Citrus Sinensis ID: 005153

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-
MSGENQGGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
cccccccccEEEcccccccccEEEccccccccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHEEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcc
ccccccccEEEEcccccccccEEEccccccccccEEEEEEccccEEEEEEEcccccccccccccEEEEEEEccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHcHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccEccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcc
msgenqggaivpyseeakkpvvyplrhglkppisrlgiswsrgnsLRVTVfrqpsedsenevggkAVEVRldgrdgeisdAQWRRIaygsvspfallQSRKNSFASLSkissttspfdAEWWEYVLEYSKDISsllgnqtsttqsliedpkevlkkdpepsnlKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHgsyqldqlgnretENGLVEAVAVLISkmprmrpeleagklgecfkaKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECskgfgpwmVTHAIEVLTagshqadtLLHEerdnlggismEELHRLVYAQVLsshpltwqiaPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEIcrlyeldsvsSNIMKIAGMynwkhgkkgsgVYWLQQARDEARLNRIAQQMFDSvgrsisdeNFRQWEGLIQLLgsepktaggleFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISlmknpctpqrfwlplLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIArlrpdfieadlpphalSSVRLALATNlgrttleeq
msgenqggaivpyseeakKPVVYPLRHglkppisrlgiswsrgnSLRVTVfrqpsedsenevggkavevrldgrdgeiSDAQWRRIAYGSVSPFALLQSRKNSFASLskissttspfdAEWWEYVLEYSKDISSLLGNQTSttqsliedpkevlkkdpepSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQldqlgnretenGLVEAVAVLIskmprmrpeleagklgecfkAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATnlgrttleeq
MSGENQGGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPllnvlqtnlllnklqelSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
*******************PVVYPLRHGLKPPISRLGISWSRGNSLRVTVF**************************ISDAQWRRIAYGSVSPFALLQS**************TSPFDAEWWEYVLEYSKDISSLL***************************KAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALAT**********
******G***VPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVT******************EVRLDGRDGEISDAQWRRIAYGSVSPFALLQSR*******************EWWEYVLEYSKDISSLLGNQTS*************KKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSST*********************EDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQL*********NGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTL***********SMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRD****DAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELS***************HALSSVRLALATNLGRTTLE**
********AIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFR**********GGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
******GGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLS**SSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
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MSGENQGGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query711 2.2.26 [Sep-21-2011]
Q8RXH2716 Nuclear pore complex prot yes no 0.998 0.991 0.695 0.0
Q8R480656 Nuclear pore complex prot yes no 0.534 0.579 0.272 1e-22
Q9BW27656 Nuclear pore complex prot yes no 0.528 0.573 0.274 1e-22
Q6DBY0649 Nuclear pore complex prot yes no 0.624 0.684 0.244 1e-22
Q4QQS8656 Nuclear pore complex prot yes no 0.534 0.579 0.269 2e-22
Q3ZC98656 Nuclear pore complex prot yes no 0.864 0.937 0.224 2e-21
Q6DK84653 Nuclear pore complex prot yes no 0.864 0.941 0.227 3e-16
Q68FJ0653 Nuclear pore complex prot N/A no 0.866 0.943 0.223 4e-15
Q54NA0890 Nuclear pore complex prot no no 0.642 0.513 0.179 1e-05
>sp|Q8RXH2|NUP85_ARATH Nuclear pore complex protein Nup85 OS=Arabidopsis thaliana GN=NUP85 PE=2 SV=1 Back     alignment and function desciption
 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/712 (69%), Positives = 593/712 (83%), Gaps = 2/712 (0%)

Query: 1   MSGENQGGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQPS--EDS 58
           MS E+ GG +V +S + K PV+YPL +GLK P+ RL ISW  GN+LRVTV R P   +D 
Sbjct: 4   MSSESGGGELVLFSTKEKTPVLYPLSYGLKSPVHRLSISWGCGNNLRVTVLRNPELRDDD 63

Query: 59  ENEVGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFD 118
           + EVGGK V VRL G DGEISD QWRRIAYGSVSPFALLQSR+NS +SLSK+  ++S + 
Sbjct: 64  DGEVGGKVVNVRLSGEDGEISDPQWRRIAYGSVSPFALLQSRRNSISSLSKMDMSSSLYQ 123

Query: 119 AEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKL 178
             WWEYV+EYS+DI SLL N  S    LIEDP+ V+K   EP++LKAAWELME FYADK 
Sbjct: 124 TAWWEYVMEYSRDIKSLLSNTISLPAPLIEDPRSVIKNAEEPTSLKAAWELMELFYADKT 183

Query: 179 SQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAV 238
             +WLPERLVDWL++YD L SS+  T++SKL DFQK+LV LQ IED+P+YWEVM+SAL+V
Sbjct: 184 CLSWLPERLVDWLSEYDILLSSSHPTIYSKLQDFQKELVGLQAIEDDPRYWEVMASALSV 243

Query: 239 GWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAK 298
           GWL+IVVKLL LHGSYQLDQLG+RETENGLVEAVAVLISKMPRMRP+LE GK GEC  AK
Sbjct: 244 GWLEIVVKLLHLHGSYQLDQLGHRETENGLVEAVAVLISKMPRMRPQLEDGKFGECSAAK 303

Query: 299 PDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELY 358
           PDFMK  E+W++QI KLECS FW+QCAH QT+EGLRNML+IM+GN + L   TC+WMEL+
Sbjct: 304 PDFMKTRERWQSQITKLECSAFWVQCAHHQTREGLRNMLKIMIGNADCLRAATCNWMELF 363

Query: 359 IAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 418
           ++H LY+RPFT GL+ M+ LAQKC+Q KP+  SH+L+ LLIGILGEN EVVLAECSK FG
Sbjct: 364 VSHLLYLRPFTKGLDGMHSLAQKCVQSKPVNTSHKLLRLLIGILGENTEVVLAECSKEFG 423

Query: 419 PWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYL 478
            WMV HA+E+LTAGS + + L+HEE+  LGGI+MEELHRLVYAQVLSSH LTWQIAPIYL
Sbjct: 424 SWMVAHAMELLTAGSEEGEVLVHEEQRKLGGINMEELHRLVYAQVLSSHALTWQIAPIYL 483

Query: 479 TSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKG 538
            SC KQG+GLLE+L Y+QPV  NQ+L+K+LEICRLYEL +VS+ +MKI+G+++WKHG+KG
Sbjct: 484 ASCEKQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVSAKLMKISGVHHWKHGRKG 543

Query: 539 SGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHN 598
           SG++WLQQARDE  L+ IAQQ+FDSVG+S+SDE+ +QWEGL++LLGSE + +GGL+FLH 
Sbjct: 544 SGIFWLQQARDENCLSVIAQQLFDSVGKSLSDESLKQWEGLVELLGSESQISGGLDFLHK 603

Query: 599 YRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLL 658
           YRDFK+SL  + DGKT DAA +AVE L+SLMK+P TPQRFWLPLLHDSLKLLNW ER LL
Sbjct: 604 YRDFKRSLKVVHDGKTIDAAHEAVERLVSLMKSPSTPQRFWLPLLHDSLKLLNWPERSLL 663

Query: 659 NVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEE 710
           NV QTNL+LNKLQELSIARLRP FIE++L   A+ SVRLALATNLGR  LEE
Sbjct: 664 NVTQTNLMLNKLQELSIARLRPGFIESELSAQAVGSVRLALATNLGRAFLEE 715
Functions as component of the nuclear pore complex (NPC).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8R480|NUP85_MOUSE Nuclear pore complex protein Nup85 OS=Mus musculus GN=Nup85 PE=1 SV=1 Back     alignment and function description
>sp|Q9BW27|NUP85_HUMAN Nuclear pore complex protein Nup85 OS=Homo sapiens GN=NUP85 PE=1 SV=1 Back     alignment and function description
>sp|Q6DBY0|NUP85_DANRE Nuclear pore complex protein Nup85 OS=Danio rerio GN=nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q4QQS8|NUP85_RAT Nuclear pore complex protein Nup85 OS=Rattus norvegicus GN=Nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZC98|NUP85_BOVIN Nuclear pore complex protein Nup85 OS=Bos taurus GN=NUP85 PE=2 SV=1 Back     alignment and function description
>sp|Q6DK84|NUP85_XENTR Nuclear pore complex protein Nup85 OS=Xenopus tropicalis GN=nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q68FJ0|NUP85_XENLA Nuclear pore complex protein Nup85 OS=Xenopus laevis GN=nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q54NA0|NUP85_DICDI Nuclear pore complex protein nup85 OS=Dictyostelium discoideum GN=nup85 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query711
225429930715 PREDICTED: nuclear pore complex protein 0.992 0.987 0.788 0.0
255550916725 conserved hypothetical protein [Ricinus 0.987 0.968 0.754 0.0
224141733720 predicted protein [Populus trichocarpa] 0.988 0.976 0.731 0.0
123720792711 nucleoporin [Lotus japonicus] 0.984 0.984 0.713 0.0
356563751698 PREDICTED: nuclear pore complex protein 0.969 0.987 0.707 0.0
13605599713 AT4g32910/F26P21_30 [Arabidopsis thalian 0.998 0.995 0.695 0.0
18418112716 uncharacterized protein [Arabidopsis tha 0.998 0.991 0.695 0.0
449461321720 PREDICTED: nuclear pore complex protein 0.994 0.981 0.684 0.0
297802704716 hypothetical protein ARALYDRAFT_491404 [ 0.998 0.991 0.682 0.0
357136399730 PREDICTED: nuclear pore complex protein 0.991 0.965 0.619 0.0
>gi|225429930|ref|XP_002283798.1| PREDICTED: nuclear pore complex protein Nup85 [Vitis vinifera] gi|296081842|emb|CBI20847.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1176 bits (3043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/709 (78%), Positives = 637/709 (89%), Gaps = 3/709 (0%)

Query: 5   NQGGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQ-PSE--DSENE 61
           + G A+VP S EA   VVYPL HGLKPPISRL ISWSRGN+LRV+VFR+ P+E  DS+ E
Sbjct: 7   DSGNALVPLSPEAHVSVVYPLHHGLKPPISRLSISWSRGNALRVSVFRELPAESSDSDGE 66

Query: 62  VGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEW 121
            GGK V+V+L   DGE+ DAQWRRIAYGSVSPFALLQSR+NS  +LSK+S ++SP+  +W
Sbjct: 67  AGGKVVQVKLGVADGEVDDAQWRRIAYGSVSPFALLQSRRNSVLALSKMSMSSSPYHPDW 126

Query: 122 WEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQA 181
           WEYV+EYSKDISSLL N  S   S+I+DPK VLKK  EP+ LKAAW L+E FYADK SQA
Sbjct: 127 WEYVMEYSKDISSLLDNAKSLPNSMIDDPKTVLKKVEEPTCLKAAWGLLEIFYADKESQA 186

Query: 182 WLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWL 241
           WLPER+VDWLADYD LFS TQ TVHSKLV+FQK++V LQVIED+P+YWEV++SALAVGWL
Sbjct: 187 WLPERIVDWLADYDVLFSGTQATVHSKLVEFQKEIVRLQVIEDDPRYWEVITSALAVGWL 246

Query: 242 DIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDF 301
           +IVVKLLRLHGSYQLDQL NRETENGLVEAVA+LISKMPRMRPELEAG+LGECFK KPDF
Sbjct: 247 EIVVKLLRLHGSYQLDQLSNRETENGLVEAVAILISKMPRMRPELEAGRLGECFKTKPDF 306

Query: 302 MKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAH 361
           +KAWEKWRAQI KL+CS+FW+QC HRQT+EGLRNMLQ+MLGNTNNLCT TCHW+ELYI+H
Sbjct: 307 IKAWEKWRAQITKLDCSSFWVQCDHRQTREGLRNMLQLMLGNTNNLCTSTCHWIELYISH 366

Query: 362 FLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWM 421
           FLY+RPFTVGLESM+ LAQKCIQLKP+++SHRLMGL++GILGEN EVVLAECS+ FGPWM
Sbjct: 367 FLYVRPFTVGLESMHALAQKCIQLKPISSSHRLMGLIVGILGENTEVVLAECSRAFGPWM 426

Query: 422 VTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSC 481
           V HAIE+LTAGS QA+ +L E RDNLGGIS+EELHRL+YAQVLSSH LTWQIAPIYLTSC
Sbjct: 427 VAHAIELLTAGSDQAEIILQEGRDNLGGISIEELHRLIYAQVLSSHALTWQIAPIYLTSC 486

Query: 482 IKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGV 541
           +KQGMGLLE+LLYKQPV  NQ+LLK  EICRLY+L+S+SS+IMKIAG+Y+WKHG+KGSGV
Sbjct: 487 MKQGMGLLEVLLYKQPVQDNQMLLKTTEICRLYDLESISSSIMKIAGVYHWKHGRKGSGV 546

Query: 542 YWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRD 601
           +WLQQARDE RLNRIAQQ+FD VGRSISDE+F+QWEGLI+LLGSE K AGGL+FLH YRD
Sbjct: 547 FWLQQARDEFRLNRIAQQLFDFVGRSISDESFKQWEGLIELLGSESKIAGGLDFLHKYRD 606

Query: 602 FKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVL 661
           FKKSL Q++ GKTTDAA+QAVESLISLM+NP TPQRFWLPLLHDSLKLL+W+ERPLLN  
Sbjct: 607 FKKSLQQVQVGKTTDAAQQAVESLISLMRNPSTPQRFWLPLLHDSLKLLSWQERPLLNAN 666

Query: 662 QTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEE 710
           QTNLLLNKLQELS+ARLRPDFIEA+LPP ALSSVRLALATNLGR  LEE
Sbjct: 667 QTNLLLNKLQELSMARLRPDFIEANLPPQALSSVRLALATNLGRAILEE 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550916|ref|XP_002516506.1| conserved hypothetical protein [Ricinus communis] gi|223544326|gb|EEF45847.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224141733|ref|XP_002324219.1| predicted protein [Populus trichocarpa] gi|222865653|gb|EEF02784.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|123720792|dbj|BAF45348.1| nucleoporin [Lotus japonicus] Back     alignment and taxonomy information
>gi|356563751|ref|XP_003550123.1| PREDICTED: nuclear pore complex protein Nup85-like [Glycine max] Back     alignment and taxonomy information
>gi|13605599|gb|AAK32793.1|AF361625_1 AT4g32910/F26P21_30 [Arabidopsis thaliana] gi|25090220|gb|AAN72255.1| At4g32910/F26P21_30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418112|ref|NP_567908.1| uncharacterized protein [Arabidopsis thaliana] gi|75158853|sp|Q8RXH2.1|NUP85_ARATH RecName: Full=Nuclear pore complex protein Nup85; AltName: Full=Nucleoporin Nup85 gi|19698819|gb|AAL91145.1| putative protein [Arabidopsis thaliana] gi|332660742|gb|AEE86142.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449461321|ref|XP_004148390.1| PREDICTED: nuclear pore complex protein Nup85-like [Cucumis sativus] gi|449507257|ref|XP_004162978.1| PREDICTED: nuclear pore complex protein Nup85-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297802704|ref|XP_002869236.1| hypothetical protein ARALYDRAFT_491404 [Arabidopsis lyrata subsp. lyrata] gi|297315072|gb|EFH45495.1| hypothetical protein ARALYDRAFT_491404 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357136399|ref|XP_003569792.1| PREDICTED: nuclear pore complex protein Nup85-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query711
TAIR|locus:2123757716 AT4G32910 [Arabidopsis thalian 0.998 0.991 0.674 1.3e-267
UNIPROTKB|J3QL54544 NUP85 "Nuclear pore complex pr 0.611 0.799 0.256 2.1e-20
UNIPROTKB|B4DMQ3610 NUP85 "cDNA FLJ53138, highly s 0.611 0.713 0.256 4e-20
UNIPROTKB|Q9BW27656 NUP85 "Nuclear pore complex pr 0.611 0.663 0.256 5.7e-20
RGD|1311942656 Nup85 "nucleoporin 85" [Rattus 0.531 0.576 0.270 1e-19
MGI|MGI:3046173656 Nup85 "nucleoporin 85" [Mus mu 0.614 0.666 0.264 2.6e-19
UNIPROTKB|F1RVX6656 NUP85 "Uncharacterized protein 0.656 0.711 0.25 1.8e-18
UNIPROTKB|F1PFE9656 NUP85 "Uncharacterized protein 0.611 0.663 0.256 4.4e-18
UNIPROTKB|F1NRW5675 NUP85 "Uncharacterized protein 0.538 0.567 0.242 2.1e-17
UNIPROTKB|Q3ZC98656 NUP85 "Nuclear pore complex pr 0.655 0.710 0.239 2.8e-17
TAIR|locus:2123757 AT4G32910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2574 (911.2 bits), Expect = 1.3e-267, P = 1.3e-267
 Identities = 480/712 (67%), Positives = 577/712 (81%)

Query:     1 MSGENQGGAIVPYSEEAKKPVVYPLRHGLKPPISRLGISWSRGNSLRVTVFRQPS--EDS 58
             MS E+ GG +V +S + K PV+YPL +GLK P+ RL ISW  GN+LRVTV R P   +D 
Sbjct:     4 MSSESGGGELVLFSTKEKTPVLYPLSYGLKSPVHRLSISWGCGNNLRVTVLRNPELRDDD 63

Query:    59 ENEVGGKAVEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFD 118
             + EVGGK V VRL G DGEISD QWRRIAYGSVSPFALLQSR+NS +SLSK+  ++S + 
Sbjct:    64 DGEVGGKVVNVRLSGEDGEISDPQWRRIAYGSVSPFALLQSRRNSISSLSKMDMSSSLYQ 123

Query:   119 AEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKL 178
               WWEYV+EYS+DI SLL N  S    LIEDP+ V+K   EP++LKAAWELME FYADK 
Sbjct:   124 TAWWEYVMEYSRDIKSLLSNTISLPAPLIEDPRSVIKNAEEPTSLKAAWELMELFYADKT 183

Query:   179 SQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAV 238
               +WLPERLVDWL++YD L SS+  T++SKL DFQK+LV LQ IED+P+YWEVM+SAL+V
Sbjct:   184 CLSWLPERLVDWLSEYDILLSSSHPTIYSKLQDFQKELVGLQAIEDDPRYWEVMASALSV 243

Query:   239 GWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAK 298
             GWL+IVVKLL LHGSYQLDQLG+RETENGLVEAVAVLISKMPRMRP+LE GK GEC  AK
Sbjct:   244 GWLEIVVKLLHLHGSYQLDQLGHRETENGLVEAVAVLISKMPRMRPQLEDGKFGECSAAK 303

Query:   299 PDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELY 358
             PDFMK  E+W++QI KLECS FW+QCAH QT+EGLRNML+IM+GN + L   TC+WMEL+
Sbjct:   304 PDFMKTRERWQSQITKLECSAFWVQCAHHQTREGLRNMLKIMIGNADCLRAATCNWMELF 363

Query:   359 IAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 418
             ++H LY+RPFT GL+ M+ LAQKC+Q KP+  SH+L+ LLIGILGEN EVVLAECSK FG
Sbjct:   364 VSHLLYLRPFTKGLDGMHSLAQKCVQSKPVNTSHKLLRLLIGILGENTEVVLAECSKEFG 423

Query:   419 PWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYL 478
              WMV HA+E+LTAGS + + L+HEE+  LGGI+MEELHRLVYAQVLSSH LTWQIAPIYL
Sbjct:   424 SWMVAHAMELLTAGSEEGEVLVHEEQRKLGGINMEELHRLVYAQVLSSHALTWQIAPIYL 483

Query:   479 TSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKG 538
              SC KQG+GLLE+L Y+QPV  NQ+L+K+LEICRLYEL +VS+ +MKI+G+++WKHG+KG
Sbjct:   484 ASCEKQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVSAKLMKISGVHHWKHGRKG 543

Query:   539 SGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHN 598
             SG++WLQQARDE  L+ IAQQ+FDSVG+S+SDE+ +QWEGL++LLGSE + +GGL+FLH 
Sbjct:   544 SGIFWLQQARDENCLSVIAQQLFDSVGKSLSDESLKQWEGLVELLGSESQISGGLDFLHK 603

Query:   599 YRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPXX 658
             YRDFK+SL  + DGKT DAA +AVE L+SLMK+P TPQRFWLPLLHDSLKLLNW ER   
Sbjct:   604 YRDFKRSLKVVHDGKTIDAAHEAVERLVSLMKSPSTPQRFWLPLLHDSLKLLNWPERSLL 663

Query:   659 XXXXXXXXXXXXXXXSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEE 710
                            SIARLRP FIE++L   A+ SVRLALATNLGR  LEE
Sbjct:   664 NVTQTNLMLNKLQELSIARLRPGFIESELSAQAVGSVRLALATNLGRAFLEE 715
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
UNIPROTKB|J3QL54 NUP85 "Nuclear pore complex protein Nup85" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DMQ3 NUP85 "cDNA FLJ53138, highly similar to Homo sapiens pericentrin 1 (PCNT1), mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BW27 NUP85 "Nuclear pore complex protein Nup85" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311942 Nup85 "nucleoporin 85" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:3046173 Nup85 "nucleoporin 85" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVX6 NUP85 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFE9 NUP85 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRW5 NUP85 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZC98 NUP85 "Nuclear pore complex protein Nup85" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXH2NUP85_ARATHNo assigned EC number0.69520.99850.9916yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032420001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (715 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017136001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (357 aa)
    • • 0.632
GSVIVG00029138001
SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (1269 aa)
      • 0.444

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
pfam07575564 pfam07575, Nucleopor_Nup85, Nup85 Nucleoporin 1e-173
>gnl|CDD|219472 pfam07575, Nucleopor_Nup85, Nup85 Nucleoporin Back     alignment and domain information 
 Score =  506 bits (1304), Expect = e-173
 Identities = 182/609 (29%), Positives = 281/609 (46%), Gaps = 47/609 (7%)

Query: 67  VEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVL 126
           V V     D +I     RR+   S   FA LQS ++S A       +TS   AE  +   
Sbjct: 2   VLVYPVREDTDIDSPNLRRLVAESFEIFAGLQSLRSSDAPTIGPIKSTS---AEHVKISR 58

Query: 127 EYSKDISSLLGNQTSTTQSLIEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPER 186
            Y   I  LL    S    LIEDP+++ +     + L+A W L+E  Y +  S+  L E 
Sbjct: 59  AYRSVIRELLEFIESLKYPLIEDPRDLEESLSILNCLEAIWFLLEILYIESNSRGTLLES 118

Query: 187 LVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVK 246
           L+DW+   D   S    T         + L   + +E+ P YW+V++S +  G L+    
Sbjct: 119 LLDWVNRSDGEPSEEYIT---------EVLQQGKPVEETPDYWKVVASLVLRGLLEQARA 169

Query: 247 LLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWE 306
           LL  H S  L       +  G+VE    L+  MP   PE           +  DF   W 
Sbjct: 170 LLSEHSSLLLY------SSQGMVEDAIDLLKSMPVYSPE---------GLSLTDFESTWR 214

Query: 307 KWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIR 366
           +W++++ +L+  +  +Q    ++++GL ++L+I+ GN   +   +  W E  +   LY  
Sbjct: 215 EWKSEVLRLQ--SKKLQDGTFESRDGLEDLLKILAGNEEKILEYSSTWYEFLVGFLLYYI 272

Query: 367 PFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFG-PWMVTHA 425
           P    LE ++  AQ C+ + P+  ++ L  + + I+  +I  VL E S  F   W   H 
Sbjct: 273 PTCKPLELLHEYAQLCLSMFPVDVTNPLEQICLSIIENDIHNVLKELSSLFDDWWFAAHL 332

Query: 426 IEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQG 485
            ++L         L + E D+LG I+M E   L YA VL SH   WQ+A  YL  C  +G
Sbjct: 333 ADLL----EHKGLLENSENDDLG-INMREFLLLEYASVLMSHKSLWQVAIDYLDLCPTEG 387

Query: 486 MGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQ 545
            G LE+LL + P+  N    K L IC+ + L  V+  I K  G    K+ + GS + W  
Sbjct: 388 RGALELLLPRIPLQTNDDAEKLLSICKQWRLPDVAREICKTLGQRALKNNRYGSALSWFI 447

Query: 546 QARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKS 605
           +A D A +  I+ ++F       S E  +  E +I+ LGS    +  L FL  YR+F + 
Sbjct: 448 RAGDYALVTHISWRLF----EEYSSEGEKLDEDVIENLGSGMFLSPRLSFLAKYREFFRL 503

Query: 606 LLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNL 665
             +           +A E L+SL++ P  P+ FW  LL D L LL  +E  + +  QT  
Sbjct: 504 YRE-------GDFLKAAELLVSLIEFPILPKSFWPLLLTDLLPLLELKE-VIFSEEQTYT 555

Query: 666 LLNKLQELS 674
           LLN L++L 
Sbjct: 556 LLNCLEKLL 564

A family of nucleoporins conserved from yeast to human. THe nuclear pore complex is a large assembly composed of two essential complexes: the heptameric Nup84 complex and the heteromeric Nic96-containing complex. The Nup84 complex is composed of one copy each of Nup84, Nup85, Nup120, Nup133, Nup145C, Sec13, and Seh1. The structure of a complex of Nup85 and Seh1 was solved. The N-terminus of Nup85 is inserted and forms a three-stranded blade that completes the Seh1 6-bladed beta-propeller in trans. Following its N-terminal insertion blade, Nup85 forms a compact cuboid structure composed of 20 helices, with two distinct modules, referred to as crown and trunk. Length = 564

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 711
PF07575566 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 100.0
KOG2271678 consensus Nuclear pore complex component (sc Nup85 100.0
PF12110290 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup 97.9
PF04121697 Nup84_Nup100: Nuclear pore protein 84 / 107 ; Inte 97.67
KOG1964800 consensus Nuclear pore complex, rNup107 component 96.56
KOG2168835 consensus Cullins [Cell cycle control, cell divisi 95.91
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 93.97
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human Back     alignment and domain information 
Probab=100.00  E-value=3.5e-111  Score=969.61  Aligned_cols=562  Identities=30%  Similarity=0.490  Sum_probs=342.5

Q ss_pred             EEEEEcCCCCCCCchHHHHHHhhcchhhHhhhhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHhcccccccccc
Q 005153           67 VEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSL  146 (711)
Q Consensus        67 ~~v~~~~~~~~~~~~~~R~L~~es~~~F~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~~~~~~  146 (711)
                      |.||.++.+.++++|++|+||+|||+||++||+.++.....++++..   -.+++++++++||++|++|++++++.+++.
T Consensus         2 ~~~~~~~~~~~~~s~~~R~lv~es~~iF~~LQ~~~~~~~~~~~~~~~---~~~e~~~~s~~yrs~i~~~~~~~~~~~~~~   78 (566)
T PF07575_consen    2 VKLYPVREDRIDDSPELRKLVNESFEIFASLQKDRQFSVPTDGMIKS---SSAEYVKISRAYRSIIRACLENLESIKEPI   78 (566)
T ss_dssp             -EEBEE--TT---SHHHHHHHHHHHHHHHHGGGGGS---------TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ceEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcccccccccccc---chHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            57899999999999999999999999999999987543222221111   124888999999999999999999854455


Q ss_pred             cCChhhhhccCCchhhHHHHHHHHHHHhcccCCCCcchHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhccCCCCC-
Q 005153          147 IEDPKEVLKKDPEPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDE-  225 (711)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~iW~L~Eily~~~~~~~~v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~~~p~~~-  225 (711)
                      .+++.++.+..++++++++|||||||||+++.+++++|++|++|+|++|..  |.++.        +++++....|.+| 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~iw~L~eil~~~~~~~~~v~~~Ll~WvNr~~~~--~~~~~--------~~~vl~~~~p~~~~  148 (566)
T PF07575_consen   79 IEDEEELEEQLEILYCLEAIWHLCEILYVDSQPRGPVPEQLLDWVNRFHFP--PSEEL--------AEEVLSSEPPYEHD  148 (566)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHSSSTT-S-TTTTHHHHHHHHHHHHHTTS----SHHHH--------HTTSCSS-HSCSGS
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCchHHHHHHHHHHhCCC--CchhH--------HHHHhccCCCCccc
Confidence            566666767788999999999999999999988899999999999999865  45442        2577775557777 


Q ss_pred             cchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhHHHHHHHHHHHhCCCCCccccccccccccCChhHHHHHH
Q 005153          226 PKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAW  305 (711)
Q Consensus       226 ~~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~w  305 (711)
                      |+||++|+++|+||++++|+++|+.|++++.+      ..+++++++++||++||+++++++        .+.++|..+|
T Consensus       149 p~FW~~v~~lvlrG~~~~a~~lL~~~s~~~~~------~~~~~~~~~~~LL~~~P~~~~~~~--------~s~~~f~~~~  214 (566)
T PF07575_consen  149 PDFWDYVQRLVLRGLFDQARQLLRLHSSYQSY------SLQSAFEALIQLLSSMPRYRPNSG--------QSESEFSSQW  214 (566)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHH-TTTTTTTH------HHHHHHHHHHHHHTT--------------------SS-HHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHhcccccch------hHHHHHHHHHHHHHhCCCccccch--------hhhHHHHHHH
Confidence            99999999999999999999999999998642      356899999999999999997652        4889999999


Q ss_pred             HHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchHHHhhhccHHHHHHHhhheecCCccccchHHHHHHHHHHh
Q 005153          306 EKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQL  385 (711)
Q Consensus       306 ~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~~~a~~~~~~  385 (711)
                      ++||.+|+++...  +.++....++++|++|++||+||+++|+++|+||||+++|+++|++|++++.+.++++++.|++.
T Consensus       215 ~~W~~~~~~l~~~--~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~a~~~~~~  292 (566)
T PF07575_consen  215 REWKSECRRLRSS--SLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEALVALLLYVDPTCKPFELLHEYAQSCLEE  292 (566)
T ss_dssp             HHHHHHHHHHHHH--S---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT------TTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHHHHHhheeeCCCcchhhhHHHHHHHHHhc
Confidence            9999999987544  34555567899999999999999999999999999999999999999999887689999999999


Q ss_pred             CCCCcCCchHHHHHHHHccCHHHHHHHHhhccC-cchHHHHHHHHHcCCCcccchhhhcccCCCCCchhHHHHHHHHHHH
Q 005153          386 KPMAASHRLMGLLIGILGENIEVVLAECSKGFG-PWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVL  464 (711)
Q Consensus       386 ~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld-~W~aAHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L  464 (711)
                      +|++.++++|+++.+||+||+.+||+.|+..+| +||+||++|||+++|.+.+    ..+.++++.+|||+++++||++|
T Consensus       293 ~~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~~~~~w~aahladLl~~~g~L~~----~~~~~~~~~~lre~~ll~YA~~L  368 (566)
T PF07575_consen  293 FPPDSTNPLEQILLAIFEGDIESVLKEISSLFDDWWFAAHLADLLEHKGLLED----SEQEDFGGSSLREYLLLEYASSL  368 (566)
T ss_dssp             S---TTSTTHHHHHHHHTS--GGGHHHHHHH--HHHHHHHHHHHHHHTTSS------SS-----TS-HHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHccCHHHHHHHHHHHccchhHHHHHHHHHHhcCcccc----ccccccccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999987766 5999999999999997442    23344545899999999999999


Q ss_pred             ccCCCcchhhhHHHhhchHhhHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHH
Q 005153          465 SSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWL  544 (711)
Q Consensus       465 ~s~~~LW~vai~YL~~c~~~G~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~  544 (711)
                      ++|++|||||++||++|+++|+.+|+++|+|+|++||++++|++++|+++||++++++|||++|++++++|+||+||.|+
T Consensus       369 ~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~  448 (566)
T PF07575_consen  369 MSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWF  448 (566)
T ss_dssp             HT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHhccCCcchhhhhHHHHHhcCCCccccCcchhhhhHHHHHHHHHhhhcCCchHHHHHHHHH
Q 005153          545 QQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVES  624 (711)
Q Consensus       545 ~rA~D~~~v~~iad~ll~~y~~~~s~~~~~~~~dll~~l~~~~~~s~~L~FL~kY~eF~~~~~~~~~~~~~~~~r~Aa~~  624 (711)
                      +||||...|++|+|++|++|+.++  ++.  +.++|+++++.+.++++|+||+|||+||++|++   +    ++++||++
T Consensus       449 ~ra~d~~~v~~i~~~ll~~~~~~~--~~~--~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~---~----~~~~Aa~~  517 (566)
T PF07575_consen  449 IRAGDYSLVTRIADRLLEEYCNNG--EPL--DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDE---G----DFREAASL  517 (566)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             HHCCCHHHHHHHHHHHHHHHhcCC--Ccc--cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhh---h----hHHHHHHH
Confidence            999999999999999999999874  222  369999999999999999999999999999955   4    56689999


Q ss_pred             HHHhhcCCCCchhcHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHH
Q 005153          625 LISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQEL  673 (711)
Q Consensus       625 Lv~Ll~s~~~Pk~fw~~LL~dalpLLe~~~~~~fs~~qt~~LL~~LEel  673 (711)
                      ||+||+++++||+||+.||.|++|||++++ ++|+++|||+||+|||++
T Consensus       518 Lv~Ll~~~~~Pk~f~~~LL~d~lplL~~~~-~~f~~~~~~~ll~~Le~~  565 (566)
T PF07575_consen  518 LVSLLKSPIAPKSFWPLLLCDALPLLESDE-VIFSSSDTYELLRCLEEL  565 (566)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHCCCCCcHHHHHHHHHHHHHHhCCCC-CccCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999976 789999999999999985

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
>KOG2271 consensus Nuclear pore complex component (sc Nup85) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex Back     alignment and domain information
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog Back     alignment and domain information
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
3f3f_C570 Nucleoporin NUP85; structural protein, protein com 3e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B Length = 570 Back     alignment and structure
 Score =  131 bits (329), Expect = 3e-32
 Identities = 60/490 (12%), Positives = 141/490 (28%), Gaps = 79/490 (16%)

Query: 96  LLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLK 155
           L   R  +  ++  ++S           +  E++  ++  +    +  +  I   K    
Sbjct: 118 LGDDRVFNVPTIGVVNS----------NFAKEHNATVNLAMEAILNELEVFIGRVK---- 163

Query: 156 KDPEPSNLKAAWELMESFYADKLSQAW---------------LPERLVDWLADYDSLFSS 200
              +   +   +EL ES       +                   E L++W+   D     
Sbjct: 164 --DQDGRVNRFYELEESLTVLNCLRTMYFILDGQDVEENRSEFIESLLNWINRSDG---- 217

Query: 201 TQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLG 260
             +  + + V   KD  + + + +   +W++++  +  G L   +  +            
Sbjct: 218 EPDEEYIEQVFSVKDSTAGKKVFETQYFWKLLNQLVLRGLLSQAIGCIE-RSDLLPYLSD 276

Query: 261 NRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTF 320
                   V     L+ + P+                  D    + +W+  + KL  +  
Sbjct: 277 TCAVSFDAVSDSIELLKQYPK------------------DSSSTFREWKNLVLKLSQAFG 318

Query: 321 WIQCAHR-QTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLA 379
                   + ++ + + L ++ GN   +   +  W E +    LY  P    LE      
Sbjct: 319 SSATDISGELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFLLYYIP---SLELSAEYL 375

Query: 380 QKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAG------- 432
           Q  ++   +  ++      + I+   I  +L                 +  A        
Sbjct: 376 QMSLEANVVDITNDWEQPCVDIISGKIHSILPVMES-LDSCTAAFTAMICEAKGLIENIF 434

Query: 433 ---------SHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYL----T 479
                    S++ + +L +      G++   L+   +          W +A   +    T
Sbjct: 435 EGEKNSDDYSNEDNEMLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSAT 494

Query: 480 SCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGS 539
                   ++  LL   P   N  +   L IC  + L  ++  I    G           
Sbjct: 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIE 554

Query: 540 GVYWLQQARD 549
            +    +A  
Sbjct: 555 SIANFSRAGK 564
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query711
3f3f_C570 Nucleoporin NUP85; structural protein, protein com 100.0
3bg1_B442 Nucleoporin NUP145; NPC, transport, WD repeat, aut 98.21
3jro_A753 Fusion protein of protein transport protein SEC13 98.2
3iko_C460 Nucleoporin NUP84; NPC, transport, WD repeat, auto 95.35
2pm7_A399 Protein WEB1, protein transport protein SEC31; bet 94.54
2qx5_A661 Nucleoporin NIC96; mRNA transport, nuclear pore co 91.59
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B Back     alignment and structure
Probab=100.00  E-value=1.6e-67  Score=588.41  Aligned_cols=434  Identities=13%  Similarity=0.154  Sum_probs=316.2

Q ss_pred             CCCCchHHHHHHhhcchhhHhhhhhh-hcccccccccCCCCCCcHHHHHHHHHHHHHHHHHhccccccccc--ccCChhh
Q 005153           76 GEISDAQWRRIAYGSVSPFALLQSRK-NSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQS--LIEDPKE  152 (711)
Q Consensus        76 ~~~~~~~~R~L~~es~~~F~~lQ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~~~~~--~~~~~~~  152 (711)
                      .+-+++.-..-|+..|.||-.|=.-+ .+.+-   ++...+  +. ..++...--.+..+.+++++...+.  .+++  +
T Consensus        97 ~~d~s~~~~~Yv~~lf~~~~~l~~~~~~~~~~---iG~i~~--~~-~~~~~~~v~~a~~~~~~~l~~~i~~~~~~~~--~  168 (570)
T 3f3f_C           97 RLDTSKEFSAYVSGLFEIYRDLGDDRVFNVPT---IGVVNS--NF-AKEHNATVNLAMEAILNELEVFIGRVKDQDG--R  168 (570)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTGGGGSCCC--------CCS--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--C
T ss_pred             CCcccHHHHHHHHHHHHHHHHhccccccCCCC---ceeeec--ch-hhHHHHHHHHHHHHHHHHHHHHHHhhcccch--H
Confidence            34566899999999999998873221 12221   121211  11 0122222224455555555542211  0111  0


Q ss_pred             hhccCCchhhHHHHHHHHHHHhcccCCCC------cchHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhc------c
Q 005153          153 VLKKDPEPSNLKAAWELMESFYADKLSQA------WLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSL------Q  220 (711)
Q Consensus       153 ~~~~~~~~~~~~~iW~L~Eily~~~~~~~------~v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~------~  220 (711)
                      + .....+.....||++++.+|+...+.+      .+.++|++|||++|+.  |.+|.        +++|+..      +
T Consensus       169 ~-~~~~~l~~~l~Il~cl~a~~F~~d~~~~~~~~~~~~e~Ll~WVN~~d~e--P~~E~--------~~eVm~~~~~~~~~  237 (570)
T 3f3f_C          169 V-NRFYELEESLTVLNCLRTMYFILDGQDVEENRSEFIESLLNWINRSDGE--PDEEY--------IEQVFSVKDSTAGK  237 (570)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHSSSTTSCGGGGHHHHHHHHHHHHHHHCCC--SCHHH--------HHHHTTC----CCS
T ss_pred             H-HHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHhccCC--CCHHH--------HHHHHhcccccCCC
Confidence            0 002235677899999999999865433      6779999999999977  65553        4899885      9


Q ss_pred             CCCCCcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccC-ccchhHHHHHHHHHHHhCCCCCccccccccccccCChh
Q 005153          221 VIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGN-RETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKP  299 (711)
Q Consensus       221 ~p~~~~~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~-~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~  299 (711)
                      .|++||+||++|+++|+||+++||+++|+.++ + ..+++. ++....+++.++.||++||+++.               
T Consensus       238 ~P~eHp~FW~~v~~LvLRGl~~qA~~~L~~s~-~-~~~L~~~~~~~~~~i~dli~LL~~yP~~S~---------------  300 (570)
T 3f3f_C          238 KVFETQYFWKLLNQLVLRGLLSQAIGCIERSD-L-LPYLSDTCAVSFDAVSDSIELLKQYPKDSS---------------  300 (570)
T ss_dssp             SSSCSHHHHHHHHHHHHTTCHHHHHHHHTTTT-T-THHHHHSCHHHHHHHHHHHHHHTTCCSSCH---------------
T ss_pred             CCCCCccHHHHHHHHHHcccHHHHHHHHHhcc-c-chhhcccChHHHHHHHHHHHHHHhCCCCch---------------
Confidence            99999999999999999999999999999654 3 123332 33445789999999999998852               


Q ss_pred             HHHHHHHHHHHHHH----HhhccchhhhccccccHHhHHHHHHHhcCCchHHHhhhccHHHHHHHhhheecCCccccchH
Q 005153          300 DFMKAWEKWRAQIA----KLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESM  375 (711)
Q Consensus       300 ef~~~w~~W~~~~~----~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l  375 (711)
                         .+|++||..|.    .++.+.|-.   +.+++++|++|++||+|++++|+++|+||||+++|+++|++|++++   .
T Consensus       301 ---~~fr~WK~~~~e~r~~l~~~~~~i---~~ei~~~Ledll~Il~Gd~~~Il~~~~tWYEal~allLy~~Pt~k~---~  371 (570)
T 3f3f_C          301 ---STFREWKNLVLKLSQAFGSSATDI---SGELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFLLYYIPSLEL---S  371 (570)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHTSCCCS---CHHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHHHHHHHHTCCCGGG---H
T ss_pred             ---HHHHHHHHHHHHHHHHhccccccc---chHHHHHHHHHHHHHcCCHHHHHHHcccHHHHHhHheeeecCcccc---c
Confidence               24888888885    344444411   1237899999999999999999999999999999999999999965   4


Q ss_pred             HHHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhccCcchHHHHHHHHHcCCCcccchhh--------hcc---
Q 005153          376 YGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLH--------EER---  444 (711)
Q Consensus       376 ~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld~W~aAHl~dLL~~~g~l~~~ll~--------~~~---  444 (711)
                      ++|++.|++..|++.++.+|.++++||+||+.+||+.|+ .+|+|+|||++|||+++|++.+.+-.        .++   
T Consensus       372 ~~y~q~al~~~p~d~~~~~E~~~~~i~egni~~VL~~lq-~ld~~~AA~vAdLle~~GlLe~~~~~~~~~~~l~~~~~~~  450 (570)
T 3f3f_C          372 AEYLQMSLEANVVDITNDWEQPCVDIISGKIHSILPVME-SLDSCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDNEM  450 (570)
T ss_dssp             HHHHHHHHHHSCCCTTSSSHHHHHHHHTTCCGGGHHHHH-HHCHHHHHHHHHHHHHHTSSCCCCCC--------------
T ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHccCHHHHHHHHH-HhhHHHHHHHHHHHHHhCcccchhhhcccccccccccccc
Confidence            689999999999999999999999999999999999995 89999999999999999997653210        011   


Q ss_pred             --cCC-CCCchhHHHHHHHHHH--HccCCCcchhhhHHHhhchH----hhHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Q 005153          445 --DNL-GGISMEELHRLVYAQV--LSSHPLTWQIAPIYLTSCIK----QGMGLLEMLLYKQPVDHNQLLLKNLEICRLYE  515 (711)
Q Consensus       445 --~~~-~~~~lre~~Ll~YA~~--L~s~~~LW~vai~YL~~c~~----~G~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~  515 (711)
                        +.+ .+.+||||++++||.+  +++|++||||||+||++||.    .||.+|+++|+|+|++|+++++|++++|+++|
T Consensus       451 ~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~  530 (570)
T 3f3f_C          451 LEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWR  530 (570)
T ss_dssp             CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHT
T ss_pred             HhhhhcCcchHHHHHHHHHHhhcccccCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCC
Confidence              113 3679999999999999  99999999999999999986    59999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHH
Q 005153          516 LDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNR  555 (711)
Q Consensus       516 L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~  555 (711)
                      |++++++||+++|++++++|++|+||+||+|||+..+|++
T Consensus       531 L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~Vk~  570 (570)
T 3f3f_C          531 LPEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYELVKS  570 (570)
T ss_dssp             CHHHHHHHHHHHHC--------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHCccHHHHHHHHHHcCChhhccC
Confidence            9999999999999999999999999999999999999874
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C Back     alignment and structure
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B Back     alignment and structure
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00