Citrus Sinensis ID: 005149

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710--
MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEccccccccccccccccccHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccHEccccccccccccccHHHHHHHHHHccccccccccccccccccEEEEEccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEccccccEEcccccccccEEccccccccccccccEcccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccEcccccccccccccccccccccccccccccccccccccHHcc
mgdlrdwspepngavfgerpssssssvpsnqtaiGAEYWQRAEEATQGIIaqvqptvvseERRKAVIDYVQRLIRNYLgcevfpfgsvplktylpdgdidltafgglnVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDisfnqlgglstlcfLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYfskfdwdsycislngpvrisslpevvvetpensggdlllSSEFLKECVEqfsvpsrgfdtnsrsfppkhlnivdplkennnlgrsvskgnfyRIRSAFTYGARKlghilsqpeesLTDELRKFFSNTldrhgsgqrpdvqdpvplsryngfgvsstfsgtelcredqtiyesepnssgitencriddeaelcggvgkikvsgmessycrtinephnsgngtavsetrlsgdakdlatsknLNLVISNEtskcsslsgeeskarhaphlyfssstmgngeirngnSEWKQQLnsgsaeknvtsgilpthyketglillngqdenqldvnhgasspvesnhhpslmstipwsteefnfsysgyhasprtvgspraanslsdlsgdyeshqISLNHVWWWYEHalnssyspmspqllsQFQSKNSWDLMQRSlpfrrniipqmsangavprplfypmtppmlpgasfgmeempkhrgtgtyfpntvylf
mgdlrdwspepngavfgerpssssssvpsNQTAIGAEYWQRAEEATQGIIAqvqptvvseerrKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVpsrgfdtnsrsfppkhlnivdplkennnlgrsvskgnfyRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNtldrhgsgqrpdvqdpvplSRYNGFGVSSTFSGTELCREDQtiyesepnssgitenCRIDDEAELCGGVGKIKVSGMESSYCRTinephnsgngtaVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRgtgtyfpntvylF
MGDLRDWSPEPNGAVFGERpssssssvpsNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
*********************************IGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVET****GGDLLLSSEFLKECVEQFS********************************SVSKGNFYRIRSAFTYGARKLGHIL**************************************YNGFGVSSTFSGTELC******************NCRIDDEAELCGGVGKIKVSGME*SYC**********************************************************************************************GILPTHYKETGLILLN******************************WSTEEFNFSYSG*************************SHQISLNHVWWWYEHALNS********************LM***LPFRRNIIP**********PLFY*************************YFP******
*************************************YWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRH****************************************************************************************************************************************************************************************************************************************************************QISLNHVWWWYEHA********************************RNIIPQMSANGAVPRPLFYPMT*****************RGTGTYFPNTVYL*
MGDLRDWSPEPNGAVF***************TAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNE***************HAPHLYFSSSTMGNGEIRNGNSEWK***********VTSGILPTHYKETGLILLNGQDENQLDVNH***********PSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
********************************AIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVS****GTEL***DQ**Y*********************************************************************************CS******S*ARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHAS*RTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEE*PKHRGTGT*FPNTVYLF
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MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query712 2.2.26 [Sep-21-2011]
Q9UTN3684 Poly(A) RNA polymerase ci yes no 0.346 0.361 0.25 4e-05
Q5XG87542 DNA polymerase sigma OS=H no no 0.348 0.457 0.241 0.0009
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid14 PE=1 SV=2 Back     alignment and function desciption
 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 49/296 (16%)

Query: 49  IIAQVQPTVVSEERRKAVIDYV-QRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
            I  + PT      RK ++  + Q +++ +    ++ FGS   K YLP  D+DL      
Sbjct: 248 FIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPE 307

Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL--VQNIVVDISFNQLG 164
           +       D+  +     + K A     + Q+I  A V ++K +  +  + VDISFNQ G
Sbjct: 308 HHYRGTKKDMFVLAHHLKKLKLAS----EVQVITTANVPIIKFVDPLTKVHVDISFNQPG 363

Query: 165 GLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFL 224
           GL T C +  V+  + K    +  +I+IK +    + +     G +S+YA+  LV+    
Sbjct: 364 GLKT-CLV--VNGFMKKYPALRPLVIIIKHFLNMRA-LNEVFLGGLSSYAIVCLVV---- 415

Query: 225 DYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGF 284
                       + L+  +   S+ E      E++ G LLL  EFL+   +QF   + G 
Sbjct: 416 ----------SFLQLHPRLSTGSMRE------EDNFGVLLL--EFLELYGKQFYYDAVGI 457

Query: 285 DTNSRSF-------------PPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYG 327
             ++  F              P  L+I DP+   N++ +S S+G   R+++ F  G
Sbjct: 458 AVHNGGFYFSKKKMGWLKPNQPYLLSIQDPVDFQNDVSKS-SRG-LLRVKATFANG 511
Required for 3' polyadenylation of the 5.8S and 25S rRNAs as a prelude ot their degradation in the exosome. Involved in the nucleolar organization to ensure faithful chromosome segregation during mitosis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query712
359481238 884 PREDICTED: uncharacterized protein LOC10 0.973 0.783 0.582 0.0
449449962 898 PREDICTED: uncharacterized protein LOC10 0.981 0.778 0.590 0.0
297735556 824 unnamed protein product [Vitis vinifera] 0.905 0.782 0.574 0.0
297816424 829 hypothetical protein ARALYDRAFT_485514 [ 0.887 0.762 0.573 0.0
79597803 829 NT domain of poly(A) polymerase and term 0.887 0.762 0.565 0.0
449526634 816 PREDICTED: uncharacterized LOC101207419 0.869 0.758 0.576 0.0
30693508755 NT domain of poly(A) polymerase and term 0.825 0.778 0.519 1e-172
6572083764 putative protein [Arabidopsis thaliana] 0.825 0.769 0.519 1e-171
359478494 854 PREDICTED: uncharacterized protein LOC10 0.948 0.790 0.501 1e-165
147817122 1147 hypothetical protein VITISV_017634 [Viti 0.730 0.453 0.536 1e-156
>gi|359481238|ref|XP_002266958.2| PREDICTED: uncharacterized protein LOC100258499 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/747 (58%), Positives = 514/747 (68%), Gaps = 54/747 (7%)

Query: 1   MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSE 60
           MGDLR  SPEP G    +R     S    N  AIGA  W RAE   Q II +VQPT VSE
Sbjct: 1   MGDLRACSPEPRGLFTDDRLLPLPSLSHPNPPAIGAAQWARAENTVQEIICEVQPTEVSE 60

Query: 61  ERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSV 120
           ERRK V+DYVQ LIR  +GCEVFPFGSVPLKTYLPDGDIDLTAFGG  VE+ LA +V SV
Sbjct: 61  ERRKEVVDYVQGLIRVRVGCEVFPFGSVPLKTYLPDGDIDLTAFGGPAVEDTLAYEVYSV 120

Query: 121 LEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIG 180
           LE EDQN+AAEFVVKD QLI AEVKLVKCLVQNIVVDISFNQLGGL TLCFLEQ+DRLIG
Sbjct: 121 LEAEDQNRAAEFVVKDVQLIHAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEQIDRLIG 180

Query: 181 KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETL-----------------VLYKF 223
           KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETL                 VLYKF
Sbjct: 181 KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFLLFHSLLNGPLAVLYKF 240

Query: 224 LDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRG 283
           LDYFSKFDWD+YC+SLNGPVRISSLPE++ ETPEN G D LL+++ L++C+++FSVPSRG
Sbjct: 241 LDYFSKFDWDNYCVSLNGPVRISSLPEMIAETPENVGADPLLNNDILRDCLDRFSVPSRG 300

Query: 284 FDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLT 343
            +TNSR+F  KH NIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLG IL QPE+ ++
Sbjct: 301 LETNSRTFVQKHFNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGRILLQPEDKIS 360

Query: 344 DELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSS 403
           +EL KFF+NTL+RHG GQRPDV D +P+S  +GFG +S+ S  E   E + +  +  +S 
Sbjct: 361 EELCKFFTNTLERHGRGQRPDV-DLIPVSCSDGFGFASSISDLEFQEEKRILEVNYTDSR 419

Query: 404 GITENCRIDDEAELCGGVGKIKVSGMESSYCR------------TINEPHNSGNGTAVSE 451
            IT    +D E  +C GV  +K+SG E                  ++E  NS N  AVS 
Sbjct: 420 SITGESELDAERSMCDGVNCVKISGTELGMSNPQRGSKQVVPTSMLSEADNSSNAPAVSG 479

Query: 452 TRLSGDAKDLATSKNLNLVISNETSKCSSLSGEES------KARHAPHLYFSSSTMGNGE 505
            R+SGDAKDLA+ +     ISN+TSK S  SGEES      KA  APHLYFS S   NG+
Sbjct: 480 FRISGDAKDLASPRIRGPKISNDTSKSSPPSGEESVSVLSKKAHFAPHLYFSRSAQ-NGK 538

Query: 506 IRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNH 565
            RN N + K   NSG +E            +E+  ++ +G + NQ   NH   +   SN 
Sbjct: 539 ERNENLDKKLAGNSGLSE------------EESSFVVHHGLNGNQSVNNHELLNSFVSND 586

Query: 566 HPSLMSTIPWSTEEFNFSYSGYHASPRT--VGSPRAANSLSDLSGDYESHQISLNHVWWW 623
            P  +S    S+E   + ++G    P +   G+P A NSL+DLSGDY+SH  SL + WW 
Sbjct: 587 VPPGLSPTACSSE---YLHTGNWDRPSSGNSGNPEAPNSLADLSGDYDSHFNSLQYGWWC 643

Query: 624 YEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPP 683
           Y++   +    M   L SQFQS NSWD +Q+S   RRNI PQ++ANG +PRP FYP+ PP
Sbjct: 644 YDYIFGAPALSMPVALPSQFQSNNSWDAIQQSAHIRRNIFPQITANGIIPRPPFYPLNPP 703

Query: 684 MLPGASFGMEEMPKHRGTGTYFPNTVY 710
           M+ G  FG+EEMPK RGTGTYFPNT +
Sbjct: 704 MISGTGFGVEEMPKPRGTGTYFPNTSH 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449449962|ref|XP_004142733.1| PREDICTED: uncharacterized protein LOC101207419 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297735556|emb|CBI18050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297816424|ref|XP_002876095.1| hypothetical protein ARALYDRAFT_485514 [Arabidopsis lyrata subsp. lyrata] gi|297321933|gb|EFH52354.1| hypothetical protein ARALYDRAFT_485514 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79597803|ref|NP_850678.2| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] gi|332645293|gb|AEE78814.1| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449526634|ref|XP_004170318.1| PREDICTED: uncharacterized LOC101207419 [Cucumis sativus] Back     alignment and taxonomy information
>gi|30693508|ref|NP_190730.2| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] gi|332645292|gb|AEE78813.1| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6572083|emb|CAB63026.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359478494|ref|XP_002276607.2| PREDICTED: uncharacterized protein LOC100253523 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147817122|emb|CAN62161.1| hypothetical protein VITISV_017634 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query712
TAIR|locus:2081885 829 AT3G51620 "AT3G51620" [Arabido 0.463 0.398 0.536 5.9e-118
TAIR|locus:2078426603 AT3G56320 [Arabidopsis thalian 0.467 0.552 0.512 4.3e-94
TAIR|locus:2061868502 AT2G40520 "AT2G40520" [Arabido 0.470 0.667 0.457 3.5e-78
TAIR|locus:2076795 1303 AT3G61690 [Arabidopsis thalian 0.321 0.175 0.575 5.3e-71
TAIR|locus:2063937511 HESO1 "HEN1 suppressor 1" [Ara 0.242 0.338 0.259 3e-06
SGD|S000005243642 TRF5 "Non-canonical poly(A) po 0.603 0.669 0.209 9.1e-05
POMBASE|SPAC12G12.13c684 cid14 "poly(A) polymerase Cid1 0.231 0.241 0.283 0.00013
POMBASE|SPCC663.12336 cid12 "poly(A) polymerase Cid1 0.355 0.752 0.255 0.00018
TAIR|locus:2081885 AT3G51620 "AT3G51620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 823 (294.8 bits), Expect = 5.9e-118, Sum P(2) = 5.9e-118
 Identities = 189/352 (53%), Positives = 228/352 (64%)

Query:   170 CFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYKFLDYFSK 229
             C+ E   R++G  H       LI  +   E+ +L   H   S+      VLYKFLDYFSK
Sbjct:   191 CYYES--RILGAFHG------LISTYAL-ETLVLYIFHLFHSSLNGPLAVLYKFLDYFSK 241

Query:   230 FDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR 289
             FDWDSYCISLNGPV +SSLP++VVETPEN G DLLL+SEFLKEC+E +SVPSRGF+TN R
Sbjct:   242 FDWDSYCISLNGPVCLSSLPDIVVETPENGGEDLLLTSEFLKECLEMYSVPSRGFETNPR 301

Query:   290 SFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKF 349
              F  KHLNIVDPLKE NNLGRSVSKGNFYRIRSAFTYGARKLG +  Q +E+++ ELRKF
Sbjct:   302 GFQSKHLNIVDPLKETNNLGRSVSKGNFYRIRSAFTYGARKLGQLFLQSDEAISSELRKF 361

Query:   350 FSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSS-GITEN 408
             FSN L RHGSGQRPDV D +P  RYN +  ++    +   +E Q + ESE +SS G T N
Sbjct:   362 FSNMLLRHGSGQRPDVHDAIPFLRYNRY--NAILPASNHFQEGQVVNESESSSSSGATGN 419

Query:   409 CRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLN 468
              R D E  L  GV     +G + S       P  +    +VSE R SGDAKDLAT +   
Sbjct:   420 GRHDQEDSLDAGVSIPSTTGPDLS-----GSPGETV--PSVSEERFSGDAKDLATLRIQK 472

Query:   469 LVISNETSKCSSLSGEESKAR-HAPHLYFSSSTMGNGEIRNGNSEWKQQLNS 519
             L IS++  K   LS +ES +  +  H  F+   M NGE+ NGN   KQQ NS
Sbjct:   473 LEISDDAMKSPCLSDKESDSPLNGKHHSFNQ--MRNGEVLNGNGVGKQQENS 522
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2078426 AT3G56320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061868 AT2G40520 "AT2G40520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076795 AT3G61690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063937 HESO1 "HEN1 suppressor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000005243 TRF5 "Non-canonical poly(A) polymerase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAC12G12.13c cid14 "poly(A) polymerase Cid14" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPCC663.12 cid12 "poly(A) polymerase Cid12" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.5__1506__AT3G51620.2
annotation not avaliable (829 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 9e-14
COG5260482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 1e-07
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 0.004
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information 
 Score = 67.6 bits (166), Expect = 9e-14
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 11/110 (10%)

Query: 62  RRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALA--NDVC 118
           +R+ V+D +Q LI+  + G +++PFGS      LP  DIDL   G  +  +       + 
Sbjct: 1   KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLA 60

Query: 119 SVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGL 166
            +L++         VV+   +I A V ++K + +   I VDISFN L G+
Sbjct: 61  KLLKKS------GEVVEVEPIINARVPIIKFVDKPTGIEVDISFNNLNGI 104

Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Length = 114
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 712
KOG1906514 consensus DNA polymerase sigma [Replication, recom 100.0
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
PTZ00418593 Poly(A) polymerase; Provisional 99.97
KOG2245562 consensus Poly(A) polymerase and related nucleotid 99.95
KOG2277596 consensus S-M checkpoint control protein CID1 and 99.83
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.83
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.82
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.76
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.75
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.75
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.68
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 98.23
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 97.86
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.79
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.67
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.59
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.4
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 97.38
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 97.26
COG166997 Predicted nucleotidyltransferases [General functio 96.41
COG1708128 Predicted nucleotidyltransferases [General functio 95.99
PRK13746262 aminoglycoside resistance protein; Provisional 95.91
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 95.04
KOG3793362 consensus Transcription factor NFAT, subunit NF45 94.17
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 93.6
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 93.15
PF14091152 DUF4269: Domain of unknown function (DUF4269) 92.19
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 90.33
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 89.46
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 88.67
PF10620213 MdcG: Phosphoribosyl-dephospho-CoA transferase Mdc 81.36
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-39  Score=360.79  Aligned_cols=253  Identities=33%  Similarity=0.553  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeeccccCCCCCCCCceEEeecC-CcchhHHHHHH
Q 005149           40 QRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGG-LNVEEALANDV  117 (712)
Q Consensus        40 ~~le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~-~~~~e~l~~~V  117 (712)
                      ..++++|.+|+++|.||.+|.+.|..+++.++++|+ +||+|.|++|||+.||||||+|||||+|+.. ...++.....+
T Consensus        61 ~~l~~eI~~fv~~l~pt~~e~~~R~~~~~~i~~~v~~~~~~a~v~~FGS~~tglyLP~sDIDl~v~~~~~~~~e~~~~~~  140 (514)
T KOG1906|consen   61 ERLRNEILDFVQYLIPTPEEIEVRSELVEKIRDVVKQKWPDASVYVFGSVPTGLYLPDSDIDLVVLSKFLNDKEDRAVKL  140 (514)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcccceeEEeeeeeccccccccceEEEEecccccCchhhHHHH
Confidence            346789999999999999999999999999999999 7999999999999999999999999999998 45556666555


Q ss_pred             HHHHHHHhhccccccceeeeEEE-EeeeeeEEEee--cCeeEEeeeccCCcchhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005149          118 CSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKA  194 (712)
Q Consensus       118 ~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~--~gI~VDISfNn~~Gl~~s~fLe~Vd~~v~~~p~fr~LvlLIK~  194 (712)
                      ..+++..+.  ...   ..|.+| .||||||||++  .+|.||||||+.+|++++.|+   ..++.++|.+++|++++|+
T Consensus       141 ~l~~~~e~~--~~~---~~v~~v~karvpiik~~d~~s~i~vDISFn~~~G~~aa~~i---~~~~~~~p~~~~lvlvlk~  212 (514)
T KOG1906|consen  141 ELALELEED--NSA---FHVKVVQKARVPIIKFKDPVSNIHVDISFNQTNGVKAAKFI---KDFLRDHPFLRSLVLVLKQ  212 (514)
T ss_pred             HHHHhhhhc--ccc---ceEEEeeeeeeeeEEeecCccceEEEeeecccCchhHHHHH---HHHHhcCccchhHHHHHHH
Confidence            544444321  112   357788 99999999997  499999999999999999885   5668888999999999999


Q ss_pred             HHHHhhCccCCCCCCCcHHHHHHHH------------------------HHHHHhhhc-CCCCCCceeeccCCcccCCCC
Q 005149          195 WCYYESRILGAHHGLISTYALETLV------------------------LYKFLDYFS-KFDWDSYCISLNGPVRISSLP  249 (712)
Q Consensus       195 Wa~yesRil~a~~GgLSSYaL~lMV------------------------L~~FL~yYs-kFD~~~~~ISi~GpVplssLp  249 (712)
                      |++ +++++++++|||+||+|++||                        |..||++|+ +|.++..+|++..+..     
T Consensus       213 fl~-~r~ln~v~tGgisSyal~~Lv~~fl~l~~~~~s~~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~g~-----  286 (514)
T KOG1906|consen  213 FLY-ERRLNGVHTGGISSYALELLVLSFLQLHPRSKSGRLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLGGE-----  286 (514)
T ss_pred             HHH-hhcccccccccchHHHHHHHHHHHHhhcccccCCccchhcccchHHHHHHHHhccccCchhhceeccCCcc-----
Confidence            985 788999999999999999999                        345666665 4665555554442210     


Q ss_pred             cccccCCCCCCCcccccHHHHHHHHhhcCCCCCCCCCCCCCCCCCCeEEcCCCCCCCCcCCCCCHHHHHHHHHHHHHHHH
Q 005149          250 EVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGAR  329 (712)
Q Consensus       250 ~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~rG~~~~~r~f~~~~L~IeDPfdpsNNLGRSVsk~nf~rIR~AF~~aa~  329 (712)
                                   .+ .++-            .++..+ .......++||||.+|.||+||+.+  ++..|+.+|.+|+.
T Consensus       287 -------------~~-~~~~------------~~~~~~-~~~~~~~LsieDP~~P~ndigr~s~--~~~~v~~~F~~af~  337 (514)
T KOG1906|consen  287 -------------YV-SKEL------------TGFFNN-SLERPGSLSIEDPVDPTNDIGRSSF--NFSQVKGAFAYAFK  337 (514)
T ss_pred             -------------cc-cHHh------------hhhhcc-cccCCCccccCCCCCcccccccccc--cHHHHHHHHHHHHH
Confidence                         00 0000            011111 0122456999999999999999987  89999999999999


Q ss_pred             HHHhhh
Q 005149          330 KLGHIL  335 (712)
Q Consensus       330 ~L~~il  335 (712)
                      .|....
T Consensus       338 ~l~~~~  343 (514)
T KOG1906|consen  338 VLTNAV  343 (514)
T ss_pred             HHhhhh
Confidence            987754

>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-31
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 3e-28
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 3e-27
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 4e-27
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 5e-26
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 2e-21
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 7e-20
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 1e-17
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
 Score =  124 bits (312), Expect = 2e-31
 Identities = 50/326 (15%), Positives = 101/326 (30%), Gaps = 66/326 (20%)

Query: 49  IIAQVQPTVVSEERRKAVIDYVQRLIRNYL-GCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
            +A + P+    E R   I  ++  ++      ++  FGS     YLP  DID      L
Sbjct: 28  FVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSEL 87

Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLS 167
             +E  + +    L    + K     V+     R  +         I + +SF +  G+ 
Sbjct: 88  GGKE--SRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIE 145

Query: 168 TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLV-------- 219
               + +    +      +  ++++K + +   R+   H G +  +++  LV        
Sbjct: 146 AAKLIRE---WLDDTPGLRELVLIVKQFLHAR-RLNNVHTGGLGGFSIICLVFSFLHMHP 201

Query: 220 ----------------LYKFLDYFSK-FDWDSYCISLNGPVRISSLPEVVVETPENSGGD 262
                           L +F + + K F +D   +  +    +                 
Sbjct: 202 RIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVY---------------- 245

Query: 263 LLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRS 322
                         F   +       ++  P  L I DP  E+NN+ R     N   I+ 
Sbjct: 246 --------------FPKSTWSAIQPIKN--PFSLAIQDPGDESNNISRGSF--NIRDIKK 287

Query: 323 AFTYGARKLGHILSQPEESLTDELRK 348
           AF      L +   +   +   +   
Sbjct: 288 AFAGAFDLLTNRCFELHSATFKDRLG 313
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query712
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.63
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.35
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 97.78
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.59
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.42
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.41
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 96.58
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 95.89
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 95.15
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 94.84
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 89.24
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-46  Score=395.42  Aligned_cols=259  Identities=21%  Similarity=0.330  Sum_probs=198.6

Q ss_pred             hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCceEEeeccccCCCCCCCCceEEeecCCcchh-HHHH
Q 005149           38 YWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE-ALAN  115 (712)
Q Consensus        38 ~w~~le~ei~e~v~~I~PT~eE~~~R~~VI~~Vq~lI~-~~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~~e-~l~~  115 (712)
                      .+..++..+.+++++++||++|.++|+++++.|+++|+ .||+|+|++|||+++|+++|+||||+||..+..... .+..
T Consensus        12 ~~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~   91 (349)
T 4fh3_A           12 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIAL   91 (349)
T ss_dssp             CCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHH
Confidence            44567777888899999999999999999999999999 589999999999999999999999999998875533 3332


Q ss_pred             HHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEeec-------CeeEEeeeccCCcchhhHHHHHHHHHhCCChhhHH
Q 005149          116 DVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ-------NIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKR  187 (712)
Q Consensus       116 ~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~~-------gI~VDISfNn~~Gl~~s~fLe~Vd~~v~~~p~fr~  187 (712)
                      ++...+.+       .  ..+++.| +||||||||+++       ++.|||||++.+|+.++.++   ..++..+|+||+
T Consensus        92 ~~~~~~~~-------~--~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll---~~~~~~~~~~r~  159 (349)
T 4fh3_A           92 QFYEELIA-------E--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLL---SSYTKLDARLKP  159 (349)
T ss_dssp             HHHHHHHH-------T--TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHH---HHHHHHCTTHHH
T ss_pred             HHHHHHHh-------h--cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHH---HHHhhcCHHHHH
Confidence            33222221       1  1356667 999999999974       68999999999999999986   466778999999


Q ss_pred             HHHHHHHHHHHhhCccCCCCCCCcHHHHHHHHH-----------------------------------------------
Q 005149          188 SIILIKAWCYYESRILGAHHGLISTYALETLVL-----------------------------------------------  220 (712)
Q Consensus       188 LvlLIK~Wa~yesRil~a~~GgLSSYaL~lMVL-----------------------------------------------  220 (712)
                      |+++||+||+ .+++++++.||||||+|++||+                                               
T Consensus       160 l~~~iK~wak-~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~  238 (349)
T 4fh3_A          160 MVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYS  238 (349)
T ss_dssp             HHHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCC
T ss_pred             HHHHHHHHHH-HcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcccccCcc
Confidence            9999999997 5667799999999999999983                                               


Q ss_pred             ------HHHHhhhc-CCCCCCceeeccCCcccCCCCcccccCCCCCCCcccccHHHHHHHHhhcCCCCCCC-CCCCCCCC
Q 005149          221 ------YKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGF-DTNSRSFP  292 (712)
Q Consensus       221 ------~~FL~yYs-kFD~~~~~ISi~GpVplssLp~~~~e~pe~~~g~lLL~~efLr~~~~~fs~~~rG~-~~~~r~f~  292 (712)
                            ++||+||+ +|||++.+||++++...                   +.++..     .+......+ ........
T Consensus       239 slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~-------------------~~k~~k-----~~~~~~~~~~~~~~~~~~  294 (349)
T 4fh3_A          239 SLGSLLHGFFRFYAYKFEPREKVVTFRRPDGY-------------------LTKQEK-----GWTSATEHTGSADQIIKD  294 (349)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCC-------------------CBHHHH-----TCC---------------
T ss_pred             cHHHHHHHHHHHhhhccCCCCceEEecCCCCc-------------------cchHHh-----cccccccccCcccccCCC
Confidence                  45778886 58888888887643210                   001100     000000000 00011122


Q ss_pred             CCCeEEcCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHh
Q 005149          293 PKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGH  333 (712)
Q Consensus       293 ~~~L~IeDPfdpsNNLGRSVsk~nf~rIR~AF~~aa~~L~~  333 (712)
                      .+.|||||||+++||+||+|+..++.+||.||++|++.|.+
T Consensus       295 ~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~  335 (349)
T 4fh3_A          295 RYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNS  335 (349)
T ss_dssp             CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999999999999999976
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 712
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 3e-19
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 8e-15
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 9e-13
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.2 bits (208), Expect = 3e-19
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 26/155 (16%)

Query: 55  PTVVSEERRKAVIDYVQRLIRNY-----------------LGCEVFPFGSVPLKTYLPDG 97
            T      R  V+  +Q L + +                  G ++F +GS  L  + P  
Sbjct: 36  ETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGS 95

Query: 98  DIDLTAFGGLNVE-EALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVV 156
           DID       +V  E       S+L    +      + + A +  A V ++K     I +
Sbjct: 96  DIDTLVVVPKHVTREDFFTVFDSLLRERKE------LDEIAPVPDAFVPIIKIKFSGISI 149

Query: 157 DISFNQLGGLSTLCFLEQVDR--LIGKDHLFKRSI 189
            +   +L        L   D+  L   D    R++
Sbjct: 150 ALICARLDQPQVPLSLTLSDKNLLRNLDEKDLRAL 184
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query712
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.84
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.83
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.83
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.37
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.35
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.79
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.22
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.78
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 97.73
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 97.72
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.39
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 96.43
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 96.23
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 96.17
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 83.46
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.8e-21  Score=189.28  Aligned_cols=108  Identities=21%  Similarity=0.253  Sum_probs=93.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhh-----------------cCCceEEeeccccCCCCCCCCceEEeecCCcc-hhHHH
Q 005149           53 VQPTVVSEERRKAVIDYVQRLIRNY-----------------LGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-EEALA  114 (712)
Q Consensus        53 I~PT~eE~~~R~~VI~~Vq~lI~~~-----------------p~a~V~~FGS~~tGL~LP~SDIDL~V~~~~~~-~e~l~  114 (712)
                      +-||++|.++|++++++|+++++.|                 .+++|++||||.+|+|+|+||||++|+++... .++++
T Consensus        34 ~~~s~ee~~~R~~vl~~l~~iv~~~v~~~~~~~~~~~~~~~~~~~~v~~fGS~~lg~~~p~SDID~~~~~p~~~~~~~ff  113 (197)
T d2q66a2          34 SFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFF  113 (197)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCcEEEecccccccccCCCCCcceEEecCCcCCHHHHH
Confidence            5599999999999999999999875                 37899999999999999999999999998655 45777


Q ss_pred             HHHHHHHHHHhhccccccceeeeEEE-EeeeeeEEEeecCeeEEeeeccCCcch
Q 005149          115 NDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGGLS  167 (712)
Q Consensus       115 ~~V~~iL~~~~~~~~a~f~V~~V~vI-~ArVPIIK~~~~gI~VDISfNn~~Gl~  167 (712)
                      ..+..+|++.       ..+++++.| +|+||||||..+||.|||+|+++....
T Consensus       114 ~~l~~~L~~~-------~~v~~i~~I~~A~VPIIK~~~~gi~iDlsfa~l~~~~  160 (197)
T d2q66a2         114 TVFDSLLRER-------KELDEIAPVPDAFVPIIKIKFSGISIALICARLDQPQ  160 (197)
T ss_dssp             HHHHHHHHTC-------TTEEEEEEECSSSSCEEEEEETTEEEEEEEEECSSSC
T ss_pred             HHHHHHHHhC-------CCCceeEEeecccccEEEEEEcCEEEEeecccccCCC
Confidence            7777777652       246889999 999999999999999999999876544
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure