Arabidopsis thaliana GN=CDP1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		712
224085790		768	predicted protein [Populus trichocarpa]	0.936	0.868	0.681	0.0
225427387		800	PREDICTED: protein ACCUMULATION AND REPL	0.971	0.865	0.673	0.0
356562383		793	PREDICTED: protein ACCUMULATION AND REPL	0.955	0.857	0.641	0.0
357438161		796	hypothetical protein MTR_1g023310 [Medic	0.942	0.842	0.676	0.0
356553409		794	PREDICTED: protein ACCUMULATION AND REPL	0.962	0.862	0.649	0.0
449470114		786	PREDICTED: protein ACCUMULATION AND REPL	0.952	0.862	0.662	0.0
147860071		789	hypothetical protein VITISV_009566 [Viti	0.956	0.863	0.661	0.0
255538836		781	heat shock protein binding protein, puta	0.946	0.862	0.638	0.0
365222906		819	Hop-interacting protein THI044 [Solanum	0.974	0.847	0.636	0.0
33436339		801	division protein [Arabidopsis thaliana]	0.962	0.855	0.600	0.0

>gi\|224085790\|ref\|XP_002307697.1\| predicted protein [Populus trichocarpa] gi\|222857146\|gb\|EEE94693.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/707 (68%), Positives = 552/707 (78%), Gaps = 40/707 (5%)

Query: 3   MQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADN 62
           M+AL H+  GL +P L P        K+PS  K++TT   SASKWA RLL+DFQF T+ +
Sbjct: 1   MEALRHVGIGLCTPKLFPP------FKKPS--KVSTTITCSASKWADRLLSDFQFFTSTD 52

Query: 63  SSLSS------SSNTTVTLTPPPPTPTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARI 116
           +S S       SS+T     PPP +P  R+VSIP+ FYQ LGAETHFLGDGI+RAYEAR+
Sbjct: 53  TSSSDLLHHPLSSSTATLAPPPPLSPPERYVSIPLHFYQVLGAETHFLGDGIKRAYEARV 112

Query: 117 SKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGA 176
           SKPPQYGFS DAL+SRRQILQAACETLA+ +SRR+YNQGL DD  DTI+T+VPWDKVPGA
Sbjct: 113 SKPPQYGFSQDALVSRRQILQAACETLADPASRRDYNQGLIDDETDTIVTQVPWDKVPGA 172

Query: 177 LLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGC 236
           L VLQEAGETEVVL+IGESLLRERLPKSFKQDVVLAM LAYVD+SRDAMA +PPD+I G 
Sbjct: 173 LCVLQEAGETEVVLQIGESLLRERLPKSFKQDVVLAMVLAYVDMSRDAMALDPPDFIRGR 232

Query: 237 EMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHG 296
           E+LERALKLLQEEGASSLAPDLQAQIDETLEEI PR VLELL LPLS EY+ RREEGL G
Sbjct: 233 EVLERALKLLQEEGASSLAPDLQAQIDETLEEITPRSVLELLALPLSEEYRTRREEGLQG 292

Query: 297 MLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVA 356
           + N LWAVGGGGA  +AGGFTRE FMNEAFLRMT+AEQV LF  TP++IPA+ FE YGVA
Sbjct: 293 VRNTLWAVGGGGAAPVAGGFTREDFMNEAFLRMTAAEQVDLFVTTPSNIPAQNFEVYGVA 352

Query: 357 LALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSL 416
           LALVAQAF+GK+PHLI DADN+F  LQQ KV     L  ++  +E  +++F LERGLCSL
Sbjct: 353 LALVAQAFIGKKPHLITDADNLFGQLQQIKVTNQGSLVPVFGSMENRDIDFGLERGLCSL 412

Query: 417 LVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPR 476
           LVG+LDEC  W+GLDSD SPYRNP I DF++ENSK+ DD++LPGLCKLLETWL EVVFPR
Sbjct: 413 LVGELDECCKWMGLDSDNSPYRNPPIFDFIMENSKDDDDSNLPGLCKLLETWLMEVVFPR 472

Query: 477 FRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSST 536
           FRDT D  FKLGDYYDDPTVLRYLER EG G SPLAAAAAIVRIGA EATAV+DHVK+S 
Sbjct: 473 FRDTKDREFKLGDYYDDPTVLRYLERQEGGGRSPLAAAAAIVRIGA-EATAVIDHVKASA 531

Query: 537 IQALQKVFPLGQGDKAVKYVEH-GETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDD 595
           IQALQKVFPLG  D   ++ E+ G   +P  +                         SD+
Sbjct: 532 IQALQKVFPLGHKDMGAEFHENDGINSNPEEIY------------------------SDE 567

Query: 596 IHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDA 655
           +  E+ IT+KIKD S+KIMCAGVAIGL+TL GLKY P R  S ++QKEIG A ASD I+ 
Sbjct: 568 VPEEELITEKIKDASIKIMCAGVAIGLLTLAGLKYFPPRTGSFIRQKEIGSAMASDTINL 627

Query: 656 GPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEV 702
              +DE++ +ELPRMDAR AEDIVRKWQNIKSQAFGPDH L KLPEV
Sbjct: 628 NSAVDEQISEELPRMDARFAEDIVRKWQNIKSQAFGPDHCLAKLPEV 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225427387\|ref\|XP_002262674.1\| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Vitis vinifera] gi\|296088380\|emb\|CBI37371.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356562383\|ref\|XP_003549451.1\| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|357438161\|ref\|XP_003589356.1\| hypothetical protein MTR_1g023310 [Medicago truncatula] gi\|355478404\|gb\|AES59607.1\| hypothetical protein MTR_1g023310 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356553409\|ref\|XP_003545049.1\| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|449470114\|ref\|XP_004152763.1\| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147860071\|emb\|CAN78894.1\| hypothetical protein VITISV_009566 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255538836\|ref\|XP_002510483.1\| heat shock protein binding protein, putative [Ricinus communis] gi\|223551184\|gb\|EEF52670.1\| heat shock protein binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|365222906\|gb\|AEW69805.1\| Hop-interacting protein THI044 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|33436339\|gb\|AAQ18645.1\| division protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		712
TAIR\|locus:2162341		801	ARC6 "AT5G42480" [Arabidopsis	0.962	0.855	0.575	1.3e-201
UNIPROTKB\|Q55559		714	sll0169 "Sll0169 protein" [Syn	0.400	0.399	0.282	2.3e-25
TAIR\|locus:2094143		819	PARC6 "paralog of ARC6" [Arabi	0.540	0.470	0.254	4.5e-24

TAIR\|locus:2162341 ARC6 "AT5G42480" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1951 (691.8 bits), Expect = 1.3e-201, P = 1.3e-201
 Identities = 415/721 (57%), Positives = 500/721 (69%)

Query:     3 MQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADX 62
             M+AL H+  GL SP  +    P T+  R S +   +TT+ SASKWA RLL+DF FT+   
Sbjct:     1 MEALSHVGIGL-SPFQLCRLPPATTKLRRSHN--TSTTICSASKWADRLLSDFNFTSDSS 57

Query:    63 XXXXXXXXXXXXXXXX--XXXXXXRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPP 120
                                     RHV IPIDFYQ LGA+THFL DGIRRA+EAR+SKPP
Sbjct:    58 SSSFATATTTATLVSPPPSIDRPERHVPIPIDFYQVLGAQTHFLTDGIRRAFEARVSKPP 117

Query:   121 QYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVL 180
             Q+GFS DALISRRQILQAACETL+N  SRREYN+GL DD   T++T+VPWDKVPGAL VL
Sbjct:   118 QFGFSDDALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVL 177

Query:   181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLE 240
             QE GETE+VLR+GE+LL+ERLPKSFKQDVVL MALA++D+SRDAMA +PPD+I G E +E
Sbjct:   178 QEGGETEIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYEFVE 237

Query:   241 RALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNI 300
              ALKLLQEEGASSLAPDL+AQIDETLEEI PR VLELLGLPL  +Y A+R  GL G+ NI
Sbjct:   238 EALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLELLGLPLGDDYAAKRLNGLSGVRNI 297

Query:   301 LWXXXXXXXXXXXXXFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALV 360
             LW              TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALALV
Sbjct:   298 LWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALALV 357

Query:   361 AQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGK 420
             AQAF+GK+PHL+ DAD  F+ LQQ KV  +     +Y      E++F LERGLC+LL+GK
Sbjct:   358 AQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLIGK 417

Query:   421 LDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDT 480
             +DECR+WLGLDS+ S YRNPAIV+FVLENS   D++DLPGLCKLLETWLA VVFPRFRDT
Sbjct:   418 VDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFRDT 477

Query:   481 SDIRFKLGDYYDDPTVLRYLERLEGNGSSPLXXXXXIVRIGATEATAVLDHVKSSTIQAL 540
              D +FKLGDYYDDP VL YLER+E    SPL     + RIGA       +HVK+S +QAL
Sbjct:   478 KDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQAL 530

Query:   541 QKVFPLGQGDK-AVKYVEHGETY---DPV---------PVVETEESLTSDQNNFAFTTDA 587
             QKVFP    D+ + +  +  ET    DPV         P V   E++   +N   F T+ 
Sbjct:   531 QKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FETND 587

Query:   588 Y----GTSSS--DDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQ 641
             Y    G S S  D+   E S+ D +K+ SVKI+ AGVAIGL++L   KY   ++ SS Q+
Sbjct:   588 YAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSFQR 646

Query:   642 KEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPE 701
             K++  +  SD+   G +  +   + LPRMDAR AE+IV KWQ IKS AFGPDH +  LPE
Sbjct:   647 KDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEMLPE 705

Query:   702 V 702
             V
Sbjct:   706 V 706

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB\|Q55559 sll0169 "Sll0169 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]	Back alignment and assigned GO terms

TAIR\|locus:2094143 PARC6 "paralog of ARC6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIG9	ARC6_ARATH	No assigned EC number	0.6033	0.9620	0.8551	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		712
pfam13355		117	pfam13355, DUF4101, Protein of unknown function (D	5e-08

>gnl\|CDD\|222068 pfam13355, DUF4101, Protein of unknown function (DUF4101)	Back alignment and domain information

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 675 AEDIVRKWQNIKSQAFGPDHSLGKLPEVTT 704
           AE +V+ W + K+QA GP H +  L EV T
Sbjct: 1   AEQLVQTWLDAKAQALGPPHDIDSLSEVLT 30

This is a family of uncharacterized proteins, and is sometimes found in combination with pfam00226. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		712
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	99.74
KOG0713		336	consensus Molecular chaperone (DnaJ superfamily) [	99.66
PRK14288		369	chaperone protein DnaJ; Provisional	99.61
KOG0691		296	consensus Molecular chaperone (DnaJ superfamily) [	99.59
PRK14279		392	chaperone protein DnaJ; Provisional	99.55
PRK14296		372	chaperone protein DnaJ; Provisional	99.54
PRK14286		372	chaperone protein DnaJ; Provisional	99.52
PRK14285		365	chaperone protein DnaJ; Provisional	99.51
PRK14295		389	chaperone protein DnaJ; Provisional	99.51
PRK14277		386	chaperone protein DnaJ; Provisional	99.51
PRK14298		377	chaperone protein DnaJ; Provisional	99.5
KOG0712		337	consensus Molecular chaperone (DnaJ superfamily) [	99.5
PRK14278		378	chaperone protein DnaJ; Provisional	99.49
PRK14282		369	chaperone protein DnaJ; Provisional	99.49
PRK14284		391	chaperone protein DnaJ; Provisional	99.48
PRK14287		371	chaperone protein DnaJ; Provisional	99.47
PTZ00037		421	DnaJ_C chaperone protein; Provisional	99.47
PRK14294		366	chaperone protein DnaJ; Provisional	99.47
PRK14291		382	chaperone protein DnaJ; Provisional	99.47
PRK14281		397	chaperone protein DnaJ; Provisional	99.47
PRK14299		291	chaperone protein DnaJ; Provisional	99.46
PRK14297		380	chaperone protein DnaJ; Provisional	99.46
PRK14301		373	chaperone protein DnaJ; Provisional	99.46
PF00226		64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.46
PRK14283		378	chaperone protein DnaJ; Provisional	99.45
PRK14276		380	chaperone protein DnaJ; Provisional	99.44
PRK14290		365	chaperone protein DnaJ; Provisional	99.44
PRK10767		371	chaperone protein DnaJ; Provisional	99.44
KOG0715		288	consensus Molecular chaperone (DnaJ superfamily) [	99.42
PRK14280		376	chaperone protein DnaJ; Provisional	99.42
PRK14292		371	chaperone protein DnaJ; Provisional	99.41
KOG0716		279	consensus Molecular chaperone (DnaJ superfamily) [	99.4
KOG0718		546	consensus Molecular chaperone (DnaJ superfamily) [	99.4
PRK14293		374	chaperone protein DnaJ; Provisional	99.39
TIGR02349		354	DnaJ_bact chaperone protein DnaJ. This model repre	99.39
PRK14300		372	chaperone protein DnaJ; Provisional	99.39
PTZ00341		1136	Ring-infected erythrocyte surface antigen; Provisi	99.39
PRK14289		386	chaperone protein DnaJ; Provisional	99.38
KOG0717		508	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK10266		306	curved DNA-binding protein CbpA; Provisional	99.35
smart00271		60	DnaJ DnaJ molecular chaperone homology domain.	99.31
COG2214		237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.27
cd06257		55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.26
TIGR03835		871	termin_org_DnaJ terminal organelle assembly protei	99.17
PRK05014		171	hscB co-chaperone HscB; Provisional	99.15
PRK03578		176	hscB co-chaperone HscB; Provisional	99.14
KOG0719		264	consensus Molecular chaperone (DnaJ superfamily) [	99.14
PHA03102		153	Small T antigen; Reviewed	99.1
PRK00294		173	hscB co-chaperone HscB; Provisional	99.07
KOG0721		230	consensus Molecular chaperone (DnaJ superfamily) [	99.05
KOG0720		490	consensus Molecular chaperone (DnaJ superfamily) [	99.04
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	98.97
PRK01356		166	hscB co-chaperone HscB; Provisional	98.96
KOG0722		329	consensus Molecular chaperone (DnaJ superfamily) [	98.91
KOG0714		306	consensus Molecular chaperone (DnaJ superfamily) [	98.9
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	98.8
PTZ00100		116	DnaJ chaperone protein; Provisional	98.66
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	98.66
PHA02624		647	large T antigen; Provisional	98.53
PRK01773		173	hscB co-chaperone HscB; Provisional	98.42
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.26
TIGR00714		157	hscB Fe-S protein assembly co-chaperone HscB. This	98.19
COG5269		379	ZUO1 Ribosome-associated chaperone zuotin [Transla	97.72
KOG1150		250	consensus Predicted molecular chaperone (DnaJ supe	97.72
KOG0568		342	consensus Molecular chaperone (DnaJ superfamily) [	97.56
KOG0723		112	consensus Molecular chaperone (DnaJ superfamily) [	96.88
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	94.4
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	90.18
KOG3192		168	consensus Mitochondrial J-type chaperone [Posttran	89.4
KOG0431		453	consensus Auxilin-like protein and related protein	85.55
PF13446		62	RPT: A repeated domain in UCH-protein	82.31

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=99.74  E-value=1.8e-18  Score=186.64  Aligned_cols=72  Identities=21%  Similarity=0.292  Sum_probs=66.1

Q ss_pred             cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005141           89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDH  160 (712)
Q Consensus        89 iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~  160 (712)
                      +..|||+||||+++||.+|||||||+++++ |||++..++++++||+.|+|||||||||++|+.||++.....
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~   74 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF   74 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence            457999999999999999999999999998 799998777889999999999999999999999999876543

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14288 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14279 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14296 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14286 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14285 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14295 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14277 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14298 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14278 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14282 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14284 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14287 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PTZ00037 DnaJ_C chaperone protein; Provisional	Back alignment and domain information

>PRK14294 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14291 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14281 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14299 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14297 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14301 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>PRK14283 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14276 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14290 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10767 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14280 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14292 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14293 chaperone protein DnaJ; Provisional	Back alignment and domain information

>TIGR02349 DnaJ_bact chaperone protein DnaJ	Back alignment and domain information

>PRK14300 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional	Back alignment and domain information

>PRK14289 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10266 curved DNA-binding protein CbpA; Provisional	Back alignment and domain information

>smart00271 DnaJ DnaJ molecular chaperone homology domain	Back alignment and domain information

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd06257 DnaJ DnaJ domain or J-domain	Back alignment and domain information

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ	Back alignment and domain information

>PRK05014 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK03578 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA03102 Small T antigen; Reviewed	Back alignment and domain information

>PRK00294 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>PRK01356 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00100 DnaJ chaperone protein; Provisional	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>PHA02624 large T antigen; Provisional	Back alignment and domain information

>PRK01773 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB	Back alignment and domain information

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]	Back alignment and domain information

>PF13446 RPT: A repeated domain in UCH-protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		712
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 65/452 (14%), Positives = 121/452 (26%), Gaps = 165/452 (36%)

Query: 159 DHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLR--ERLPKSFKQDVV------ 210
           D   +IL++   D +      +         LR+  +LL   E + + F ++V+      
Sbjct: 40  DMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 211 LAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEIN 270
           L   +          +     YI   E  +R          + +         +   ++ 
Sbjct: 94  LMSPIKTEQRQP---SMMTRMYI---EQRDRL------YNDNQVFAKYNVSRLQPYLKLR 141

Query: 271 PRCVLELLGLPLSGEYQARREEG--LHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLR 328
            + +LEL           R  +   + G+        G G T +A               
Sbjct: 142 -QALLEL-----------RPAKNVLIDGV-------LGSGKTWVA--------------- 167

Query: 329 MTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAF---VGKQ--PH-LIADADNMFKHL 382
                              +   +Y V   +  + F   +     P  ++     +   +
Sbjct: 168 ------------------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 383 QQNKVPTLRDLGSIYIPLEKHEMEFALERGLC------SLLVGKLDECRLWLGLDSDKSP 436
             N   T R   S  I L  H ++  L R L        LLV  L    +          
Sbjct: 210 DPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN--VQ--------- 254

Query: 437 YRNPAIVD-FVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPT 495
             N    + F           +L   CK+L T          R      F         +
Sbjct: 255 --NAKAWNAF-----------NLS--CKILLT---------TRFKQVTDFLSAATTTHIS 290

Query: 496 V----------------LRYLE------RLEGNGSSPLAAA--AAIVRIGATEATAVLDH 531
           +                L+YL+        E   ++P   +  A  +R    +  A  D+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWDN 346

Query: 532 VKSSTIQALQKVFPLGQGDKAVKYVEHGETYD 563
            K      L  +      + ++  +E  E   
Sbjct: 347 WKHVNCDKLTTII-----ESSLNVLEPAEYRK 373

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		712
2dn9_A		79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.62
1hdj_A		77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.61
2yua_A		99	Williams-beuren syndrome chromosome region 18 prot	99.61
2och_A		73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.61
1wjz_A		94	1700030A21RIK protein; J-domain, DNAJ like protein	99.61
2ej7_A		82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.61
2ctp_A		78	DNAJ homolog subfamily B member 12; J-domain, chap	99.6
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.59
2ctq_A		112	DNAJ homolog subfamily C member 12; J-domain, chap	99.58
1bq0_A		103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.58
2ctr_A		88	DNAJ homolog subfamily B member 9; J-domain, chape	99.56
2lgw_A		99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.55
2dmx_A		92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.55
2ctw_A		109	DNAJ homolog subfamily C member 5; J-domain, chape	99.55
2o37_A		92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.54
2qsa_A		109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.51
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	99.51
3apq_A		210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.47
2l6l_A		155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.45
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	99.44
2ys8_A		90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.37
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	99.33
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	99.33
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	99.32
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.29
1faf_A		79	Large T antigen; J domain, HPD motif, anti-paralle	99.28
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	99.25
1iur_A		88	KIAA0730 protein; DNAJ like domain, riken structur	99.24
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	99.24
3apo_A		780	DNAJ homolog subfamily C member 10; PDI family, th	99.18
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	99.18
2guz_A		71	Mitochondrial import inner membrane translocase su	99.17
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	99.16
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	98.62
2guz_B		65	Mitochondrial import inner membrane translocase su	98.07
2pzi_A		681	Probable serine/threonine-protein kinase PKNG; ATP	89.52

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

Probab=99.62  E-value=2.4e-16  Score=133.79  Aligned_cols=69  Identities=23%  Similarity=0.298  Sum_probs=62.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccC
Q 005141           90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLAD  158 (712)
Q Consensus        90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~  158 (712)
                      ..|||+||||+++++.++||+|||+++++ |||++.+.+.+.++|+.|++||++|+||.+|+.||..+..
T Consensus         6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            46999999999999999999999999987 7999876566788999999999999999999999998654

PyMOL of 2dn9

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A	Back alignment and structure

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1	Back alignment and structure

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A	Back alignment and structure

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}	Back alignment and structure

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}	Back alignment and structure

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}	Back alignment and structure

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}	Back alignment and structure

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}	Back alignment and structure

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1	Back alignment and structure

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1	Back alignment and structure

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C	Back alignment and structure

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J	Back alignment and structure

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A	Back alignment and structure

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}	Back alignment and structure

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A	Back alignment and structure

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		712
d1xbla_		75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	0.004

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75	Back information, alignment and structure


class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 92  DFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRR-QILQAACETLANASSRR 150
           D+Y+ LG         IR+AY+    K        D     + + ++ A E L ++  R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 151 EYNQ 154
            Y+Q
Sbjct: 64  AYDQ 67

PyMOL of d1xbla_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		712
d1xbla_		75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.71
d1hdja_		77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1wjza_		94	CSL-type zinc finger-containing protein 3 (J-domai	99.61
d1gh6a_		114	Large T antigen, the N-terminal J domain {Simian v	99.51
d1fpoa1		76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.42
d1fafa_		79	Large T antigen, the N-terminal J domain {Murine p	99.31
d1nz6a_		98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1iura_		88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.14

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.7e-18  Score=142.59  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=62.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141           91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA  157 (712)
Q Consensus        91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~  157 (712)
                      .|||+||||+++||.+|||+|||+++++ |||++.+++..+.+|+.|++||+||+||.+|..||.+..
T Consensus         3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   70 (75)
T d1xbla_           3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (75)
T ss_dssp             CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTT
T ss_pred             CCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Confidence            5999999999999999999999999987 799987777788899999999999999999999998764

PyMOL of d1xbla_

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}	Back information, alignment and structure

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure