Citrus Sinensis ID: 005155
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 711 | 2.2.26 [Sep-21-2011] | |||||||
| D8WUA4 | 1058 | Protein translocase subun | yes | no | 0.992 | 0.667 | 0.844 | 0.0 | |
| B7K818 | 935 | Protein translocase subun | yes | no | 0.952 | 0.724 | 0.490 | 0.0 | |
| Q8DHU4 | 929 | Protein translocase subun | yes | no | 0.969 | 0.741 | 0.501 | 0.0 | |
| Q2JJ09 | 957 | Protein translocase subun | yes | no | 0.957 | 0.711 | 0.497 | 0.0 | |
| Q2JW99 | 954 | Protein translocase subun | yes | no | 0.957 | 0.713 | 0.500 | 0.0 | |
| Q55709 | 932 | Protein translocase subun | N/A | no | 0.957 | 0.730 | 0.489 | 0.0 | |
| Q5N2Q7 | 948 | Protein translocase subun | yes | no | 0.953 | 0.715 | 0.491 | 0.0 | |
| Q55357 | 948 | Protein translocase subun | yes | no | 0.953 | 0.715 | 0.491 | 0.0 | |
| Q3MB92 | 930 | Protein translocase subun | yes | no | 0.947 | 0.724 | 0.487 | 0.0 | |
| Q8YMS8 | 930 | Protein translocase subun | yes | no | 0.947 | 0.724 | 0.487 | 0.0 |
| >sp|D8WUA4|SECA2_ARATH Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1243 bits (3216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/706 (84%), Positives = 649/706 (91%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGG VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 146 MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 205
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 206 EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 265
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+ HY VELK
Sbjct: 266 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 325
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
NSVELTEEGI+LAEMALET DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 326 ENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 385
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 386 NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 445
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF GRPVLVG+
Sbjct: 446 EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 505
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 506 TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 565
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLA++IIED +L LT E L +DD S KVLS+IK+G SSLALLA+A+L+A
Sbjct: 566 LGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPSSLALLARASLMA 625
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYVGK+E KSWT ++AKS +ES+E SQ+M+ ELQ LI++QS MYPLGP +AL YLSVL
Sbjct: 626 KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVL 685
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 686 KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 745
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 746 FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 805
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P K
Sbjct: 806 EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQK 851
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Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. May have a central role in coupling the hydrolysis of ATP to the transfer of proteins across the membrane. Arabidopsis thaliana (taxid: 3702) |
| >sp|B7K818|SECA_CYAP7 Protein translocase subunit SecA OS=Cyanothece sp. (strain PCC 7424) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/734 (49%), Positives = 475/734 (64%), Gaps = 57/734 (7%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VLH G IAEMKTGEGKTLVSTL AYLN LTG+GVH+VTVNDYLA+RDA
Sbjct: 84 MRHFDVQLMGGIVLHKGQIAEMKTGEGKTLVSTLPAYLNGLTGKGVHIVTVNDYLARRDA 143
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGLSVGLIQ GM PE+R+ NY CDITYT NSELGFDYLRDN+A + ++V
Sbjct: 144 EWMGQVHRFLGLSVGLIQSGMSPEDRKKNYACDITYTTNSELGFDYLRDNMATSMAEVVQ 203
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------H 174
R PF+F ++DEVDS+LIDE R PL+ISG + +Y A+++A+ LV+
Sbjct: 204 R---PFNFCVIDEVDSILIDEARTPLIISGPIDRPTEKYIQASQIAKQLVKQEVEDGPGD 260
Query: 175 YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234
Y V+ K ++ LT+EG AE L DL+D+++PWA ++ NA+KAKE + +DV YIVR
Sbjct: 261 YEVDEKARNILLTDEGYKKAEQLLGVKDLFDQDNPWAHYIFNAIKAKELFTKDVNYIVRG 320
Query: 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGM 294
G+ +I++E TGRV RRWS+G+HQA+EAKE ++IQ ++ +A ITYQ+ F LYPKLSGM
Sbjct: 321 GEVVIVDEFTGRVLAGRRWSDGLHQAIEAKERVEIQQETQTLATITYQNFFLLYPKLSGM 380
Query: 295 TGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354
TGTAKTEE E K++ + V +PTN P+ R DLP + RGKW +EVE + + GR
Sbjct: 381 TGTAKTEETELEKVYNLQVTIIPTNRPSQRYDLPDAVYKAERGKWMAVAEEVEELHQKGR 440
Query: 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAG 414
P+LVG+TSVE SE LS+LL+Q+ IPHN+LNARP+ RE+E VAQAGRK A+TI+TNMAG
Sbjct: 441 PILVGTTSVEKSELLSNLLRQKEIPHNLLNARPENVERESEIVAQAGRKGAVTIATNMAG 500
Query: 415 RGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS--EIKLGSSSLAL 472
RGTDIILGGN +++ I + L+ PK++ E +L + +L
Sbjct: 501 RGTDIILGGNSDYMSRLKIREYLM------------------PKLVKPEEDELAVNVPSL 542
Query: 473 LAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLG--- 529
K + + + K+W + + F + LKE K+ Q LG
Sbjct: 543 GGKRSRPQGFASDKKVKTW--KASPDIFPTELSEETVKALKEAVKIAVDQHGQQSLGELE 600
Query: 530 ------------PTVAL-------TYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHES 570
PT + Y + + E+ S E +EV LGGLHV+GT HES
Sbjct: 601 AEEKIAIASENAPTDDIVIQKLREVYKKIRAEYEIFTSKEHNEVVELGGLHVMGTERHES 660
Query: 571 RRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDA 630
RRIDNQLRGRAGRQGDPGSTRF +SL+D + + F D L+ + +EDMPIE
Sbjct: 661 RRIDNQLRGRAGRQGDPGSTRFFLSLEDNLLKIFGGDR--VARLMDALQVEEDMPIESGM 718
Query: 631 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYM 690
+ R L G Q E YY+ IRK + E+DEV+ QRK +Y R+ +L G + +Q+ QY
Sbjct: 719 LTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRKAIYAERRRVLEGLD--LKEQVLQYA 776
Query: 691 QAVVDEIIFGNVDP 704
+ +DEI+ V+P
Sbjct: 777 EKTMDEIVEAYVNP 790
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Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Cyanothece sp. (strain PCC 7424) (taxid: 65393) |
| >sp|Q8DHU4|SECA_THEEB Protein translocase subunit SecA OS=Thermosynechococcus elongatus (strain BP-1) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/714 (50%), Positives = 471/714 (65%), Gaps = 25/714 (3%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG +LHDG IAEMKTGEGKTLV+TL AYLNALTG+GVH+VTVNDYLA+RDA
Sbjct: 77 MRHFDVQLIGGMILHDGQIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLARRDA 136
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGL+VGLIQ+ M P+ER+ +Y CDITY NSE+GFDYLRDN+A + ++V
Sbjct: 137 EWMGQVHRFLGLTVGLIQQQMAPQERQKSYACDITYATNSEIGFDYLRDNMATSMVEVVQ 196
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PF++ I+DEVDSVLIDE R PL+ISG+ + +Y AA++A LL + HY V+ K
Sbjct: 197 R---PFNYCIIDEVDSVLIDEARTPLIISGQVERPTEKYLKAAEIARLLKKDEHYEVDEK 253
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V +T+EG AE L +DL+D DPWA ++ NA+KAKE ++RDV YIVRNG+ +I+
Sbjct: 254 ARNVLMTDEGFIEAEKLLGVSDLYDPQDPWAHYIFNAIKAKELFQRDVNYIVRNGEVVIV 313
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGRV RRWS+G+HQA+EAKEGL+IQ +S +A ITYQ+LF LYPKL+GMTGTAKT
Sbjct: 314 DEFTGRVMVGRRWSDGLHQAIEAKEGLEIQNESQTLATITYQNLFLLYPKLAGMTGTAKT 373
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE EF K++++ V VPTN P+ R D P + T R KW E + GRPVLVG+
Sbjct: 374 EEAEFEKIYKLEVTVVPTNRPSQRRDFPDVVYKTERAKWLAVASECAEVHATGRPVLVGT 433
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SE LS LL++ IPHN+LNA+P+ REAE +AQAGRK A+TISTNMAGRGTDII
Sbjct: 434 TSVEKSELLSQLLRELEIPHNLLNAKPENVEREAEIIAQAGRKGAVTISTNMAGRGTDII 493
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGN +A+ + + + + V + P +L +K+ ++ A
Sbjct: 494 LGGNADYMARLKVREYFMPRI--------VMPPSDDPMMLLGLKMDRGGGQGFSQGAQKN 545
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSM----NLKELQK------LIDKQSAMYPLGP 530
+EA+ +V+++ +L ELQ +K P+
Sbjct: 546 WKASPGLFPCEMSKEAEKLLRHAVDVAVKTYGERSLPELQAEDMLAIASEKAPTEDPVIQ 605
Query: 531 TVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGST 590
+ + + ++ EV E EV LGGLHVIGT HESRRIDNQLRGRAGRQGDPGST
Sbjct: 606 ALRDAFNRIREEYEVVTKKEHEEVVALGGLHVIGTERHESRRIDNQLRGRAGRQGDPGST 665
Query: 591 RFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIR 650
RF +SL+D + + F D ++ RI DEDMPIE + R L Q E YY+ IR
Sbjct: 666 RFFLSLEDNLLRIFGGDRIASIMNAMRI--DEDMPIESPLLTRSLENAQRKVETYYYDIR 723
Query: 651 KSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704
K + E+DEV+ QR+ +Y R+ +L G E ++ +Y + +D+II V+P
Sbjct: 724 KQVFEYDEVMNNQRRAIYAERRRVLEG--EDLKDRVLEYAEKTMDDIIAAYVNP 775
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Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) |
| >sp|Q2JJ09|SECA_SYNJB Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/725 (49%), Positives = 475/725 (65%), Gaps = 44/725 (6%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RH+DVQ+IGG VLH+G IAEMKTGEGKTLV+TL AYLN LTG+GVH+VTVN YLA+RD+
Sbjct: 80 LRHYDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPAYLNGLTGKGVHIVTVNGYLARRDS 139
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGL+VGL+Q GM PEE+R +Y CDITY NSELGFDYLRDN+A + ++++
Sbjct: 140 EWMGQVHRFLGLTVGLVQEGMSPEEKRRSYNCDITYCTNSELGFDYLRDNMATDIKEVMQ 199
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PF++ I+DEVDS+LIDE R PL+ISG+ ++ +Y AA+VA L++ HY V+ K
Sbjct: 200 R---PFNYCIIDEVDSILIDEARTPLIISGQVARPSEKYLRAAQVARELIRDEHYEVDEK 256
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V LT+EG AE L +DL+D DPWA FV NA+KAKE + +DV YIVRN + +I+
Sbjct: 257 ARNVILTDEGFEAAERLLGVSDLFDPKDPWAHFVFNAVKAKELFIKDVHYIVRNQEVVIV 316
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGRV RRWS+G+HQAVEAKEG+ IQ++S +A ITYQ+LF LYPKLSGMTGTA+T
Sbjct: 317 DEFTGRVLPGRRWSDGLHQAVEAKEGVPIQSESQTLATITYQNLFLLYPKLSGMTGTART 376
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE EF K + + V +PTN P R D P + T RGKW+ +E+ M GRPVLVG+
Sbjct: 377 EEAEFGKTYNLEVTVIPTNRPIRRKDAPDLVYKTERGKWQAVAEEIAHMHAQGRPVLVGT 436
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SE LS +LK+ GIPHN+LNA+P+ REAE +AQAGRK A+TI+TNMAGRGTDII
Sbjct: 437 TSVEKSERLSAMLKEMGIPHNLLNAKPENVEREAEIIAQAGRKGAVTIATNMAGRGTDII 496
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGN + +A+ + +RL+ L + ++ D+ LGS +
Sbjct: 497 LGGNAEYMARLKLRERLMPKLAQ----LDADN-----------PLGSVQMVGRGGGQGFG 541
Query: 481 KYVGKAEGKSWTYQEAKSFFSE-SVEMSQSMN-----------LKELQKLI--------- 519
K + KSWT + E S +Q+++ L L +L+
Sbjct: 542 GTAPKPK-KSWTVVSPNFYPCELSARTNQALDEVVAAAVTKYGLNRLPELVVEDLIAVAS 600
Query: 520 DKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRG 579
+K PL + Y S+ + E E EV RLGGLHVIGT HESRRIDNQLRG
Sbjct: 601 EKAPVQDPLILQLREVYNSIKAEYEKITEAEHEEVVRLGGLHVIGTERHESRRIDNQLRG 660
Query: 580 RAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639
RAGRQGDPGS+RF +SL+D + + F + L+ +EDMPIE + L Q
Sbjct: 661 RAGRQGDPGSSRFFLSLEDNLLKIFGGER--VAKLMDMFRVEEDMPIEHPLLSSSLENAQ 718
Query: 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIF 699
E YYF +RK + E+DEV+ QR+ +Y R+ IL G E+ +I Y++ V EI+
Sbjct: 719 RKVEVYYFDMRKQVFEYDEVMNNQRRAIYSERRRILEG--ENLKTKILDYVRKTVGEIVR 776
Query: 700 GNVDP 704
+V+P
Sbjct: 777 AHVNP 781
|
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332) |
| >sp|Q2JW99|SECA_SYNJA Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-3-3Ab) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/725 (50%), Positives = 472/725 (65%), Gaps = 44/725 (6%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RH+DVQ+IGG VLH+G IAEMKTGEGKTLV+TL AYLN LTG+GVH+VTVN YLA+RD+
Sbjct: 80 LRHYDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPAYLNGLTGKGVHIVTVNGYLARRDS 139
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGL+VGL+Q GM +E+R +Y CDITY NSELGFDYLRDN+A + ++++
Sbjct: 140 EWMGQVHRFLGLTVGLVQEGMSTDEKRRSYHCDITYCTNSELGFDYLRDNMATDIKEVMQ 199
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PF++ I+DEVDS+LIDE R PL+ISG+ ++ +Y AA+VA L++ HY V+ K
Sbjct: 200 R---PFNYCIIDEVDSILIDEARTPLIISGQMARPSEKYLKAAQVARELIRDEHYEVDEK 256
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V LT+EG AE L +DL+D DPWA FV NA+KAKE + RDV YIVRN + +I+
Sbjct: 257 ARNVILTDEGFEAAERLLGVSDLFDPKDPWAHFVFNAVKAKELFIRDVHYIVRNQEVVIV 316
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGRV RRWS+G+HQAVEAKEG+ IQ +S +A ITYQ+LF LYPKLSGMTGTA+T
Sbjct: 317 DEFTGRVLPGRRWSDGLHQAVEAKEGVPIQNESQTLATITYQNLFLLYPKLSGMTGTART 376
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE EF K + + V +PTN P R D P + T KW+ +E+ M GRPVLVG+
Sbjct: 377 EEAEFSKTYNLEVTVIPTNRPIRRKDAPDLVYKTENAKWKAVAEEIAHMHAQGRPVLVGT 436
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SE LS +LK+ GIPHN+LNA+P+ REAE +AQAGRK A+TI+TNMAGRGTDII
Sbjct: 437 TSVEKSERLSAMLKEMGIPHNLLNAKPENVEREAEIIAQAGRKGAVTIATNMAGRGTDII 496
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGN + +A+ + +RL+ L V++D LGS+S
Sbjct: 497 LGGNAEYMARLKLRERLMPKL------VQLDPDNP---------LGSASTTSRGGGQGFG 541
Query: 481 KYVGKAEGKSWTYQEAKSFFSE-SVEMSQSMN-----------LKELQKLI--------- 519
K + KSWT + E S SQ+++ L L +L+
Sbjct: 542 PASPKPK-KSWTVVSPNFYPCELSARTSQALDEVVAAAVAKYGLNRLPELVVEDLIAVAS 600
Query: 520 DKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRG 579
+K PL + Y S+ + E E EV RLGGLHVIGT HESRRIDNQLRG
Sbjct: 601 EKAPVQDPLILQLREVYNSIKAEYEKVTEAEHEEVVRLGGLHVIGTERHESRRIDNQLRG 660
Query: 580 RAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639
RAGRQGDPGS+RF +SL+D + + F + L+ DEDMPIE + L Q
Sbjct: 661 RAGRQGDPGSSRFFLSLEDNLLKIFGGER--VAKLMDMFRVDEDMPIEHPLLSSSLENAQ 718
Query: 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIF 699
E YYF +RK + E+DEV+ QR+ +Y R+ IL G E+ +I YM+ V+EI+
Sbjct: 719 RKVEVYYFDLRKQVFEYDEVMNNQRRAIYSERRRILEG--ENLKPKILDYMRKTVEEIVR 776
Query: 700 GNVDP 704
+V+P
Sbjct: 777 AHVNP 781
|
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327) |
| >sp|Q55709|SECA_SYNY3 Protein translocase subunit SecA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/727 (48%), Positives = 471/727 (64%), Gaps = 46/727 (6%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG +LH G IAEMKTGEGKTLV+TL +YLN LTG+GVHVVTVNDYLA+RDA
Sbjct: 84 MRHFDVQLLGGIILHKGQIAEMKTGEGKTLVATLPSYLNGLTGKGVHVVTVNDYLARRDA 143
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++HRFLGL+VGL+Q GM PEER+ NY CDITYT NSELGFDYLRDN++ ++V
Sbjct: 144 EWMGQIHRFLGLTVGLVQSGMNPEERKKNYACDITYTTNSELGFDYLRDNMSTAMIEVVQ 203
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PF+F I+DEVDS+LIDE R PL+ISG+ + +Y A+ +A L +HY V+ K
Sbjct: 204 R---PFNFCIIDEVDSILIDEARTPLIISGQVERPTEKYLQASDIAAQLEPEIHYEVDEK 260
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V +T+EG AE L+T DL+D+NDPWA ++ NA+KAKE + +DV YIVRNG+ +I+
Sbjct: 261 QRNVLMTDEGFEKAEQLLQTTDLFDKNDPWAHYIFNAIKAKELFLKDVNYIVRNGEVVIV 320
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGR+ RRWS+G+HQA+EAKE ++IQ +S +A ITYQ+ F LYPKLSGMTGTAKT
Sbjct: 321 DEFTGRIMVGRRWSDGLHQAIEAKERVEIQKESQTLATITYQNFFLLYPKLSGMTGTAKT 380
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE E K++ + V PTN P+ R D P + KW+ E E + + GRP+LVG+
Sbjct: 381 EETELEKVYNLQVTITPTNRPSSRQDWPDVVYKNEEAKWKAVALECEELHQQGRPILVGT 440
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SE +S LL+ GI HN+LNARP+ RE+E VAQAGRK A+TI+TNMAGRGTDII
Sbjct: 441 TSVEKSEVISRLLQSSGIHHNLLNARPENVERESEIVAQAGRKGAVTIATNMAGRGTDII 500
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA---KAA 477
LGGN +A+ + + L+ + R DD +LG+ ++ K
Sbjct: 501 LGGNSDYMARLKVREYLMPKIVRPE-----DD-----------ELGAGVTGWVSGREKPQ 544
Query: 478 LLAKYVGKAEGKSWTY----------QEAKSFFSESVEMS-QSMNLKELQKL--IDKQSA 524
GK + K+W QE + ++V+ + L+ L +L DK +
Sbjct: 545 GFGNQNGKKKVKTWQVSPDIYPTTISQETEDLLKKAVKFAVDQYGLQSLTELEAEDKLAI 604
Query: 525 MYPLGPT-------VALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQL 577
GPT + Y + ++ EV S E EV LGGLHVIGT HESRR+DNQL
Sbjct: 605 ASEKGPTDDPVILKLREVYNQIRREYEVLTSAEHKEVVELGGLHVIGTERHESRRVDNQL 664
Query: 578 RGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLG 637
RGRAGRQGDPGSTRF +SL+D + + F D L++ +EDMPIE + L G
Sbjct: 665 RGRAGRQGDPGSTRFFLSLEDNLLRIFGGDR--VAGLMNMFRVEEDMPIESKMLTGSLEG 722
Query: 638 LQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEI 697
Q E YY+ IRK + E+DEV+ QRK +Y R+ +L G + +Q+ Y + +DEI
Sbjct: 723 AQKKVETYYYDIRKQVFEYDEVMNNQRKAIYAERRRVLEGLD--LKEQVLVYAEKTMDEI 780
Query: 698 IFGNVDP 704
+ V+P
Sbjct: 781 VDAYVNP 787
|
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q5N2Q7|SECA_SYNP6 Protein translocase subunit SecA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/739 (49%), Positives = 477/739 (64%), Gaps = 61/739 (8%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RHFDVQ+IGG +LHDG IAEMKTGEGKTLV+TL +YLNAL+G+G HVVTVNDYLA+RDA
Sbjct: 85 LRHFDVQMIGGMILHDGQIAEMKTGEGKTLVATLPSYLNALSGKGAHVVTVNDYLARRDA 144
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGLSVGLIQ+GM PEERR NY CDITY NSELGFDYLRDN+AA E++V
Sbjct: 145 EWMGQVHRFLGLSVGLIQQGMSPEERRRNYNCDITYATNSELGFDYLRDNMAAVIEEVVQ 204
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH------ 174
R PF++A++DEVDS+LIDE R PL+ISG+ + +Y A++VA LL + +
Sbjct: 205 R---PFNYAVIDEVDSILIDEARTPLIISGQVDRPSEKYMRASEVAALLQRSTNTDSEEE 261
Query: 175 ----YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230
Y V+ K +V LT++G AE L +DL+D NDPWA ++ NA+KAKE + +DV Y
Sbjct: 262 PDGDYEVDEKGRNVLLTDQGFINAEQLLGVSDLFDSNDPWAHYIFNAIKAKELFIKDVNY 321
Query: 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPK 290
IVR G+ +I++E TGRV RRWS+G+HQAVE+KEG++IQ ++ +A ITYQ+ F LYPK
Sbjct: 322 IVRGGEIVIVDEFTGRVMPGRRWSDGLHQAVESKEGVEIQPETQTLASITYQNFFLLYPK 381
Query: 291 LSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF 350
LSGMTGTAKTEE EF K +++ V VPTN + R D P + T GKW + +
Sbjct: 382 LSGMTGTAKTEELEFEKTYKLEVTVVPTNRVSRRRDQPDVVYKTEIGKWRAIAADCAELH 441
Query: 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410
GRPVLVG+TSVE SE+LS LL +QGIPHN+LNA+P+ REAE VAQAGR+ A+TIST
Sbjct: 442 AEGRPVLVGTTSVEKSEFLSQLLNEQGIPHNLLNAKPENVEREAEIVAQAGRRGAVTIST 501
Query: 411 NMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS--EIKLGSS 468
NMAGRGTDIILGGN +A+ + + + P+++S E G +
Sbjct: 502 NMAGRGTDIILGGNADYMARLKLREYWM------------------PQLVSFEEDGFGIA 543
Query: 469 SLALLAKAALLAKYVGKAEG----KSWTYQ----------EAKSFFSESVEMS-QSMNLK 513
+A L A+ G G K+W EA+ +V++ ++
Sbjct: 544 GVAGLEGGRPAAQGFGSPNGQKPRKTWKASSDIFPAELSTEAEKLLKAAVDLGVKTYGGN 603
Query: 514 ELQKLI--DKQSAMYPLGPT-------VALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIG 564
L +L+ DK + PT + Y V K+ E E +EV LGGLHVIG
Sbjct: 604 SLSELVAEDKIATAAEKAPTDDPVIQKLREAYQQVRKEYEAVTKQEQAEVVELGGLHVIG 663
Query: 565 TSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDM 624
T HESRR+DNQLRGRAGRQGDPGSTRF +SL+D + + F D L++ +EDM
Sbjct: 664 TERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDR--VAKLMNAFRVEEDM 721
Query: 625 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQ 684
PIE + R L G Q E YY+ IRK + E+DEV+ QR+ +Y R+ +L G +
Sbjct: 722 PIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RELKE 779
Query: 685 QIFQYMQAVVDEIIFGNVD 703
Q+ QY + +DEI+ +++
Sbjct: 780 QVIQYGERTMDEIVDAHIN 798
|
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) |
| >sp|Q55357|SECA_SYNE7 Protein translocase subunit SecA OS=Synechococcus elongatus (strain PCC 7942) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/739 (49%), Positives = 477/739 (64%), Gaps = 61/739 (8%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RHFDVQ+IGG +LHDG IAEMKTGEGKTLV+TL +YLNAL+G+G HVVTVNDYLA+RDA
Sbjct: 85 LRHFDVQMIGGMILHDGQIAEMKTGEGKTLVATLPSYLNALSGKGAHVVTVNDYLARRDA 144
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGLSVGLIQ+GM PEERR NY CDITY NSELGFDYLRDN+AA E++V
Sbjct: 145 EWMGQVHRFLGLSVGLIQQGMSPEERRRNYNCDITYATNSELGFDYLRDNMAAVIEEVVQ 204
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH------ 174
R PF++A++DEVDS+LIDE R PL+ISG+ + +Y A++VA LL + +
Sbjct: 205 R---PFNYAVIDEVDSILIDEARTPLIISGQVDRPSEKYMRASEVAALLQRSTNTDSEEE 261
Query: 175 ----YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230
Y V+ K +V LT++G AE L +DL+D NDPWA ++ NA+KAKE + +DV Y
Sbjct: 262 PDGDYEVDEKGRNVLLTDQGFINAEQLLGVSDLFDSNDPWAHYIFNAIKAKELFIKDVNY 321
Query: 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPK 290
IVR G+ +I++E TGRV RRWS+G+HQAVE+KEG++IQ ++ +A ITYQ+ F LYPK
Sbjct: 322 IVRGGEIVIVDEFTGRVMPGRRWSDGLHQAVESKEGVEIQPETQTLASITYQNFFLLYPK 381
Query: 291 LSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF 350
LSGMTGTAKTEE EF K +++ V VPTN + R D P + T GKW + +
Sbjct: 382 LSGMTGTAKTEELEFEKTYKLEVTVVPTNRVSRRRDQPDVVYKTEIGKWRAIAADCAELH 441
Query: 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410
GRPVLVG+TSVE SE+LS LL +QGIPHN+LNA+P+ REAE VAQAGR+ A+TIST
Sbjct: 442 AEGRPVLVGTTSVEKSEFLSQLLNEQGIPHNLLNAKPENVEREAEIVAQAGRRGAVTIST 501
Query: 411 NMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS--EIKLGSS 468
NMAGRGTDIILGGN +A+ + + + P+++S E G +
Sbjct: 502 NMAGRGTDIILGGNADYMARLKLREYWM------------------PQLVSFEEDGFGIA 543
Query: 469 SLALLAKAALLAKYVGKAEG----KSWTYQ----------EAKSFFSESVEMS-QSMNLK 513
+A L A+ G G K+W EA+ +V++ ++
Sbjct: 544 GVAGLEGGRPAAQGFGSPNGQKPRKTWKASSDIFPAELSTEAEKLLKAAVDLGVKTYGGN 603
Query: 514 ELQKLI--DKQSAMYPLGPT-------VALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIG 564
L +L+ DK + PT + Y V K+ E E +EV LGGLHVIG
Sbjct: 604 SLSELVAEDKIATAAEKAPTDDPVIQKLREAYQQVRKEYEAVTKQEQAEVVELGGLHVIG 663
Query: 565 TSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDM 624
T HESRR+DNQLRGRAGRQGDPGSTRF +SL+D + + F D L++ +EDM
Sbjct: 664 TERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDR--VAKLMNAFRVEEDM 721
Query: 625 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQ 684
PIE + R L G Q E YY+ IRK + E+DEV+ QR+ +Y R+ +L G +
Sbjct: 722 PIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RELKE 779
Query: 685 QIFQYMQAVVDEIIFGNVD 703
Q+ QY + +DEI+ +++
Sbjct: 780 QVIQYGERTMDEIVDAHIN 798
|
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) |
| >sp|Q3MB92|SECA_ANAVT Protein translocase subunit SecA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/733 (48%), Positives = 471/733 (64%), Gaps = 59/733 (8%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RHFDVQ++GG +LH G IAEMKTGEGKTLV+TL +YLNALTG+GVHV+TVNDYLA+RDA
Sbjct: 77 LRHFDVQMLGGVILHSGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVITVNDYLARRDA 136
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGLSVGLIQ M P ER+ NY CDITY NSE+GFDYLRDN+A + +V
Sbjct: 137 EWMGQVHRFLGLSVGLIQSSMTPSERQKNYECDITYVTNSEVGFDYLRDNMATSMADVVQ 196
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PF++ ++DEVDS+L+DE R PL+ISG+ + +Y AA++A L + HY V+ K
Sbjct: 197 R---PFNYCVIDEVDSILVDEARTPLIISGQVERPTEKYVQAAEIALTLQKDEHYEVDEK 253
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V LT+EG A AE L DL+D DPWA FV NA+KAKE + +DV YIVRNG+ +I+
Sbjct: 254 ARNVLLTDEGFAQAEELLGVTDLFDPEDPWAHFVFNAIKAKELFLKDVNYIVRNGEVVIV 313
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGRV RRWS+G+HQA+EAKE + IQ ++ +A ITYQ+LF LYPKL GMTGTAKT
Sbjct: 314 DEFTGRVLPGRRWSDGLHQAIEAKEHVDIQPETQTLATITYQNLFLLYPKLGGMTGTAKT 373
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE EF +++++ V +PTN R DL F GKW+ +E M LGRPVLVG+
Sbjct: 374 EEAEFERIYKLEVTIIPTNRIRRREDLSDLVFKKEIGKWQAIARECAEMHELGRPVLVGT 433
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SEYLS LL++QGIPH +LNARP+ REAE VAQAGR+ A+TI+TNMAGRGTDII
Sbjct: 434 TSVEKSEYLSQLLREQGIPHELLNARPENVEREAEIVAQAGRRGAVTIATNMAGRGTDII 493
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGN + +A+ + + + P++ ++ + + +AA L
Sbjct: 494 LGGNSEYMARLKLREYFM------------------PRI---VRPDDEDVFGVQRAAGLP 532
Query: 481 KYVGKAEG-------KSWT----------YQEAKSFFSESVEMS----QSMNLKELQKLI 519
G +G K+W +EA+ E+V+ + +L EL+
Sbjct: 533 TGHGAGQGFVPGKKVKTWKASPEIFPTQLSKEAEQLLKEAVDFAVREYGDRSLPELEAE- 591
Query: 520 DKQSAMYPLGPT-------VALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRR 572
DK + PT + Y + ++ E S E EV GGLHVIGT HESRR
Sbjct: 592 DKVAVAAEKAPTNDPVIQKLRDAYKRIKQEYEEFTSTEHDEVVSRGGLHVIGTERHESRR 651
Query: 573 IDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIV 632
IDNQLRGRAGRQGDPGSTRF +SL+D + + F D L+ ++DMPIE +
Sbjct: 652 IDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDR--VAGLMEAFNVEDDMPIESGMLT 709
Query: 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQA 692
R L G Q E YY+ IRK + E+DEV+ QR+ +Y R+ +L G + +Q+ +Y +
Sbjct: 710 RSLEGAQRKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--QDLKEQVIKYAEK 767
Query: 693 VVDEII--FGNVD 703
+DEI+ + NVD
Sbjct: 768 TMDEIVDYYINVD 780
|
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) |
| >sp|Q8YMS8|SECA_NOSS1 Protein translocase subunit SecA OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=secA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/733 (48%), Positives = 470/733 (64%), Gaps = 59/733 (8%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RHFDVQ++GG +LH G IAEMKTGEGKTLV+TL +YLNALTG+GVHV+TVNDYLA+RDA
Sbjct: 77 LRHFDVQMLGGVILHSGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVITVNDYLARRDA 136
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGLSVGLIQ M P ER+ NY CDITY NSE+GFDYLRDN+A + +V
Sbjct: 137 EWMGQVHRFLGLSVGLIQSSMTPSERQKNYECDITYVTNSEVGFDYLRDNMATSMADVVQ 196
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PF++ ++DEVDS+L+DE R PL+ISG+ + +Y AA++A L + HY V+ K
Sbjct: 197 R---PFNYCVIDEVDSILVDEARTPLIISGQVERPTEKYVQAAEIALTLQKDEHYDVDEK 253
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V LT+EG A AE L DL+D DPWA FV NA+KAKE + +DV YIVRNG+ +I+
Sbjct: 254 ARNVLLTDEGFAQAEELLGVTDLFDPEDPWAHFVFNAIKAKELFLKDVNYIVRNGEVVIV 313
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGRV RRWS+G+HQA+EAKE + IQ ++ +A ITYQ+LF LYPKL GMTGTAKT
Sbjct: 314 DEFTGRVLPGRRWSDGLHQAIEAKEHVDIQPETQTLATITYQNLFLLYPKLGGMTGTAKT 373
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE EF +++++ V +PTN R DL F GKW+ +E M LGRPVLVG+
Sbjct: 374 EEAEFERIYKLEVTIIPTNRIRRREDLSDLVFKKEIGKWQAIARECAEMHELGRPVLVGT 433
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SEYLS LL++QGIPH +LNARP+ REAE VAQAGR+ A+TI+TNMAGRGTDII
Sbjct: 434 TSVEKSEYLSQLLREQGIPHELLNARPENVEREAEIVAQAGRRGAVTIATNMAGRGTDII 493
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGN + +A+ + + + P++ ++ + + +AA L
Sbjct: 494 LGGNSEYMARLKLREYFM------------------PRI---VRPDDEDVFGVQRAAGLP 532
Query: 481 KYVGKAEG-------KSWT----------YQEAKSFFSESVEMS----QSMNLKELQKLI 519
G +G K+W +EA+ E+V+ + +L EL+
Sbjct: 533 TGHGAGQGFVPGKKVKTWKASPEIFPTQLSKEAEQLLKEAVDFAVREYGDRSLPELEAE- 591
Query: 520 DKQSAMYPLGPT-------VALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRR 572
DK + PT + Y + + E S E EV GGLHVIGT HESRR
Sbjct: 592 DKVAVAAEKAPTDDSVIQKLRDAYNRIKHEYEEFTSTEHDEVVGRGGLHVIGTERHESRR 651
Query: 573 IDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIV 632
IDNQLRGRAGRQGDPGSTRF +SL+D + + F D L+ ++DMPIE +
Sbjct: 652 IDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDR--VAGLMEAFNVEDDMPIESGMLT 709
Query: 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQA 692
R L G Q E YY+ IRK + E+DEV+ QR+ +Y R+ +L G + +Q+ +Y +
Sbjct: 710 RSLEGAQRKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--QDLKEQVIKYAEK 767
Query: 693 VVDEII--FGNVD 703
+DEI+ + NVD
Sbjct: 768 TMDEIVDYYINVD 780
|
Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 711 | ||||||
| 224062991 | 1053 | predicted protein [Populus trichocarpa] | 0.992 | 0.670 | 0.885 | 0.0 | |
| 302141769 | 1067 | unnamed protein product [Vitis vinifera] | 0.992 | 0.661 | 0.886 | 0.0 | |
| 359492369 | 1817 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.388 | 0.886 | 0.0 | |
| 449457678 | 1057 | PREDICTED: protein translocase subunit S | 0.992 | 0.667 | 0.879 | 0.0 | |
| 255558580 | 1794 | F-box and wd40 domain protein, putative | 0.992 | 0.393 | 0.878 | 0.0 | |
| 356518567 | 1815 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.388 | 0.862 | 0.0 | |
| 334182752 | 1058 | preprotein translocase secA-like protein | 0.992 | 0.667 | 0.844 | 0.0 | |
| 240254134 | 1051 | preprotein translocase secA-like protein | 0.992 | 0.671 | 0.844 | 0.0 | |
| 334182750 | 1805 | preprotein translocase secA-like protein | 0.992 | 0.391 | 0.844 | 0.0 | |
| 297850596 | 1579 | preprotein translocase secA family prote | 0.992 | 0.447 | 0.839 | 0.0 |
| >gi|224062991|ref|XP_002300961.1| predicted protein [Populus trichocarpa] gi|222842687|gb|EEE80234.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1300 bits (3364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/706 (88%), Positives = 662/706 (93%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 145 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 204
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQ+GM +ERRSNYRCDITYTNNSELGFDYLRDNLA NSEQLVM
Sbjct: 205 EWMGRVHRFLGLSVGLIQKGMASKERRSNYRCDITYTNNSELGFDYLRDNLAGNSEQLVM 264
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+KD ARYPVAAKVAELL++G+HY+VELK
Sbjct: 265 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANKDAARYPVAAKVAELLIRGIHYSVELK 324
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+NSVELTEEGI LAEMALET DLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII
Sbjct: 325 DNSVELTEEGILLAEMALETKDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 384
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 385 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 444
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQ+PVIEVPTNLPNIR DLPIQ+FA+ARGKWEY RQEVE MF+ GRPVLVG+
Sbjct: 445 EEKEFLKMFQVPVIEVPTNLPNIRKDLPIQAFASARGKWEYVRQEVEYMFKQGRPVLVGT 504
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLSDLLK+ IPHNVLNARPKYA REAE VAQAGRK+AITISTNMAGRGTDII
Sbjct: 505 TSVENSEYLSDLLKEWRIPHNVLNARPKYATREAEIVAQAGRKHAITISTNMAGRGTDII 564
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLAK+IIE+R+L LT+EALN E+D + S KVLSEIK+GS S ALLAK AL+A
Sbjct: 565 LGGNPKMLAKEIIENRVLPFLTQEALNAEIDHEIFSQKVLSEIKVGSISSALLAKTALMA 624
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYVGK EGKSWTYQEAK S+SVEMS SM+ KELQ+L ++QS MYPLGPT++L YLSVL
Sbjct: 625 KYVGKGEGKSWTYQEAKLIVSDSVEMSHSMDAKELQQLANEQSEMYPLGPTISLAYLSVL 684
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCEVHC NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 685 KDCEVHCFNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 744
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDE +PIEGDAIV QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 745 FQKFNFDTEWAVRLISKITNDETIPIEGDAIVNQLLSLQINAEKYFFGIRKSLVEFDEVL 804
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ ILTG NESCSQ +FQYMQAVVDEI+FGN DPLK
Sbjct: 805 EVQRKHVYDLRQLILTGDNESCSQHVFQYMQAVVDEIVFGNADPLK 850
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141769|emb|CBI18972.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1295 bits (3350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/706 (88%), Positives = 663/706 (93%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 155 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 214
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EERRSNY CDITYTNNSELGFDYLRDNLA S QLVM
Sbjct: 215 EWMGRVHRFLGLSVGLIQRGMTSEERRSNYGCDITYTNNSELGFDYLRDNLAGTSGQLVM 274
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD ARYPVAAK+AELL++GLHY VELK
Sbjct: 275 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKIAELLIRGLHYNVELK 334
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+NSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR+VQYIVRNGKALII
Sbjct: 335 DNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRNVQYIVRNGKALII 394
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 395 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 454
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQMPVIEVP NLPNIR DLPIQ+FATARGKWE R+EVE MFR GRPVLVG+
Sbjct: 455 EEKEFLKMFQMPVIEVPPNLPNIRKDLPIQAFATARGKWENVREEVEYMFRQGRPVLVGT 514
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLSDLLK++ IPHNVLNARPKYAAREAE VAQAGRK+AITISTNMAGRGTDII
Sbjct: 515 TSVENSEYLSDLLKERKIPHNVLNARPKYAAREAEIVAQAGRKFAITISTNMAGRGTDII 574
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLAK++IED LL LT+EA NVEVD + +S KVLS+IK+GS+SLALLAK AL+A
Sbjct: 575 LGGNPKMLAKEVIEDSLLSFLTQEAPNVEVDGEPTSQKVLSKIKIGSASLALLAKTALMA 634
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYV K EGKSWTYQ+AKS SESVEMSQS++ KEL+KL ++QS MYPLGPT+AL YLSVL
Sbjct: 635 KYVSKGEGKSWTYQKAKSMISESVEMSQSIDWKELEKLANEQSEMYPLGPTIALAYLSVL 694
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 695 KDCEAHCLSEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 754
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGDAIV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 755 FQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVL 814
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ ILTG ESCSQ +FQYMQAVVDEI+FGNV+ LK
Sbjct: 815 EVQRKHVYDLRQLILTGDIESCSQHVFQYMQAVVDEIVFGNVNALK 860
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492369|ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1290 bits (3339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/706 (88%), Positives = 663/706 (93%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 905 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 964
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EERRSNY CDITYTNNSELGFDYLRDNLA S QLVM
Sbjct: 965 EWMGRVHRFLGLSVGLIQRGMTSEERRSNYGCDITYTNNSELGFDYLRDNLAGTSGQLVM 1024
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD ARYPVAAK+AELL++GLHY VELK
Sbjct: 1025 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKIAELLIRGLHYNVELK 1084
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+NSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR+VQYIVRNGKALII
Sbjct: 1085 DNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRNVQYIVRNGKALII 1144
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 1145 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 1204
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQMPVIEVP NLPNIR DLPIQ+FATARGKWE R+EVE MFR GRPVLVG+
Sbjct: 1205 EEKEFLKMFQMPVIEVPPNLPNIRKDLPIQAFATARGKWENVREEVEYMFRQGRPVLVGT 1264
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLSDLLK++ IPHNVLNARPKYAAREAE VAQAGRK+AITISTNMAGRGTDII
Sbjct: 1265 TSVENSEYLSDLLKERKIPHNVLNARPKYAAREAEIVAQAGRKFAITISTNMAGRGTDII 1324
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLAK++IED LL LT+EA NVEVD + +S KVLS+IK+GS+SLALLAK AL+A
Sbjct: 1325 LGGNPKMLAKEVIEDSLLSFLTQEAPNVEVDGEPTSQKVLSKIKIGSASLALLAKTALMA 1384
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYV K EGKSWTYQ+AKS SESVEMSQS++ KEL+KL ++QS MYPLGPT+AL YLSVL
Sbjct: 1385 KYVSKGEGKSWTYQKAKSMISESVEMSQSIDWKELEKLANEQSEMYPLGPTIALAYLSVL 1444
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 1445 KDCEAHCLSEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 1504
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGDAIV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 1505 FQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVL 1564
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ ILTG ESCSQ +FQYMQAVVDEI+FGNV+ LK
Sbjct: 1565 EVQRKHVYDLRQLILTGDIESCSQHVFQYMQAVVDEIVFGNVNALK 1610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457678|ref|XP_004146575.1| PREDICTED: protein translocase subunit SECA2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1290 bits (3338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/706 (87%), Positives = 660/706 (93%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNAL GEGVHVVTVNDYLAQRDA
Sbjct: 146 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALPGEGVHVVTVNDYLAQRDA 205
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM +ERRSNYRCDITYTNNSELGFDYLRDNLA N QLVM
Sbjct: 206 EWMGRVHRFLGLSVGLIQRGMTAKERRSNYRCDITYTNNSELGFDYLRDNLAGNDGQLVM 265
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD RYPVAAKVAELLV+G+HY VELK
Sbjct: 266 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAGRYPVAAKVAELLVKGVHYNVELK 325
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+NSVELTEEGIA+AE+ALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII
Sbjct: 326 DNSVELTEEGIAMAEIALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 385
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV+VAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 386 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVIVAQITYQSLFKLYPKLSGMTGTAKT 445
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQ PVIEVPTNLPNIR DLPIQ+FATARGKWEYARQEVE MFR GRPVLVG+
Sbjct: 446 EEKEFLKMFQTPVIEVPTNLPNIRKDLPIQAFATARGKWEYARQEVEYMFRQGRPVLVGT 505
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLSDLLK++ IPHNVLNARPKYAAREAETVAQAGRK+AITISTNMAGRGTDII
Sbjct: 506 TSVENSEYLSDLLKERKIPHNVLNARPKYAAREAETVAQAGRKHAITISTNMAGRGTDII 565
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLAK+IIED LL LT+E+ + E+D + KVLS+I +GSSSLALLAK AL+A
Sbjct: 566 LGGNPKMLAKEIIEDSLLSFLTKESPDYEIDGEELPRKVLSKINVGSSSLALLAKTALMA 625
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYV K EG++WTY+EAKS ESVEMSQSM+ KEL++L D+Q YPLGPTVAL YLSVL
Sbjct: 626 KYVCKNEGRNWTYKEAKSIILESVEMSQSMSFKELERLADEQIETYPLGPTVALAYLSVL 685
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
+DCEVHCS EG+EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 686 EDCEVHCSKEGAEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 745
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LISRITNDED+PIEGDAIV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 746 FQKFNFDTEWAVRLISRITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVL 805
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVY+LRQSILTG NESC+Q IFQYMQAVVDEI+F +VDP K
Sbjct: 806 EVQRKHVYNLRQSILTGNNESCTQHIFQYMQAVVDEIVFSHVDPKK 851
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558580|ref|XP_002520315.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223540534|gb|EEF42101.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1289 bits (3336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/706 (87%), Positives = 662/706 (93%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA RDA
Sbjct: 835 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAHRDA 894
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
+WM RVHRFLGLSVGLIQ+GM +ERRSNYRCDITYTNNSELGFDYLRDNLA NSEQLVM
Sbjct: 895 DWMGRVHRFLGLSVGLIQKGMTAKERRSNYRCDITYTNNSELGFDYLRDNLAGNSEQLVM 954
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+KD ARYPVAAKVAELLV+GLHY VELK
Sbjct: 955 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANKDAARYPVAAKVAELLVRGLHYNVELK 1014
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+NSVELTEEGIAL+EMALETNDLWDENDPWARFVMNALKAKEFYR+DVQYIVRNGKALII
Sbjct: 1015 DNSVELTEEGIALSEMALETNDLWDENDPWARFVMNALKAKEFYRQDVQYIVRNGKALII 1074
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 1075 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 1134
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQMPVIEVPTNLPNIR DL IQ+FATARGKWEY RQE+E MFR GRPVLVG+
Sbjct: 1135 EEKEFLKMFQMPVIEVPTNLPNIRKDLTIQAFATARGKWEYVRQEIECMFRQGRPVLVGT 1194
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLSDLLKQ IPHNVLNARPKYAAREAE +AQAGRKYAITISTNMAGRGTDII
Sbjct: 1195 TSVENSEYLSDLLKQWKIPHNVLNARPKYAAREAEIIAQAGRKYAITISTNMAGRGTDII 1254
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLAK+I+ED LL LTREA + E D +T S KV+S+IK+GS+SLALLAK AL+A
Sbjct: 1255 LGGNPKMLAKEIVEDSLLSFLTREAPDAEADGETISEKVMSKIKVGSTSLALLAKTALMA 1314
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYVGK+EGKSWTYQEA+ S+S+EMSQ+M++ +LQK ++QS MYPLGPT+ALTYLSVL
Sbjct: 1315 KYVGKSEGKSWTYQEARLMISDSLEMSQAMDVNQLQKAANEQSEMYPLGPTIALTYLSVL 1374
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
K+CEVHC NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF+VSLQDEM
Sbjct: 1375 KECEVHCFNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFIVSLQDEM 1434
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LISRI+NDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 1435 FQKFNFDTEWAVKLISRISNDEDIPIEGDVIVKQLLALQINAEKYFFGIRKSLVEFDEVL 1494
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYD+RQ ILTG ESCSQ I QYMQAVVDEI+FGN DP K
Sbjct: 1495 EVQRKHVYDVRQLILTGDEESCSQHISQYMQAVVDEIVFGNADPSK 1540
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518567|ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793437 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/706 (86%), Positives = 655/706 (92%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALT EGVHVVTVNDYLAQRDA
Sbjct: 903 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDA 962
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EERR NY DITYTNNSELGFDYLRDNLA NSEQLVM
Sbjct: 963 EWMGRVHRFLGLSVGLIQRGMNSEERRLNYGRDITYTNNSELGFDYLRDNLAGNSEQLVM 1022
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD AR+PVAAKVAELL+QG+HY VELK
Sbjct: 1023 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKVELK 1082
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+NSVELTEEGI LAEMALETNDLWDENDPWARFVMNA+KAKEFYRRDVQY+VR+GKALII
Sbjct: 1083 DNSVELTEEGIDLAEMALETNDLWDENDPWARFVMNAIKAKEFYRRDVQYMVRDGKALII 1142
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 1143 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 1202
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQMPVIEVPTNLPNIR DLPIQ+FATARGKWE R+EVE MFR GRPVLVG+
Sbjct: 1203 EEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGT 1262
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSE LS LL++ IPHNVLNARPKYAA+EAE VAQAGRK+AIT+STNMAGRGTDII
Sbjct: 1263 TSVENSELLSGLLREWNIPHNVLNARPKYAAKEAEIVAQAGRKHAITLSTNMAGRGTDII 1322
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLA++IIED LL LTRE NVE+ D+ S KVL ++K+GSSS+ALLAK L+A
Sbjct: 1323 LGGNPKMLAREIIEDSLLSFLTREDPNVELADEAISQKVLPKVKVGSSSMALLAKTTLMA 1382
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYV K+EGKSWTYQ+AKSF E+VEMS S +L+ L+KL +++S +YPLGPTVAL YLSVL
Sbjct: 1383 KYVSKSEGKSWTYQKAKSFILEAVEMSLSYSLEGLEKLANEESEIYPLGPTVALAYLSVL 1442
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 1443 KDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 1502
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGDAIV+QLL LQI+AEK++FGIRK+LVEFDEVL
Sbjct: 1503 FQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVL 1562
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ ILTG +ESCSQ IFQYMQAVVDEI+F N+DPLK
Sbjct: 1563 EVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNIDPLK 1608
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182752|ref|NP_001185059.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|363805541|sp|D8WUA4.1|SECA2_ARATH RecName: Full=Protein translocase subunit SECA2, chloroplastic; Flags: Precursor gi|298108793|gb|ADI56650.1| plastid SecA2 [Arabidopsis thaliana] gi|332192013|gb|AEE30134.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1243 bits (3216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/706 (84%), Positives = 649/706 (91%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGG VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 146 MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 205
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 206 EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 265
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+ HY VELK
Sbjct: 266 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 325
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
NSVELTEEGI+LAEMALET DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 326 ENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 385
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 386 NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 445
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF GRPVLVG+
Sbjct: 446 EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 505
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 506 TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 565
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLA++IIED +L LT E L +DD S KVLS+IK+G SSLALLA+A+L+A
Sbjct: 566 LGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPSSLALLARASLMA 625
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYVGK+E KSWT ++AKS +ES+E SQ+M+ ELQ LI++QS MYPLGP +AL YLSVL
Sbjct: 626 KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVL 685
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 686 KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 745
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 746 FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 805
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P K
Sbjct: 806 EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQK 851
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254134|ref|NP_173584.5| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192011|gb|AEE30132.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1242 bits (3214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/706 (84%), Positives = 649/706 (91%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGG VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 146 MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 205
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 206 EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 265
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+ HY VELK
Sbjct: 266 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 325
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
NSVELTEEGI+LAEMALET DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 326 ENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 385
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 386 NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 445
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF GRPVLVG+
Sbjct: 446 EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 505
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 506 TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 565
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLA++IIED +L LT E L +DD S KVLS+IK+G SSLALLA+A+L+A
Sbjct: 566 LGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPSSLALLARASLMA 625
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYVGK+E KSWT ++AKS +ES+E SQ+M+ ELQ LI++QS MYPLGP +AL YLSVL
Sbjct: 626 KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVL 685
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 686 KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 745
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 746 FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 805
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P K
Sbjct: 806 EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQK 851
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182750|ref|NP_001185058.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192012|gb|AEE30133.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/706 (84%), Positives = 649/706 (91%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGG VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 893 MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 952
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 953 EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 1012
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+ HY VELK
Sbjct: 1013 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 1072
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
NSVELTEEGI+LAEMALET DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 1073 ENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 1132
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 1133 NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 1192
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF GRPVLVG+
Sbjct: 1193 EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 1252
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 1253 TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 1312
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLA++IIED +L LT E L +DD S KVLS+IK+G SSLALLA+A+L+A
Sbjct: 1313 LGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPSSLALLARASLMA 1372
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYVGK+E KSWT ++AKS +ES+E SQ+M+ ELQ LI++QS MYPLGP +AL YLSVL
Sbjct: 1373 KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVL 1432
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 1433 KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 1492
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 1493 FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 1552
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P K
Sbjct: 1553 EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQK 1598
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850596|ref|XP_002893179.1| preprotein translocase secA family protein [Arabidopsis lyrata subsp. lyrata] gi|297339021|gb|EFH69438.1| preprotein translocase secA family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/706 (83%), Positives = 649/706 (91%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQIIGG VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 794 MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 853
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGLSVGLIQRGM EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 854 EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 913
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+ HY VELK
Sbjct: 914 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 973
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
NSVELTEEGI+LAEMALET+DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 974 ENSVELTEEGISLAEMALETSDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 1033
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 1034 NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 1093
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF GRPVLVG+
Sbjct: 1094 EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 1153
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 1154 TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 1213
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
LGGNPKMLA++IIED +L LT E L +DD S KVLS+IK+G SSLA LA+A+L+A
Sbjct: 1214 LGGNPKMLAREIIEDSILSYLTSEVLADNIDDNELSQKVLSKIKVGPSSLASLARASLMA 1273
Query: 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
KYVGK+E KSWT ++AKS +ES+E SQ+M+ +LQ L+++QS MYPLGP +AL YLSVL
Sbjct: 1274 KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMKLQNLVNEQSEMYPLGPAIALAYLSVL 1333
Query: 541 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 1334 KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 1393
Query: 601 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 1394 FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 1453
Query: 661 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706
EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P K
Sbjct: 1454 EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNANPQK 1499
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 711 | ||||||
| TIGR_CMR|CHY_0162 | 874 | CHY_0162 "preprotein transloca | 0.596 | 0.485 | 0.548 | 1e-152 | |
| UNIPROTKB|P0A5Y8 | 949 | secA1 "Protein translocase sub | 0.604 | 0.453 | 0.518 | 7.8e-144 | |
| TIGR_CMR|DET_0434 | 952 | DET_0434 "preprotein transloca | 0.476 | 0.356 | 0.478 | 2.7e-137 | |
| TIGR_CMR|BA_5421 | 835 | BA_5421 "preprotein translocas | 0.601 | 0.512 | 0.502 | 3.5e-137 | |
| TIGR_CMR|GSU_2050 | 897 | GSU_2050 "preprotein transloca | 0.597 | 0.473 | 0.503 | 1.9e-136 | |
| TIGR_CMR|CBU_0147 | 913 | CBU_0147 "preprotein transloca | 0.348 | 0.271 | 0.449 | 3.8e-130 | |
| UNIPROTKB|Q7WWK0 | 838 | secA "Protein translocase subu | 0.580 | 0.492 | 0.473 | 6.9e-130 | |
| TIGR_CMR|ECH_1149 | 862 | ECH_1149 "preprotein transloca | 0.623 | 0.513 | 0.475 | 1.4e-129 | |
| TIGR_CMR|APH_1178 | 873 | APH_1178 "preprotein transloca | 0.594 | 0.484 | 0.507 | 3e-129 | |
| TIGR_CMR|NSE_0232 | 804 | NSE_0232 "preprotein transloca | 0.587 | 0.519 | 0.506 | 1.5e-127 |
| TIGR_CMR|CHY_0162 CHY_0162 "preprotein translocase, SecA subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 1.0e-152, Sum P(2) = 1.0e-152
Identities = 236/430 (54%), Positives = 319/430 (74%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VLH+G IAEMKTGEGKTLV+TL AYLNALTG GVH+VTVNDYLA+RDA
Sbjct: 79 MRHFDVQLMGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGRGVHIVTVNDYLARRDA 138
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++++FLGLSVGL+ GM E+++ Y DITY N+E GFDYLRDN+A + +Q+V
Sbjct: 139 EWMGKIYKFLGLSVGLVVHGMDYAEKKAAYLADITYGTNNEFGFDYLRDNMAIHPDQVVQ 198
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R ++AI+DEVDS+LIDE R PL+ISGEA K Y AK+ + LV G YTV+ K
Sbjct: 199 R---ELYYAIIDEVDSILIDEARTPLIISGEAEKSTDLYYTFAKIVKQLVPGEDYTVDEK 255
Query: 181 NNSVELTEEGIALAEMALETNDLW-DENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
++V TE GI E L +L+ DE+ + ALKA+ +RD Y+V++G+ +I
Sbjct: 256 AHAVMPTEAGIHKVEKMLGIQNLYADEHMELTHHLNAALKAQALMKRDRDYVVKDGQVII 315
Query: 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
++E TGR+ RR+S+G+HQA+EAKEG+KI+ ++ +A IT+Q+ F++Y KL+GMTGTA+
Sbjct: 316 VDEFTGRLMFGRRYSDGLHQAIEAKEGVKIEQETQTLATITFQNYFRMYEKLAGMTGTAE 375
Query: 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
TEE EF K++ + V+ +PT+ P IR DLP F T + K++ +EV + G+P+L+G
Sbjct: 376 TEENEFRKIYNLSVVVIPTHKPMIRKDLPDVIFKTEKAKFKAIVEEVARRHQTGQPILIG 435
Query: 360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
+ S+E SE LS++LK++GIPH VLNA KY +EAE VAQAGR A+TI+TNMAGRGTDI
Sbjct: 436 TISIEKSEMLSEMLKKRGIPHQVLNA--KYHEKEAEIVAQAGRLGAVTIATNMAGRGTDI 493
Query: 420 ILGGNPKMLA 429
+LGGNP+ LA
Sbjct: 494 LLGGNPEFLA 503
|
|
| UNIPROTKB|P0A5Y8 secA1 "Protein translocase subunit SecA 1" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 1119 (399.0 bits), Expect = 7.8e-144, Sum P(2) = 7.8e-144
Identities = 226/436 (51%), Positives = 305/436 (69%)
Query: 2 RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61
R FDVQ++G A LH G++AEMKTGEGKTL L AYLNAL G GVH+VTVNDYLA+RD+E
Sbjct: 81 RPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSE 140
Query: 62 WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR 121
WM RVHRFLGL VG+I M P+ERR Y DITY N+E GFDYLRDN+A + + LV R
Sbjct: 141 WMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR 200
Query: 122 WPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKN 181
H+AIVDEVDS+LIDE R PL+ISG A Y A++A L+ + +HY V+L+
Sbjct: 201 G---HHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRK 257
Query: 182 NSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V + E+G+ E L ++L++ N P ++ NALKAKE + RD YIVR+G+ LI+
Sbjct: 258 RTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIV 317
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGRV RR++EG+HQA+EAKE ++I+A++ +A IT Q+ F+LY KL+GMTGTA+T
Sbjct: 318 DEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQT 377
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
E E +++++ V+ +PTN+P IR D + T K+ +V + G+PVL+G+
Sbjct: 378 EAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGT 437
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SEYLS ++ IPHNVLNA KY +EA +A AGR+ +T++TNMAGRGTDI+
Sbjct: 438 TSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAVAGRRGGVTVATNMAGRGTDIV 495
Query: 421 LGGNPKMLAKKIIEDR 436
LGGN L + + +R
Sbjct: 496 LGGNVDFLTDQRLRER 511
|
|
| TIGR_CMR|DET_0434 DET_0434 "preprotein translocase, SecA subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 2.7e-137, Sum P(3) = 2.7e-137
Identities = 169/353 (47%), Positives = 233/353 (66%)
Query: 83 PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142
P R+ Y+ DITY ++E GFDYLRDNL + Q V R ++AIVDE+D++LIDE
Sbjct: 238 PISRQEAYKADITYGTSTEFGFDYLRDNLRPDLAQCVQR---EMNYAIVDEIDNLLIDEA 294
Query: 143 RNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-- 200
R PL+IS ++ Y V A++A L G Y + K+ + ELTE+G A E L
Sbjct: 295 RTPLIISAPDTEAGKLYEVFARLAPRLAAGKDYEINEKDRNAELTEDGWANVEKLLSREG 354
Query: 201 ----NDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSE 255
+ L+D +N P R + NAL AKEFY++D QY+V+ + +II+E TGR+ RR+SE
Sbjct: 355 VMKGSSLYDPQNAPLIRHLRNALSAKEFYKKDHQYVVKENEVIIIDEFTGRMMLGRRYSE 414
Query: 256 GIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIE 315
G+HQA+EAKE +KIQ +S A +T Q+LF++Y KL GMTGTA TE +EF K++++ V+
Sbjct: 415 GLHQAIEAKEHVKIQQESKTYATVTIQNLFRMYRKLCGMTGTAATEAEEFSKIYKLEVVI 474
Query: 316 VPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ 375
+PTN P IR D Q + K++ E+ M LGRPVLVG+ S+ENSE LS++LK+
Sbjct: 475 IPTNKPAIREDYGDQIYKDQSAKFKAVVNEINEMRNLGRPVLVGTVSIENSEMLSNMLKR 534
Query: 376 QGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGN--PK 426
QGI H VLNA K +EA+ VA+AG+ A+T++TNMAGRG DI+LGG PK
Sbjct: 535 QGIEHKVLNA--KQHEKEAQVVAEAGKPGAVTVATNMAGRGVDILLGGKEPPK 585
|
|
| TIGR_CMR|BA_5421 BA_5421 "preprotein translocase, SecA subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1085 (387.0 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 218/434 (50%), Positives = 302/434 (69%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MR + VQ++GG LH+G+I+EMKTGEGKTL STL YLNALTG+GVHVVTVN+YLAQRDA
Sbjct: 79 MRPYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDA 138
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
M ++H FLGL+VG+ M EE++ Y DITY+ N+ELGFDYLRDN+ EQ V
Sbjct: 139 NEMGQLHEFLGLTVGINLNSMSREEKQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQ 198
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R P HFAI+DEVDS+L+DE R PL+ISG+A K Y A L Y+ ++K
Sbjct: 199 R---PLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTLENEKDYSFDVK 255
Query: 181 NNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
+V LTE+GI AE A +L+D ++ + AL+A RD Y+V+ G+ +I
Sbjct: 256 TKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQALRAHVVMHRDTDYVVQEGEIVI 315
Query: 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
+++ TGR+ + RR+SEG+HQA+EAKEG++IQ +S+ +A IT+Q+ F++Y KLSGMTGTAK
Sbjct: 316 VDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAK 375
Query: 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
TEE+EF ++ M VI +PTN P IR D F + +GK+ +++ + + G+PVLVG
Sbjct: 376 TEEEEFRNIYNMNVIVIPTNKPIIRDDRADLIFKSMKGKFNAVVEDIVNRHKQGQPVLVG 435
Query: 360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
+ ++E SE +S +L ++G+ HN+LNA K AREA+ +A+AG K A+TI+TNMAGRGTDI
Sbjct: 436 TVAIETSELISKMLTRKGVRHNILNA--KNHAREADIIAEAGMKGAVTIATNMAGRGTDI 493
Query: 420 ILGGNPKMLAKKII 433
LG + K + +I
Sbjct: 494 KLGDDIKNIGLAVI 507
|
|
| TIGR_CMR|GSU_2050 GSU_2050 "preprotein translocase, SecA subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 227/451 (50%), Positives = 302/451 (66%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG VLH G IAEMKTGEGKTLV+TL AYLNALTG GVHVVTVNDYLA+RD+
Sbjct: 81 MRHFDVQLIGGMVLHQGKIAEMKTGEGKTLVATLPAYLNALTGRGVHVVTVNDYLARRDS 140
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM R++RFLGL+VG+I G+ +ERR+ Y DITY N+E GFDYLRDN+ E V
Sbjct: 141 EWMGRLYRFLGLTVGVIVHGIDDDERRAAYAADITYGTNNEFGFDYLRDNMKFALEDYVQ 200
Query: 121 R-----WPKPFHFAIVDEVDSVLIDEGRN--------------PLLISGEASKDVARYPV 161
R ++DE + LI G P L GE K+V +
Sbjct: 201 RPFFFSIVDEVDSILIDEARTPLIISGPTEDSTDKYYIIDRIIPHLKKGEV-KEVEANTL 259
Query: 162 AAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKA 220
+ K + G +TV+ K S LTEEG+A E L+ ++L+D V AL+A
Sbjct: 260 SGK--RKVYTG-DFTVDEKARSSSLTEEGVAKVEKLLKIDNLYDPRHMEILHHVNQALRA 316
Query: 221 KEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQIT 280
+RRDV Y+V++G+ +I++E TGR+ RRWS+G+HQA+EAKEG++I+ ++ +A IT
Sbjct: 317 HALFRRDVDYVVKDGEVIIVDEFTGRLMPGRRWSDGLHQAIEAKEGVEIENENQTLATIT 376
Query: 281 YQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWE 340
+Q+ F++Y KLSGMTGTA TE +EF K++++ V +PTN P +R D P + T R K+
Sbjct: 377 FQNYFRMYEKLSGMTGTADTEAEEFHKIYKLEVTVIPTNRPLLRPDFPDVIYKTEREKFN 436
Query: 341 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA 400
+E++ G+P LVG+ S+E SE L+++L++QGIPHNVLNA K REAE VAQA
Sbjct: 437 AVIEEIKGCHEKGQPTLVGTISIEKSEVLAEILRKQGIPHNVLNA--KQHEREAEIVAQA 494
Query: 401 GRKYAITISTNMAGRGTDIILGGNPKMLAKK 431
GRK +TI+TNMAGRGTDI+LGGNP+ LAK+
Sbjct: 495 GRKGMVTIATNMAGRGTDILLGGNPEGLAKQ 525
|
|
| TIGR_CMR|CBU_0147 CBU_0147 "preprotein translocase, SecA subunit" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 3.8e-130, Sum P(3) = 3.8e-130
Identities = 116/258 (44%), Positives = 167/258 (64%)
Query: 175 YTVELKNNSVELTEEG------IALAEMALETND-LWD-ENDPWARFVMNALKAKEFYRR 226
YT++ KN LTE+G + + + ++ + L+D N +V AL+A + R
Sbjct: 268 YTLDEKNRQAYLTEQGHRTIEALMIKQGLMQAGESLYDVSNISLMHYVYAALRAHTLFYR 327
Query: 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFK 286
DV YIV+N + +I++E TGR+ RRWS+G+HQAVEAKEG IQ ++ +A IT+Q+ F+
Sbjct: 328 DVHYIVKNNEVIIVDEHTGRLMPGRRWSDGLHQAVEAKEGATIQLENQTLATITFQNYFR 387
Query: 287 LYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEV 346
LY KLSGMT TA TE E K++ + V+ +PTN P IR D Q + TA K++ EV
Sbjct: 388 LYEKLSGMTATADTEAFELQKIYGLEVVVIPTNRPMIRRDESDQVYLTADAKFDAIVNEV 447
Query: 347 ESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAI 406
+ G+P+L+G+ S+E SE ++ LK+ I H +LNA K REA+ +A+AGR A+
Sbjct: 448 KKRHEKGQPLLIGTASIEASELVARFLKKANIKHEILNA--KNHEREAKIIAEAGRPGAV 505
Query: 407 TISTNMAGRGTDIILGGN 424
TI+TNMAGRGTDI+LGGN
Sbjct: 506 TIATNMAGRGTDIVLGGN 523
|
|
| UNIPROTKB|Q7WWK0 secA "Protein translocase subunit SecA" [Streptococcus parasanguinis (taxid:1318)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 6.9e-130, Sum P(2) = 6.9e-130
Identities = 200/422 (47%), Positives = 293/422 (69%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
+ VQ++GG VLH G + EM+TGEGKTL +T+ YLNAL+G+GVHVVTVN+YL +RDA M
Sbjct: 82 YKVQVMGGIVLHHGDVPEMRTGEGKTLTATMPVYLNALSGKGVHVVTVNEYLTERDATEM 141
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ +LGLSVG+ P E++ Y CDITY+ NSE+GFDYLRDN+ +E +V R
Sbjct: 142 GELYSWLGLSVGINLAAKSPAEKKEAYLCDITYSTNSEIGFDYLRDNMVVRAENMVQR-- 199
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVAR-YPVAAKVAELLVQGLHYTVELKNN 182
P ++A+VDEVDS+LIDE R PL++SG+ + D ++ Y +A + L + Y +++ +
Sbjct: 200 -PLNYALVDEVDSILIDEARTPLIVSGQTASDTSQLYHMADAYVKTLTED-DYIIDVPSK 257
Query: 183 SVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIV-RNGKALII 240
++ L++ GI AE +L+D EN F+ NAL+A D+ Y+V + + LI+
Sbjct: 258 TIGLSDSGIDKAESYFNLENLYDIENVALTHFIDNALRANYIMILDIDYVVSEDQEILIV 317
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
++ TGR E RR+S+G+HQA+EAKEG+ +Q ++ A ITYQ+LF++Y KLSGMTGT KT
Sbjct: 318 DQFTGRTMEGRRYSDGLHQAIEAKEGVPVQEETKTSASITYQNLFRMYKKLSGMTGTGKT 377
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE+EF +++ + VI +PTN P R+D P + + + K++ ++V+S G+PVLVG+
Sbjct: 378 EEEEFREIYNIRVIPIPTNRPIARIDHPDLLYPSLKSKFKAVVEDVKSRHEKGQPVLVGT 437
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
+VE S+YLS LL Q G+PH VLNA+ Y +EA+ + AG++ A+TI+TNMAGRGTDI
Sbjct: 438 VAVETSDYLSQLLVQAGVPHEVLNAKNHY--KEAQIIMNAGQRGAVTIATNMAGRGTDIK 495
Query: 421 LG 422
LG
Sbjct: 496 LG 497
|
|
| TIGR_CMR|ECH_1149 ECH_1149 "preprotein translocase, SecA subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 1.4e-129, Sum P(2) = 1.4e-129
Identities = 220/463 (47%), Positives = 311/463 (67%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG VLH G I+EMKTGEGKTLV+TLAAYLNAL G+GVH+VTVNDYLA+RDA
Sbjct: 80 MRHFDVQLIGGIVLHKGMISEMKTGEGKTLVATLAAYLNALEGKGVHIVTVNDYLAKRDA 139
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++ LG++VG I ER++ Y CDI Y+ N+ LGFDYLRDN+ + +++V
Sbjct: 140 EWMGELYSALGITVGCILTETNDLERKNAYNCDILYSTNNNLGFDYLRDNMKFSRDEMVQ 199
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP-VAAKVAELLVQGLHYTVEL 179
R F++AIVDEVDS+LIDE R PL+ISG+ +D+ Y + + EL + Y +E
Sbjct: 200 RG---FNYAIVDEVDSILIDEARTPLIISGQVDQDIKMYKKIDNLIYELAEED--YELEE 254
Query: 180 KNNSVELTEEGIALAE-MALETN------DLWD-ENDPWARFVMNALKAKEFYRRDVQYI 231
KN ++ LTE GI E + ++ N L+D +N ++ AL+A + + D YI
Sbjct: 255 KNRNIFLTEAGITKIENLLIQHNLISSNTSLYDIDNIIIMHYITQALRAHKMFAVDKDYI 314
Query: 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKL 291
+++G +II+E TGR+ + RR+S+G+HQA+EAKE L I +++ +A T+Q+ F++Y KL
Sbjct: 315 IKDGNIVIIDEFTGRMMDGRRYSDGLHQALEAKEKLNINSENQTLASTTFQNYFRMYTKL 374
Query: 292 SGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFR 351
SGMTGTA+TE +EFL ++ + V+++PTN+P R+DL + T K+ + + +
Sbjct: 375 SGMTGTAETESEEFLGIYNLQVVQIPTNIPVQRIDLNDDIYCTEEEKFNSVIKFISECHK 434
Query: 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN 411
+PVLVG+ S+E SE LS LL + + H+VLNAR Y +EA +AQAG ITI+TN
Sbjct: 435 KLQPVLVGTVSIEKSEMLSKLLTKNKLKHSVLNAR--YHEQEAYIIAQAGIPGTITIATN 492
Query: 412 MAGRGTDIILGGNPKMLAKKIIEDRXXXXXTREALNVEVDDKT 454
MAGRGTDI LGGN KMLAK + + +EA+ ++ T
Sbjct: 493 MAGRGTDIQLGGNLKMLAKTALAN----ITDKEAIEIKYKQLT 531
|
|
| TIGR_CMR|APH_1178 APH_1178 "preprotein translocase, SecA subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 223/439 (50%), Positives = 300/439 (68%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG LH G IAEMKTGEGKTLV+TLAAYLNAL +GVHVVTVNDYLA+RD+
Sbjct: 82 MRHFDVQLIGGIALHRGMIAEMKTGEGKTLVATLAAYLNALESKGVHVVTVNDYLAERDS 141
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +++ LG+SVG I E R++ Y CDI Y+ N+ELGFDYLRDN+ + E +V
Sbjct: 142 EWMGKLYSALGISVGCITSSSSDEARKAAYNCDILYSTNNELGFDYLRDNMKFSRENMVQ 201
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY-PVAAKVAELLVQGLHYTVEL 179
R +++AIVDEVDS+LIDE R PL+ISG +D + Y V A V +L + Y ++
Sbjct: 202 RG---YNYAIVDEVDSILIDESRTPLIISGPVERDSSLYGKVDALVRDLEQED--YDIDE 256
Query: 180 KNNSVELTEEGIALAEMAL-------ETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYI 231
K+ + LTE+G E L E + L+ EN +V AL+A + Y D YI
Sbjct: 257 KSKTAFLTEDGALKVEQLLISHQLIPEGSSLYSAENIIMMHYVGQALRAHKLYFADKDYI 316
Query: 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKL 291
V+NG +II+E TGR+ + RR+S+G+HQA+EAKEG++I ++ +A T+Q+ F++Y +L
Sbjct: 317 VKNGSVVIIDEFTGRMMDGRRYSDGLHQALEAKEGVRINNENQTLASTTFQNYFRMYKRL 376
Query: 292 SGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFR 351
SGMTGTA+TE EFL + + V+++PTN+P RVDL + T K+E + +
Sbjct: 377 SGMTGTAETEADEFLGTYNLQVMQIPTNVPVQRVDLDDDIYCTEEEKYEAVIDFIIECHK 436
Query: 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN 411
+P LVG+ S+E SE LS LL +GI H+VLNAR Y +EA +AQAG+ A+TI+TN
Sbjct: 437 RKQPTLVGTISIEKSELLSKLLTMRGIKHSVLNAR--YHEKEAYIIAQAGKPGAVTIATN 494
Query: 412 MAGRGTDIILGGNPKMLAK 430
MAGRGTDI LGGNP+MLA+
Sbjct: 495 MAGRGTDIKLGGNPEMLAR 513
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| TIGR_CMR|NSE_0232 NSE_0232 "preprotein translocase, SecA subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
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Score = 1014 (362.0 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 219/432 (50%), Positives = 298/432 (68%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQI+GG VLH G I+EM TGEGKTLV+TLAAYLNAL+ +GVHVVTVNDYLA+RD
Sbjct: 81 MRHFDVQIMGGIVLHWGMISEMHTGEGKTLVATLAAYLNALSEKGVHVVTVNDYLARRDT 140
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM++++R LGL V I M ER Y+ DITY N+ELGFDYLRDN+ + ++V
Sbjct: 141 EWMKQIYRHLGLQVSCITSDMRDPERAHAYKADITYATNNELGFDYLRDNMKFSKGEMVQ 200
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R H+AIVDEVDS+LIDE R PL+ISG Y K+AE L L Y V+ K
Sbjct: 201 R---DLHYAIVDEVDSILIDEARTPLIISGVTDNASYLYASMNKLAEKLDSTL-YIVDEK 256
Query: 181 NNSVELTEEG------IALAEMALET-NDLWD-ENDPWARFVMNALKAKEFYRRDVQYIV 232
+V LTEEG + +AE +E+ + L++ +N + +LKA ++++ YIV
Sbjct: 257 TRTVSLTEEGQEAIEKLLMAEKFIESGSSLYEPQNLQLVHCLNQSLKAINLFQKNKDYIV 316
Query: 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLS 292
++G+ ++I+E TGR+ RR+SEG+HQA+EAKE LKIQ ++ +A IT+Q+ F++Y KLS
Sbjct: 317 QDGQIVLIDEFTGRMMHGRRYSEGLHQALEAKENLKIQNENQTLASITFQNYFRMYGKLS 376
Query: 293 GMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRL 352
GMTGTA TE +EF ++ + V+++P++LP RVD + +A+ + K+E +
Sbjct: 377 GMTGTAATEREEFSTIYGLEVVQIPSHLPVRRVDHDDEIYASKKEKYEAILALAKECHEK 436
Query: 353 GRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 412
+P+L+G+TS+ENSE LS LK+ + H+VLNA K A EAE +AQAG+ AITI+TNM
Sbjct: 437 LQPILIGTTSIENSEELSRELKKAKLKHSVLNA--KQHAFEAEIIAQAGKPGAITIATNM 494
Query: 413 AGRGTDIILGGN 424
AGRGTDI LGGN
Sbjct: 495 AGRGTDIQLGGN 506
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2JW99 | SECA_SYNJA | No assigned EC number | 0.5006 | 0.9578 | 0.7138 | yes | no |
| Q8DHU4 | SECA_THEEB | No assigned EC number | 0.5014 | 0.9690 | 0.7416 | yes | no |
| D8WUA4 | SECA2_ARATH | No assigned EC number | 0.8441 | 0.9929 | 0.6672 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00020721 | hypothetical protein (1053 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.VI.8.1 | SecY protein (430 aa) | • | • | • | • | 0.870 | ||||
 | gw1.XVIII.2978.1 | SecY protein (478 aa) | • | • | • | • | 0.829 | ||||
 | eugene3.29520003 | annotation not avaliable (742 aa) | • | 0.708 | |||||||
 | eugene3.00140246 | hypothetical protein (365 aa) | • | 0.693 | |||||||
 | eugene3.32010002 | annotation not avaliable (118 aa) | • | • | 0.679 | ||||||
 | gw1.2290.1.1 | Predicted protein (425 aa) | • | 0.639 | |||||||
 | grail3.3183000301 | Predicted protein (109 aa) | • | 0.620 | |||||||
 | fgenesh4_pg.C_scaffold_15407000001 | Predicted protein (325 aa) | • | 0.615 | |||||||
 | eugene3.135990001 | Predicted protein (278 aa) | • | 0.608 | |||||||
 | gw1.X.6706.1 | hypothetical protein (254 aa) | • | 0.600 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 711 | |||
| PRK12902 | 939 | PRK12902, secA, preprotein translocase subunit Sec | 0.0 | |
| CHL00122 | 870 | CHL00122, secA, preprotein translocase subunit Sec | 0.0 | |
| PRK12904 | 830 | PRK12904, PRK12904, preprotein translocase subunit | 0.0 | |
| TIGR00963 | 745 | TIGR00963, secA, preprotein translocase, SecA subu | 0.0 | |
| COG0653 | 822 | COG0653, SecA, Preprotein translocase subunit SecA | 0.0 | |
| PRK12906 | 796 | PRK12906, secA, preprotein translocase subunit Sec | 0.0 | |
| smart00957 | 380 | smart00957, SecA_DEAD, SecA DEAD-like domain | 0.0 | |
| PRK09200 | 790 | PRK09200, PRK09200, preprotein translocase subunit | 0.0 | |
| PRK12903 | 925 | PRK12903, secA, preprotein translocase subunit Sec | 1e-176 | |
| pfam07517 | 381 | pfam07517, SecA_DEAD, SecA DEAD-like domain | 1e-173 | |
| PRK12898 | 656 | PRK12898, secA, preprotein translocase subunit Sec | 1e-172 | |
| TIGR03714 | 762 | TIGR03714, secA2, accessory Sec system translocase | 1e-149 | |
| PRK13103 | 913 | PRK13103, secA, preprotein translocase subunit Sec | 1e-141 | |
| PRK12326 | 764 | PRK12326, PRK12326, preprotein translocase subunit | 1e-135 | |
| PRK13107 | 908 | PRK13107, PRK13107, preprotein translocase subunit | 1e-132 | |
| PRK13104 | 896 | PRK13104, secA, preprotein translocase subunit Sec | 1e-127 | |
| TIGR04221 | 762 | TIGR04221, SecA2_Mycobac, accessory Sec system tra | 1e-122 | |
| PRK12901 | 1112 | PRK12901, secA, preprotein translocase subunit Sec | 9e-75 | |
| PRK12900 | 1025 | PRK12900, secA, preprotein translocase subunit Sec | 4e-68 | |
| PRK12901 | 1112 | PRK12901, secA, preprotein translocase subunit Sec | 2e-65 | |
| PRK12900 | 1025 | PRK12900, secA, preprotein translocase subunit Sec | 9e-64 | |
| PRK12899 | 970 | PRK12899, secA, preprotein translocase subunit Sec | 5e-62 | |
| PRK12899 | 970 | PRK12899, secA, preprotein translocase subunit Sec | 1e-53 | |
| pfam01043 | 113 | pfam01043, SecA_PP_bind, SecA preprotein cross-lin | 5e-44 | |
| TIGR00963 | 745 | TIGR00963, secA, preprotein translocase, SecA subu | 3e-42 | |
| smart00958 | 114 | smart00958, SecA_PP_bind, SecA preprotein cross-li | 6e-40 | |
| PRK12904 | 830 | PRK12904, PRK12904, preprotein translocase subunit | 1e-38 | |
| PRK12906 | 796 | PRK12906, secA, preprotein translocase subunit Sec | 4e-34 | |
| COG0653 | 822 | COG0653, SecA, Preprotein translocase subunit SecA | 6e-34 | |
| PRK09200 | 790 | PRK09200, PRK09200, preprotein translocase subunit | 6e-32 | |
| PRK12903 | 925 | PRK12903, secA, preprotein translocase subunit Sec | 7e-29 | |
| PRK12901 | 1112 | PRK12901, secA, preprotein translocase subunit Sec | 4e-26 | |
| PRK13103 | 913 | PRK13103, secA, preprotein translocase subunit Sec | 2e-25 | |
| PRK12900 | 1025 | PRK12900, secA, preprotein translocase subunit Sec | 7e-25 | |
| PRK13107 | 908 | PRK13107, PRK13107, preprotein translocase subunit | 3e-24 | |
| PRK13104 | 896 | PRK13104, secA, preprotein translocase subunit Sec | 2e-23 | |
| TIGR03714 | 762 | TIGR03714, secA2, accessory Sec system translocase | 3e-22 | |
| PRK12898 | 656 | PRK12898, secA, preprotein translocase subunit Sec | 8e-22 | |
| PRK12326 | 764 | PRK12326, PRK12326, preprotein translocase subunit | 7e-21 | |
| PRK12899 | 970 | PRK12899, secA, preprotein translocase subunit Sec | 1e-20 | |
| TIGR04221 | 762 | TIGR04221, SecA2_Mycobac, accessory Sec system tra | 4e-17 | |
| pfam07516 | 213 | pfam07516, SecA_SW, SecA Wing and Scaffold domain | 1e-13 |
| >gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 814 bits (2104), Expect = 0.0
Identities = 364/731 (49%), Positives = 465/731 (63%), Gaps = 50/731 (6%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG VLH+G IAEMKTGEGKTLV+TL +YLNALTG+GVHVVTVNDYLA+RDA
Sbjct: 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDA 143
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +VHRFLGLSVGLIQ+ M PEER+ NY CDITY NSELGFDYLRDN+A + ++V
Sbjct: 144 EWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQ 203
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------H 174
R PF++ ++DEVDS+LIDE R PL+ISG+ + +Y AA+VA L +
Sbjct: 204 R---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGD 260
Query: 175 YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234
Y V+ K +V LT+EG A AE L +DL+D DPWA ++ NALKAKE + +DV YIVRN
Sbjct: 261 YEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320
Query: 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGM 294
G+ +I++E TGRV RRWS+G+HQA+EAKEG++IQ ++ +A ITYQ+ F LYPKL+GM
Sbjct: 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGM 380
Query: 295 TGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354
TGTAKTEE EF K +++ V +PTN P R D P Q + T KW E M + GR
Sbjct: 381 TGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGR 440
Query: 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAG 414
PVLVG+TSVE SE LS LL++QGIPHN+LNA+P+ REAE VAQAGRK A+TI+TNMAG
Sbjct: 441 PVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNMAG 500
Query: 415 RGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474
RGTDIILGGN +A+ + + L+ L + E D K P
Sbjct: 501 RGTDIILGGNSDYMARLKLREYLMPRLVKP----EDDHKPPVPLQRGLKGGQGFGPK--- 553
Query: 475 KAALLAKYVGKAEGKSWTY-----------QEAKSFFSESVEM------SQSMNLKELQK 517
K K+W +E + E+V+ +S+ EL+
Sbjct: 554 ---------AKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELED 604
Query: 518 LIDKQSAMYPLGPTVAL----TYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRI 573
I + P V Y + K+ EV S E EV GGLHVIGT HESRR+
Sbjct: 605 KIATAAEKAPTDDPVIQKLREAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRV 664
Query: 574 DNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVR 633
DNQLRGRAGRQGDPGSTRF +SL+D + + F D L++ +EDMPIE + R
Sbjct: 665 DNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDR--VAGLMNAFRVEEDMPIESGMLTR 722
Query: 634 QLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 693
L G Q E YY+ IRK + E+DEV+ QR+ +Y R+ +L G +Q+ Y +
Sbjct: 723 SLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780
Query: 694 VDEIIFGNVDP 704
+DEI+ V+P
Sbjct: 781 MDEIVEAYVNP 791
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Length = 939 |
| >gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Score = 799 bits (2067), Expect = 0.0
Identities = 335/699 (47%), Positives = 451/699 (64%), Gaps = 47/699 (6%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RHFDVQ+IGG VL+DG IAEMKTGEGKTLV+TL AYLNALTG+GVH+VTVNDYLA+RD
Sbjct: 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQ 134
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +++RFLGL+VGLIQ GM EER+ NY DITY NSELGFDYLRDN+A + +V
Sbjct: 135 EWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQ 194
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PF++ I+DEVDS+LIDE R PL+ISG++ ++ +Y VA ++A+ L + +HY V+ K
Sbjct: 195 R---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEK 251
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
N +V LTE+GI E L+ DL+ NDPW +++NALKAKE + ++V YIVRN + +I+
Sbjct: 252 NKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGR+ RRWS+G+HQA+EAKE L I+ ++ +A ITYQ+ F LYPKLSGMTGTAKT
Sbjct: 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKT 371
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE EF K++ + V+ +PT+ P +R DLP + KW E M + GRP+L+G+
Sbjct: 372 EELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGT 431
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
T++E SE LS LLK+ +PH +LNA+P+ RE+E VAQAGRK +ITI+TNMAGRGTDII
Sbjct: 432 TTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGRGTDII 491
Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL-L 479
LGGNP+ KK + D LL + E T S L+ + + L L+ +
Sbjct: 492 LGGNPEFKLKKELYDLLLSYKSNE------KISTISQNFLNILNSLKNDLKFLSLSDFEN 545
Query: 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSV 539
K + +A S+ Q + Y +
Sbjct: 546 LKILNEAS-------------------EISIPKNSYQLSLRF-------------LYNEL 573
Query: 540 LKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDE 599
L+ + E VK+LGGL+VIGT HESRRIDNQLRGRAGRQGDPGS+RF +SL+D
Sbjct: 574 LEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDN 633
Query: 600 MFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEV 659
+ + F D + + + N +D P+E + + L Q E+YY+ RK L E+D+V
Sbjct: 634 LLRIFGGD---KIQNLMQTLNLDDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQV 690
Query: 660 LEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEII 698
L QRK +Y R+ IL ++S I Y + V+D+II
Sbjct: 691 LNKQRKAIYSERRKILE--SQSLRDWILAYGEQVIDDII 727
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Length = 870 |
| >gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 708 bits (1829), Expect = 0.0
Identities = 245/436 (56%), Positives = 320/436 (73%), Gaps = 6/436 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG VLH+G IAEMKTGEGKTLV+TL AYLNALTG+GVHVVTVNDYLA+RDA
Sbjct: 80 MRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDA 139
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++ FLGLSVG+I GM PEERR Y DITY N+E GFDYLRDN+ + E+ V
Sbjct: 140 EWMGPLYEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQ 199
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R ++AIVDEVDS+LIDE R PL+ISG A Y A K+ L + YTV+ K
Sbjct: 200 R---GLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEK 256
Query: 181 NNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
+ +V LTEEGI AE L +L+D EN + AL+A E ++RDV YIV++G+ +I
Sbjct: 257 SRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVI 316
Query: 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
++E TGR+ RR+S+G+HQA+EAKEG+KIQ ++ +A IT+Q+ F++Y KL+GMTGTA
Sbjct: 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTAD 376
Query: 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
TE +EF +++ + V+ +PTN P IR+D P + T + K++ ++++ + G+PVLVG
Sbjct: 377 TEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVG 436
Query: 360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
+ S+E SE LS LLK+ GIPHNVLNA K REAE +AQAGR A+TI+TNMAGRGTDI
Sbjct: 437 TVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQAGRPGAVTIATNMAGRGTDI 494
Query: 420 ILGGNPKMLAKKIIED 435
LGGNP+MLA ++E+
Sbjct: 495 KLGGNPEMLAAALLEE 510
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Length = 830 |
| >gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit | Back alignment and domain information |
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Score = 671 bits (1733), Expect = 0.0
Identities = 262/422 (62%), Positives = 321/422 (76%), Gaps = 6/422 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MR FDVQ+IGG LH G IAEMKTGEGKTL +TL AYLNALTG+GVHVVTVNDYLAQRDA
Sbjct: 55 MRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDA 114
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM +V+RFLGLSVGLI GM PEERR Y CDITY N+ELGFDYLRDN+A + E+ V
Sbjct: 115 EWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQ 174
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R PFHFAI+DEVDS+LIDE R PL+ISG A K Y A + A+ L + +HY V+ K
Sbjct: 175 R---PFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEK 231
Query: 181 NNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
N +V LTE+GI AE L ++L+D EN P ++ NALKAKE + +DV YIVR+G+ +I
Sbjct: 232 NRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVI 291
Query: 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
++E TGR+ E RRWS+G+HQA+EAKEG++IQ ++ +A ITYQ+ F+LY KLSGMTGTAK
Sbjct: 292 VDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAK 351
Query: 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
TEE+EF K++ + V+ VPTN P IR DL + T KW+ E++ G+PVLVG
Sbjct: 352 TEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVG 411
Query: 360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
+TSVE SE LS+LLK++GIPHNVLNA K REAE +AQAGRK A+TI+TNMAGRGTDI
Sbjct: 412 TTSVEKSELLSNLLKERGIPHNVLNA--KNHEREAEIIAQAGRKGAVTIATNMAGRGTDI 469
Query: 420 IL 421
L
Sbjct: 470 KL 471
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system [Protein fate, Protein and peptide secretion and trafficking]. Length = 745 |
| >gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 591 bits (1527), Expect = 0.0
Identities = 239/427 (55%), Positives = 312/427 (73%), Gaps = 6/427 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VLH G IAEM+TGEGKTLV+TL AYLNAL G+GVHVVTVNDYLA+RDA
Sbjct: 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDA 138
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++ FLGLSVG+I GM PEE+R+ Y CDITY N+ELGFDYLRDN+ + E+ V
Sbjct: 139 EWMGPLYEFLGLSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQ 198
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R +FAIVDEVDS+LIDE R PL+ISG A Y + LL + +T++ K
Sbjct: 199 R---GLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEK 255
Query: 181 NNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
+ +V LTE G+ AE L +L+D EN + AL+A + RDV YIVR+G+ +I
Sbjct: 256 SKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVI 315
Query: 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
++E TGR+ E RRWS+G+HQA+EAKEG++IQ ++ +A IT+Q+LF+LYPKL+GMTGTA
Sbjct: 316 VDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTAD 375
Query: 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
TEE+EF ++ + V+ +PTN P IR+D P + T K++ ++++ G+PVLVG
Sbjct: 376 TEEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVG 435
Query: 360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
+ S+E SE LS LL++ GIPHNVLNA K AREAE +AQAG+ A+TI+TNMAGRGTDI
Sbjct: 436 TVSIEKSELLSKLLRKAGIPHNVLNA--KNHAREAEIIAQAGQPGAVTIATNMAGRGTDI 493
Query: 420 ILGGNPK 426
LGGNP+
Sbjct: 494 KLGGNPE 500
|
Length = 822 |
| >gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 571 bits (1474), Expect = 0.0
Identities = 230/440 (52%), Positives = 307/440 (69%), Gaps = 17/440 (3%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+R FDVQIIGG VLH+G+IAEMKTGEGKTL +TL YLNALTG+GVHVVTVN+YL+ RDA
Sbjct: 79 LRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDA 138
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
M ++R+LGL+VGL M P+E+R+ Y CDITY+ NSELGFDYLRDN+ EQ+V
Sbjct: 139 TEMGELYRWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQ 198
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG-------- 172
R P ++AIVDEVDS+LIDE R PL+ISG+A K Y A + + L++
Sbjct: 199 R---PLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDD 255
Query: 173 ---LHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDV 228
Y ++ K ++ LTE+GI AE ++L+D EN A + AL+A +D+
Sbjct: 256 EDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDI 315
Query: 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY 288
Y+V++G+ LI++E TGRV E RR+S+G+HQA+EAKEG+KIQ ++ +A ITYQ+ F++Y
Sbjct: 316 DYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMY 375
Query: 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVES 348
KLSGMTGTAKTEE+EF +++ M VI +PTN P IR D P + T K+ +E++
Sbjct: 376 KKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKE 435
Query: 349 MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITI 408
G+PVLVG+ ++E+SE LS LL + GIPH VLNA K A+EAE + AG++ A+TI
Sbjct: 436 RHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA--KNHAKEAEIIMNAGQRGAVTI 493
Query: 409 STNMAGRGTDIILGGNPKML 428
+TNMAGRGTDI LG K L
Sbjct: 494 ATNMAGRGTDIKLGPGVKEL 513
|
Length = 796 |
| >gnl|CDD|214937 smart00957, SecA_DEAD, SecA DEAD-like domain | Back alignment and domain information |
|---|
Score = 542 bits (1399), Expect = 0.0
Identities = 183/308 (59%), Positives = 229/308 (74%), Gaps = 5/308 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG VLH+G IAEMKTGEGKTLV+TL AYLNALTG+GVHVVTVNDYLA+RDA
Sbjct: 76 MRHFDVQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDA 135
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++ FLGL+VG+I GM PEERR+ Y DITY N+E GFDYLRDN+A + E V
Sbjct: 136 EWMGPLYEFLGLTVGVIVSGMSPEERRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQ 195
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK-DVARYPVAAKVAELLVQGLHYTVEL 179
R ++AIVDEVDS+LIDE R PL+ISG A Y A K L + YTV+
Sbjct: 196 R---GLNYAIVDEVDSILIDEARTPLIISGPAEDESSDLYHRADKFVPRLKEDEDYTVDE 252
Query: 180 KNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKAL 238
K+ +VELTEEGI AE L ++L+D EN V AL+A ++RDV YIVR+G+ +
Sbjct: 253 KSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVV 312
Query: 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298
I++E TGRV E RR+S+G+HQA+EAKEG++IQ ++ +A IT+Q+ F++Y KLSGMTGTA
Sbjct: 313 IVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTA 372
Query: 299 KTEEKEFL 306
KTE +EF
Sbjct: 373 KTEAEEFR 380
|
SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the. Length = 380 |
| >gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 551 bits (1422), Expect = 0.0
Identities = 213/424 (50%), Positives = 302/424 (71%), Gaps = 7/424 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MR +DVQ+IG VLH+G+IAEM+TGEGKTL +T+ YLNAL G+GVH++TVNDYLA+RDA
Sbjct: 77 MRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDA 136
Query: 61 EWMERVHRFLGLSVGLIQRGM-IPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLV 119
E M +V+ FLGL+VGL + E+++ Y DI YT NSELGFDYLRDNLA + E V
Sbjct: 137 EEMGQVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKV 196
Query: 120 MRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVEL 179
R P ++AI+DE+DS+L+DE + PL+ISG+ Y +AAK + L + + Y +
Sbjct: 197 QR---PLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDE 253
Query: 180 KNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKAL 238
+ V LT++GI AE ++L+ E+ R ++ AL+A ++RDV YIV +G+ +
Sbjct: 254 EKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIV 313
Query: 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298
+++ TGRV R+ +G+HQA+EAKEG++I ++ +A IT Q+LF+++PKLSGMTGTA
Sbjct: 314 LVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTA 373
Query: 299 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358
KTEEKEF +++ M V+++PTN P IR+D P + F T K++ +EV+ GRPVL+
Sbjct: 374 KTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLI 433
Query: 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTD 418
G+ S+E SE S LL + GIPHN+LNA K AA+EA+ +A+AG+K A+T++TNMAGRGTD
Sbjct: 434 GTGSIEQSETFSKLLDEAGIPHNLLNA--KNAAKEAQIIAEAGQKGAVTVATNMAGRGTD 491
Query: 419 IILG 422
I LG
Sbjct: 492 IKLG 495
|
Length = 790 |
| >gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 527 bits (1359), Expect = e-176
Identities = 213/422 (50%), Positives = 291/422 (68%), Gaps = 7/422 (1%)
Query: 2 RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61
R +DVQIIGG +L GS+AEMKTGEGKT+ S YLNALTG+GV V TVN+YLA+RDAE
Sbjct: 78 RPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAE 137
Query: 62 WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR 121
M +V FLGLSVG+ + M P +R Y CDITY+ +SELGFDYLRDN+ ++ E+ V R
Sbjct: 138 EMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQR 197
Query: 122 WPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKN 181
+F ++DEVDS+LIDE + PL+ISG S D Y A + L + Y ++ +
Sbjct: 198 ---GLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKED-DYKIDEET 253
Query: 182 NSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
++ LTE+GI A + +L+D EN + NAL+A + + DV+YIVR+GK ++
Sbjct: 254 KAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELV 313
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
++ TGR+ E R +SEG+ QA++AKE ++I+ ++ +A ITYQ+ F+L+ KLSGMTGTAKT
Sbjct: 314 DQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKT 373
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
EE+EF+ ++ M V VPTN P IR D P F T KW+ +EV+ + + G+P+L+G+
Sbjct: 374 EEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGT 433
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
VE+SE L +LL + IPH VLNA K AREAE +A+AG+K AITI+TNMAGRGTDI
Sbjct: 434 AQVEDSETLHELLLEANIPHTVLNA--KQNAREAEIIAKAGQKGAITIATNMAGRGTDIK 491
Query: 421 LG 422
L
Sbjct: 492 LS 493
|
Length = 925 |
| >gnl|CDD|219445 pfam07517, SecA_DEAD, SecA DEAD-like domain | Back alignment and domain information |
|---|
Score = 499 bits (1287), Expect = e-173
Identities = 177/309 (57%), Positives = 220/309 (71%), Gaps = 6/309 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRH+DVQ+IGG VLH+G IAEMKTGEGKTL +TL AYLNAL+G+GVHVVTVNDYLA+RDA
Sbjct: 76 MRHYDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDA 135
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++ FLGLSVG+I M PEERR Y CDITY NSELGFDYLRDN+A + E V
Sbjct: 136 EWMGPLYEFLGLSVGVITSDMSPEERREAYNCDITYGTNSELGFDYLRDNMALSKEDKVQ 195
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R +FAIVDEVDS+LIDE R PL+ISG + Y +A + + L + + K
Sbjct: 196 R---GLNFAIVDEVDSILIDEARTPLIISGPVEDESELYLIADALVKKLKKEEDEEDDEK 252
Query: 181 NNSVELTEEGIALAEMALETNDL---WDENDPWARFVMNALKAKEFYRRDVQYIVRNGKA 237
+V LTEEG E L + L W EN + ALKA + RDV YIVR+G+
Sbjct: 253 RRNVLLTEEGAKKEEELLLIDLLYDEWAENLELLHHINQALKAHHLFERDVDYIVRDGEV 312
Query: 238 LIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGT 297
+I++E TGR+ E RRWS+G+HQA+EAKEG++I ++ +A ITYQ+ F+LYPKL+GMTGT
Sbjct: 313 VIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEITPENQTLASITYQNFFRLYPKLAGMTGT 372
Query: 298 AKTEEKEFL 306
AKTE +EF
Sbjct: 373 AKTEAEEFR 381
|
SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270. Length = 381 |
| >gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 508 bits (1311), Expect = e-172
Identities = 207/446 (46%), Positives = 267/446 (59%), Gaps = 31/446 (6%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
RHFDVQ++GG L G +AEM+TGEGKTL +TL A AL G VHV+TVNDYLA+RDA
Sbjct: 102 QRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDA 161
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLA-------- 112
E M ++ LGL+VG + P+ERR+ Y DITY N EL FDYLRD LA
Sbjct: 162 ELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDA 221
Query: 113 -----------ANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK--DVARY 159
+ S QL++R HFAIVDE DSVLIDE R PL+IS A + + Y
Sbjct: 222 RLALESLHGRSSRSTQLLLR---GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVY 278
Query: 160 PVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETND-LWDENDPWARF--VMN 216
A ++A L +G YT++ +ELTE G A E+ W R V
Sbjct: 279 RQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW--RGAVRREELVRQ 336
Query: 217 ALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVV 276
AL A +RRD YIVR+GK +I++E TGRV R W +G+HQ +EAKEG ++ +
Sbjct: 337 ALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETL 396
Query: 277 AQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATAR 336
A+ITYQ F+ Y +L+GMTGTA+ E ++ +PV+ +PTN P+ R LP + F TA
Sbjct: 397 ARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAA 456
Query: 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAET 396
KW V + GRPVLVG+ SV SE LS LL++ G+PH VLNA+ A EA
Sbjct: 457 AKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAK--QDAEEAAI 514
Query: 397 VAQAGRKYAITISTNMAGRGTDIILG 422
VA+AG++ IT++TNMAGRGTDI L
Sbjct: 515 VARAGQRGRITVATNMAGRGTDIKLE 540
|
Length = 656 |
| >gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Score = 451 bits (1163), Expect = e-149
Identities = 197/428 (46%), Positives = 282/428 (65%), Gaps = 11/428 (2%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
M +DVQ++G VLH G+IAEMKTGEGKTL +T+ YLNALTG+G +VT NDYLA+RDA
Sbjct: 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDA 128
Query: 61 EWMERVHRFLGLSVGL-----IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANS 115
E M V+ +LGL+V L E+R Y DI YT NS LGFDYL DNLA+N
Sbjct: 129 EEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNK 188
Query: 116 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHY 175
E +R PF++ IVDEVDSVL+D + PL+ISG Y +A L + + Y
Sbjct: 189 EGKFLR---PFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDY 245
Query: 176 TVELKNNSVELTEEGIALAEMALETNDLW-DENDPWARFVMNALKAKEFYRRDVQYIVRN 234
+ V LT++GI AE + ++L+ +E R + AL+A ++R+ Y+V N
Sbjct: 246 IFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305
Query: 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGM 294
G+ ++++ +TGR+ E + GIHQA+EAKE +++ ++ +A ITYQ+LFK++ KLSGM
Sbjct: 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGM 365
Query: 295 TGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354
TGT K EKEF++ + + V+++PTN P IR+D P + +AT K ++V+ G+
Sbjct: 366 TGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQ 425
Query: 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAG 414
PVL+ + SVE SE S+LL ++GIPHN+LNA + AA+EA+ +A+AG+K A+T++T+MAG
Sbjct: 426 PVLLITGSVEMSEIYSELLLREGIPHNLLNA--QNAAKEAQIIAEAGQKGAVTVATSMAG 483
Query: 415 RGTDIILG 422
RGTDI LG
Sbjct: 484 RGTDIKLG 491
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii [Protein fate, Protein and peptide secretion and trafficking]. Length = 762 |
| >gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 437 bits (1124), Expect = e-141
Identities = 220/443 (49%), Positives = 293/443 (66%), Gaps = 24/443 (5%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGG LH+G IAEM+TGEGKTLV TLA YLNAL+G+GVHVVTVNDYLA+RDA
Sbjct: 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDA 140
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
WM ++ FLGLSVG++ PEE+R+ Y DITY N+E GFDYLRDN+A + +
Sbjct: 141 NWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDD--- 197
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------- 173
++ + +FA++DEVDS+LIDE R PL+ISG+A Y ++ L Q +
Sbjct: 198 KFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQV 257
Query: 174 ----HYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWAR--------FVMNALKAK 221
H+T++ K VEL E G E L L E + V L+A
Sbjct: 258 TQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAH 317
Query: 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITY 281
+ + R+V+YIV++G+ L+I+E TGR RR SEG+HQA+EAKE L IQA+S +A T+
Sbjct: 318 KLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTF 377
Query: 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEY 341
Q+ F+LY KLSGMTGTA TE EF +++ + V+ +P N P R D + TA K+
Sbjct: 378 QNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAA 437
Query: 342 ARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAG 401
+++ LGRPVLVG+ ++E SE++S+LLK++GI H VLNA KY +EAE +AQAG
Sbjct: 438 IITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNA--KYHEKEAEIIAQAG 495
Query: 402 RKYAITISTNMAGRGTDIILGGN 424
R A+TI+TNMAGRGTDI+LGGN
Sbjct: 496 RPGALTIATNMAGRGTDILLGGN 518
|
Length = 913 |
| >gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 415 bits (1068), Expect = e-135
Identities = 187/425 (44%), Positives = 253/425 (59%), Gaps = 8/425 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+R FDVQ++G L G + EM TGEGKTL +AA AL G VHV+TVNDYLA+RDA
Sbjct: 77 LRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDA 136
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM ++ LGL+VG I PEERR+ Y CD+TY + +E+GFD LRD L + LV
Sbjct: 137 EWMGPLYEALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVS 196
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
P P AI+DE DSVL+DE PL+++G + R +A V L +G Y ++
Sbjct: 197 --PNP-DVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRR-LREGKDYEIDDD 252
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFV-MN-ALKAKEFYRRDVQYIVRNGKAL 238
+V LT++G E AL DL+ E +N AL A +RDV YIVR+GK
Sbjct: 253 GRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVH 312
Query: 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298
+IN GR+ + +RW +G+ AVEAKEGL+ V+ IT Q+L YP + GMTGTA
Sbjct: 313 LINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTA 372
Query: 299 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358
++ + + + V +P N PNIR D + +ATA K + + + + G+PVLV
Sbjct: 373 VAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLV 432
Query: 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTD 418
G+ V SE L++ L+ G+P VLNA K A EA +A+AG+ A+T+ST MAGRGTD
Sbjct: 433 GTHDVAESEELAERLRAAGVPAVVLNA--KNDAEEARIIAEAGKYGAVTVSTQMAGRGTD 490
Query: 419 IILGG 423
I LGG
Sbjct: 491 IRLGG 495
|
Length = 764 |
| >gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 413 bits (1063), Expect = e-132
Identities = 212/446 (47%), Positives = 286/446 (64%), Gaps = 24/446 (5%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VL IAEM+TGEGKTL +TL AYLNALTG+GVHV+TVNDYLA+RDA
Sbjct: 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDA 140
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
E + FLGL+VG+ G+ +E+++ Y DITY N+E GFDYLRDN+A + ++ V
Sbjct: 141 ENNRPLFEFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQ 200
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY-PVAAKVAELLVQGLH----- 174
R P H+A++DEVDS+LIDE R PL+ISG A Y + + L+ Q
Sbjct: 201 R---PLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEY 257
Query: 175 -----YTVELKNNSVELTEEGIALAEMALETNDLWDENDPW--------ARFVMNALKAK 221
Y+++ K V TE G E L + E D V AL+A
Sbjct: 258 VGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAH 317
Query: 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITY 281
+ +DV YIV++ + +I++E TGR RRWSEG+HQAVEAKEG+ IQ ++ +A IT+
Sbjct: 318 TLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITF 377
Query: 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEY 341
Q+ F+ Y KL+GMTGTA TE EF ++ + + VPTN P +R D+ + TA K++
Sbjct: 378 QNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQA 437
Query: 342 ARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAG 401
++++ G+PVLVG+ S+E SE L+ L+ ++ IPH VLNA K+ REAE VAQAG
Sbjct: 438 IIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNA--KFHEREAEIVAQAG 495
Query: 402 RKYAITISTNMAGRGTDIILGGNPKM 427
R A+TI+TNMAGRGTDI+LGGN M
Sbjct: 496 RTGAVTIATNMAGRGTDIVLGGNWNM 521
|
Length = 908 |
| >gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 400 bits (1029), Expect = e-127
Identities = 214/439 (48%), Positives = 288/439 (65%), Gaps = 21/439 (4%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
+RHFDVQ+IGG VLH+G+IAEM+TGEGKTLV+TL AYLNA++G GVH+VTVNDYLA+RD+
Sbjct: 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDS 140
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
+WM+ ++ FLGL+VG+I M +E++ Y+ DI Y N+E GFDYLRDN+A + V
Sbjct: 141 QWMKPIYEFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQ 200
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY-------PVAAKVAELLVQGL 173
R +FAIVDEVDS+LIDE R PL+ISG A Y P K E +G
Sbjct: 201 R---ELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEG- 256
Query: 174 HYTVELKNNSVELTEEGIALAEMALETNDLWD--------ENDPWARFVMNALKAKEFYR 225
YT++ K LT+ G E L L D N V ALKA +
Sbjct: 257 DYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFH 316
Query: 226 RDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLF 285
RD+ YIV++ + +I++E TGR RRWSEG+HQAVEAKEG+ IQ ++ +A IT+Q+ F
Sbjct: 317 RDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFF 376
Query: 286 KLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQE 345
++Y KLSGMTGTA TE EF +++ + V+ +PTN IR D + T K++ ++
Sbjct: 377 RMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIED 436
Query: 346 VESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYA 405
V +PVLVG+ S+E SE+LS LLK++ I H VLNA K+ +EA+ +A+AGR A
Sbjct: 437 VRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNA--KFHEKEAQIIAEAGRPGA 494
Query: 406 ITISTNMAGRGTDIILGGN 424
+TI+TNMAGRGTDI+LGG+
Sbjct: 495 VTIATNMAGRGTDIVLGGS 513
|
Length = 896 |
| >gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type | Back alignment and domain information |
|---|
Score = 381 bits (981), Expect = e-122
Identities = 188/425 (44%), Positives = 254/425 (59%), Gaps = 8/425 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MR FDVQ++G L G + EM TGEGKTL +AA AL G+ VHVVTVNDYLA+RDA
Sbjct: 75 MRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDA 134
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM + F GL+VG + P+ERR+ Y CD+TY + +E+GFD LRD L + LV
Sbjct: 135 EWMGPLVDFFGLTVGWVTEDSTPDERRAAYACDVTYASVNEIGFDVLRDQLVTDRADLVQ 194
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
A++DE DSVL+DE PL+++G + R + V L + HYTV+
Sbjct: 195 PAAD---VALIDEADSVLVDEALVPLVLAGNEPGEAPRGRITDLVRR-LREDKHYTVDED 250
Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFV-MN-ALKAKEFYRRDVQYIVRNGKAL 238
+V LTE+G E L +DL+ E V +N AL A RDV YIVR+GK
Sbjct: 251 GRNVHLTEDGARAVEAELGIDDLYSEEHVGTTLVQVNVALHAHALLIRDVHYIVRDGKVA 310
Query: 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298
+I+ GRV + +RW +G+ AVEAKEGL++ V+ IT Q+L YP + GMTGTA
Sbjct: 311 LIDASRGRVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTA 370
Query: 299 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358
++ + + + V +P N PNIR D + +ATA K + +E+ + + G+PVLV
Sbjct: 371 VAAGEQLRQFYDLGVSVIPPNTPNIRFDEADRVYATAAEKNDAIVEEIAEVHKTGQPVLV 430
Query: 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTD 418
G+ V SE L++ L + G+P NVLNA K A EA +A+AG A+T+ST MAGRGTD
Sbjct: 431 GTQDVAESEELAEALLEAGVPCNVLNA--KNDAEEAAIIAEAGDIGAVTVSTQMAGRGTD 488
Query: 419 IILGG 423
I LGG
Sbjct: 489 IRLGG 493
|
Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714). Length = 762 |
| >gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 9e-75
Identities = 118/288 (40%), Positives = 172/288 (59%), Gaps = 36/288 (12%)
Query: 173 LHYTVELKNNSVELTEEGIA-------------LAEMALETNDLWDENDP---------- 209
L++ ++ KNNSVELT++GI L ++ E ++ +E
Sbjct: 414 LYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKE 473
Query: 210 --WARFVMNA---------LKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIH 258
+ + + + LKA + +D +Y+V +GK I++E TGR+ E RR+S+G+H
Sbjct: 474 ELFQDYSVKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLH 533
Query: 259 QAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318
QA+EAKE +KI+A + A IT Q+ F++Y KL+GMTGTA+TE EF ++++ V+ +PT
Sbjct: 534 QAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPT 593
Query: 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI 378
N P R D + T R K+ +E+ + GRPVLVG+TSVE SE LS +LK + I
Sbjct: 594 NRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKI 653
Query: 379 PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPK 426
PHNVLNA K +EAE VA+AG+ +TI+TNMAGRGTDI L K
Sbjct: 654 PHNVLNA--KLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVK 699
|
Length = 1112 |
| >gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 4e-68
Identities = 104/150 (69%), Positives = 115/150 (76%), Gaps = 3/150 (2%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
M +DVQ+IGG VLH G I+EM TGEGKTLVSTL +LNALTG GVHVVTVNDYLAQRD
Sbjct: 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDK 196
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM V F GLSVG+I M PEERR Y CDITY N+E GFDYLRDN+A E++V
Sbjct: 197 EWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQ 256
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150
R F+FAIVDEVDSVLIDE R PL+ISG
Sbjct: 257 R---DFYFAIVDEVDSVLIDEARTPLIISG 283
|
Length = 1025 |
| >gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 2e-65
Identities = 98/152 (64%), Positives = 113/152 (74%), Gaps = 6/152 (3%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
M H+DVQ+IGG VLH G IAEM TGEGKTLV+TL YLNALTG GVHVVTVNDYLA+RD+
Sbjct: 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDS 227
Query: 61 EWMERVHRFLGLSVGLIQRGMIP--EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQL 118
EWM ++ F GLSV I + P E RR Y DITY N+E GFDYLRDN+A + E L
Sbjct: 228 EWMGPLYEFHGLSVDCIDKHQ-PNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDL 286
Query: 119 VMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150
V R ++AIVDEVDSVLID+ R PL+ISG
Sbjct: 287 VQR---KHNYAIVDEVDSVLIDDARTPLIISG 315
|
Length = 1112 |
| >gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 9e-64
Identities = 117/285 (41%), Positives = 175/285 (61%), Gaps = 37/285 (12%)
Query: 173 LHYTVELKNNSVELTEEG-----------------------IAL--AEMALETNDLWDEN 207
L++ V+ K N+++LT++G IA ++ +L D +
Sbjct: 383 LYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKK 442
Query: 208 DPWARF----------VMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGI 257
D R + LKA + RD +Y+V+NG+ +I++E TGR+ RR+S+G+
Sbjct: 443 DEVYRLFAERSERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGL 502
Query: 258 HQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVP 317
HQA+EAKE +KI+ ++ +A IT Q+ F+LY KL+GMTGTA+TE EF +++++ V+ +P
Sbjct: 503 HQAIEAKENVKIEGETQTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIYKLDVVVIP 562
Query: 318 TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG 377
TN P +R D+ + T R K+ +VE + + G+PVLVG+ SVE SE LS +L+ +
Sbjct: 563 TNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR 622
Query: 378 IPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
I HNVLNA K REAE VA+AG+K A+TI+TNMAGRGTDI LG
Sbjct: 623 IAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG 665
|
Length = 1025 |
| >gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 5e-62
Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 2/204 (0%)
Query: 218 LKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVA 277
L+A +DV YIVR+ + +II+E TGR + RR+SEG+HQA+EAKE + I+ +S A
Sbjct: 433 LRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFA 492
Query: 278 QITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARG 337
+T Q+ F+LY KL+GMTGTA TE +EF +++ + V++VPT P +R+D + + T R
Sbjct: 493 TVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTERE 552
Query: 338 KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETV 397
K+ E+ S+ R G P+L+G+ SVE SE LS +L+Q I H VLNA K A+EAE +
Sbjct: 553 KYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNA--KNHAQEAEII 610
Query: 398 AQAGRKYAITISTNMAGRGTDIIL 421
A AG+ A+T++TNMAGRGTDI L
Sbjct: 611 AGAGKLGAVTVATNMAGRGTDIKL 634
|
Length = 970 |
| >gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 1e-53
Identities = 93/171 (54%), Positives = 118/171 (69%), Gaps = 5/171 (2%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
M +DVQI+G +H G I EM+TGEGKTL + + YLNALTG+ VH+VTVNDYLAQRD
Sbjct: 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDC 152
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDN-LAANSEQLV 119
EW+ V R+LGL+ G++ G E+R+ Y+CD+ Y SE GFDYLRDN +A E+ V
Sbjct: 153 EWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQV 212
Query: 120 MRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY-PVAAKVAELL 169
R F+FAI+DEVDS+LIDE R PL+ISG K Y + KVAEL+
Sbjct: 213 GR---GFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVYFELKDKVAELV 260
|
Length = 970 |
| >gnl|CDD|144583 pfam01043, SecA_PP_bind, SecA preprotein cross-linking domain | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-44
Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPW 210
A Y A K+ + L + Y V+ K+ VELTEEGI AE L +L+D EN
Sbjct: 2 AEDSSELYRRANKLVKTLKEEEDYEVDEKSRQVELTEEGIEKAEKLLGIENLYDPENIEL 61
Query: 211 ARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVE 262
+ AL+A ++RDV YIVR+G+ +I++E TGRV RRWS+G+HQA+E
Sbjct: 62 LHHINQALRAHHLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 113
|
The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain. Length = 113 |
| >gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 3e-42
Identities = 73/157 (46%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
EVK LGGL+VIGT HESRRIDNQLRGR+GRQGDPGS+RF +SL+D + + F D
Sbjct: 473 EVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDR--LE 530
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
L+ R+ ++D PIE + R L Q E F IRK L+E+D+VL QR+ +Y R+
Sbjct: 531 GLMRRLGLEDDEPIESKMVTRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERR 590
Query: 673 SILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKILE 709
IL E S+ I Q +++ +DEI+ ++ K E
Sbjct: 591 RILES--EDLSELILQMLESTLDEIVDAYINEQKPSE 625
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system [Protein fate, Protein and peptide secretion and trafficking]. Length = 745 |
| >gnl|CDD|214938 smart00958, SecA_PP_bind, SecA preprotein cross-linking domain | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-40
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 152 ASKDVARYPVAAKVAELLVQG-LHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDP 209
A Y A ++ L + Y V+ K+ V LTEEGI AE L ++L+D EN
Sbjct: 2 AEDSSELYKRADELVPTLKKDEEDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENIE 61
Query: 210 WARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVE 262
V AL+A + ++RDV YIVR+G+ +I++E TGRV RRWS+G+HQA+E
Sbjct: 62 LVHHVNQALRAHKLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain. Length = 114 |
| >gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 1e-38
Identities = 65/156 (41%), Positives = 90/156 (57%), Gaps = 12/156 (7%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
EV GGLHVIGT HESRRIDNQLRGR+GRQGDPGS+RF +SL+D++ + F
Sbjct: 529 EVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIF------GS 582
Query: 613 DLISRITN----DEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVY 668
D + + + E IE + R + Q E F IRK L+E+D+V+ QRK +Y
Sbjct: 583 DRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIY 642
Query: 669 DLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704
R IL G E S+ I + V+++++ + P
Sbjct: 643 AQRNEILEG--EDLSETILDMREDVIEDLVDAYIPP 676
|
Length = 830 |
| >gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 4e-34
Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL VIGT HESRRIDNQLRGR+GRQGDPGS+RF +SL+D++ ++F D
Sbjct: 507 GPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDR-- 564
Query: 611 AVDLISRIT-NDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYD 669
+ R+ ND+D IE I RQ+ Q E + RK L+++D+V+ QR+ +Y
Sbjct: 565 VKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYK 624
Query: 670 LRQSILTGANESCSQQIFQYMQAVVDEII 698
R ++ ++ + + ++ VD +
Sbjct: 625 QRMQVINE-DKDLKEVLMPMIKRTVDRQV 652
|
Length = 796 |
| >gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 6e-34
Identities = 68/154 (44%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
V LGGLHVIGT HESRRIDNQLRGRAGRQGDPGS+RF +SL+D++ ++F+ D
Sbjct: 501 FVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFASD--RLP 558
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
L+ ++ E IE + R + Q E F IRK L+E+D+VL QRK +Y R
Sbjct: 559 ALMDKLGLKEGEAIESKMVTRAVERAQRKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRN 618
Query: 673 SILTGAN--ESCSQQIFQYMQAVVDEIIFGNVDP 704
+L + E S+ I ++A+V E I
Sbjct: 619 RLLEALDLSEFISKMIEDVIKALVGEYIPPPQQA 652
|
Length = 822 |
| >gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 6e-32
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G V LGGL VIGT ESRR+D QLRGR+GRQGDPGS++F +SL+D++ ++F+
Sbjct: 495 GEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFA--PEE 552
Query: 611 AVDLISRITNDEDM---PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHV 667
L ++ D + + + ++ Q +E + R+ +E D+V+ +QR V
Sbjct: 553 LEKLKKKLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVV 612
Query: 668 YDLRQSILTGA---NESCSQQIFQ-YMQAVVDEIIFGNVDPL 705
Y R +L + Y++AV +E +
Sbjct: 613 YKERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLE 654
|
Length = 790 |
| >gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 7e-29
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 20/171 (11%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
EV LGGL+V+GT ESRRIDNQLRGR+GRQGD G +RF +SL D++F++FS
Sbjct: 493 SKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNFDKI 552
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
D I+ + LL Q E + F RK+++++D+V+ QR +Y
Sbjct: 553 K----EAFKKLGDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQ 608
Query: 671 RQSILTGAN---------ESCSQQIFQYMQAVVDEIIFGN--VDPLKILEF 710
R IL + +QI + II N ++ +++EF
Sbjct: 609 RDLILIADDLSHVIEKMISRAVEQILKN-----SFIILKNNTINYKELVEF 654
|
Length = 925 |
| >gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-26
Identities = 61/149 (40%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
EVK GGL +IGT HESRR+D QLRGRAGRQGDPGS++F VSL+D + + F +
Sbjct: 697 EVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSER--IA 754
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
++ R+ E I+ I + + Q E+ FGIRK L+E+D+V+ QR+ +Y R+
Sbjct: 755 KVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRR 814
Query: 673 SILTGANESCSQQIFQYMQAVVDEIIFGN 701
L G E I + V + I+ N
Sbjct: 815 HALMG--ERLGMDIANMIYDVCEAIVENN 841
|
Length = 1112 |
| >gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-25
Identities = 63/157 (40%), Positives = 91/157 (57%), Gaps = 4/157 (2%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
+V GGLHVI + HESRRIDNQLRGRAGRQGDPGS+RF +SL+D + + F+ D
Sbjct: 547 QVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFASDR--VK 604
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
+ + + IE + + Q E F IRK L+EFD+V QRK +Y +R
Sbjct: 605 NFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRN 664
Query: 673 SILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKILE 709
S+L A E+ + I ++ + V++ I ++ P + E
Sbjct: 665 SLL--AAENIGETIAEFREEVLNATISQHIPPQSLPE 699
|
Length = 913 |
| >gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-25
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 2/126 (1%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G V+ LGGL ++G+ HESRRID QLRGRAGRQGDPG + F VSL+DE+ + F D
Sbjct: 665 GEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVI 724
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
+V + R+ ++E IE I + + Q E+ F IRK L+E+D+VL QR+ +Y
Sbjct: 725 SV--MDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTR 782
Query: 671 RQSILT 676
R++ L
Sbjct: 783 RRNGLI 788
|
Length = 1025 |
| >gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-24
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
EV GGLH++GT HESRRIDNQLRGRAGRQGD GS+RF +S++D + + F+ D
Sbjct: 547 EVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDR--VS 604
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
++ ++ +E IE + R + Q E F IRK L+EFD+V QR+ VY R
Sbjct: 605 GMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRN 664
Query: 673 SILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKILEF 710
++ ES I V++ +I + P + E
Sbjct: 665 ELMDA--ESIEDTIKNIQDDVINGVIDQYIPPQSVEEL 700
|
Length = 908 |
| >gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
EV GGL +IG+ HESRRIDNQLRGRAGRQGDPGS+RF +SL+D + + F+ +
Sbjct: 543 EVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA--SERVA 600
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
++ R+ PIE + R + Q E ++F +RK L+++D V QR+ +Y R
Sbjct: 601 SMMRRLGMQPGEPIEHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRA 660
Query: 673 SI--LTGANESCSQQIFQYMQAVVDEII 698
SI +T E + M ++VD I
Sbjct: 661 SIMAMTDTQEVVEMMREEVMDSLVDTYI 688
|
Length = 896 |
| >gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 3e-22
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 11/154 (7%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G V LGGL VIGT E+ R+D QLRGR+GRQGDPGS++F VSL+D++ +++S SW
Sbjct: 491 GKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWS--PSW 548
Query: 611 AVDLISRITNDEDMPIEGDAI----VRQLLG-LQISAEKYYFGIRKSLVEFDEVLEVQRK 665
+ + +D ++ A+ R+++ Q ++E R+ EF+E L +QR+
Sbjct: 549 LKKYY-KKYSVKDSKLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRE 607
Query: 666 HVYDLRQSILTGA---NESCSQQIFQYMQAVVDE 696
++Y R ++ G+ ++ Q I +E
Sbjct: 608 NIYAERNRLIEGSDFLDDDVDQIIDDVFNMYAEE 641
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii [Protein fate, Protein and peptide secretion and trafficking]. Length = 762 |
| >gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 8e-22
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
V GGLHVI T H+S RID QL GR GRQGDPGS ++SL+D++ Q F
Sbjct: 540 EPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFL---GS 596
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGL-QISAEKYYFGIRKSLVEFDEVLE 661
I R + P G A+ LL Q AE+ + R++L+ DE L+
Sbjct: 597 RGLAIRR--MELLGPRGGRALGALLLRRAQRRAERLHARARRALLHADEQLD 646
|
Length = 656 |
| >gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 7e-21
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
V LGGLHVIGT H S R+DNQLRGRAGRQGDPGS+ F VSL+D++
Sbjct: 503 RVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANLAGEK--- 559
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
+ DED I + Q AE I + +++++ QR + + R+
Sbjct: 560 --LPAQP-DEDGRITSPKAADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRE 616
Query: 673 SILTGA 678
+L
Sbjct: 617 RLLRTD 622
|
Length = 764 |
| >gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 1e-20
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 553 EVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAV 612
E +GGL+VIGTS H+SRRID QLRGR R GDPG+ +F +S +D + + F+ +
Sbjct: 637 EAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLMRLFA--SPKLN 694
Query: 613 DLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQ 672
LI E + R + Q E + IRK +E+D+V+ QR+ +Y R
Sbjct: 695 TLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRN 754
Query: 673 SIL-TGANESCSQQIFQYMQAVVDEIIF 699
+L +++I +++ ++ +I
Sbjct: 755 DVLHAEDIFVVAKEIIEHVALMLASLIL 782
|
Length = 970 |
| >gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-17
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 549 NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT 608
+ V LGGLHVIGT H + R+DNQLRGRAGRQGDPGS+ F VSL+D++
Sbjct: 497 ADHDRVAELGGLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAV----- 551
Query: 609 SWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVY 668
A + + ED IE + + Q AE I + +++++ QR +
Sbjct: 552 GGAGETV-PAQPAEDGRIESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQRDIID 610
Query: 669 DLRQSILT 676
+ R+++L
Sbjct: 611 ERRETLLD 618
|
Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714). Length = 762 |
| >gnl|CDD|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 625 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQ 684
PIE + + + Q E F IRK+L+E+D+V+ QRK +Y R IL G E +
Sbjct: 1 PIESKMVTKAIENAQKKVEGRNFDIRKNLLEYDDVMNEQRKVIYAQRNEILEG--EDLKE 58
Query: 685 QIFQYMQAVVDEIIFGNVDPLKILE 709
I + ++ V+D+I+ E
Sbjct: 59 IILEMIEDVIDDIVEEYAPEKSYPE 83
|
SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 711 | |||
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 100.0 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 100.0 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PF01043 | 113 | SecA_PP_bind: SecA preprotein cross-linking domain | 99.97 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.97 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.97 | |
| PTZ00110 | 545 | helicase; Provisional | 99.97 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.96 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.96 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.96 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.96 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.95 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.95 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.95 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.95 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.94 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.93 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.93 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.92 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.92 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.92 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.92 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.92 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.92 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.91 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.9 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.9 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.9 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.89 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.89 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.89 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.89 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.88 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.86 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.85 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.85 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.85 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.84 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.84 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.84 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.82 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.82 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.81 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.8 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.79 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.78 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.77 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.77 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.77 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.77 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.76 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.76 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.76 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.72 | |
| PF07516 | 214 | SecA_SW: SecA Wing and Scaffold domain; InterPro: | 99.72 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.72 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.72 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.71 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.7 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.66 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.63 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.62 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.59 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.59 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.58 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.58 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.58 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.57 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.54 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.53 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.52 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.49 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.39 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.39 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.37 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.33 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.25 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.24 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.23 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.2 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.12 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.09 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.06 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.05 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.03 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.03 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 98.93 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 98.93 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.91 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 98.84 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.82 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.79 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 98.68 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 98.63 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.52 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.51 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.43 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.41 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.34 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.34 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.24 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 98.22 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 98.16 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.16 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.16 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 98.02 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.0 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 97.96 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 97.86 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 97.71 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 97.71 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 97.68 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 97.67 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.61 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 97.53 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 97.51 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 97.49 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 97.33 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 97.29 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 96.62 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 96.55 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.5 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 96.4 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 96.22 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.14 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 95.97 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.42 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 95.04 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 94.89 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 94.37 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 93.96 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 93.95 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 93.47 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 93.3 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 93.07 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 92.95 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 92.67 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 92.6 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 92.34 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 91.87 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 91.78 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 91.51 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 91.06 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 90.69 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 90.35 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 89.97 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 89.82 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 89.82 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 89.26 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 89.21 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 89.0 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 88.6 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 88.43 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 87.77 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 87.38 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 87.34 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 87.16 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 86.89 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 86.69 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 86.41 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 86.14 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 85.81 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 85.55 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 85.52 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 85.51 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 85.29 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 85.09 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 84.91 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 84.9 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 84.81 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 84.7 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 84.65 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 84.26 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 83.33 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 83.31 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 82.33 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 82.27 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 81.49 | |
| PRK08727 | 233 | hypothetical protein; Validated | 81.43 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 81.32 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 81.07 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 80.18 |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-203 Score=1733.92 Aligned_cols=682 Identities=53% Similarity=0.832 Sum_probs=611.6
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+|||||||+++||+|++||.|++|||||+|||||+||++||+|||+|||||||++.++
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
|++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||||||||||+...+...|.
T Consensus 164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~ 240 (939)
T PRK12902 164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ 240 (939)
T ss_pred CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999988889998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHccc------CCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 161 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 161 ~~~~i~~~l~~------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
.++++++.|.+ +.||.+|++.++++||++|+.++|++++++|||++.++|.|||.+||+|+++|++|+||||+|
T Consensus 241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d 320 (939)
T PRK12902 241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320 (939)
T ss_pred HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 99999999987 779999999999999999999999999999999988899999999999999999999999999
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeE
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv 314 (711)
|+|+|||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus 321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv 400 (939)
T PRK12902 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT 400 (939)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH
Q 005155 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea 394 (711)
.||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||||+||||++.|+++||
T Consensus 401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766889999
Q ss_pred HHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 005155 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (711)
Q Consensus 395 ~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (711)
+||++||++|+||||||||||||||+|||||+++++..++..+.+......+..... ......+ .++.+++
T Consensus 481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~--- 551 (939)
T PRK12902 481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKPP---VPLQRGL---KGGQGFG--- 551 (939)
T ss_pred HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhccccccccccccccc---ccccccc---ccccccc---
Confidence 999999999999999999999999999999999999887654333222211110000 0000000 0111111
Q ss_pred HHHHHHhhhccccCCchhhhhhhhc---chhhhhhhhhhhHHHHHHHh------------------hhhccCCCCChhhH
Q 005155 475 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKLI------------------DKQSAMYPLGPTVA 533 (711)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 533 (711)
...+++.+.|..+.+.-+ +++....+....-..+.+.. ............++
T Consensus 552 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (939)
T PRK12902 552 -------PKAKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR 624 (939)
T ss_pred -------cccccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence 125667889988776422 11111111100000011000 00011123345688
Q ss_pred HHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHH
Q 005155 534 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD 613 (711)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~ 613 (711)
.+|..++++++..|.+++++|+++|||||||||||||||||||||||||||||||||||||||||||||+|| ++++.+
T Consensus 625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~ 702 (939)
T PRK12902 625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG 702 (939)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005155 614 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 693 (711)
Q Consensus 614 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~ 693 (711)
+|+++++++++||+|++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++
T Consensus 703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~ 780 (939)
T PRK12902 703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780 (939)
T ss_pred HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999954 58999999999999
Q ss_pred HHHHHhhcCCCc
Q 005155 694 VDEIIFGNVDPL 705 (711)
Q Consensus 694 ~~~~~~~~~~~~ 705 (711)
|+++++.|.++.
T Consensus 781 i~~~v~~~~~~~ 792 (939)
T PRK12902 781 MDEIVEAYVNPD 792 (939)
T ss_pred HHHHHHHhcCCc
Confidence 999999987653
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-194 Score=1664.30 Aligned_cols=658 Identities=50% Similarity=0.793 Sum_probs=595.3
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||+|+|||+||++||+|||+|||||||++.++
T Consensus 75 ~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~ 154 (870)
T CHL00122 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEG 154 (870)
T ss_pred CCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||+||||||||.+.+...|.
T Consensus 155 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r---~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~ 231 (870)
T CHL00122 155 MSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQR---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYI 231 (870)
T ss_pred CChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhcc---ccceeeeecchhheeccCCCceeccCCCccchHHHH
Confidence 99999999999999999999999999999999998899998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviV 240 (711)
.++++++.|.++.||.+|++.|+++||++|+.++|+++++++||+..++|.++|.+||+|+++|++|+||||+||+|+||
T Consensus 232 ~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iV 311 (870)
T CHL00122 232 VADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311 (870)
T ss_pred HHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 99999999999899999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCC
Q 005155 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNL 320 (711)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~ 320 (711)
|++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|++||||+
T Consensus 312 De~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk 391 (870)
T CHL00122 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR 391 (870)
T ss_pred ECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhc
Q 005155 321 PNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA 400 (711)
Q Consensus 321 p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~A 400 (711)
|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.||++|.+.||||+||||++.++++||+||++|
T Consensus 392 p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A 471 (870)
T CHL00122 392 PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA 471 (870)
T ss_pred CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999755679999999999
Q ss_pred CCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHH
Q 005155 401 GRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480 (711)
Q Consensus 401 G~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (711)
|++|+||||||||||||||+|||||++|++..++..+.+.......... +..+.
T Consensus 472 G~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------------- 525 (870)
T CHL00122 472 GRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTI---SQNFL----------------------- 525 (870)
T ss_pred CCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccc---cccch-----------------------
Confidence 9999999999999999999999999999998876554432211100000 00000
Q ss_pred hhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhh-hhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLID-KQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
..-.|...+.+..-...++. ......++ ...+..+....++.+|...++++++.|.+++++|+++||
T Consensus 526 ------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GG 593 (870)
T CHL00122 526 ------NILNSLKNDLKFLSLSDFEN------LKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGG 593 (870)
T ss_pred ------hhhhhcccchhhhccccccc------ccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCC
Confidence 00011111110000000000 00000000 001122233458999999999999999999999999999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||||||||||||||||||||||+|||||||+||+.|| ++++.++|+++++ +++||++++++++|++||
T Consensus 594 L~VIgTErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~l~~~f~--~~~~~~~~~~~~~-~~~~i~~~~~~~~i~~aQ 670 (870)
T CHL00122 594 LYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFG--GDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQ 670 (870)
T ss_pred CEEEecCcCchHHHHHHHhccccCCCCCCcceEEEEeccHHHHhhC--hHHHHHHHHHhCC-CCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999 899999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
+++|++||++||++++||+|||.||++||++|++||++ +++.+++.+|++++++++++ |.++.
T Consensus 671 ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~-~~~~~ 733 (870)
T CHL00122 671 KKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILES--QSLRDWILAYGEQVIDDIIT-FLKSR 733 (870)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH-hcCcc
Confidence 99999999999999999999999999999999999954 68999999999999999999 77543
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-195 Score=1673.04 Aligned_cols=566 Identities=49% Similarity=0.740 Sum_probs=542.8
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~- 79 (711)
|||||||++||++||+|+||||+||||||||++||+|||||.|++|||||+|||||+||++||+|+|+||||||||+..
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~ 247 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKH 247 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC-ccc
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VAR 158 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~-~~~ 158 (711)
+|++++|+.+|.||||||||++||||||||||+.+++++||| +++||||||||||||||||||||||||.+.. ...
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR---~~~fAIVDEvDSILIDEARTPLIISGp~~~~~~~~ 324 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQR---KHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQE 324 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCc---CCceeEeechhhhhhccccCcEEEeCCCCCccHHH
Confidence 789999999999999999999999999999999999999999 9999999999999999999999999997655 477
Q ss_pred hHHHHHHHHHc------------------------------------------------cc-------------------
Q 005155 159 YPVAAKVAELL------------------------------------------------VQ------------------- 171 (711)
Q Consensus 159 y~~~~~i~~~l------------------------------------------------~~------------------- 171 (711)
|..++.++..| .+
T Consensus 325 y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e~~~~~~n~ 404 (1112)
T PRK12901 325 FEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTENFYMQDNN 404 (1112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 87777655444 22
Q ss_pred --------CCCeEEeCCCCeeeecHhhHHHHHH------hc----------CCCCCCC------------------CCCc
Q 005155 172 --------GLHYTVELKNNSVELTEEGIALAEM------AL----------ETNDLWD------------------ENDP 209 (711)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~------~~----------~~~~L~~------------------~~~~ 209 (711)
+.||.+|++.++++||+.|+.+++. +| +++++|+ .+..
T Consensus 405 ~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~~~~~~~~~ 484 (1112)
T PRK12901 405 REMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQDYSVKSE 484 (1112)
T ss_pred hcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhhhhhhhHhH
Confidence 3599999999999999999999988 77 7778876 2235
Q ss_pred hHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcC
Q 005155 210 WARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP 289 (711)
Q Consensus 210 ~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~ 289 (711)
+.|+|.+||+|+.+|++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+
T Consensus 485 ~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~ 564 (1112)
T PRK12901 485 RVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYH 564 (1112)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHH
Q 005155 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 369 (711)
Q Consensus 290 kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~L 369 (711)
||+||||||+||+.||+++|||+|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.|
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~l 644 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELL 644 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccc
Q 005155 370 SDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVE 449 (711)
Q Consensus 370 s~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (711)
|++|+..||||+|||| ++|++||+||++||++|+||||||||||||||+||
T Consensus 645 S~~L~~~gI~H~VLNA--K~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg--------------------------- 695 (1112)
T PRK12901 645 SRMLKMRKIPHNVLNA--KLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS--------------------------- 695 (1112)
T ss_pred HHHHHHcCCcHHHhhc--cchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccc---------------------------
Confidence 9999999999999999 68999999999999999999999999999999998
Q ss_pred cccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCC
Q 005155 450 VDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLG 529 (711)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (711)
T Consensus 696 -------------------------------------------------------------------------------- 695 (1112)
T PRK12901 696 -------------------------------------------------------------------------------- 695 (1112)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCch
Q 005155 530 PTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTS 609 (711)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~ 609 (711)
++|+++|||||||||||||||||||||||||||||||||+|||||||||||+|| ++
T Consensus 696 ----------------------~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fg--s~ 751 (1112)
T PRK12901 696 ----------------------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFG--SE 751 (1112)
T ss_pred ----------------------hhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhC--cH
Confidence 478999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005155 610 WAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQY 689 (711)
Q Consensus 610 ~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~ 689 (711)
++.++|.++++++|+||+|+|++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++...|.+|
T Consensus 752 ri~~~m~~~g~~ege~I~~~~i~ksIe~AQkkvE~~nf~iRK~lleYDdVmn~QR~vIY~~R~~iL~~--~~l~~~i~~~ 829 (1112)
T PRK12901 752 RIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMG--ERLGMDIANM 829 (1112)
T ss_pred HHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999954 5899999999
Q ss_pred HHHHHHHHHhhcCCC
Q 005155 690 MQAVVDEIIFGNVDP 704 (711)
Q Consensus 690 ~~~~~~~~~~~~~~~ 704 (711)
++++++++++.|.+.
T Consensus 830 i~~~i~~~v~~~~~~ 844 (1112)
T PRK12901 830 IYDVCEAIVENNKVA 844 (1112)
T ss_pred HHHHHHHHHHHhcCh
Confidence 999999999987653
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-192 Score=1637.80 Aligned_cols=562 Identities=48% Similarity=0.763 Sum_probs=549.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+||||||||++||+||+||+|++|||||+|||||+||++||+|||+|||||||+|.++
T Consensus 77 ~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~ 156 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKAN 156 (925)
T ss_pred CCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
|++++|+.+|.||||||||++||||||||||+.+.+++||| +++||||||||||||||||||||||||.+..+.+|.
T Consensus 157 ~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR---~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~ 233 (925)
T PRK12903 157 MDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQR---GLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYL 233 (925)
T ss_pred CChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCc---ccceeeeccchheeecccCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|.++ ||.+|++.|+++||++|+.++|++|++.+||+..+ .|.|||.+||+|+++|++|+||||+||+|+|
T Consensus 234 ~~~~~v~~L~~~-dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~I 312 (925)
T PRK12903 234 AADQFVRTLKED-DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIEL 312 (925)
T ss_pred HHHHHHHhcccc-ceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEE
Confidence 999999999865 99999999999999999999999999999999876 7999999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||+||||+|+||+||+||||||||||||+|++|++|+|+||||||||+|+||+||||||++|+.||+++||++|++||||
T Consensus 313 VDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTn 392 (925)
T PRK12903 313 VDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTN 392 (925)
T ss_pred EECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||.+|++.||||+|||| ++|++||+||++
T Consensus 393 kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA--k~~e~EA~IIa~ 470 (925)
T PRK12903 393 KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA--KQNAREAEIIAK 470 (925)
T ss_pred CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc--cchhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+||
T Consensus 471 AG~~GaVTIATNMAGRGTDI~Lg--------------------------------------------------------- 493 (925)
T PRK12903 471 AGQKGAITIATNMAGRGTDIKLS--------------------------------------------------------- 493 (925)
T ss_pred CCCCCeEEEecccccCCcCccCc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
++|+++||
T Consensus 494 ------------------------------------------------------------------------~~V~~~GG 501 (925)
T PRK12903 494 ------------------------------------------------------------------------KEVLELGG 501 (925)
T ss_pred ------------------------------------------------------------------------hhHHHcCC
Confidence 36889999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCc-hHHHHHHHhcCCCCCCcccchHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT-SWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (711)
|||||||||||||||||||||||||||||||+|||||||+|||+|| + +++.++|.+++++ ||++++++++|++|
T Consensus 502 LhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~--~~~ri~~~~~~l~~~---~i~~~~i~~~ie~A 576 (925)
T PRK12903 502 LYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFS--NFDKIKEAFKKLGDD---EIKSKFFSKALLNA 576 (925)
T ss_pred cEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHhC--CHHHHHHHHHhcCCC---cccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 8 9999999999863 99999999999999
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 639 Q~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
|++||++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++|+++++.|.++
T Consensus 577 QkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~ 640 (925)
T PRK12903 577 QKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA--DDLSHVIEKMISRAVEQILKNSFII 640 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999954 6899999999999999999988764
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-190 Score=1634.39 Aligned_cols=596 Identities=47% Similarity=0.746 Sum_probs=568.3
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+||||||||++||+|++||.|++|||||||+|||+||++||+|+|++|||+|+++.++
T Consensus 81 m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~ 160 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPF 160 (913)
T ss_pred CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||+|+.++++.||| +++||||||||||||||||||||||||.+.....|.
T Consensus 161 ~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr---~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~ 237 (913)
T PRK13103 161 QPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQR---ELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYI 237 (913)
T ss_pred CCHHHHHHHhcCCEEEEcccccccchhhccceechhhhccc---ccceeEechhhheeccccCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999988899999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHccc-----------CCCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHH
Q 005155 161 VAAKVAELLVQ-----------GLHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (711)
Q Consensus 161 ~~~~i~~~l~~-----------~~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~ 221 (711)
.++.++..|.+ +.||.+|++.++++||+.|+.++|+++ ++ .+||+..+ .+.+||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~ 317 (913)
T PRK13103 238 EINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAH 317 (913)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHH
Confidence 99999999954 359999999999999999999999987 55 67898776 7899999999999
Q ss_pred HHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH
Q 005155 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (711)
Q Consensus 222 ~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te 301 (711)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|+||+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te 397 (913)
T PRK13103 318 KLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTE 397 (913)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
+.||+++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.||++|++.||||+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~ 477 (913)
T PRK13103 398 AFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHK 477 (913)
T ss_pred HHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhh
Q 005155 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (711)
|||| ++|++||+||++||++|+||||||||||||||+|||||++.++ . + + +
T Consensus 478 VLNA--k~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~----~-~-~----~----------------- 528 (913)
T PRK13103 478 VLNA--KYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVA----A-L-E----N----------------- 528 (913)
T ss_pred Hhcc--ccchhHHHHHHcCCCCCcEEEeccCCCCCCCEecCCchHHHHH----h-h-h----h-----------------
Confidence 9999 6899999999999999999999999999999999999986321 0 0 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhh
Q 005155 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (711)
.-...++
T Consensus 529 -------------------------------------------------------------------------~~~~~~~ 535 (913)
T PRK13103 529 -------------------------------------------------------------------------PTPEQIA 535 (913)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0012345
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCC
Q 005155 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (711)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (711)
++++.|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||++|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg--~~~~~~~~~~~~~~ 613 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFA--SDRVKNFMKALGMQ 613 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhC--cHHHHHHHHHcCCC
Confidence 6778899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhc
Q 005155 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (711)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (711)
+++||++++++++|++||+++|++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~I~~~~i~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~ 691 (913)
T PRK13103 614 SGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA--ENIGETIAEFREEVLNATISQH 691 (913)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999954 5899999999999999999988
Q ss_pred CCCc
Q 005155 702 VDPL 705 (711)
Q Consensus 702 ~~~~ 705 (711)
.++.
T Consensus 692 ~~~~ 695 (913)
T PRK13103 692 IPPQ 695 (913)
T ss_pred cCCc
Confidence 7543
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-186 Score=1597.77 Aligned_cols=595 Identities=46% Similarity=0.720 Sum_probs=567.0
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||+|||++|||||+++.++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~ 160 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG 160 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||+|+.++++.||| +++||||||||||||||||||||||||.+...+.|.
T Consensus 161 ~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr---~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~ 237 (908)
T PRK13107 161 LGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQR---PLHYALIDEVDSILIDEARTPLIISGAAEDSSELYI 237 (908)
T ss_pred CCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhcc---ccceeeecchhhhccccCCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999998899999 999999999999999999999999999988888999
Q ss_pred HHHHHHHHcccC-----------CCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHH
Q 005155 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (711)
Q Consensus 161 ~~~~i~~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~ 221 (711)
.++.++..|.+. .||.+|++.++++||++|+.++|+++ ++ ++||+..+ .|.|||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~ 317 (908)
T PRK13107 238 KINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAH 317 (908)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHH
Confidence 999999988742 59999999999999999999999987 54 68998766 6899999999999
Q ss_pred HHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH
Q 005155 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (711)
Q Consensus 222 ~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te 301 (711)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|+||+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te 397 (908)
T PRK13107 318 TLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTE 397 (908)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
+.||+++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.|++.||.||.+|++.|++|+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~ 477 (908)
T PRK13107 398 AFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHE 477 (908)
T ss_pred HHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhh
Q 005155 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (711)
+||| +++++|++||++||++|+||||||||||||||+|||||++.++ . +. + +
T Consensus 478 vLna--k~~~~Ea~ii~~Ag~~G~VtIATnmAGRGTDIkLggn~~~~~~----~-----~~-~-~--------------- 529 (908)
T PRK13107 478 VLNA--KFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIE----A-----LE-N-P--------------- 529 (908)
T ss_pred eccC--cccHHHHHHHHhCCCCCcEEEecCCcCCCcceecCCchHHhhh----h-----hc-c-h---------------
Confidence 9999 5789999999999999999999999999999999999987211 0 00 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhh
Q 005155 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (711)
-...++
T Consensus 530 --------------------------------------------------------------------------~~~~~~ 535 (908)
T PRK13107 530 --------------------------------------------------------------------------TAEQKA 535 (908)
T ss_pred --------------------------------------------------------------------------hhHHHH
Confidence 012355
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCC
Q 005155 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (711)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (711)
++++.|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+|||+|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~--~~~~~~~~~~~~~~ 613 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFA--SDRVSGMMKKLGME 613 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhC--hHHHHHHHHHcCCC
Confidence 6788899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhc
Q 005155 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (711)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (711)
+++||++++++++|++||++||++||++||+|++||+|||.||++||++|+.+|++ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~ 691 (908)
T PRK13107 614 EGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDA--ESIEDTIKNIQDDVINGVIDQY 691 (908)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999954 5899999999999999999987
Q ss_pred CCC
Q 005155 702 VDP 704 (711)
Q Consensus 702 ~~~ 704 (711)
+++
T Consensus 692 ~~~ 694 (908)
T PRK13107 692 IPP 694 (908)
T ss_pred cCC
Confidence 643
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-185 Score=1565.48 Aligned_cols=554 Identities=42% Similarity=0.633 Sum_probs=532.2
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||||+|||+||++||+|+|++|||+|+++.++
T Consensus 77 ~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~ 156 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEE 156 (764)
T ss_pred CCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||+||||||||.+.. ..|.
T Consensus 157 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R---~~~faIVDEvDSiLIDeArtPLiISg~~~~~-~~y~ 232 (764)
T PRK12326 157 STPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSP---NPDVAIIDEADSVLVDEALVPLVLAGSTPGE-APRG 232 (764)
T ss_pred CCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCC---ccceeeecchhhheeccccCceeeeCCCcch-hHHH
Confidence 99999999999999999999999999999999998899999 9999999999999999999999999999887 8999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC--chHHHHHHHHHHHHHhccCcceEEeCCeEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~--~~~~~i~~AL~A~~l~~~d~dYiV~d~~Iv 238 (711)
.+++++..|.++.||.+|++.|+++||++|+.++|+++++.++|+..+ .+.++|++||+|+++|++|+||||+||+|+
T Consensus 233 ~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~ 312 (764)
T PRK12326 233 EIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVH 312 (764)
T ss_pred HHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEE
Confidence 999999999998999999999999999999999999999999998876 578999999999999999999999999999
Q ss_pred EEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCC
Q 005155 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (711)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (711)
|||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 313 iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPt 392 (764)
T PRK12326 313 LINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPP 392 (764)
T ss_pred EEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH
Q 005155 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (711)
Q Consensus 319 ~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia 398 (711)
|+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||++||.||.+|++.||||+|||| +++++||+||+
T Consensus 393 nkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA--k~~~~EA~IIa 470 (764)
T PRK12326 393 NKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA--KNDAEEARIIA 470 (764)
T ss_pred CCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc--CchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred hcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 005155 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (711)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (711)
+||++|+||||||||||||||+|||||+
T Consensus 471 ~AG~~gaVTIATNMAGRGTDIkLg~~~~---------------------------------------------------- 498 (764)
T PRK12326 471 EAGKYGAVTVSTQMAGRGTDIRLGGSDE---------------------------------------------------- 498 (764)
T ss_pred hcCCCCcEEEEecCCCCccCeecCCCcc----------------------------------------------------
Confidence 9999999999999999999999999875
Q ss_pred HHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcC
Q 005155 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (711)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (711)
+++++|+++|
T Consensus 499 ----------------------------------------------------------------------~~~~~V~~~G 508 (764)
T PRK12326 499 ----------------------------------------------------------------------ADRDRVAELG 508 (764)
T ss_pred ----------------------------------------------------------------------cchHHHHHcC
Confidence 1237899999
Q ss_pred CeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHH
Q 005155 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (711)
Q Consensus 559 GL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (711)
||||||||||||+|||||||||||||||||||+||||||||||++|| +++ + .+.++++++||++++++++|++|
T Consensus 509 GLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~~~f~--~~~--~--~~~~~~~~~~i~~~~~~~~i~~a 582 (764)
T PRK12326 509 GLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANL--AGE--K--LPAQPDEDGRITSPKAADLVDHA 582 (764)
T ss_pred CcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHHHhcC--chh--h--hhcCCCCCCcCcChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 774 1 23477889999999999999999
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005155 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYM 690 (711)
Q Consensus 639 Q~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~ 690 (711)
|++||++||++||++++||+|||.||++||++|++||++ +++.+.+...+
T Consensus 583 Qk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~--~~~~~~~~~~~ 632 (764)
T PRK12326 583 QRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT--DTAWEELAELA 632 (764)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHH
Confidence 999999999999999999999999999999999999954 46554443333
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-184 Score=1589.06 Aligned_cols=596 Identities=45% Similarity=0.711 Sum_probs=568.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg 160 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPD 160 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.|||+||||++||||||||+|+.+.++.||| +++|+||||||||||||||||||||||.+.+.++|.
T Consensus 161 ~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r---~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~ 237 (896)
T PRK13104 161 MSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQR---ELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYI 237 (896)
T ss_pred CCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhcc---ccceEEeccHhhhhhhccCCceeeeCCCccchHHHH
Confidence 99999999999999999999999999999999888888998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccC------CCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHHHHhcc
Q 005155 161 VAAKVAELLVQG------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAKEFYRR 226 (711)
Q Consensus 161 ~~~~i~~~l~~~------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~~l~~~ 226 (711)
.++.++..|.++ .||.+|++.++++||++|+.++|+++ ++ ++||+..+ .+.|||.+||+|+++|++
T Consensus 238 ~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~ 317 (896)
T PRK13104 238 KINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHR 317 (896)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcC
Confidence 999999999876 69999999999999999999999988 66 68998665 699999999999999999
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
|+||||+||+|+|||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|+||+||||||+|++.||+
T Consensus 318 d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~ 397 (896)
T PRK13104 318 DIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQ 397 (896)
T ss_pred CCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||+|++.||.||++|++.||+|++|||
T Consensus 398 ~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna- 476 (896)
T PRK13104 398 QIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNA- 476 (896)
T ss_pred HHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhc
Q 005155 387 PKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLG 466 (711)
Q Consensus 387 ~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (711)
+++++|++||++||++|+||||||||||||||+|||||++..+ +. +.
T Consensus 477 -k~~q~Ea~iia~Ag~~G~VtIATNmAGRGtDI~Lggn~~~~~~----~~---------~~------------------- 523 (896)
T PRK13104 477 -KFHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLA----NL---------PA------------------- 523 (896)
T ss_pred -CCChHHHHHHHhCCCCCcEEEeccCccCCcceecCCchhhhhh----cc---------cc-------------------
Confidence 5889999999999999999999999999999999999986211 00 00
Q ss_pred chhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhcccc
Q 005155 467 SSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVH 546 (711)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (711)
+ .-...+++++..
T Consensus 524 --------------------~-----------------------------------------------~~~~~~~~~~~~ 536 (896)
T PRK13104 524 --------------------D-----------------------------------------------ASEQEKEAVKKE 536 (896)
T ss_pred --------------------c-----------------------------------------------hhhHHHHHHHHH
Confidence 0 002345667888
Q ss_pred ccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcc
Q 005155 547 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPI 626 (711)
Q Consensus 547 ~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i 626 (711)
|.+++++|+++|||||||||||||||||||||||||||||||||+||||||||||++|| ++++.++|+++++++++||
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i 614 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA--SERVASMMRRLGMQPGEPI 614 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhC--hHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 627 EGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 627 ~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
++++++++|++||+++|++||++||++++||+|||.||++||++|++||++ +++.+.+..|++++|+++++.|.++
T Consensus 615 ~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~ 690 (896)
T PRK13104 615 EHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM--TDTQEVVEMMREEVMDSLVDTYIPP 690 (896)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999954 5889999999999999999988643
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-183 Score=1579.01 Aligned_cols=597 Identities=52% Similarity=0.827 Sum_probs=576.7
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||||+||+|++||.|++|||||||+|||+||++||+++|++|||+|++++++
T Consensus 80 ~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~ 159 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSG 159 (830)
T ss_pred CCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||+|+.+.++.++| +++|||||||||||||||+||||||||.+.++++|.
T Consensus 160 ~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r---~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~ 236 (830)
T PRK12904 160 MSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQR---GLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYK 236 (830)
T ss_pred CCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhccc---ccceEEEechhhheeccCCCceeeECCCCcccHHHH
Confidence 99999999999999999999999999999999988889998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|.++.||.+|++.|+++||++|+.++|+++++++||+..+ +|.+||.+||+|+++|++|+||||+||+|+|
T Consensus 237 ~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~i 316 (830)
T PRK12904 237 RANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVI 316 (830)
T ss_pred HHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988899999999999999999999999999999999876 7899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||++|++||+++||++|++||||
T Consensus 317 vDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 396 (830)
T PRK12904 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTN 396 (830)
T ss_pred EECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.||.|..+||.||+++|.++|.+||||||||.|++.||.|+..|.+.|++|++||| +++++|++|+++
T Consensus 397 kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna--kq~eREa~Iia~ 474 (830)
T PRK12904 397 RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQ 474 (830)
T ss_pred CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC--chHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+|||||+++|+..+..
T Consensus 475 Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~-------------------------------------------- 510 (830)
T PRK12904 475 AGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE-------------------------------------------- 510 (830)
T ss_pred cCCCceEEEecccccCCcCccCCCchhhhhhhhhhh--------------------------------------------
Confidence 999999999999999999999999999999855321
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
.+...++++++.|.+++++|+++||
T Consensus 511 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 511 -------------------------------------------------------ETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred -------------------------------------------------------hhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 0122355677889999999999999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||||||||||||||||||||||+||||||||||+.|| ++++.++|.++++++++||++++++++|++||
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 613 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFG--SDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQ 613 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhc--hHHHHHHHHHcCCCCCCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
+++|++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++|+++++.|.++.
T Consensus 614 ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~ 677 (830)
T PRK12904 614 KKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG--EDLSETILDMREDVIEDLVDAYIPPG 677 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999954 58999999999999999999888654
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-180 Score=1556.66 Aligned_cols=564 Identities=49% Similarity=0.789 Sum_probs=534.5
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++||++||+|+||||+||||||||++||+|||||+|++|||||+|||||+||++||+|+|+|||||||||.++
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~ 216 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNT 216 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC-ccch
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VARY 159 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~-~~~y 159 (711)
|++++|+.+|.||||||||++||||||||||+.+++++||| +++||||||||||||||||||||||||.+.. ...|
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR---~~~faIVDEvDSvLIDeARTPLIISgp~~~~~~~~y 293 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQR---DFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKF 293 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhcc---CCceEEEechhhhhhccccCceEEeCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999996655 5566
Q ss_pred HHHH-------------------------------------------------HHHHHccc-------------------
Q 005155 160 PVAA-------------------------------------------------KVAELLVQ------------------- 171 (711)
Q Consensus 160 ~~~~-------------------------------------------------~i~~~l~~------------------- 171 (711)
..++ .+++.|.+
T Consensus 294 ~~~~~~~~~lv~~q~~l~~~~l~ea~~~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~~e~~y~~dn~ 373 (1025)
T PRK12900 294 QEIKPWIEQLVRAQQNLVASYLTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQSTENEYLKDNS 373 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhhhhhHhhhhhh
Confidence 5443 22222332
Q ss_pred --------CCCeEEeCCCCeeeecHhhHHHHHHhcC--------------------------------CCC---CCCCCC
Q 005155 172 --------GLHYTVELKNNSVELTEEGIALAEMALE--------------------------------TND---LWDEND 208 (711)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~--------------------------------~~~---L~~~~~ 208 (711)
+.||.+|++.++++||++|++++++++. .++ +|+...
T Consensus 374 ~~~~~~~~~~~~~iDek~~~v~LTe~G~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~~l~~~~~~~~ 453 (1025)
T PRK12900 374 SRMHEVDDELYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDEVYRLFAERS 453 (1025)
T ss_pred hhccccCCCCeEEEEcCCCeeeecHhHHHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhhHHHhhcchhh
Confidence 2489999999999999999999998531 123 444445
Q ss_pred chHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhc
Q 005155 209 PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY 288 (711)
Q Consensus 209 ~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y 288 (711)
.+.|+|.+||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|
T Consensus 454 ~~~h~i~qaLkA~~lf~kD~~YvV~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y 533 (1025)
T PRK12900 454 ERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLY 533 (1025)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHH
Q 005155 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368 (711)
Q Consensus 289 ~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~ 368 (711)
+||+||||||+||+.||+++|+|+|++||||+|++|+|+||.||.|..+||.||+++|.+.|.+||||||||+|++.||.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~ 613 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSET 613 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhccc
Q 005155 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNV 448 (711)
Q Consensus 369 Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (711)
|+.+|++.||+|++||| +|+++|++|+++||++|+||||||||||||||+||
T Consensus 614 Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~-------------------------- 665 (1025)
T PRK12900 614 LSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 665 (1025)
T ss_pred HHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCc--------------------------
Confidence 99999999999999999 68999999999999999999999999999999998
Q ss_pred ccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCC
Q 005155 449 EVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPL 528 (711)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (711)
T Consensus 666 -------------------------------------------------------------------------------- 665 (1025)
T PRK12900 666 -------------------------------------------------------------------------------- 665 (1025)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCc
Q 005155 529 GPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT 608 (711)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~ 608 (711)
++|.++||||||||+||||+|||+||+||||||||||+|+||+|+||+|||.|| +
T Consensus 666 -----------------------~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~--~ 720 (1025)
T PRK12900 666 -----------------------EGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFG--S 720 (1025)
T ss_pred -----------------------cchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhC--c
Confidence 368889999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005155 609 SWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQ 688 (711)
Q Consensus 609 ~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~ 688 (711)
+++.++|.+++.++++||+++|++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++...|.+
T Consensus 721 ~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQk~vE~~nf~iRk~lleyDdv~n~QR~vIY~~R~~~L~~--~~~~~~i~~ 798 (1025)
T PRK12900 721 DRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTRRRNGLIK--ERLTSDIFD 798 (1025)
T ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999954 589999999
Q ss_pred HHHHHHHHHHhhcC
Q 005155 689 YMQAVVDEIIFGNV 702 (711)
Q Consensus 689 ~~~~~~~~~~~~~~ 702 (711)
|++++++++++.|.
T Consensus 799 ~~~~~~~~~v~~~~ 812 (1025)
T PRK12900 799 LLRDYCDTVVKKYH 812 (1025)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998654
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-181 Score=1542.11 Aligned_cols=571 Identities=53% Similarity=0.844 Sum_probs=558.9
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||.|.|+||+|||||||+++||+|+|||.|++|||||+|||||+||++||+|+|+|||||||++.++
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~ 158 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAG 158 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
|++++|+++|.|||||+||+|||||||||||+.+.++.||| +++|+||||||||||||||||||||||....+.+|.
T Consensus 159 m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr---~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~ 235 (822)
T COG0653 159 MSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQR---GLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYK 235 (822)
T ss_pred CChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhc---cCCeEEEcchhheeeeccccceeeecccccCchHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999998888889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|.+..||++|++.|+++||++|+.++|++|++.+||+.++ .+.|++++||+|+.+|.+|+||||+||+|+|
T Consensus 236 ~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~I 315 (822)
T COG0653 236 KVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVI 315 (822)
T ss_pred HHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEE
Confidence 999999999988899999999999999999999999999999999887 5899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||+||||+|+||+||+|||||||||||++|++||+|+|+||||||||+|+|++||||||.||+.||.++||++|++||||
T Consensus 316 vD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTn 395 (822)
T COG0653 316 VDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTN 395 (822)
T ss_pred EecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|++|.+|.|..+||.|++++|..+|.+||||||||.||+.||.+|++|++.||||+|||| +||++||+||++
T Consensus 396 rp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA--k~h~~EA~Iia~ 473 (822)
T COG0653 396 RPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA--KNHAREAEIIAQ 473 (822)
T ss_pred CcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc--ccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+|||||+
T Consensus 474 AG~~gaVTiATNMAGRGTDIkLg~~~~----------------------------------------------------- 500 (822)
T COG0653 474 AGQPGAVTIATNMAGRGTDIKLGGNPE----------------------------------------------------- 500 (822)
T ss_pred cCCCCccccccccccCCcccccCCCHH-----------------------------------------------------
Confidence 999999999999999999999998642
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
.|.++||
T Consensus 501 -------------------------------------------------------------------------~V~~lGG 507 (822)
T COG0653 501 -------------------------------------------------------------------------FVMELGG 507 (822)
T ss_pred -------------------------------------------------------------------------HHHHhCC
Confidence 4888999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||||||||||||||||||||+|+||+||||+|||+|| +|++..+|.++++.+++||+|+|++++|++||
T Consensus 508 L~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F~--~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQ 585 (822)
T COG0653 508 LHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFA--SDRLPALMDKLGLKEGEAIESKMVTRAVERAQ 585 (822)
T ss_pred cEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHHHHHHhc--chhhHHHHHhhcCCccCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
++||++||++||++++||+|||.||++||++|+++|+. .++.+.+..|++++++.++..+.+...
T Consensus 586 k~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~--~dl~~~~~~~~~~~~~~~v~~~~~~~~ 650 (822)
T COG0653 586 RKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEA--LDLSEFISKMIEDVIKALVGEYIPPPQ 650 (822)
T ss_pred HHHHhcCCcHHhhHHHHhHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhcccCCchh
Confidence 99999999999999999999999999999999999964 789999999999999999988876654
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-175 Score=1504.05 Aligned_cols=567 Identities=50% Similarity=0.812 Sum_probs=552.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+||||||||++||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 79 ~~~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~ 158 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNS 158 (796)
T ss_pred CCCchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||||+||||||||.+...++|.
T Consensus 159 ~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r---~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~ 235 (796)
T PRK12906 159 MSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQR---PLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYI 235 (796)
T ss_pred CCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhcc---CcceeeeccchheeeccCCCceecCCCCCcchHHHH
Confidence 99999999999999999999999999999999998899998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCC-----------CeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCc
Q 005155 161 VAAKVAELLVQGL-----------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 161 ~~~~i~~~l~~~~-----------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~ 228 (711)
.+++++..|.++. ||.+|++.|+++||++|+.++|+++++.++|+..+ .|.+||.+||+|+++|++|+
T Consensus 236 ~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~ 315 (796)
T PRK12906 236 RADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDI 315 (796)
T ss_pred HHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999998764 99999999999999999999999999999999876 68999999999999999999
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
||||+||+|+|||++|||+|+||+||+||||||||||||+|+||+.|+|+|||||||++|++|+||||||+++++||+++
T Consensus 316 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~i 395 (796)
T PRK12906 316 DYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREI 395 (796)
T ss_pred cEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
||++|++||||+|++|+|+||.||.|..+||.+|++++.+.|++||||||||+|++.||.|+..|++.|++|++||| +
T Consensus 396 Y~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna--~ 473 (796)
T PRK12906 396 YNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA--K 473 (796)
T ss_pred hCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred chHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcch
Q 005155 389 YAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSS 468 (711)
Q Consensus 389 ~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (711)
++++|++||++||++|+||||||||||||||+||
T Consensus 474 ~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~---------------------------------------------- 507 (796)
T PRK12906 474 NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLG---------------------------------------------- 507 (796)
T ss_pred cHHHHHHHHHhcCCCceEEEEeccccCCCCCCCC----------------------------------------------
Confidence 7899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhcccccc
Q 005155 469 SLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCS 548 (711)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (711)
T Consensus 508 -------------------------------------------------------------------------------- 507 (796)
T PRK12906 508 -------------------------------------------------------------------------------- 507 (796)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCC-CCCCccc
Q 005155 549 NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITN-DEDMPIE 627 (711)
Q Consensus 549 ~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~-~~~~~i~ 627 (711)
++|.++||||||+|+||||+|||+||+||||||||||+|+||+|||||||+.|| ++++.++|.++++ ++++||+
T Consensus 508 ---~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~--~~~~~~~~~~~~~~~~~~~i~ 582 (796)
T PRK12906 508 ---PGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFG--SDRVKAFLDRLGMNDDDQVIE 582 (796)
T ss_pred ---cchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhC--cHHHHHHHHHcCCCCCCCccc
Confidence 357889999999999999999999999999999999999999999999999999 9999999999999 8899999
Q ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 628 GDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 628 ~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
+++++++|++||+++|++||++||++++||+|||.||++||++|++||+++ +++.+.|.+|++++|+++++.|.++
T Consensus 583 ~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~~-~~l~~~i~~~~~~~i~~~i~~~~~~ 658 (796)
T PRK12906 583 SRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINED-KDLKEVLMPMIKRTVDRQVQMYTQG 658 (796)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999653 5899999999999999999988753
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-169 Score=1462.35 Aligned_cols=566 Identities=43% Similarity=0.662 Sum_probs=538.7
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+||+||+++++++++|.||||+||||||++|+||+++++|.|++|||||||+|||.||++||+++|+++|++|++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG 172 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSG 172 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHh-hhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccch
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~-l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y 159 (711)
++.++++.+|.||||||||++||||||+|+ |..+..+.||| +++|+||||||||||||||||||||||.+.++..|
T Consensus 173 ~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr---~~~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y 249 (970)
T PRK12899 173 SPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGR---GFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVY 249 (970)
T ss_pred CCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcc---cccEEEEechhhhhhhccCCceeeeCCCccccHHH
Confidence 999999999999999999999999999999 77777788998 99999999999999999999999999999998888
Q ss_pred HHHHHHHHHc-------------------------------------------------------------cc-------
Q 005155 160 PVAAKVAELL-------------------------------------------------------------VQ------- 171 (711)
Q Consensus 160 ~~~~~i~~~l-------------------------------------------------------------~~------- 171 (711)
..++.++..| .+
T Consensus 250 ~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 329 (970)
T PRK12899 250 FELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEGISEACRSLWLVSKGMPLNRVLRRVREHPDLRAM 329 (970)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhhhccccchhhhhhhhcccchhhh
Confidence 8877555443 11
Q ss_pred ----------------------CCCeEEeCCCCeeeecHhhHHHH--------HHhc---------CCC--CCCCC----
Q 005155 172 ----------------------GLHYTVELKNNSVELTEEGIALA--------EMAL---------ETN--DLWDE---- 206 (711)
Q Consensus 172 ----------------------~~~y~~d~~~k~v~Lt~~G~~~~--------e~~~---------~~~--~L~~~---- 206 (711)
+.||.+|++.++++||++|+.++ |.++ +++ +++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~ 409 (970)
T PRK12899 330 IDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVEKAGGSAEDFVMMDMGHEYALIEEDETLSPADKI 409 (970)
T ss_pred hhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhhhccCCHHHHhccchhhhhhccccccccCHHHhh
Confidence 23899999999999999999985 6676 553 43432
Q ss_pred ------------CCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCce
Q 005155 207 ------------NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV 274 (711)
Q Consensus 207 ------------~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~ 274 (711)
...+.|+|.+||+|+++|++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|+++++
T Consensus 410 ~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~ 489 (970)
T PRK12899 410 NRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQ 489 (970)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCce
Confidence 22588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCC
Q 005155 275 VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354 (711)
Q Consensus 275 t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~gr 354 (711)
|+|+|||||||++|++|+||||||+++++||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||
T Consensus 490 t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~gr 569 (970)
T PRK12899 490 TFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGN 569 (970)
T ss_pred eeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHH
Q 005155 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIE 434 (711)
Q Consensus 355 PVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~ 434 (711)
||||||.|++.||.||.+|.+.||+|+|||| +++++||+||++||++|+||||||||||||||+||
T Consensus 570 PvLigt~si~~se~ls~~L~~~gi~h~vLNa--k~~~~Ea~iia~AG~~g~VTIATNmAGRGTDIkl~------------ 635 (970)
T PRK12899 570 PILIGTESVEVSEKLSRILRQNRIEHTVLNA--KNHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD------------ 635 (970)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCcceeccc--chhhhHHHHHHhcCCCCcEEEeeccccCCcccccC------------
Confidence 9999999999999999999999999999999 58999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHH
Q 005155 435 DRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKE 514 (711)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (711)
T Consensus 636 -------------------------------------------------------------------------------- 635 (970)
T PRK12899 636 -------------------------------------------------------------------------------- 635 (970)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEE
Q 005155 515 LQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 594 (711)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~l 594 (711)
++|+++|||||||||||||+|||||||||||||||||||+|||
T Consensus 636 -------------------------------------~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 636 -------------------------------------EEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred -------------------------------------chHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE
Confidence 4689999999999999999999999999999999999999999
Q ss_pred ecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 005155 595 SLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSI 674 (711)
Q Consensus 595 SleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~i 674 (711)
|||||||+.|| ++++.++|.++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++|
T Consensus 679 SlEDdL~~~f~--~~~i~~~~~~~~~~~~~~I~~~~~~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~i 756 (970)
T PRK12899 679 SFEDRLMRLFA--SPKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDV 756 (970)
T ss_pred EcchHHHHHhC--cHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 675 LTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 675 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
|++ +++.+.|.+|++++++++++.|+++
T Consensus 757 L~~--~~~~~~i~~~~~~~i~~~v~~~~~~ 784 (970)
T PRK12899 757 LHA--EDIFVVAKEIIEHVALMLASLILKD 784 (970)
T ss_pred HcC--CcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 954 5899999999999999999988754
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-167 Score=1432.50 Aligned_cols=566 Identities=58% Similarity=0.907 Sum_probs=552.0
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 55 ~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~ 134 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSG 134 (745)
T ss_pred CCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.|||+||||++||||||||+|+...+..++| +++|||||||||||+|+||+||||||+.+.+..+|.
T Consensus 135 ~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r---~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~ 211 (745)
T TIGR00963 135 MSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQR---PFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYL 211 (745)
T ss_pred CCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhcc---ccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHH
Confidence 99999999999999999999999999999998888888888 999999999999999999999999999888888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+..|++.|.++.||++|++.|+++||++|+.++|++++++++|+..+ .|.+||.+||+|+++|++|+||||+||+|+|
T Consensus 212 ~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~i 291 (745)
T TIGR00963 212 QANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVI 291 (745)
T ss_pred HHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988999999999999999999999999999999999855 7999999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|++||||
T Consensus 292 vD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 371 (745)
T TIGR00963 292 VDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTN 371 (745)
T ss_pred EECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.||.|..+||+||+++|.++|++||||||||+|++.||.+++.|++.|++|++|||+ |+++|++|+++
T Consensus 372 kp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ 449 (745)
T TIGR00963 372 RPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQ 449 (745)
T ss_pred CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+++
T Consensus 450 ag~~g~VtIATnmAgRGtDI~l~--------------------------------------------------------- 472 (745)
T TIGR00963 450 AGRKGAVTIATNMAGRGTDIKLE--------------------------------------------------------- 472 (745)
T ss_pred cCCCceEEEEeccccCCcCCCcc---------------------------------------------------------
Confidence 99999999999999999999873
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
+|.++||
T Consensus 473 -------------------------------------------------------------------------~V~~~GG 479 (745)
T TIGR00963 473 -------------------------------------------------------------------------EVKELGG 479 (745)
T ss_pred -------------------------------------------------------------------------chhhcCC
Confidence 5788999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
||||+|+||||+|+|+||+||||||||||+|+||+|+||+||++|| ++++.++|.++++++++||+++++++++++||
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ 557 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFG--GDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhh--hHHHHHHHHHcCCCCCceeecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
+++|++||++||++++||+|||.||++||++|+++|+ ++++.+.+.+|++++|+++++.+.++.
T Consensus 558 ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~--~~~~~~~~~~~~~~~i~~~~~~~~~~~ 621 (745)
T TIGR00963 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILE--SEDLSELILQMLESTLDEIVDAYINEQ 621 (745)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999995 458999999999999999999887654
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-162 Score=1392.19 Aligned_cols=564 Identities=43% Similarity=0.684 Sum_probs=547.1
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|++++|+|.|+||+|||||||+|+||+++++|.|++|||||||+|||+||++||++||++||++|++++++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~ 148 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVD 148 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred -----CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC
Q 005155 81 -----MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (711)
Q Consensus 81 -----~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~ 155 (711)
+++++|+.+|+|||+||||++|+||||||+|+.++...++| +++|+|||||||||||||+|||||||++..+
T Consensus 149 s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r---~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 149 DPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLR---PFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred CCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccc---cCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 77889999999999999999999999999999887788888 9999999999999999999999999999988
Q ss_pred ccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeC
Q 005155 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 156 ~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
+.+|..++.+++.|.++.||++|++.|+++||++|+.++|++|++++||++.+ .+.+||.+||+|+++|++|+||||+|
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 88999999999999998999999999999999999999999999999998776 68999999999999999999999999
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeE
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv 314 (711)
|+|+|||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||++|+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH
Q 005155 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea 394 (711)
+||||+|++|+|+||.||.+..+||.|+++++.++|.+||||||||+|++.|+.++..|.+.|++|++|||+ ++++|+
T Consensus 386 ~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~--~~~~E~ 463 (762)
T TIGR03714 386 KIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ--NAAKEA 463 (762)
T ss_pred EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC--ChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 678999
Q ss_pred HHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 005155 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (711)
Q Consensus 395 ~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (711)
+++++||++|+||||||||||||||+||
T Consensus 464 ~ii~~ag~~g~VlIATdmAgRGtDI~l~---------------------------------------------------- 491 (762)
T TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG---------------------------------------------------- 491 (762)
T ss_pred HHHHHcCCCCeEEEEccccccccCCCCC----------------------------------------------------
Confidence 9999999999999999999999999998
Q ss_pred HHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhh
Q 005155 475 KAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEV 554 (711)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 554 (711)
++|
T Consensus 492 -----------------------------------------------------------------------------~~v 494 (762)
T TIGR03714 492 -----------------------------------------------------------------------------KGV 494 (762)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 368
Q ss_pred hhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCC----CcccchH
Q 005155 555 KRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDED----MPIEGDA 630 (711)
Q Consensus 555 ~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~----~~i~~~~ 630 (711)
+++||||||+|++|+|+|+|+|++||||||||||+|+||+|+||+||++|| ++++.++|.+++++++ +||++++
T Consensus 495 ~~~GGL~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 572 (762)
T TIGR03714 495 AELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWS--PSWLKKYYKKYSVKDSKLKPSALFKRR 572 (762)
T ss_pred cccCCeEEEEecCCCCcHHHHHhhhcccCCCCceeEEEEEccchhhhhhcc--hHHHHHHHHHcCCCcccccCcccccHH
Confidence 899999999999999999999999999999999999999999999999999 9999999999998765 8999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHHHHHhhcC
Q 005155 631 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANES-CSQQIFQYMQAVVDEIIFGNV 702 (711)
Q Consensus 631 ~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 702 (711)
++++|++||+++|++||++||++++||+|||.||++||++|++||++ ++ +.+.+.+|++++++++++.|.
T Consensus 573 ~~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~ 643 (762)
T TIGR03714 573 FRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG--SDFLDDDVDQIIDDVFNMYAEEQD 643 (762)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999954 46 899999999999999998763
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-159 Score=1381.02 Aligned_cols=569 Identities=45% Similarity=0.739 Sum_probs=552.8
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+|||||||+|+||++++||.|++|||||||+|||+||++||+++|++|||+|+++.++
T Consensus 77 ~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~ 156 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSD 156 (790)
T ss_pred CCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccch
Q 005155 81 MI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (711)
Q Consensus 81 ~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y 159 (711)
++ +++|+.+|.|||+||||++||||||||+|..++...++| +++|||||||||||||+|+|||||||+.+.++.+|
T Consensus 157 ~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r---~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y 233 (790)
T PRK09200 157 IDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQR---PLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLY 233 (790)
T ss_pred CCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhccc---ccceEEEeccccceeccCCCceeeeCCCccccHHH
Confidence 99 999999999999999999999999999999887778888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEE
Q 005155 160 PVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (711)
Q Consensus 160 ~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Iv 238 (711)
..+++++..|.++.||.+|++.++++||++|+.++|.++++.++|+..+ .|.+||.+||+|+++|++|+||||+||+|+
T Consensus 234 ~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ 313 (790)
T PRK09200 234 HIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIV 313 (790)
T ss_pred HHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEE
Confidence 9999999999988899999999999999999999999999999999766 688999999999999999999999999999
Q ss_pred EEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCC
Q 005155 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (711)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (711)
|||++|||+|+||+||+||||||||||||+|++|+.|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 314 ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt 393 (790)
T PRK09200 314 LVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT 393 (790)
T ss_pred EEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH
Q 005155 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (711)
Q Consensus 319 ~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia 398 (711)
|+|++|+|+||.||.+..+||.++++++.+.|.+||||||||+|++.|+.|+..|.+.|++|.+|||+ ++++|+.+++
T Consensus 394 ~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~--~~~~e~~~i~ 471 (790)
T PRK09200 394 NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAK--NAAKEAQIIA 471 (790)
T ss_pred CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCC--ccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 6789999999
Q ss_pred hcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 005155 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (711)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (711)
+||++|+||||||||||||||+||
T Consensus 472 ~ag~~g~VlIATdmAgRG~DI~l~-------------------------------------------------------- 495 (790)
T PRK09200 472 EAGQKGAVTVATNMAGRGTDIKLG-------------------------------------------------------- 495 (790)
T ss_pred HcCCCCeEEEEccchhcCcCCCcc--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred HHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcC
Q 005155 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (711)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (711)
++|.++|
T Consensus 496 -------------------------------------------------------------------------~~V~~~G 502 (790)
T PRK09200 496 -------------------------------------------------------------------------EGVHELG 502 (790)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 4688899
Q ss_pred CeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCC---CCcccchHHHHHH
Q 005155 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDE---DMPIEGDAIVRQL 635 (711)
Q Consensus 559 GL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~i 635 (711)
|||||+|++|+|+|+++|++|||||||+||+|+||+|+||+||+.|| ++++.+++.++++++ ++||+++++++++
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFA--PEELEKLKKKLKTDAQRLTGLLFNRKVHKIV 580 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhc--cHHHHHHHHHcCCccccCCcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999888 8999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCc
Q 005155 636 LGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPL 705 (711)
Q Consensus 636 ~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (711)
++||+++|++||++||++++||+|||.||++||++|++||+++..++.+.+..|++++++++++.++++.
T Consensus 581 ~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (790)
T PRK09200 581 VKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEK 650 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999765558999999999999999999887543
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-150 Score=1279.00 Aligned_cols=524 Identities=47% Similarity=0.699 Sum_probs=506.5
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+||||||++|+||++++++.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 102 ~~p~~VQ~~~~~~ll~G~Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg 181 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVED 181 (656)
T ss_pred CCCChHHHHHHHHHhCCCeeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhc-------------------chhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAA-------------------NSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~-------------------~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+++++|+.+|+||||||||++||||||||||+. +.++.++| +++||||||||||||||
T Consensus 182 ~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 182 QSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR---GLHFAIVDEADSVLIDE 258 (656)
T ss_pred CCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc---ccceeEeecccceeecc
Confidence 999999999999999999999999999999987 55678888 99999999999999999
Q ss_pred CCCceeccCCCCCC--ccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCC-CCCCCCCCchHHHHHHHH
Q 005155 142 GRNPLLISGEASKD--VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDENDPWARFVMNAL 218 (711)
Q Consensus 142 a~tPLiiSg~~~~~--~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~~~~~~i~~AL 218 (711)
|+||||||||.... .++|..++.+++.|.++.||++|+++++++||+.|+.++|+++++ .++|+....+.+||++||
T Consensus 259 artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 259 ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 99999999998766 579999999999999989999999999999999999999999987 789988878999999999
Q ss_pred HHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCc
Q 005155 219 KAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298 (711)
Q Consensus 219 ~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa 298 (711)
+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|++|+.|+|+|||||||++|++|+|||||+
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCC
Q 005155 299 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI 378 (711)
Q Consensus 299 ~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi 378 (711)
+++++||.++|+++|+.||||+|++|+++++.+|.+..+||.+|++++.+.++.|+||||||+|++.|+.+++.|.+.|+
T Consensus 419 ~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi 498 (656)
T PRK12898 419 REVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGL 498 (656)
T ss_pred hHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcc
Q 005155 379 PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPK 458 (711)
Q Consensus 379 ~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (711)
+|.+||++ ++++|+.++++||++|.||||||||||||||+++
T Consensus 499 ~~~~Lhg~--~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~------------------------------------ 540 (656)
T PRK12898 499 PHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------------------ 540 (656)
T ss_pred CEEEeeCC--cHHHHHHHHHHcCCCCcEEEEccchhcccCcCCc------------------------------------
Confidence 99999995 7899999999999999999999999999999987
Q ss_pred hhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhh
Q 005155 459 VLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLS 538 (711)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (711)
T Consensus 541 -------------------------------------------------------------------------------- 540 (656)
T PRK12898 541 -------------------------------------------------------------------------------- 540 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhc
Q 005155 539 VLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRI 618 (711)
Q Consensus 539 ~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~ 618 (711)
++|.++||||||+|++|+|+|+|+|++|||||||+||+++||+|+||+||+.|+ ++++.+++..+
T Consensus 541 -------------~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~ 605 (656)
T PRK12898 541 -------------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFL--GSRGLAIRRME 605 (656)
T ss_pred -------------cchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHhhh--hHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999 99999999988
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 005155 619 TNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEV 662 (711)
Q Consensus 619 ~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~ 662 (711)
++.+ .+.++++++++++||+++|++||++||++++||++++.
T Consensus 606 ~~~~--~~~~~~~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~~~~~ 647 (656)
T PRK12898 606 LLGP--RGGRALGALLLRRAQRRAERLHARARRALLHADEQLDK 647 (656)
T ss_pred cCCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754 36699999999999999999999999999999999874
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=534.84 Aligned_cols=191 Identities=65% Similarity=1.009 Sum_probs=174.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+|+||+|||||||+++||++++||.|++|||||+|+|||+||++||+|||++|||+|++++++
T Consensus 76 ~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~ 155 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSD 155 (266)
T ss_dssp ----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETT
T ss_pred CcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+++|.||||||||++|+||||||++..++...++| +++|||||||||||||+|++||+|||
T Consensus 156 ~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r---~~~~~ivDEvDs~LiDea~~pl~is~---------- 222 (266)
T PF07517_consen 156 MSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQR---GFDFAIVDEVDSILIDEARTPLIISG---------- 222 (266)
T ss_dssp TEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SS---SSSEEEECTHHHHTTTGCCSEEEEEE----------
T ss_pred cCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccC---CCCEEEEeccceEEEecCcccccccc----------
Confidence 99999999999999999999999999999999988888888 99999999999999999999999998
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviV 240 (711)
T Consensus 223 -------------------------------------------------------------------------------- 222 (266)
T PF07517_consen 223 -------------------------------------------------------------------------------- 222 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
+|||++|+|++.|+++||||+||++|++|+|||||++++++||+
T Consensus 223 ----------------------~Ke~~~i~~~~~t~a~is~q~~f~~Y~~l~GmTGTa~~~~~e~~ 266 (266)
T PF07517_consen 223 ----------------------AKEGLKITPESLTLASISYQNFFRLYPKLSGMTGTAKTEAKEFW 266 (266)
T ss_dssp ----------------------HHTTS----SEEEEEEEEHHHHHTTSSEEEEEESSTGGGHHHHH
T ss_pred ----------------------cccCCccCCCCeEEEEeehHHHHHhcchheeeCCCChhhHhhcC
Confidence 89999999999999999999999999999999999999999996
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=310.23 Aligned_cols=281 Identities=21% Similarity=0.290 Sum_probs=216.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---------G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
.|+|+|..+.+.++.|+ |+..+||+||||+|+||+..+... |..|.|++|+++||.|..+.+..|...+
T Consensus 113 ~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~ 192 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSL 192 (519)
T ss_pred CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCC
Confidence 59999999999999999 999999999999999999976665 4579999999999999999999999999
Q ss_pred CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
++++.|++|+.+ +|.+....++||+++||+++ .|.|..+ ...++ .+.|+|+||||.|| |+++-|
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl-----~d~le~g--~~~l~---~v~ylVLDEADrMl-dmGFe~--- 258 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRL-----IDLLEEG--SLNLS---RVTYLVLDEADRML-DMGFEP--- 258 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHH-----HHHHHcC--Ccccc---ceeEEEeccHHhhh-ccccHH---
Confidence 999999999976 88888999999999999997 6666554 34566 89999999999997 887665
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
++.+|+..+++. .+|+. +|+++ |+.||.+. |..++.
T Consensus 259 ------------qI~~Il~~i~~~--------~rQtl-----------------m~saT--wp~~v~~l--A~~fl~--- 294 (519)
T KOG0331|consen 259 ------------QIRKILSQIPRP--------DRQTL-----------------MFSAT--WPKEVRQL--AEDFLN--- 294 (519)
T ss_pred ------------HHHHHHHhcCCC--------cccEE-----------------EEeee--ccHHHHHH--HHHHhc---
Confidence 899999999542 34555 67777 78888854 566664
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
+|+-.+ + |... +.| ...+|+.
T Consensus 295 ~~~~i~----i-----g~~~-------------~~~----------a~~~i~q--------------------------- 315 (519)
T KOG0331|consen 295 NPIQIN----V-----GNKK-------------ELK----------ANHNIRQ--------------------------- 315 (519)
T ss_pred CceEEE----e-----cchh-------------hhh----------hhcchhh---------------------------
Confidence 444321 1 1100 000 0000100
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
.....+..+|...+...+...+ ..+-+|||||+++..++.|+..|...++++..||++.
T Consensus 316 --------------------ive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~ 375 (519)
T KOG0331|consen 316 --------------------IVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDK 375 (519)
T ss_pred --------------------hhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccc
Confidence 0011234455555555554443 4556899999999999999999999999999999987
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.|.+|+..+-. +.| +-.|.||||+|+||.||+
T Consensus 376 sQ~eR~~~L~~FreG-~~~vLVATdVAaRGLDi~ 408 (519)
T KOG0331|consen 376 SQSERDWVLKGFREG-KSPVLVATDVAARGLDVP 408 (519)
T ss_pred cHHHHHHHHHhcccC-CcceEEEcccccccCCCc
Confidence 77777765554 455 558999999999999995
|
|
| >PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=246.45 Aligned_cols=109 Identities=43% Similarity=0.722 Sum_probs=103.5
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCC-CCCCCCCC-chHHHHHHHHHHHHHhccCcceE
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDEND-PWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
.++++|..++++++.|.++.||++|+++|+++||+.|+.++|+++++ +++|+..+ +|.++|.+||+|+++|++|+|||
T Consensus 3 ~~~~~y~~a~~~~~~L~~~~dy~vde~~~~v~LT~~G~~~~e~~~~~~~~l~~~~~~~~~~~i~~AL~A~~l~~rd~dYi 82 (113)
T PF01043_consen 3 DSSNLYREADKFAKQLKEDEDYEVDEKQRTVELTEKGIEKAEKLLGISDNLYDEENSELYHHINQALKAHHLFKRDVDYI 82 (113)
T ss_dssp SCHHHHHHHHHHHHHSHTTTSECECTSTTEEEESHHHHHHHHHHHTSSSSTTSTTCHHHHHHHHHHHHHHHCSTTTTSEE
T ss_pred hhHHHHHHHHHHHHhCCCCCCEEEeCCCCeeeEhHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHHhCCcceE
Confidence 45678999999999999999999999999999999999999999999 99999988 89999999999999999999999
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHH
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVE 262 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiE 262 (711)
|+||+|+|||+||||+||||+||+|||||||
T Consensus 83 V~dg~V~IVDe~TGR~m~gRrws~GLHQaIE 113 (113)
T PF01043_consen 83 VRDGEVVIVDEFTGRIMPGRRWSDGLHQAIE 113 (113)
T ss_dssp EETTEEEEBCTTTTSEBTT--STTTHHHHHH
T ss_pred EEcCEEEEEECCCCCcCCCCcCCchhhHhhC
Confidence 9999999999999999999999999999997
|
This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A .... |
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=286.63 Aligned_cols=276 Identities=19% Similarity=0.241 Sum_probs=208.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--CC---C-EEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--GE---G-VHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--G~---~-VhVvT~NdyLA~RDae~~~~~y~~L-GL 72 (711)
.|+|||..+++.+++|+ |++.+||+|||++|++|++ +.|. .. . +.|++||++||.|.++.+..+...+ ++
T Consensus 51 ~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l-~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~ 129 (513)
T COG0513 51 EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLL-QKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGL 129 (513)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCc
Confidence 69999999999999999 9999999999999999997 4465 32 2 8999999999999999999999999 89
Q ss_pred eEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccC
Q 005155 73 SVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (711)
Q Consensus 73 tv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg 150 (711)
++.+++|+++...+ +..-++||++|||+++ .|++. .. ...+. ++.++|+||||.|| |++
T Consensus 130 ~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRl-lD~i~----~~--~l~l~---~v~~lVlDEADrmL-d~G-------- 190 (513)
T COG0513 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRL-LDLIK----RG--KLDLS---GVETLVLDEADRML-DMG-------- 190 (513)
T ss_pred cEEEEECCCCHHHHHHHHhcCCCEEEECccHH-HHHHH----cC--Ccchh---hcCEEEeccHhhhh-cCC--------
Confidence 99999999874433 3334699999999998 45543 33 34455 89999999999997 665
Q ss_pred CCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcce
Q 005155 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dY 230 (711)
+.+.+..++..+++ ++++. +||++.+- .|.. + |+.++. |.-.
T Consensus 191 -------f~~~i~~I~~~~p~---------~~qtl-----------------lfSAT~~~--~i~~-l-~~~~l~-~p~~ 232 (513)
T COG0513 191 -------FIDDIEKILKALPP---------DRQTL-----------------LFSATMPD--DIRE-L-ARRYLN-DPVE 232 (513)
T ss_pred -------CHHHHHHHHHhCCc---------ccEEE-----------------EEecCCCH--HHHH-H-HHHHcc-CCcE
Confidence 44588888888864 57777 79988643 3443 2 344443 2211
Q ss_pred EEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCce--eeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 231 iV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~--t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
+.+.++.. +...|...
T Consensus 233 ------------------------------------i~v~~~~~~~~~~~i~q~-------------------------- 250 (513)
T COG0513 233 ------------------------------------IEVSVEKLERTLKKIKQF-------------------------- 250 (513)
T ss_pred ------------------------------------EEEccccccccccCceEE--------------------------
Confidence 11111111 33333321
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChh-HHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~-~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
.++.... +|+..+...+... ....+||||+++..++.|+..|...|+++..||+++
T Consensus 251 ---------------------~~~v~~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l 307 (513)
T COG0513 251 ---------------------YLEVESEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307 (513)
T ss_pred ---------------------EEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 2233333 4777766665432 222599999999999999999999999999999998
Q ss_pred cchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+.+|+..+-...-..-.|+|||+.|+||+||.
T Consensus 308 ~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 308 PQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 888888877763333679999999999999996
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=274.56 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=223.6
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHH------------HHHcCCCEEEEecCHHHHHHHHHHHHHH
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYL------------NALTGEGVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l------------~AL~G~~VhVvT~NdyLA~RDae~~~~~ 66 (711)
|-|.|+|-++++++++.+ |.-+.||+|||++|.+|+.. +-..|....|+.|+++||++..++-..|
T Consensus 266 ~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 569999999999988766 88888999999999998863 2225888999999999999999999999
Q ss_pred hhhcCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCC
Q 005155 67 HRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (711)
Q Consensus 67 y~~LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~t 144 (711)
...||+.|..++++.+-+++ +..-+|+|+++||++| .|.|-.+ .+|+. .+.|+++||||.| ||+++.
T Consensus 346 ~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrL-id~Lenr------~lvl~---qctyvvldeadrm-iDmgfE 414 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL-IDSLENR------YLVLN---QCTYVVLDEADRM-IDMGFE 414 (673)
T ss_pred cccccceEEEEecccchhhhhhhhhccceeeecCchHH-HHHHHHH------HHHhc---cCceEeccchhhh-hccccc
Confidence 99999999999999998888 8889999999999998 5555433 46777 8999999999999 599988
Q ss_pred ceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHh
Q 005155 145 PLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFY 224 (711)
Q Consensus 145 PLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~ 224 (711)
| ++.+++.+++.... +.| .-+.+|..++ ...|
T Consensus 415 ~---------------dv~~iL~~mPssn~-k~~------tde~~~~~~~--------------------------~~~~ 446 (673)
T KOG0333|consen 415 P---------------DVQKILEQMPSSNA-KPD------TDEKEGEERV--------------------------RKNF 446 (673)
T ss_pred H---------------HHHHHHHhCCcccc-CCC------ccchhhHHHH--------------------------Hhhc
Confidence 7 67777777753100 000 0001111111 1111
Q ss_pred ccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHH
Q 005155 225 RRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKE 304 (711)
Q Consensus 225 ~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~E 304 (711)
...+ .|..-...|.|.....+-
T Consensus 447 ~~~k----------------------------------------------------------~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 447 SSSK----------------------------------------------------------KYRQTVMFTATMPPAVER 468 (673)
T ss_pred cccc----------------------------------------------------------ceeEEEEEecCCChHHHH
Confidence 1111 122233446666655555
Q ss_pred HHHHc-CCCe-EEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 305 FLKMF-QMPV-IEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 305 f~~iY-~l~v-v~IPt-~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
+.+.| .-+| +.|-+ ++|.-|.. ..+++.++++||.++++-+.+. ..-|++||.++++.++.|++.|.+.|+.+.
T Consensus 469 lar~ylr~pv~vtig~~gk~~~rve-Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~ 545 (673)
T KOG0333|consen 469 LARSYLRRPVVVTIGSAGKPTPRVE-QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVT 545 (673)
T ss_pred HHHHHhhCCeEEEeccCCCCccchh-eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEE
Confidence 55444 2333 34433 34444432 3466789999999998777653 456899999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 382 VLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.||++.++.+||-.+-. ++| .+.|.||||.||||+||+
T Consensus 546 tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIp 584 (673)
T KOG0333|consen 546 TLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIP 584 (673)
T ss_pred EeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCC
Confidence 99999888888877766 666 789999999999999996
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=277.32 Aligned_cols=280 Identities=20% Similarity=0.305 Sum_probs=198.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+++|..+++++++|+ |+.+.||+|||++|+||++.+.+. |..|.|++|+++||.|..+++..|...++
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~ 231 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK 231 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC
Confidence 59999999999999998 999999999999999999865542 45699999999999999999999999999
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
+++.+++++.+.. .+...-.+||+++||+.| .|+|.... ..++ .+.++||||||.|| |.+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL-~d~l~~~~------~~l~---~v~~lViDEAd~ml-d~g------- 293 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRL-IDFLESNV------TNLR---RVTYLVLDEADRML-DMG------- 293 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHH-HHHHHcCC------CChh---hCcEEEeehHHhhh-hcc-------
Confidence 9999999987643 333455789999999998 56664321 2244 78999999999986 543
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
+.+++.++...+.+ ++++. +|+++ |...+... |+.++..+.
T Consensus 294 --------f~~~i~~il~~~~~---------~~q~l-----------------~~SAT--~p~~v~~l--~~~l~~~~~- 334 (545)
T PTZ00110 294 --------FEPQIRKIVSQIRP---------DRQTL-----------------MWSAT--WPKEVQSL--ARDLCKEEP- 334 (545)
T ss_pred --------hHHHHHHHHHhCCC---------CCeEE-----------------EEEeC--CCHHHHHH--HHHHhccCC-
Confidence 33466677766643 34444 46665 33334322 334432111
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
+. +-+.. +. ++ ....|.
T Consensus 335 -v~-----i~vg~----~~--------------------l~----~~~~i~----------------------------- 351 (545)
T PTZ00110 335 -VH-----VNVGS----LD--------------------LT----ACHNIK----------------------------- 351 (545)
T ss_pred -EE-----EEECC----Cc--------------------cc----cCCCee-----------------------------
Confidence 10 00000 00 00 000000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
....+....+|...+.+.+......+.++||||++++.++.|+..|...|+++..+|+++.+
T Consensus 352 ------------------q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~ 413 (545)
T PTZ00110 352 ------------------QEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQ 413 (545)
T ss_pred ------------------EEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcH
Confidence 01112334456666666555554578899999999999999999999999999999998777
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| ...|.|||+.|+||+||.
T Consensus 414 ~eR~~il~~F~~G-~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 414 EERTWVLNEFKTG-KSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHHHhcC-CCcEEEEcchhhcCCCcc
Confidence 777755544 444 557999999999999995
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=265.31 Aligned_cols=277 Identities=22% Similarity=0.244 Sum_probs=208.4
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC----CEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.+|++||.-++|+.|+|+ |+-.+||+|||++|+||++ ++|.+. .+.|+||+++||.|.++.+.++-...||.|
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl-~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~ 160 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPIL-QRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRV 160 (476)
T ss_pred CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHH-HHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEE
Confidence 479999999999999999 8899999999999999996 888665 599999999999999999999999999999
Q ss_pred EEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
.++.||++.. .....-..+|+++|||+| .|++...+ ...++ .+.|+|+||||.+| |+-+.
T Consensus 161 ~~lvGG~~m~~q~~~L~kkPhilVaTPGrL-----~dhl~~Tk-gf~le---~lk~LVlDEADrlL-d~dF~-------- 222 (476)
T KOG0330|consen 161 AVLVGGMDMMLQANQLSKKPHILVATPGRL-----WDHLENTK-GFSLE---QLKFLVLDEADRLL-DMDFE-------- 222 (476)
T ss_pred EEEecCchHHHHHHHhhcCCCEEEeCcHHH-----HHHHHhcc-CccHH---HhHHHhhchHHhhh-hhhhH--------
Confidence 9999998844 344566789999999998 45554322 23345 78999999999998 55333
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
+.++.|.+.++. +++.+ ||+++. ...|...++|.- + +. +
T Consensus 223 -------~~ld~ILk~ip~---------erqt~-----------------LfsATM--t~kv~kL~rasl--~-~p---~ 261 (476)
T KOG0330|consen 223 -------EELDYILKVIPR---------ERQTF-----------------LFSATM--TKKVRKLQRASL--D-NP---V 261 (476)
T ss_pred -------HHHHHHHHhcCc---------cceEE-----------------EEEeec--chhhHHHHhhcc--C-CC---e
Confidence 478888888863 56666 688774 334443332211 1 10 0
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
.+. +.-+||.+ . -+.+.
T Consensus 262 -----~v~-------------~s~ky~tv---------------~--------------------------~lkQ~---- 278 (476)
T KOG0330|consen 262 -----KVA-------------VSSKYQTV---------------D--------------------------HLKQT---- 278 (476)
T ss_pred -----EEe-------------ccchhcch---------------H--------------------------Hhhhh----
Confidence 000 00011111 1 11111
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
.+|.....|-..++..+++ ..|.|++|||++...++.++-.|...|+.|--||+.+.+..|
T Consensus 279 -----------------ylfv~~k~K~~yLV~ll~e--~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 279 -----------------YLFVPGKDKDTYLVYLLNE--LAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKR 339 (476)
T ss_pred -----------------eEeccccccchhHHHHHHh--hcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHH
Confidence 1244445555667777765 578999999999999999999999999999999999888888
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
...+-+ +|| .-.|.|||+.|.||.||.
T Consensus 340 lg~l~~Fk~~-~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 340 LGALNKFKAG-ARSILVCTDVASRGLDIP 367 (476)
T ss_pred HHHHHHHhcc-CCcEEEecchhcccCCCC
Confidence 877766 777 668999999999999996
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=262.84 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=191.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----------cCCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----------TGEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----------~G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+++|..+++.+++|+ |+++.||+|||++|++|++-.-+ .+..+.|++|+.+||.|.++++..+...
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~ 109 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQA 109 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhcc
Confidence 69999999999999998 99999999999999999973332 1346999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+|++++++.++.+.... .....+||++|||+.| .++++.. ..... .+.++||||||.|+ |.+
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~---~v~~lViDEad~l~-~~~----- 173 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRL-IDYAKQN------HINLG---AIQVVVLDEADRMF-DLG----- 173 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccccc---cccEEEEecHHHHh-hcc-----
Confidence 99999999988764433 3345689999999998 5666432 12244 79999999999986 432
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
+...+..+...+... ..++.. +|+++.+ ..+.... ...+ .+
T Consensus 174 ----------f~~~i~~i~~~~~~~-------~~~~~~-----------------l~SAT~~--~~~~~~~--~~~~-~~ 214 (423)
T PRK04837 174 ----------FIKDIRWLFRRMPPA-------NQRLNM-----------------LFSATLS--YRVRELA--FEHM-NN 214 (423)
T ss_pred ----------cHHHHHHHHHhCCCc-------cceeEE-----------------EEeccCC--HHHHHHH--HHHC-CC
Confidence 233455555555321 122222 3555432 1122111 1111 12
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
..++. +.
T Consensus 215 p~~i~-------v~------------------------------------------------------------------ 221 (423)
T PRK04837 215 PEYVE-------VE------------------------------------------------------------------ 221 (423)
T ss_pred CEEEE-------Ec------------------------------------------------------------------
Confidence 21111 00
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
|......+. ....++.+..+|...+...+.. .....+||||++...++.+++.|.+.|+++..+|+++
T Consensus 222 ---------~~~~~~~~i-~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~ 289 (423)
T PRK04837 222 ---------PEQKTGHRI-KEELFYPSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDV 289 (423)
T ss_pred ---------CCCcCCCce-eEEEEeCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 000000000 0012345566777776665543 3467899999999999999999999999999999987
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+.+|+..+-+ +.| .-.|.||||+|+||+||.
T Consensus 290 ~~~~R~~~l~~F~~g-~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 290 AQKKRLRILEEFTRG-DLDILVATDVAARGLHIP 322 (423)
T ss_pred ChhHHHHHHHHHHcC-CCcEEEEechhhcCCCcc
Confidence 66667655544 455 568999999999999994
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=262.11 Aligned_cols=275 Identities=20% Similarity=0.236 Sum_probs=186.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cC---------CCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TG---------EGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G---------~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+++|..+++.+++|+ |+.+.||+|||++|++|++ +.| .+ ..+.|++|+.+||.+..+++..+...
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil-~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~ 101 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL-QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKY 101 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 69999999999999988 9999999999999999997 444 21 25999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+++.+..+.++.+...+ +..-.+||+++|++.| .|++..+ ...+. .++++||||||.|+ |.+
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL-~~~~~~~------~~~l~---~v~~lViDEah~ll-~~~----- 165 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL-LDLEHQN------AVKLD---QVEILVLDEADRML-DMG----- 165 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHH-HHHHHcC------Ccccc---cceEEEeecHHHHh-ccc-----
Confidence 99999999998774433 3334679999999987 4444322 12244 79999999999986 432
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
++..+..+...+.. .+++. +|+++. ...+... +..++. +
T Consensus 166 ----------~~~~i~~il~~l~~---------~~q~l-----------------~~SAT~--~~~~~~l--~~~~~~-~ 204 (456)
T PRK10590 166 ----------FIHDIRRVLAKLPA---------KRQNL-----------------LFSATF--SDDIKAL--AEKLLH-N 204 (456)
T ss_pred ----------cHHHHHHHHHhCCc---------cCeEE-----------------EEeCCC--cHHHHHH--HHHHcC-C
Confidence 33445555555532 23333 345442 1222211 122221 1
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
..++. +. ..+.....|.
T Consensus 205 ~~~i~-------~~-----------------------------~~~~~~~~i~--------------------------- 221 (456)
T PRK10590 205 PLEIE-------VA-----------------------------RRNTASEQVT--------------------------- 221 (456)
T ss_pred CeEEE-------Ee-----------------------------ccccccccee---------------------------
Confidence 11110 00 0000000000
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
....+.+...|...+ ..+... ....++||||+|...++.+++.|.+.|+++..+|+++
T Consensus 222 --------------------~~~~~~~~~~k~~~l-~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~ 279 (456)
T PRK10590 222 --------------------QHVHFVDKKRKRELL-SQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNK 279 (456)
T ss_pred --------------------EEEEEcCHHHHHHHH-HHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 112234444444433 333322 3457899999999999999999999999999999987
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+.+++..+-+ +.| ...|.|||++++||+||.
T Consensus 280 ~~~~R~~~l~~F~~g-~~~iLVaTdv~~rGiDip 312 (456)
T PRK10590 280 SQGARTRALADFKSG-DIRVLVATDIAARGLDIE 312 (456)
T ss_pred CHHHHHHHHHHHHcC-CCcEEEEccHHhcCCCcc
Confidence 77777765555 455 568999999999999994
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=266.43 Aligned_cols=277 Identities=17% Similarity=0.201 Sum_probs=187.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----------cCCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----------TGEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----------~G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+|+|..+++.+++|+ |+.+.||+|||++|++|++.+.+ .|..+.|++|+++||.|..+++..+.+.
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~ 222 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKG 222 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCC
Confidence 59999999999999998 99999999999999999975443 3457999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 70 LGLSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 70 LGLtv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+++++.++.++.+.. .++..-++||+++||+.| .|+|..+ ...++ .+.++||||||.|+ |.+
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL-~~~l~~~------~~~l~---~v~~lViDEad~ml-~~g----- 286 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL-IDLLSKH------DIELD---NVSVLVLDEVDCML-ERG----- 286 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Cccch---heeEEEeecHHHHh-hcc-----
Confidence 999998888875533 233445689999999998 5666543 22344 78999999999996 432
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
+...+.++...+. ..++. +|+++. ...+... +..++. +
T Consensus 287 ----------f~~~i~~i~~~l~----------~~q~l-----------------~~SATl--~~~v~~l--~~~~~~-~ 324 (518)
T PLN00206 287 ----------FRDQVMQIFQALS----------QPQVL-----------------LFSATV--SPEVEKF--ASSLAK-D 324 (518)
T ss_pred ----------hHHHHHHHHHhCC----------CCcEE-----------------EEEeeC--CHHHHHH--HHHhCC-C
Confidence 2234444444442 12232 344442 2222211 122211 1
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
+++ |+.
T Consensus 325 --~~~-------i~~----------------------------------------------------------------- 330 (518)
T PLN00206 325 --IIL-------ISI----------------------------------------------------------------- 330 (518)
T ss_pred --CEE-------EEe-----------------------------------------------------------------
Confidence 110 000
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH-CCCCeEEEeCC
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ-QGIPHNVLNAR 386 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~-~gi~~~vLnA~ 386 (711)
-+.+.+.. ......++.....|...+.+.+........|+||||+|...++.+++.|.. .|+++..+|++
T Consensus 331 --------~~~~~~~~-~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~ 401 (518)
T PLN00206 331 --------GNPNRPNK-AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGE 401 (518)
T ss_pred --------CCCCCCCc-ceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCC
Confidence 00001100 001122344445566666665554333345899999999999999999975 69999999998
Q ss_pred CcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.+.+|+..+-. ++| .-.|.|||+.|+||+||.
T Consensus 402 ~~~~eR~~il~~Fr~G-~~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 402 KSMKERREVMKSFLVG-EVPVIVATGVLGRGVDLL 435 (518)
T ss_pred CCHHHHHHHHHHHHCC-CCCEEEEecHhhccCCcc
Confidence 777777655554 566 457999999999999994
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=268.63 Aligned_cols=278 Identities=19% Similarity=0.226 Sum_probs=195.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVHR 68 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y~ 68 (711)
.|+|+|..+++.+++|+ |+++.||+|||++|++|++ +.|. +..|.|++|+.+||.+.++.+..|..
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil-~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM-NRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHH-HHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhc
Confidence 69999999999999998 9999999999999999997 4441 35799999999999999999999999
Q ss_pred hcCCeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCce
Q 005155 69 FLGLSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (711)
Q Consensus 69 ~LGLtv~~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPL 146 (711)
.+|++++.++++.+...+... -.+||+++|++.| +++|+.+-. .... .+.++||||||.|+ |.+
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL-~~~l~~~~~-----~~l~---~v~~lViDEAh~ll-d~g---- 175 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL-IDYVKQHKV-----VSLH---ACEICVLDEADRMF-DLG---- 175 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHH-HHHHHhccc-----cchh---heeeeEecCHHHHh-hcc----
Confidence 999999999999876544433 3579999999988 666653211 1233 78899999999996 432
Q ss_pred eccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Q 005155 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (711)
Q Consensus 147 iiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~ 226 (711)
++..+..+...+... ..+++. +|+++. ...+.... ...+..
T Consensus 176 -----------f~~~i~~il~~lp~~-------~~~q~l-----------------l~SATl--~~~v~~l~--~~~l~~ 216 (572)
T PRK04537 176 -----------FIKDIRFLLRRMPER-------GTRQTL-----------------LFSATL--SHRVLELA--YEHMNE 216 (572)
T ss_pred -----------hHHHHHHHHHhcccc-------cCceEE-----------------EEeCCc--cHHHHHHH--HHHhcC
Confidence 344566666666431 134444 566663 23333222 222221
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
.. .+ +++. ++.+...+..
T Consensus 217 p~-~i-------~v~~-----------------------------~~~~~~~i~q------------------------- 234 (572)
T PRK04537 217 PE-KL-------VVET-----------------------------ETITAARVRQ------------------------- 234 (572)
T ss_pred Cc-EE-------Eecc-----------------------------ccccccceeE-------------------------
Confidence 11 11 1110 0000000100
Q ss_pred HHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
..++....+|...++..+.. ..+.++||||+|+..++.|++.|.+.|+++.++|++
T Consensus 235 ----------------------~~~~~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~ 290 (572)
T PRK04537 235 ----------------------RIYFPADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGD 290 (572)
T ss_pred ----------------------EEEecCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11123345566665555433 467899999999999999999999999999999998
Q ss_pred CcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.+.+|+..+-. +.| ...|+|||++++||+||.
T Consensus 291 l~~~eR~~il~~Fr~G-~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 291 VPQKKRESLLNRFQKG-QLEILVATDVAARGLHID 324 (572)
T ss_pred CCHHHHHHHHHHHHcC-CCeEEEEehhhhcCCCcc
Confidence 777777755554 444 568999999999999995
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=255.30 Aligned_cols=274 Identities=19% Similarity=0.205 Sum_probs=193.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|+|..+.+.+++|+ |+++.||+|||++|.+|+. +.|. +..+.|++|+++||.|-++++..+...+ ++++
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil-~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL-QKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH-HHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 48999999999999998 9999999999999999996 5663 2368999999999999999999998866 8999
Q ss_pred EEEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
..++++.+...+. ..-.+||++||++.| .|+++.. ..... .+.++|+||||.|+ |.+
T Consensus 105 ~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl-~~~l~~~------~~~l~---~l~~lViDEad~~l-~~g---------- 163 (460)
T PRK11776 105 LTLCGGVPMGPQIDSLEHGAHIIVGTPGRI-LDHLRKG------TLDLD---ALNTLVLDEADRML-DMG---------- 163 (460)
T ss_pred EEEECCCChHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CccHH---HCCEEEEECHHHHh-CcC----------
Confidence 9999998754443 334679999999988 4555431 12234 78999999999997 432
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
++..+..+...+++ .+++. +|+++. ...+... +..++. +.
T Consensus 164 -----~~~~l~~i~~~~~~---------~~q~l-----------------l~SAT~--~~~~~~l--~~~~~~-~~---- 203 (460)
T PRK11776 164 -----FQDAIDAIIRQAPA---------RRQTL-----------------LFSATY--PEGIAAI--SQRFQR-DP---- 203 (460)
T ss_pred -----cHHHHHHHHHhCCc---------ccEEE-----------------EEEecC--cHHHHHH--HHHhcC-CC----
Confidence 34566667666653 34444 455553 2333322 223322 11
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
..+.++... ....|..
T Consensus 204 ---~~i~~~~~~------------------------------~~~~i~~------------------------------- 219 (460)
T PRK11776 204 ---VEVKVESTH------------------------------DLPAIEQ------------------------------- 219 (460)
T ss_pred ---EEEEECcCC------------------------------CCCCeeE-------------------------------
Confidence 011111100 0000100
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
..+.....+|+.++...+.. ..+.++||||++.+.++.+++.|.+.|+++..+|+++.+.+|
T Consensus 220 ----------------~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR 281 (460)
T PRK11776 220 ----------------RFYEVSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDR 281 (460)
T ss_pred ----------------EEEEeCcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 01122334577777666543 356789999999999999999999999999999998877777
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+.. +.| ...|.|||++|+||+||.
T Consensus 282 ~~~l~~F~~g-~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 282 DQVLVRFANR-SCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHHcC-CCcEEEEecccccccchh
Confidence 766655 455 568999999999999994
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=264.79 Aligned_cols=275 Identities=19% Similarity=0.209 Sum_probs=194.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|+|..+++.+++|+ |+++.||+|||++|.+|++ ..+ .+..|.|++|+.+||.|-++.+..+...+ |+.+
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll-~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v 106 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL-HNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHH-HHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 58999999999999998 9999999999999999996 444 34579999999999999999999998876 8999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
..++++.+.+.+ ...-.++|++||++.| +|+|+.. ...+. .+.++||||||.|| +.+
T Consensus 107 ~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl-~d~l~r~------~l~l~---~l~~lVlDEAd~ml-~~g---------- 165 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRL-LDHLKRG------TLDLS---KLSGLVLDEADEML-RMG---------- 165 (629)
T ss_pred EEEECCcCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccchh---hceEEEeccHHHHh-hcc----------
Confidence 999998775443 3344689999999998 5655421 12244 78999999999997 332
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
+...+..+...+++ .+++. +|+++.+ ..+... ++.++. +...|
T Consensus 166 -----f~~di~~Il~~lp~---------~~q~l-----------------lfSAT~p--~~i~~i--~~~~l~-~~~~i- 208 (629)
T PRK11634 166 -----FIEDVETIMAQIPE---------GHQTA-----------------LFSATMP--EAIRRI--TRRFMK-EPQEV- 208 (629)
T ss_pred -----cHHHHHHHHHhCCC---------CCeEE-----------------EEEccCC--hhHHHH--HHHHcC-CCeEE-
Confidence 33456666666643 34444 5776642 333322 233332 21111
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
.+. ....+...|+.
T Consensus 209 -----~i~------------------------------~~~~~~~~i~q------------------------------- 222 (629)
T PRK11634 209 -----RIQ------------------------------SSVTTRPDISQ------------------------------- 222 (629)
T ss_pred -----Ecc------------------------------CccccCCceEE-------------------------------
Confidence 110 00001111111
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
..+......|..++...+.. ....++||||+|...++.|++.|.+.|+.+..||+++.+.++
T Consensus 223 ----------------~~~~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 223 ----------------SYWTVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 (629)
T ss_pred ----------------EEEEechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHH
Confidence 01112234577777666543 345689999999999999999999999999999998877777
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+.. +.| .-.|.|||++|+||+||.
T Consensus 285 ~~il~~Fr~G-~~~ILVATdv~arGIDip 312 (629)
T PRK11634 285 EQTLERLKDG-RLDILIATDVAARGLDVE 312 (629)
T ss_pred HHHHHHHhCC-CCCEEEEcchHhcCCCcc
Confidence 766655 445 567999999999999995
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-26 Score=250.18 Aligned_cols=273 Identities=21% Similarity=0.234 Sum_probs=184.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+++|..+++.+++|+ |+.+.||.|||++|++|++ +.|. +..|.|++|+.+||.|-++++..+..++|
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l-~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~ 101 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL-QHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTH 101 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCC
Confidence 58999999999999988 9999999999999999997 4431 34799999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHhcc--CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~~aY--~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
++++.+.++.+...+...+ .+||+++|++.| ++++... ....+ .+.++||||||.|+ |.++
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~~~~~------~~~~~---~v~~lViDEah~~l-~~~~------ 164 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRL-LQYIKEE------NFDCR---AVETLILDEADRML-DMGF------ 164 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CcCcc---cCCEEEEECHHHHh-CCCc------
Confidence 9999999998765554443 579999999988 5665432 12244 89999999999996 4321
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
...+..+...+.. .+++. +|+++.. ...+... +..++.
T Consensus 165 ---------~~~~~~i~~~~~~---------~~q~~-----------------~~SAT~~-~~~~~~~--~~~~~~---- 202 (434)
T PRK11192 165 ---------AQDIETIAAETRW---------RKQTL-----------------LFSATLE-GDAVQDF--AERLLN---- 202 (434)
T ss_pred ---------HHHHHHHHHhCcc---------ccEEE-----------------EEEeecC-HHHHHHH--HHHHcc----
Confidence 2233333333321 12222 3343321 0111111 111111
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
T Consensus 203 -------------------------------------------------------------------------------- 202 (434)
T PRK11192 203 -------------------------------------------------------------------------------- 202 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCe-EEe-CCCCCcccccCCCeEE-eC-hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 310 QMPV-IEV-PTNLPNIRVDLPIQSF-AT-ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 310 ~l~v-v~I-Pt~~p~~R~d~~d~i~-~t-~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
-.+ +.+ |... .+......++ .. ...|...+...+ +. ....++||||+|.+.++.++..|...|+++..+|+
T Consensus 203 -~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~l~-~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g 277 (434)
T PRK11192 203 -DPVEVEAEPSRR--ERKKIHQWYYRADDLEHKTALLCHLL-KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEG 277 (434)
T ss_pred -CCEEEEecCCcc--cccCceEEEEEeCCHHHHHHHHHHHH-hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecC
Confidence 110 011 1100 0001111111 22 234544443333 21 35678999999999999999999999999999999
Q ss_pred CCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 386 ~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++.+.+|+..+-. +.| ...|.|||++++||+||.
T Consensus 278 ~~~~~~R~~~l~~f~~G-~~~vLVaTd~~~~GiDip 312 (434)
T PRK11192 278 EMVQAKRNEAIKRLTDG-RVNVLVATDVAARGIDID 312 (434)
T ss_pred CCCHHHHHHHHHHHhCC-CCcEEEEccccccCccCC
Confidence 8777777766555 555 568999999999999994
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=247.63 Aligned_cols=278 Identities=19% Similarity=0.229 Sum_probs=184.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.||++|..++..+++|+ |+.+.||+|||++|.+|++-..+. +..+.|++|+.+||.+.++++..+...
T Consensus 109 ~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~ 188 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY 188 (475)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 58999999999999998 999999999999999999744333 346999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHH--HHh-ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCce
Q 005155 70 LGLSVGLIQRGMIPEE--RRS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (711)
Q Consensus 70 LGLtv~~i~~~~~~~~--r~~-aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPL 146 (711)
+|+.+..+.++.+... +.. .-.+||+++|++.| .+++. .. ...++ .+.++||||+|.++ +.+
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~L-l~~~~----~~--~~~l~---~l~~lViDEah~l~-~~~---- 253 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL-LDFNQ----RG--EVHLD---MVEVMVLDEADRML-DMG---- 253 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHH-HHHHH----cC--Ccccc---cCceEEechHHHHH-hcc----
Confidence 9999999998866332 222 23579999999887 33332 11 23455 89999999999986 432
Q ss_pred eccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Q 005155 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (711)
Q Consensus 147 iiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~ 226 (711)
+.+.+..+...+... ..+++. +++++. ...+.+. +..++.
T Consensus 254 -----------~~~~l~~i~~~~~~~-------~~~q~i-----------------~~SAT~--~~~~~~~--~~~~~~- 293 (475)
T PRK01297 254 -----------FIPQVRQIIRQTPRK-------EERQTL-----------------LFSATF--TDDVMNL--AKQWTT- 293 (475)
T ss_pred -----------cHHHHHHHHHhCCCC-------CCceEE-----------------EEEeec--CHHHHHH--HHHhcc-
Confidence 233555555555321 122333 344442 1112221 122211
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
+. + ++-+. +++.....+.
T Consensus 294 ~~--~-----~v~~~-----------------------------~~~~~~~~~~-------------------------- 311 (475)
T PRK01297 294 DP--A-----IVEIE-----------------------------PENVASDTVE-------------------------- 311 (475)
T ss_pred CC--E-----EEEec-----------------------------cCcCCCCccc--------------------------
Confidence 11 0 00000 0000000000
Q ss_pred HHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
.........+|+..+...+.. .....+||||+|.+.++.+++.|.+.|+++..+++.
T Consensus 312 ---------------------~~~~~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~ 368 (475)
T PRK01297 312 ---------------------QHVYAVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGD 368 (475)
T ss_pred ---------------------EEEEEecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 001122334566555554433 345689999999999999999999999999999998
Q ss_pred CcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
..+.+|+..+-. +.| .-.|.||||+++||+||.
T Consensus 369 ~~~~~R~~~~~~Fr~G-~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 369 VPQHKRIKTLEGFREG-KIRVLVATDVAGRGIHID 402 (475)
T ss_pred CCHHHHHHHHHHHhCC-CCcEEEEccccccCCccc
Confidence 666666544433 456 568999999999999993
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=236.21 Aligned_cols=280 Identities=21% Similarity=0.260 Sum_probs=208.3
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLt 73 (711)
++||-..++-++.|+ ++.++||+|||++|++|++-.-+ .|-+|.||+|+++||-|.+.+...+..+. +++
T Consensus 106 T~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~ 185 (543)
T KOG0342|consen 106 TPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESIT 185 (543)
T ss_pred hHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcc
Confidence 579999999999999 99999999999999999983333 35589999999999999999999999999 999
Q ss_pred EEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 74 VGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 74 v~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
|+.+.||.. .++.+..-.|.|+++|||+| .|++...+ ....| .+.++|+||||.+| |.++
T Consensus 186 v~~viGG~~~~~e~~kl~k~~niliATPGRL-----lDHlqNt~-~f~~r---~~k~lvlDEADrlL-d~GF-------- 247 (543)
T KOG0342|consen 186 VGIVIGGNNFSVEADKLVKGCNILIATPGRL-----LDHLQNTS-GFLFR---NLKCLVLDEADRLL-DIGF-------- 247 (543)
T ss_pred eEEEeCCccchHHHHHhhccccEEEeCCchH-----HhHhhcCC-cchhh---ccceeEeecchhhh-hccc--------
Confidence 999999855 55566666999999999998 67766543 34556 88999999999997 7753
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
-..+.+++..++ ++++.+ |||++. ...|.+. |+-.+++|.-||
T Consensus 248 -------~~di~~Ii~~lp---------k~rqt~-----------------LFSAT~--~~kV~~l--~~~~L~~d~~~v 290 (543)
T KOG0342|consen 248 -------EEDVEQIIKILP---------KQRQTL-----------------LFSATQ--PSKVKDL--ARGALKRDPVFV 290 (543)
T ss_pred -------HHHHHHHHHhcc---------ccceee-----------------EeeCCC--cHHHHHH--HHHhhcCCceEe
Confidence 246888888886 367776 799875 3445543 344456655443
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l 311 (711)
=. +|...+... |+++ |
T Consensus 291 ~~------~d~~~~~Th----------------e~l~-------------Q----------------------------- 306 (543)
T KOG0342|consen 291 NV------DDGGERETH----------------ERLE-------------Q----------------------------- 306 (543)
T ss_pred ec------CCCCCcchh----------------hccc-------------c-----------------------------
Confidence 21 222111111 1110 0
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchH
Q 005155 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (711)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~ 391 (711)
-.+..+...++..+...+++.. +.-.|+|||+|+......+.+|....+|+--+|++++|..
T Consensus 307 -----------------gyvv~~~~~~f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 307 -----------------GYVVAPSDSRFSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNK 368 (543)
T ss_pred -----------------eEEeccccchHHHHHHHHHHhc-CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccc
Confidence 1223344455667777776643 3378999999999999999999999999999999977766
Q ss_pred hHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 392 REAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 392 ~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|-...-..--...-|.++||.|.||.||.
T Consensus 369 RT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 369 RTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred cchHHHHHhhcccceEEecchhhccCCCC
Confidence 65443332223456999999999999994
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=232.29 Aligned_cols=281 Identities=21% Similarity=0.205 Sum_probs=196.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|||.-|++.++.|+ |..++||+|||.+|+||.+ +-|. |.-..|+||+++||-|.+|+|.-+-+.++++|+
T Consensus 29 ~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil-~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~ 107 (442)
T KOG0340|consen 29 KPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPIL-NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVS 107 (442)
T ss_pred CCCchHhhhhHHHhcccccccccccCCCcchhhhHHHH-HhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEE
Confidence 59999999999999999 9999999999999999996 8886 556889999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+|+++++ .+.....-..||+.+|++++ -|.|+.|.... ..+.. .+.|+++||||.|| +. .
T Consensus 108 vivGG~d~i~qa~~L~~rPHvVvatPGRl-ad~l~sn~~~~--~~~~~---rlkflVlDEADrvL-~~-~---------- 169 (442)
T KOG0340|consen 108 VIVGGTDMIMQAAILSDRPHVVVATPGRL-ADHLSSNLGVC--SWIFQ---RLKFLVLDEADRVL-AG-C---------- 169 (442)
T ss_pred EEEccHHHhhhhhhcccCCCeEecCcccc-ccccccCCccc--hhhhh---ceeeEEecchhhhh-cc-c----------
Confidence 9999976 45566667789999999998 34444332211 12344 79999999999998 21 1
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc--ceE
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV--QYI 231 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~--dYi 231 (711)
+-..+..+.+.+ |+.|+.+ ||+++. ...++.+..+.-.. -|.
T Consensus 170 ----f~d~L~~i~e~l---------P~~RQtL-----------------lfSATi------td~i~ql~~~~i~k~~a~~ 213 (442)
T KOG0340|consen 170 ----FPDILEGIEECL---------PKPRQTL-----------------LFSATI------TDTIKQLFGCPITKSIAFE 213 (442)
T ss_pred ----hhhHHhhhhccC---------CCccceE-----------------EEEeeh------hhHHHHhhcCCcccccceE
Confidence 111233333333 3345655 566542 12222222111010 011
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l 311 (711)
+ |+..|+++ +++ |.
T Consensus 214 ~-----------------------------e~~~~vst-vet-------------------------------L~----- 227 (442)
T KOG0340|consen 214 L-----------------------------EVIDGVST-VET-------------------------------LY----- 227 (442)
T ss_pred E-----------------------------eccCCCCc-hhh-------------------------------hh-----
Confidence 1 11111110 000 00
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhh-cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
.-.|+...+.|-.-++.-+....+ ....|+||+++...++.|+..|+..++...-||+-+.|.
T Consensus 228 ----------------q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~ 291 (442)
T KOG0340|consen 228 ----------------QGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQK 291 (442)
T ss_pred ----------------hheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHH
Confidence 112355555565555555544333 467899999999999999999999999999999977777
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+|-+.+-+ +++ .-.|.|||+.|.||.||.
T Consensus 292 eR~~aLsrFrs~-~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 292 ERLAALSRFRSN-AARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHHHHHhhc-CccEEEEechhhcCCCCC
Confidence 77777766 454 668999999999999995
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=236.31 Aligned_cols=277 Identities=19% Similarity=0.214 Sum_probs=205.0
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCC--CEEEEecCHHHHHHHHHHHHHHhhh-c
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGE--GVHVVTVNDYLAQRDAEWMERVHRF-L 70 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~--~VhVvT~NdyLA~RDae~~~~~y~~-L 70 (711)
-+|||..+++.|+.++ ++|..||+||||+|++|++ ..+ .+. +..||+|+++||.|..+-..+|.+. .
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~l-e~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPML-EIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHH-HHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 4799999999999988 9999999999999999996 555 122 6789999999999999999999886 7
Q ss_pred CCeEEEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 71 GLSVGLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 71 GLtv~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
.+++-+++||++.++--.. -.+.|++||||+| +|.+...+ +....| .+.++|+||||..| |.++
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL-~di~~~~~----~~l~~r---sLe~LVLDEADrLl-dmgF---- 174 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRL-LDILQREA----EKLSFR---SLEILVLDEADRLL-DMGF---- 174 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhH-HHHHhchh----hhcccc---ccceEEecchHhHh-cccH----
Confidence 9999999999886654433 4678999999998 66665433 234456 99999999999986 7753
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
-..++.|..+|++ +|..= |||++. ...+.+.. +..+. |
T Consensus 175 -----------e~~~n~ILs~LPK---------QRRTG-----------------LFSATq--~~~v~dL~--raGLR-N 212 (567)
T KOG0345|consen 175 -----------EASVNTILSFLPK---------QRRTG-----------------LFSATQ--TQEVEDLA--RAGLR-N 212 (567)
T ss_pred -----------HHHHHHHHHhccc---------ccccc-----------------cccchh--hHHHHHHH--Hhhcc-C
Confidence 3478899999974 44433 899874 23344322 22221 2
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCce--eeeeeeehhHhhhcCccccccCCcccHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~--t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef 305 (711)
. +. |.+..++. |.++...
T Consensus 213 p--------------------------------v~----V~V~~k~~~~tPS~L~~------------------------ 232 (567)
T KOG0345|consen 213 P--------------------------------VR----VSVKEKSKSATPSSLAL------------------------ 232 (567)
T ss_pred c--------------------------------ee----eeecccccccCchhhcc------------------------
Confidence 1 11 11122221 2221111
Q ss_pred HHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEE
Q 005155 306 LKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVL 383 (711)
Q Consensus 306 ~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vL 383 (711)
..+.....+|...+++.+.. ..-..++||++|...+++.+..|... +++.--+
T Consensus 233 -----------------------~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~i 287 (567)
T KOG0345|consen 233 -----------------------EYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSI 287 (567)
T ss_pred -----------------------eeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEe
Confidence 11234567899988888765 45678999999999999999888764 5677789
Q ss_pred eCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 384 NARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 384 nA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|++++|.+|-..+-+.--.+..|.++|+.|.||+||.
T Consensus 288 HGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip 324 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIP 324 (567)
T ss_pred cchhcchhHHHHHHHHHhccCceEEeehhhhccCCCC
Confidence 9998888887777665556889999999999999995
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-25 Score=240.37 Aligned_cols=279 Identities=21% Similarity=0.275 Sum_probs=209.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--------~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|++||--+++.-++|+ |+-.+||+||||+|++|++ .+| .|-|+.||+|+++||-|.++-+..+.++-+
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvl-E~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVL-EALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred cHHHHHHhhcchhccCcccccccccCCCceeeehHHHH-HHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 46789999999999999 9999999999999999996 666 477999999999999999999999999999
Q ss_pred CeEEEEcCCCC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccC
Q 005155 72 LSVGLIQRGMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (711)
Q Consensus 72 Ltv~~i~~~~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg 150 (711)
+|+|+|.||.+ ..++...-+++|.+||||+| ..||..++ ..... ++.++|+||||+|| |+++.
T Consensus 170 fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRL-----LQHmde~~-~f~t~---~lQmLvLDEADR~L-DMGFk------ 233 (758)
T KOG0343|consen 170 FSAGLIIGGKDVKFELERISQMNILVCTPGRL-----LQHMDENP-NFSTS---NLQMLVLDEADRML-DMGFK------ 233 (758)
T ss_pred cccceeecCchhHHHHHhhhcCCeEEechHHH-----HHHhhhcC-CCCCC---cceEEEeccHHHHH-HHhHH------
Confidence 99999999987 44666678899999999997 56776543 22233 89999999999997 87643
Q ss_pred CCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcce
Q 005155 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dY 230 (711)
..++.|+..|++ .||.+ |||++-. .-+... | .|--+|..|
T Consensus 234 ---------~tL~~Ii~~lP~---------~RQTL-----------------LFSATqt--~svkdL--a-RLsL~dP~~ 273 (758)
T KOG0343|consen 234 ---------KTLNAIIENLPK---------KRQTL-----------------LFSATQT--KSVKDL--A-RLSLKDPVY 273 (758)
T ss_pred ---------HHHHHHHHhCCh---------hheee-----------------eeecccc--hhHHHH--H-HhhcCCCcE
Confidence 478899999975 67777 7887631 122222 1 222356666
Q ss_pred EEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC
Q 005155 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 310 (711)
Q Consensus 231 iV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~ 310 (711)
|-. | ++.+ ++|- .-|++.|
T Consensus 274 vsv------------------------h-------------e~a~-------------------~atP----~~L~Q~y- 292 (758)
T KOG0343|consen 274 VSV------------------------H-------------ENAV-------------------AATP----SNLQQSY- 292 (758)
T ss_pred EEE------------------------e-------------cccc-------------------ccCh----hhhhheE-
Confidence 541 1 0000 0000 0112222
Q ss_pred CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEEeCCCc
Q 005155 311 MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLNARPK 388 (711)
Q Consensus 311 l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vLnA~~~ 388 (711)
+.+...+|...+-.-|... -....|||..|..++..++..+.+. |+|.--||++++
T Consensus 293 --------------------~~v~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~ 350 (758)
T KOG0343|consen 293 --------------------VIVPLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMS 350 (758)
T ss_pred --------------------EEEehhhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchh
Confidence 2334567888888888763 4568999999999999999999874 899999999887
Q ss_pred chHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|..|-...-..--....|..||++|.||.|+.
T Consensus 351 Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 351 QKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 76664333333333668999999999999995
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=239.52 Aligned_cols=283 Identities=21% Similarity=0.245 Sum_probs=212.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-------------CCEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-------------EGVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G-------------~~VhVvT~NdyLA~RDae~~~~~ 66 (711)
+|.|||-.+++++.+|+ +|+.+||+|||.+|++|+.-.++.. .++.|++||++||.|.+++.++|
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 69999999999999998 9999999999999999998666642 46999999999999999999999
Q ss_pred hhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh-cCC
Q 005155 67 HRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-EGR 143 (711)
Q Consensus 67 y~~LGLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD-ea~ 143 (711)
--..++.+..++++.+ .+.+...-+|||.++||++| -|.+... ..-+. .+.|+|+||||.|| | .++
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL-~d~~e~g------~i~l~---~~k~~vLDEADrMl-D~mgF 244 (482)
T KOG0335|consen 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRL-KDLIERG------KISLD---NCKFLVLDEADRML-DEMGF 244 (482)
T ss_pred cccccceeeeeeCCcchhhhhhhhccCccEEEecCchh-hhhhhcc------eeehh---hCcEEEecchHHhh-hhccc
Confidence 9999999999999854 45556667899999999998 3444332 22333 67899999999997 7 776
Q ss_pred CceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHH
Q 005155 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (711)
Q Consensus 144 tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l 223 (711)
-| .+.+++.++.... ...++.. ||+++. +..++. +.+..+
T Consensus 245 ~p---------------~Ir~iv~~~~~~~-----~~~~qt~-----------------mFSAtf--p~~iq~-l~~~fl 284 (482)
T KOG0335|consen 245 EP---------------QIRKIVEQLGMPP-----KNNRQTL-----------------LFSATF--PKEIQR-LAADFL 284 (482)
T ss_pred cc---------------cHHHHhcccCCCC-----ccceeEE-----------------EEeccC--Chhhhh-hHHHHh
Confidence 66 7888888775321 1245555 788874 455555 433333
Q ss_pred hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHH
Q 005155 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (711)
Q Consensus 224 ~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~ 303 (711)
..+ |+.-
T Consensus 285 -~~~--yi~l---------------------------------------------------------------------- 291 (482)
T KOG0335|consen 285 -KDN--YIFL---------------------------------------------------------------------- 291 (482)
T ss_pred -hcc--ceEE----------------------------------------------------------------------
Confidence 212 4441
Q ss_pred HHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhh---hcC----CcEEEEecchhhHHHHHHHHHHC
Q 005155 304 EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF---RLG----RPVLVGSTSVENSEYLSDLLKQQ 376 (711)
Q Consensus 304 Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~---~~g----rPVLV~t~Si~~SE~Ls~~L~~~ 376 (711)
.|..|-+..+... .-.+|..+.+|..++++...... .++ .-+|||+++++.+..+...|...
T Consensus 292 --------aV~rvg~~~~ni~---q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 292 --------AVGRVGSTSENIT---QKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred --------EEeeeccccccce---eEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 1111111112111 12447778888888888776443 122 24999999999999999999999
Q ss_pred CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 377 GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 377 gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+++.-+|+...+.++|..+-. +.| +-.|.||||+|.||.||+
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNG-KAPVLVATNVAARGLDIP 404 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcC-CcceEEEehhhhcCCCCC
Confidence 9999999998777778877766 445 567999999999999996
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=234.78 Aligned_cols=277 Identities=22% Similarity=0.259 Sum_probs=201.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
+|.|+|-.+.+++++|+ |.-.+||.||||+++||.+++-+ .|.+|.|+||+++||.+. |-+-..|.+-
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqi-e~e~~kysyn 320 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQI-EGEVKKYSYN 320 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHH-HhHHhHhhhc
Confidence 69999999999999999 88889999999999999987644 356899999999999976 4556689999
Q ss_pred CCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
|+...|++++-+..+. ...-+.+|+.+||++| -|..-+|. ..++ ...|+++||||.|| |+++.|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrl-ndL~~~n~------i~l~---siTYlVlDEADrML-DMgFEp--- 386 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRL-NDLQMDNV------INLA---SITYLVLDEADRML-DMGFEP--- 386 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchH-hhhhhcCe------eeee---eeEEEEecchhhhh-cccccH---
Confidence 9999999987653333 3446789999999998 45444443 2355 89999999999997 888877
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
++.++.-...+ +|++.+|. ++ |++-|... |..+++.-
T Consensus 387 ------------qIrkilldiRP---------DRqtvmTS-----------------AT--WP~~VrrL--a~sY~Kep- 423 (629)
T KOG0336|consen 387 ------------QIRKILLDIRP---------DRQTVMTS-----------------AT--WPEGVRRL--AQSYLKEP- 423 (629)
T ss_pred ------------HHHHHhhhcCC---------cceeeeec-----------------cc--CchHHHHH--HHHhhhCc-
Confidence 55555444433 35555333 22 44444432 33333311
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
+-+-..++.+
T Consensus 424 --------------------------------------~~v~vGsLdL-------------------------------- 433 (629)
T KOG0336|consen 424 --------------------------------------MIVYVGSLDL-------------------------------- 433 (629)
T ss_pred --------------------------------------eEEEecccce--------------------------------
Confidence 1111111111
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
+.+-+-+ ...+..++.+|| +++....+.+...-.|+|||.+.-.++.||.-|.-.||..+-||++.+
T Consensus 434 -----~a~~sVk-------Q~i~v~~d~~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~ 500 (629)
T KOG0336|consen 434 -----VAVKSVK-------QNIIVTTDSEKL-EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNRE 500 (629)
T ss_pred -----eeeeeee-------eeEEecccHHHH-HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChh
Confidence 1111111 012345677788 466666666778889999999999999999999999999999999888
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|..+|..+-. +.| .-+|+|||++|.||+|+.
T Consensus 501 Q~DrE~al~~~ksG-~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 501 QSDREMALEDFKSG-EVRILVATDLASRGLDVP 532 (629)
T ss_pred hhhHHHHHHhhhcC-ceEEEEEechhhcCCCch
Confidence 8888887765 556 558999999999999994
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=234.19 Aligned_cols=269 Identities=16% Similarity=0.184 Sum_probs=178.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++.++++|+ ++.|.||.|||++|.+|++. .+..+.||+|+..|+.+..+.+. .+|+++..+.+
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~----~~gi~~~~l~~ 83 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK----ASGIPATFLNS 83 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH----HcCCcEEEEeC
Confidence 47899999999999998 99999999999999999973 46778999999999987666654 57999999888
Q ss_pred CCCHHHHHhcc------CCCeEEECCCchhhHH-HHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 80 GMIPEERRSNY------RCDITYTNNSELGFDY-LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 80 ~~~~~~r~~aY------~~DI~YgT~~elgfDy-LrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+.+..+++..+ ..+|+|+||..+.-.. +...+. ... .+.++||||||.++ +-+..
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~------~~~---~i~~iViDEaH~i~-~~g~~-------- 145 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE------ERK---GITLIAVDEAHCIS-QWGHD-------- 145 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH------hcC---CcCEEEEeCCcccC-ccccc--------
Confidence 87766544332 3689999998763221 222221 123 79999999999985 21100
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
-...|..+..+...++ +
T Consensus 146 --fr~~~~~l~~l~~~~~--------------------------------------------------------~----- 162 (470)
T TIGR00614 146 --FRPDYKALGSLKQKFP--------------------------------------------------------N----- 162 (470)
T ss_pred --cHHHHHHHHHHHHHcC--------------------------------------------------------C-----
Confidence 0000100000000000 0
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM 311 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l 311 (711)
..+.++|+|+... .+++.+..++
T Consensus 163 --------------------------------------------------------~~~l~lTAT~~~~~~~di~~~l~l 186 (470)
T TIGR00614 163 --------------------------------------------------------VPIMALTATASPSVREDILRQLNL 186 (470)
T ss_pred --------------------------------------------------------CceEEEecCCCHHHHHHHHHHcCC
Confidence 1245777777654 3445555444
Q ss_pred C---eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 312 P---VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 312 ~---vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
. ++....++|..+ ..+.......+..+.+.+.. ...+..+||||.|++.++.+++.|.+.|+++..+|+++.
T Consensus 187 ~~~~~~~~s~~r~nl~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~ 261 (470)
T TIGR00614 187 KNPQIFCTSFDRPNLY----YEVRRKTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLE 261 (470)
T ss_pred CCCcEEeCCCCCCCcE----EEEEeCCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCC
Confidence 2 223333343322 11111122344455555543 246778899999999999999999999999999999876
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
..+|+..+-. ..| .-.|.|||+++|||+|+.
T Consensus 262 ~~eR~~i~~~F~~g-~~~vLVaT~~~~~GID~p 293 (470)
T TIGR00614 262 ISARDDVHHKFQRD-EIQVVVATVAFGMGINKP 293 (470)
T ss_pred HHHHHHHHHHHHcC-CCcEEEEechhhccCCcc
Confidence 6666654444 455 568999999999999995
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=247.58 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=102.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-c--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-T--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
+||++|..+++.+++|+ |+...||+|||++|.||++ .+| . +..+.+++|++.||.+..+.+..+. ..|++++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL-~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVL-SALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHH-HHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEE
Confidence 69999999999999998 9999999999999999996 555 3 4579999999999999999999886 56899998
Q ss_pred EcCCCCHHHHHhc-cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 77 IQRGMIPEERRSN-YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 77 i~~~~~~~~r~~a-Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
..|+.+.++|+.. -+++|+++||..+....|.++.. -...++ ++.++||||||.++
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~---~~~~l~---~l~~vViDEah~~~ 170 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHAR---WARFLR---RLRYVVIDECHSYR 170 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhH---HHHHHh---cCCEEEEeChhhcc
Confidence 8888887666543 35899999996553333322211 112355 89999999999974
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=224.77 Aligned_cols=126 Identities=18% Similarity=0.270 Sum_probs=102.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..+...+.+|+ |+.+.||+|||++|.+|+. ..+ .+..+.+++|+..||.|-.+.+..+...+++.+.
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l-~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~ 128 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAAL-QLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCH 128 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEE
Confidence 58999999999999988 9999999999999999987 444 3567999999999999999999999999999998
Q ss_pred EEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...++...... ...-.+||+++|++.+ ++.++.. ..... .++++||||||.++
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~---~i~lvViDEah~~~ 183 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRV-YDMIDKR------HLRVD---DLKLFILDEADEML 183 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHH-HHHHHhC------Ccccc---cccEEEEecHHHHH
Confidence 88887654332 2233579999999987 5555432 12244 79999999999986
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=231.77 Aligned_cols=281 Identities=20% Similarity=0.230 Sum_probs=199.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+|+|..++|+-+-|+ +|...||+|||.+|+||.+-.-|. --.|.|++|+++||.|-+.-..++.+|..|+
T Consensus 203 ~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~ 282 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDIT 282 (691)
T ss_pred CCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccce
Confidence 59999999999888888 899999999999999999743332 2379999999999999999999999999999
Q ss_pred EEEEcCCCCH--HHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 74 VGLIQRGMIP--EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 74 v~~i~~~~~~--~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
||+..||++- |+.-..-..|||++|||+| .|.||+... ..+. ++.++|+||||+|| |++
T Consensus 283 ~~L~vGGL~lk~QE~~LRs~PDIVIATPGRl-IDHlrNs~s-----f~ld---siEVLvlDEADRML-eeg--------- 343 (691)
T KOG0338|consen 283 VGLAVGGLDLKAQEAVLRSRPDIVIATPGRL-IDHLRNSPS-----FNLD---SIEVLVLDEADRML-EEG--------- 343 (691)
T ss_pred eeeeecCccHHHHHHHHhhCCCEEEecchhH-HHHhccCCC-----cccc---ceeEEEechHHHHH-HHH---------
Confidence 9999999884 4444556679999999999 555555433 2344 79999999999998 554
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
+-.+++++++.+++ +||.+ |||+++ ...|.... .-.| .+-+.
T Consensus 344 ------FademnEii~lcpk---------~RQTm-----------------LFSATM--teeVkdL~-slSL-~kPvr-- 385 (691)
T KOG0338|consen 344 ------FADEMNEIIRLCPK---------NRQTM-----------------LFSATM--TEEVKDLA-SLSL-NKPVR-- 385 (691)
T ss_pred ------HHHHHHHHHHhccc---------cccce-----------------eehhhh--HHHHHHHH-Hhhc-CCCeE--
Confidence 34579999999964 78877 899874 33444332 1122 22211
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l 311 (711)
+.||+++-+.. +| .+||
T Consensus 386 ------ifvd~~~~~a~-------~L--------------------------------------------tQEF------ 402 (691)
T KOG0338|consen 386 ------IFVDPNKDTAP-------KL--------------------------------------------TQEF------ 402 (691)
T ss_pred ------EEeCCccccch-------hh--------------------------------------------hHHH------
Confidence 22444221111 11 1222
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchH
Q 005155 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (711)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~ 391 (711)
+.|-+.+.-- +-.-++..|.+.. ..-++||+.+.+.+..+.=+|-=.|+...-||+...|.+
T Consensus 403 --iRIR~~re~d--------------Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~Q 464 (691)
T KOG0338|consen 403 --IRIRPKREGD--------------REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQ 464 (691)
T ss_pred --heeccccccc--------------cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHH
Confidence 2233322211 1112233333322 457999999999999999999889999888999765655
Q ss_pred hHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 392 REAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 392 ~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|=..+-..--..-.|+|||++|.||.||.
T Consensus 465 RlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 465 RLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 54444443334668999999999999995
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=234.42 Aligned_cols=266 Identities=18% Similarity=0.198 Sum_probs=177.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++..+++|+ ++.|.||.|||++|.+|+++ .+..+.||+|...|+.+..+.+. .+|+.+.++.+
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~---~~g~tlVisPl~sL~~dqv~~l~----~~gi~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV---LDGLTLVVSPLISLMKDQVDQLL----ANGVAAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH---cCCCEEEEecHHHHHHHHHHHHH----HcCCcEEEEcC
Confidence 47799999999999988 99999999999999999973 35579999999999988776654 46999999888
Q ss_pred CCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 80 GMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 80 ~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.+.+++...+ ..+|+|+||..+.-+.+.+.+. .. ++.++||||||.++ +-+..
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~-------~~---~l~~iVIDEaH~i~-~~G~~--------- 157 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLA-------HW---NPALLAVDEAHCIS-QWGHD--------- 157 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHh-------hC---CCCEEEEeCccccc-cccCc---------
Confidence 88766554333 3589999999885433333222 22 68999999999984 21100
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
-...|..+..+...++ +
T Consensus 158 -fr~~y~~L~~l~~~~p--------------------------------------------------------~------ 174 (607)
T PRK11057 158 -FRPEYAALGQLRQRFP--------------------------------------------------------T------ 174 (607)
T ss_pred -ccHHHHHHHHHHHhCC--------------------------------------------------------C------
Confidence 0000111111100000 0
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~ 312 (711)
..+.++|+|+... ..++.+.+++.
T Consensus 175 -------------------------------------------------------~~~v~lTAT~~~~~~~di~~~l~l~ 199 (607)
T PRK11057 175 -------------------------------------------------------LPFMALTATADDTTRQDIVRLLGLN 199 (607)
T ss_pred -------------------------------------------------------CcEEEEecCCChhHHHHHHHHhCCC
Confidence 0134677777653 33455555542
Q ss_pred --eEEeC-CCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 --VIEVP-TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 --vv~IP-t~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
++.+. .++|..+. . ......+...++..+.. ..+.++||||.|++.++.++..|.+.|+++..+||++..
T Consensus 200 ~~~~~~~~~~r~nl~~----~-v~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~ 272 (607)
T PRK11057 200 DPLIQISSFDRPNIRY----T-LVEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDN 272 (607)
T ss_pred CeEEEECCCCCCccee----e-eeeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCH
Confidence 23232 23333221 1 11122334445555543 467899999999999999999999999999999998766
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| .-.|.|||+++|||+||.
T Consensus 273 ~~R~~i~~~F~~g-~~~VLVaT~a~~~GIDip 303 (607)
T PRK11057 273 DVRADVQEAFQRD-DLQIVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHHHHHHHCC-CCCEEEEechhhccCCCC
Confidence 666544433 345 567999999999999994
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=235.92 Aligned_cols=297 Identities=21% Similarity=0.248 Sum_probs=196.0
Q ss_pred CCCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHH---------HHH-----cCCC--EEEEecCHHHHHHHHH
Q 005155 1 MRHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYL---------NAL-----TGEG--VHVVTVNDYLAQRDAE 61 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l---------~AL-----~G~~--VhVvT~NdyLA~RDae 61 (711)
.+|+++|.+..++...|+ +.-+.||+||||+|++|++- +.+ .+.+ ..|+||+++||-|...
T Consensus 202 s~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~ 281 (731)
T KOG0347|consen 202 SRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQ 281 (731)
T ss_pred CCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHH
Confidence 379999999999999996 88899999999999999974 222 2334 8899999999999999
Q ss_pred HHHHHhhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHH-HhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 62 WMERVHRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLR-DNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 62 ~~~~~y~~LGLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLr-D~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
-+..+..+-|++|..|+||+. .|+|-..|..|||++|||+| +..+. +|.- -...+ .+.++||||+|+|+
T Consensus 282 Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRl-weli~e~n~~----l~~~k---~vkcLVlDEaDRmv 353 (731)
T KOG0347|consen 282 HLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRL-WELIEEDNTH----LGNFK---KVKCLVLDEADRMV 353 (731)
T ss_pred HHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHH-HHHHHhhhhh----hhhhh---hceEEEEccHHHHh
Confidence 999999999999999999988 56777888889999999998 33332 2211 11233 78999999999998
Q ss_pred hhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHH
Q 005155 139 IDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNAL 218 (711)
Q Consensus 139 iDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL 218 (711)
-+. -|..+.++.+.|.+ ..+. .++|.+ .||++..+.+...
T Consensus 354 ekg----------------hF~Els~lL~~L~e-~~~~---~qrQTl-----------------VFSATlt~~~~~~--- 393 (731)
T KOG0347|consen 354 EKG----------------HFEELSKLLKHLNE-EQKN---RQRQTL-----------------VFSATLTLVLQQP--- 393 (731)
T ss_pred hhc----------------cHHHHHHHHHHhhh-hhcc---cccceE-----------------EEEEEeehhhcCh---
Confidence 554 45567777777752 2222 234444 4554432221111
Q ss_pred HHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHh---HhCC-------ccccCceeeeeeeehhHhhhc
Q 005155 219 KAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA---KEGL-------KIQADSVVVAQITYQSLFKLY 288 (711)
Q Consensus 219 ~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEa---KEgv-------~I~~es~t~a~Is~q~~F~~Y 288 (711)
++...++. +++ +-+.|-||. |-|+ .++|++
T Consensus 394 -~~~~~k~~----------------------~k~--~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~--------------- 433 (731)
T KOG0347|consen 394 -LSSSRKKK----------------------DKE--DELNAKIQHLMKKIGFRGKPKIIDLTPQS--------------- 433 (731)
T ss_pred -hHHhhhcc----------------------chh--hhhhHHHHHHHHHhCccCCCeeEecCcch---------------
Confidence 11111100 000 001111110 1111 112222
Q ss_pred CccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHH
Q 005155 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368 (711)
Q Consensus 289 ~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~ 368 (711)
+||++-.+-+ +..|+ .-+|+--..|.+. -.| ..||||+||..+..
T Consensus 434 -------~ta~~l~Es~--------I~C~~----~eKD~ylyYfl~r---------------yPG-rTlVF~NsId~vKR 478 (731)
T KOG0347|consen 434 -------ATASTLTESL--------IECPP----LEKDLYLYYFLTR---------------YPG-RTLVFCNSIDCVKR 478 (731)
T ss_pred -------hHHHHHHHHh--------hcCCc----cccceeEEEEEee---------------cCC-ceEEEechHHHHHH
Confidence 2222211100 11122 1222222223221 123 36999999999999
Q ss_pred HHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 369 Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+-+|...+|+.-.|||.+-|..|=..+-..+-.+..|.|||+.|.||.||.
T Consensus 479 Lt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp 530 (731)
T KOG0347|consen 479 LTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP 530 (731)
T ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC
Confidence 9999999999999999988777777778777888999999999999999994
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=229.86 Aligned_cols=276 Identities=22% Similarity=0.286 Sum_probs=200.6
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
+.|+|+|+.|.++.+.|+ |.-.-||+||||+|+||+...||. |.--.||||+++||+|-++-+..++
T Consensus 191 ~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 191 VHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 469999999999999999 888999999999999999999984 5668999999999999999999998
Q ss_pred hhcC------CeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhh
Q 005155 68 RFLG------LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 68 ~~LG------Ltv~~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
..|+ +.+++..++++..+.- -.-+.+|+++||++| -|.|-..+. .+. -++|+.+||||+| +
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL-~DmL~KK~~------sLd---~CRyL~lDEADRm-i 339 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRL-MDMLAKKIM------SLD---ACRYLTLDEADRM-I 339 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchH-HHHHHHhhc------cHH---HHHHhhhhhHHHH-h
Confidence 8775 5666777888754443 345779999999998 565543322 233 5779999999999 5
Q ss_pred hcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHH
Q 005155 140 DEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALK 219 (711)
Q Consensus 140 Dea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~ 219 (711)
|.++. ..+..+...|+ .+||.+ |||++.+ +.|.+-
T Consensus 340 DmGFE---------------ddir~iF~~FK---------~QRQTL-----------------LFSATMP--~KIQ~F-- 374 (610)
T KOG0341|consen 340 DMGFE---------------DDIRTIFSFFK---------GQRQTL-----------------LFSATMP--KKIQNF-- 374 (610)
T ss_pred hccch---------------hhHHHHHHHHh---------hhhhee-----------------eeecccc--HHHHHH--
Confidence 88753 35666666665 367777 8998863 444432
Q ss_pred HHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcc
Q 005155 220 AKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299 (711)
Q Consensus 220 A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~ 299 (711)
|+.-+-+ +|--+-||. |-|.
T Consensus 375 AkSALVK------------PvtvNVGRA------------------------------------------------GAAs 394 (610)
T KOG0341|consen 375 AKSALVK------------PVTVNVGRA------------------------------------------------GAAS 394 (610)
T ss_pred HHhhccc------------ceEEecccc------------------------------------------------cccc
Confidence 2222211 111122221 1111
Q ss_pred cHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 005155 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (711)
Q Consensus 300 te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~ 379 (711)
++|+ ..+-|...+.|.--+. +|. .+..-||||||+...+++.+.++|.-.|+.
T Consensus 395 -----------ldVi-------------QevEyVkqEaKiVylL-eCL--QKT~PpVLIFaEkK~DVD~IhEYLLlKGVE 447 (610)
T KOG0341|consen 395 -----------LDVI-------------QEVEYVKQEAKIVYLL-ECL--QKTSPPVLIFAEKKADVDDIHEYLLLKGVE 447 (610)
T ss_pred -----------hhHH-------------HHHHHHHhhhhhhhHH-HHh--ccCCCceEEEeccccChHHHHHHHHHccce
Confidence 0110 0000333344443333 222 256678999999999999999999999999
Q ss_pred eEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 380 HNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 380 ~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
...+|+++.|.+|++.|-+ ++| +..|.|||+.|..|.|+.
T Consensus 448 avaIHGGKDQedR~~ai~afr~g-kKDVLVATDVASKGLDFp 488 (610)
T KOG0341|consen 448 AVAIHGGKDQEDRHYAIEAFRAG-KKDVLVATDVASKGLDFP 488 (610)
T ss_pred eEEeecCcchhHHHHHHHHHhcC-CCceEEEecchhccCCCc
Confidence 9999999888889999988 788 668999999999999995
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=224.87 Aligned_cols=279 Identities=19% Similarity=0.247 Sum_probs=210.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------C--CCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------G--EGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------G--~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|||+|-.+.+.-+.|+ |.-.+||+|||.+|+.|+..+-.. | .-..|++|+++||.|.+.+...|.+..|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 58999999999999999 778899999999999999977552 3 3466899999999999999999999999
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
|.+.+++++++.. .+...-+|.|+++||++| .|.+... ...++ ...|+|+||+|+|+ |.++.|
T Consensus 325 l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRl-----id~VkmK--atn~~---rvS~LV~DEadrmf-dmGfe~---- 389 (731)
T KOG0339|consen 325 LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRL-----IDMVKMK--ATNLS---RVSYLVLDEADRMF-DMGFEP---- 389 (731)
T ss_pred ceEEEeecCCcHHHHHHhhhcCCeEEEechHHH-----HHHHHhh--cccce---eeeEEEEechhhhh-ccccHH----
Confidence 9999999998743 444557799999999998 4443332 23344 68999999999996 887655
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
++..|.....+ ++|.+ +|+++ +...|..+ |+.++. |.
T Consensus 390 -----------qVrSI~~hirp---------drQtl-----------------lFsaT--f~~kIe~l--ard~L~-dp- 426 (731)
T KOG0339|consen 390 -----------QVRSIKQHIRP---------DRQTL-----------------LFSAT--FKKKIEKL--ARDILS-DP- 426 (731)
T ss_pred -----------HHHHHHhhcCC---------cceEE-----------------Eeecc--chHHHHHH--HHHHhc-CC-
Confidence 78888888865 56766 78876 34455544 455542 11
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
|-+| +|.+- +|-+ -||
T Consensus 427 -------VrvV---qg~vg-------------ean~------------dIT----------------------------- 442 (731)
T KOG0339|consen 427 -------VRVV---QGEVG-------------EANE------------DIT----------------------------- 442 (731)
T ss_pred -------eeEE---Eeehh-------------cccc------------chh-----------------------------
Confidence 1111 11000 0000 000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
....|+.+...||..++..+-+....| .||||.+-...+|.++..|+-.|+.+.+||+++.|
T Consensus 443 -----------------Q~V~V~~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdq 504 (731)
T KOG0339|consen 443 -----------------QTVSVCPSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQ 504 (731)
T ss_pred -----------------heeeeccCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhh
Confidence 002345678899999998887776555 89999999999999999999999999999999878
Q ss_pred hHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|-..+-.---....|.|||+.|.||+||.
T Consensus 505 a~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 505 AERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 7777566553333579999999999999997
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=236.56 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=103.8
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|++.|..++..+.++ ++++..||+|||++|++|++.....|.+|.|++|++.||.|.++.+..++..+|++
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~ 340 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIR 340 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcE
Confidence 5889999999988765 49999999999999999998666789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|++++++++..+|+..+ .+||++||++.+ .+. ...+ ++.++||||+|.+
T Consensus 341 v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------v~~~---~l~lvVIDE~Hrf 395 (681)
T PRK10917 341 VALLTGSLKGKERREILEAIASGEADIVIGTHALI-----QDD-------VEFH---NLGLVIIDEQHRF 395 (681)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh-----ccc-------chhc---ccceEEEechhhh
Confidence 99999999977665433 489999998765 221 1234 7899999999985
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=225.60 Aligned_cols=265 Identities=20% Similarity=0.227 Sum_probs=177.9
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.|+|.-++.++++|+ ++.|.||.|||++|.+|+++ .+..+.||+|...|.++..+.+.. +|+.+..+.++
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~----~gi~~~~~~s~ 86 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRA----AGVAAAYLNST 86 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHH----cCCcEEEEeCC
Confidence 5689999999999988 99999999999999999973 456688999999999887776554 69999999888
Q ss_pred CCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 81 MIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 81 ~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
.+..++... -..+|+|+||..+.-+.++..+. .. .+.++||||||.+. +-+. .
T Consensus 87 ~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~-------~~---~l~~iViDEaH~i~-~~g~----------~ 145 (591)
T TIGR01389 87 LSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQ-------RI---PIALVAVDEAHCVS-QWGH----------D 145 (591)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHh-------cC---CCCEEEEeCCcccc-cccC----------c
Confidence 886655433 24699999999885444433221 22 78999999999984 2100 0
Q ss_pred CccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
-...|..+..+...++.
T Consensus 146 frp~y~~l~~l~~~~~~--------------------------------------------------------------- 162 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ--------------------------------------------------------------- 162 (591)
T ss_pred cHHHHHHHHHHHHhCCC---------------------------------------------------------------
Confidence 00011111111111110
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC-
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP- 312 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~- 312 (711)
..+.++|+|+... ...+.+..++.
T Consensus 163 ------------------------------------------------------~~vi~lTAT~~~~~~~~i~~~l~~~~ 188 (591)
T TIGR01389 163 ------------------------------------------------------VPRIALTATADAETRQDIRELLRLAD 188 (591)
T ss_pred ------------------------------------------------------CCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 0134566666543 23444444432
Q ss_pred -eEEe-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 313 -VIEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 313 -vv~I-Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
.+.+ +.++|... ..+ .....+...+.+.+... .++++||||.|...++.+++.|...|++...+|+++...
T Consensus 189 ~~~~~~~~~r~nl~----~~v-~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~ 261 (591)
T TIGR01389 189 ANEFITSFDRPNLR----FSV-VKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNK 261 (591)
T ss_pred CCeEecCCCCCCcE----EEE-EeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHH
Confidence 1222 22233211 111 12234566666666542 378999999999999999999999999999999987666
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+|+..+-. ..| .-.|.|||+.+|+|+|+.
T Consensus 262 ~R~~i~~~F~~g-~~~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 262 VRAENQEDFLYD-DVKVMVATNAFGMGIDKP 291 (591)
T ss_pred HHHHHHHHHHcC-CCcEEEEechhhccCcCC
Confidence 66654443 445 468999999999999974
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-22 Score=234.74 Aligned_cols=269 Identities=17% Similarity=0.130 Sum_probs=173.5
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.|+|..++.+++.|+ |+.|.||.||||+|.||+++ .+..+.||+|...|++.....+ . .+|+.+..+.++
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~---~~GiTLVISPLiSLmqDQV~~L---~-~~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMNL---L-QANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHH---H-hCCCeEEEEECC
Confidence 5789999999999998 99999999999999999974 4667999999999998543333 2 269999999999
Q ss_pred CCHHHHHhcc--------CCCeEEECCCchh-hHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC--Cceecc
Q 005155 81 MIPEERRSNY--------RCDITYTNNSELG-FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR--NPLLIS 149 (711)
Q Consensus 81 ~~~~~r~~aY--------~~DI~YgT~~elg-fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~--tPLiiS 149 (711)
++..++...+ ..+|+|+||..+. .|.+.+.+.. ...+ ..+.++||||||.|+ +-+. -|
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~----L~~~--~~LslIVIDEAHcVS-qWGhDFRp---- 602 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN----LNSR--GLLARFVIDEAHCVS-QWGHDFRP---- 602 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh----hhhc--cccceeccCcchhhh-hcccchHH----
Confidence 8866554322 3599999999874 2445544421 1111 157889999999985 2210 00
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
.|..+..+...++.
T Consensus 603 --------dYr~L~~Lr~~fp~---------------------------------------------------------- 616 (1195)
T PLN03137 603 --------DYQGLGILKQKFPN---------------------------------------------------------- 616 (1195)
T ss_pred --------HHHHHHHHHHhCCC----------------------------------------------------------
Confidence 11111111111100
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHH-HHHHHH
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLKM 308 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~-~Ef~~i 308 (711)
..+.++|+||.... +++.+.
T Consensus 617 -----------------------------------------------------------vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 617 -----------------------------------------------------------IPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred -----------------------------------------------------------CCeEEEEecCCHHHHHHHHHH
Confidence 01335666665432 334444
Q ss_pred cCCCe-EEe--CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeC
Q 005155 309 FQMPV-IEV--PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (711)
Q Consensus 309 Y~l~v-v~I--Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA 385 (711)
.++.- +++ ..++|..+ ..+..........|...+... ..+.+.||||.|..++|.++..|.+.|+++..+||
T Consensus 638 L~l~~~~vfr~Sf~RpNL~----y~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHA 712 (1195)
T PLN03137 638 LGLVNCVVFRQSFNRPNLW----YSVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHG 712 (1195)
T ss_pred cCCCCcEEeecccCccceE----EEEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeC
Confidence 44421 111 11222211 111111111223444444332 23568999999999999999999999999999999
Q ss_pred CCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 386 ~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++...+|+..+-. ..| ...|.|||+.+|||+|+.
T Consensus 713 GLs~eeR~~vqe~F~~G-ei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKD-EINIICATVAFGMGINKP 747 (1195)
T ss_pred CCCHHHHHHHHHHHhcC-CCcEEEEechhhcCCCcc
Confidence 9777666654444 334 568999999999999994
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=232.55 Aligned_cols=128 Identities=22% Similarity=0.203 Sum_probs=96.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHH----
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMER---- 65 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~---- 65 (711)
.|+|+|..+...+++|+ |+.+.||+|||++|.+|++ ..|. |..|.+|+|+..||.+.+..+..
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil-~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAII-DELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHH-HHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998 9999999999999999997 4442 23589999999999988765442
Q ss_pred ---Hhh----hc-CCeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechh
Q 005155 66 ---VHR----FL-GLSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVD 135 (711)
Q Consensus 66 ---~y~----~L-GLtv~~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvD 135 (711)
++. .+ +++|++..|+.+..+++.. -.+||+++||..|. ++|... .-...++ +++++||||+|
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~-~ll~~~----~~~~~l~---~l~~VVIDE~H 182 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLA-ILLNSP----KFREKLR---TVKWVIVDEIH 182 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHH-HHhcCh----hHHHHHh---cCCEEEEechh
Confidence 221 22 7788999999887766543 35799999999872 333211 1011345 89999999999
Q ss_pred hhh
Q 005155 136 SVL 138 (711)
Q Consensus 136 s~L 138 (711)
.++
T Consensus 183 ~l~ 185 (876)
T PRK13767 183 SLA 185 (876)
T ss_pred hhc
Confidence 986
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=206.50 Aligned_cols=275 Identities=15% Similarity=0.230 Sum_probs=202.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|-.+|--+++.+++|+ |||.+.|.|||.+|++-++ .++. .-+|.|++|+++||.|.-+-+..+...+|+.|-
T Consensus 49 kPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vl-q~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVL-QSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred CchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeee-eecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 57889999999999999 9999999999999988774 5542 347999999999999999999999999999998
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
...|+.+ .+.|+..|++++|-|||+++ ||.++... +| .|....+|+||+|.|| +++
T Consensus 128 acigg~n~gedikkld~G~hvVsGtPGrv-~dmikr~~--------L~-tr~vkmlVLDEaDemL-~kg----------- 185 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHVVSGTPGRV-LDMIKRRS--------LR-TRAVKMLVLDEADEML-NKG----------- 185 (400)
T ss_pred EEecCCccchhhhhhcccceEeeCCCchH-HHHHHhcc--------cc-ccceeEEEeccHHHHH-Hhh-----------
Confidence 8877654 67788899999999999998 78776432 22 3489999999999998 443
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+-.++..+.+.|++ .-|+. ++|++ +++.|.... ..++. |
T Consensus 186 ----fk~Qiydiyr~lp~---------~~Qvv-----------------~~SAT--lp~eilemt--~kfmt-d------ 224 (400)
T KOG0328|consen 186 ----FKEQIYDIYRYLPP---------GAQVV-----------------LVSAT--LPHEILEMT--EKFMT-D------ 224 (400)
T ss_pred ----HHHHHHHHHHhCCC---------CceEE-----------------EEecc--CcHHHHHHH--HHhcC-C------
Confidence 22356667777765 34554 56666 456666543 33332 2
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
-|.|.-+-.+-.. +|+.|+
T Consensus 225 --pvrilvkrdeltl------EgIKqf----------------------------------------------------- 243 (400)
T KOG0328|consen 225 --PVRILVKRDELTL------EGIKQF----------------------------------------------------- 243 (400)
T ss_pred --ceeEEEecCCCch------hhhhhh-----------------------------------------------------
Confidence 2222211111111 122221
Q ss_pred EEeCCCCCcccccCCCeEEeChhH-HHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 314 IEVPTNLPNIRVDLPIQSFATARG-KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~-K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
.|-...++ |+.++++.-... .-...+|||++..++++|++.|.+.+....-+|+++++.+|
T Consensus 244 ----------------~v~ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkER 305 (400)
T KOG0328|consen 244 ----------------FVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKER 305 (400)
T ss_pred ----------------eeeechhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHH
Confidence 11233334 666777655433 22356899999999999999999999999999999988888
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+.+-. ++| ..+|.|+|+.-.||+|+.
T Consensus 306 d~im~dFRsg-~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 306 DKIMNDFRSG-KSRVLITTDVWARGIDVQ 333 (400)
T ss_pred HHHHHHhhcC-CceEEEEechhhccCCcc
Confidence 866655 677 679999999999999994
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=234.94 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=100.9
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+++|..++..+.++ ++++..||+|||++|++|++-....|++|.|++|+..||.|.++.+..++..++++
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 4899999999988764 39999999999999999998666789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++++.+..+..+++... .+||++||+. .|.. ....+ ++.++||||+|.+
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-----ll~~-------~v~f~---~L~llVIDEahrf 585 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHK-----LLQK-------DVKFK---DLGLLIIDEEQRF 585 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHH-----HhhC-------CCCcc---cCCEEEeeccccc
Confidence 99998887765544322 4799999982 2221 12344 8999999999985
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=234.97 Aligned_cols=280 Identities=19% Similarity=0.270 Sum_probs=211.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--------~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+|.|+|-.++|+++.|+ |...+||+|||++|.||.+.+-+ .|.-..|++||++||.|..+|+.+|...+|
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999 99999999999999999996544 355689999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhh-hhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQ-LVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~-~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
+.+.+++++....+. ...-.|+|++||+|++ .|.| +.+... ..+| ...|+++||+|.|+ |.++.|
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRm-iD~l----~~n~grvtnlr---R~t~lv~deaDrmf-dmgfeP--- 534 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRM-IDIL----CANSGRVTNLR---RVTYLVLDEADRMF-DMGFEP--- 534 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchh-hhhH----hhcCCcccccc---ccceeeechhhhhh-eeccCc---
Confidence 999999998764332 2345699999999998 4444 333211 2233 67799999999999 999988
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
+...|++.+.+ .||.. +|+++ +++.+. ++ |...+++-+
T Consensus 535 ------------q~~~Ii~nlrp---------drQtv-----------------lfSat--fpr~m~-~l-a~~vl~~Pv 572 (997)
T KOG0334|consen 535 ------------QITRILQNLRP---------DRQTV-----------------LFSAT--FPRSME-AL-ARKVLKKPV 572 (997)
T ss_pred ------------ccchHHhhcch---------hhhhh-----------------hhhhh--hhHHHH-HH-HHHhhcCCe
Confidence 33335666643 34443 67766 445544 44 555554443
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~i 308 (711)
. +||+- .+++.. -|
T Consensus 573 e--------iiv~~-~svV~k----------------------------~V----------------------------- 586 (997)
T KOG0334|consen 573 E--------IIVGG-RSVVCK----------------------------EV----------------------------- 586 (997)
T ss_pred e--------EEEcc-ceeEec----------------------------cc-----------------------------
Confidence 2 23331 011110 01
Q ss_pred cCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
.....|-..+.+|+..+.+.+....+ .-+++||+.+.+++..+.+.|.+.|++|..||+...
T Consensus 587 -----------------~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~ 648 (997)
T KOG0334|consen 587 -----------------TQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVD 648 (997)
T ss_pred -----------------eEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCc
Confidence 01112234478999999888887765 569999999999999999999999999999999988
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+.|+..|.. +.| +-.++|||+.+.||+|++
T Consensus 649 q~dR~sti~dfK~~-~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 649 QHDRSSTIEDFKNG-VVNLLVATSVVARGLDVK 680 (997)
T ss_pred hHHHHhHHHHHhcc-CceEEEehhhhhcccccc
Confidence 9999988877 666 778999999999999996
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=224.94 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=102.6
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|++.|.-++..+.++ ++++..||+|||++|++|++.....|.+|.+++|+..||.|-++.+..++..+|++
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 5889999999988765 49999999999999999998655688999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+++++++++..+|+... .+||++||++.+ .+. .... ++.++||||+|.+
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll-----~~~-------~~~~---~l~lvVIDEaH~f 369 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALI-----QEK-------VEFK---RLALVIIDEQHRF 369 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH-----hcc-------cccc---ccceEEEechhhc
Confidence 99999999877665432 469999999755 222 1234 7899999999985
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=230.82 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=177.8
Q ss_pred CCchhHHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+++|..++..+++| .+++..||.|||++|+++++.....|++|.|++|+..||.|.++.+...+..++++
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 5899999999988776 49999999999999999998666689999999999999999999999999888999
Q ss_pred EEEEcCCCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 74 VGLIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 74 v~~i~~~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
+.++.+..+..+++.. -.+||++||+. .|+.. .... .+.++||||+|.+-.
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-----lL~~~-------v~~~---~L~lLVIDEahrfG~-------- 736 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK-----LLQSD-------VKWK---DLGLLIVDEEHRFGV-------- 736 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH-----HHhCC-------CCHh---hCCEEEEechhhcch--------
Confidence 9999888776665543 25799999984 23221 1233 789999999999610
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
.. ...++.+.. +.+++ +++++- ..+.+..++ ..
T Consensus 737 ------------~~-~e~lk~l~~---------~~qvL-----------------l~SATp-iprtl~l~~---~g---- 769 (1147)
T PRK10689 737 ------------RH-KERIKAMRA---------DVDIL-----------------TLTATP-IPRTLNMAM---SG---- 769 (1147)
T ss_pred ------------hH-HHHHHhcCC---------CCcEE-----------------EEcCCC-CHHHHHHHH---hh----
Confidence 01 111222221 22333 345442 112221111 11
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
T Consensus 770 -------------------------------------------------------------------------------- 769 (1147)
T PRK10689 770 -------------------------------------------------------------------------------- 769 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEE-eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEEe
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLN 384 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~-~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vLn 384 (711)
..++.++..|+.. |......+. ......+.++..++ ..|..|+|||++++.++.+++.|++. ++++.++|
T Consensus 770 l~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lH 842 (1147)
T PRK10689 770 MRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 (1147)
T ss_pred CCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 1111222222221 110001111 11112233444444 34667999999999999999999987 78899999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++.+.+++..+.+ ..| .-.|.|||++++||+||.
T Consensus 843 G~m~q~eRe~im~~Fr~G-k~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 843 GQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEECchhhcccccc
Confidence 99888888877776 445 679999999999999995
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=211.73 Aligned_cols=129 Identities=24% Similarity=0.261 Sum_probs=99.7
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|||+|..+... +++|+ |+.+.||+|||++|.+|++-....|..+.+|+|+..||.+-++.+..+. .+|++|+..+
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~-~~g~~v~~~t 101 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFE-ELGVRVGIST 101 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEe
Confidence 589999999987 66776 9999999999999999987444478899999999999999999988754 4699999999
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
|+.+...+. .-.+||+++|+..+ ...+|.. ....+ .+.++||||+|.++ |+.|
T Consensus 102 Gd~~~~~~~-l~~~~IiV~Tpek~-~~llr~~------~~~l~---~v~lvViDE~H~l~-d~~r 154 (737)
T PRK02362 102 GDYDSRDEW-LGDNDIIVATSEKV-DSLLRNG------APWLD---DITCVVVDEVHLID-SANR 154 (737)
T ss_pred CCcCccccc-cCCCCEEEECHHHH-HHHHhcC------hhhhh---hcCEEEEECccccC-CCcc
Confidence 987643322 23579999999885 2233321 11233 79999999999874 5443
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=201.78 Aligned_cols=131 Identities=24% Similarity=0.301 Sum_probs=103.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHHhhh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (711)
.|+.||-.++++|++|+ ++..+||+||||++++|++ +.|+ |--..|+.|+++||.|.++.+..+..-
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiV-q~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~ 237 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIV-QSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHH-HHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC
Confidence 48899999999999999 9999999999999999997 5664 446889999999999999999999876
Q ss_pred cCCeE-EEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 70 LGLSV-GLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 70 LGLtv-~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
+-.=| |++.||-. .+-.|..-++.|.+||||+| -|++.... ..... .+.|+|+||+|++| |-++
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRL-----vDHLknT~-~i~~s---~LRwlVlDEaDrll-eLGf 304 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRL-----VDHLKNTK-SIKFS---RLRWLVLDEADRLL-ELGF 304 (708)
T ss_pred ceEEeeceeecccccccHHHHHhcCceEEEcCchHH-----HHHHhccc-hheee---eeeEEEecchhHHH-hccc
Confidence 54433 44555532 34445667899999999998 45555443 23333 68999999999997 6653
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=211.88 Aligned_cols=279 Identities=15% Similarity=0.092 Sum_probs=174.4
Q ss_pred CCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH----cCCCEEE-EecCHHHHHHHHHHHHHHhhhc---
Q 005155 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHV-VTVNDYLAQRDAEWMERVHRFL--- 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhV-vT~NdyLA~RDae~~~~~y~~L--- 70 (711)
.|||+|...+..+++|+ +++++||+|||.+++++.+ ++ ...+..| ++|+++||.|.++.+..+.+.+
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll--~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~ 92 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLL--AVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDV 92 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhc--cccccccccceEEEeCchHHHHHHHHHHHHHHHHHhccc
Confidence 49999999999999997 5579999999986653332 33 1234566 5699999999999999999877
Q ss_pred --------------------CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcch----hh------h
Q 005155 71 --------------------GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANS----EQ------L 118 (711)
Q Consensus 71 --------------------GLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~----~~------~ 118 (711)
+++|.++.|+.+ ++.+.....++|++|| .|.+..+...+. .. -
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT-----~D~i~sr~L~~gYg~~~~~~pi~ag 167 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT-----VDMIGSRLLFSGYGCGFKSRPLHAG 167 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC-----HHHHcCCccccccccccccccchhh
Confidence 589999999965 4455555678999999 466654432100 00 0
Q ss_pred hcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhc
Q 005155 119 VMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMAL 198 (711)
Q Consensus 119 v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~ 198 (711)
.+. ...++|+|||| | |.++ ...+.+|.+.+..... ...+++.
T Consensus 168 ~L~---~v~~LVLDEAD--L-d~gF---------------~~~l~~Il~~l~rp~~----~rprQtL------------- 209 (844)
T TIGR02621 168 FLG---QDALIVHDEAH--L-EPAF---------------QELLKQIMNEQQRPPD----FLPLRVV------------- 209 (844)
T ss_pred hhc---cceEEEEehhh--h-cccc---------------HHHHHHHHHhcccCcc----cccceEE-------------
Confidence 133 67899999999 3 5543 3467777775421100 0124555
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeee
Q 005155 199 ETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQ 278 (711)
Q Consensus 199 ~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~ 278 (711)
+||++.+ ..+... +..++..+ +.+. | ..+..+...
T Consensus 210 ----LFSAT~p--~ei~~l--~~~~~~~p--~~i~------V-----------------------------~~~~l~a~k 244 (844)
T TIGR02621 210 ----ELTATSR--TDGPDR--TTLLSAED--YKHP------V-----------------------------LKKRLAAKK 244 (844)
T ss_pred ----EEecCCC--ccHHHH--HHHHccCC--ceee------c-----------------------------ccccccccc
Confidence 6777752 112221 22332222 1110 0 000011111
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHH-hhhcCCcEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVES-MFRLGRPVL 357 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~-~~~~grPVL 357 (711)
+.. .+..+...|....+..+.. ....+..+|
T Consensus 245 i~q------------------------------------------------~v~v~~e~Kl~~lv~~L~~ll~e~g~~vL 276 (844)
T TIGR02621 245 IVK------------------------------------------------LVPPSDEKFLSTMVKELNLLMKDSGGAIL 276 (844)
T ss_pred eEE------------------------------------------------EEecChHHHHHHHHHHHHHHHhhCCCcEE
Confidence 100 0111223344333333322 235678999
Q ss_pred EEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH----HHHH--hc----CC-----C-ccEEEEcCCCcCCccee
Q 005155 358 VGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA----ETVA--QA----GR-----K-YAITISTNMAGRGTDII 420 (711)
Q Consensus 358 V~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea----~Iia--~A----G~-----~-G~VTIATnmAGRGTDIk 420 (711)
|||+|++.++.+++.|++.++ ..||+++.+.+|+. .+.. +. |. . ..|.|||+.++||+||.
T Consensus 277 VF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId 353 (844)
T TIGR02621 277 VFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNIS 353 (844)
T ss_pred EEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCC
Confidence 999999999999999999988 88999987777773 2222 11 32 1 36999999999999996
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=210.43 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.+||+|..+...+.+|+ |+.+.||+|||+++.+|++-....|.++.+++|...||.+-++.+..+. .+|++|+...+
T Consensus 22 ~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G 100 (674)
T PRK01172 22 ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIG 100 (674)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeC
Confidence 47899999999999887 9999999999999999987444568889999999999999999998854 58999999888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
+.+...+. .-.+||+++|+..+ |.+..+ . ..... ++.++||||+|.+. |+.+
T Consensus 101 ~~~~~~~~-~~~~dIiv~Tpek~--~~l~~~---~--~~~l~---~v~lvViDEaH~l~-d~~r 152 (674)
T PRK01172 101 DYDDPPDF-IKRYDVVILTSEKA--DSLIHH---D--PYIIN---DVGLIVADEIHIIG-DEDR 152 (674)
T ss_pred CCCCChhh-hccCCEEEECHHHH--HHHHhC---C--hhHHh---hcCEEEEecchhcc-CCCc
Confidence 76543222 23579999999875 333211 1 12244 79999999999874 5443
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=204.72 Aligned_cols=293 Identities=15% Similarity=0.091 Sum_probs=168.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|+|.|..++..+++++ |+.+.||.|||+++.+.+....-.++ .|.|++|+..|+.|-.+.+..+...-...++.+.
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~ 193 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIY 193 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEe
Confidence 68999999988777655 99999999999986654321111334 8999999999999988888776654445555555
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccc
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVAR 158 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~ 158 (711)
++... ...++|+++|+..+. ++.+ .... .+.++||||||.+.-+
T Consensus 194 ~g~~~-----~~~~~I~VaT~qsl~-~~~~---------~~~~---~~~~iIvDEaH~~~~~------------------ 237 (501)
T PHA02558 194 SGTAK-----DTDAPIVVSTWQSAV-KQPK---------EWFD---QFGMVIVDECHLFTGK------------------ 237 (501)
T ss_pred cCccc-----CCCCCEEEeeHHHHh-hchh---------hhcc---ccCEEEEEchhcccch------------------
Confidence 55432 135799999997762 1111 1234 7999999999998521
Q ss_pred hHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEE
Q 005155 159 YPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (711)
Q Consensus 159 y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~Iv 238 (711)
....++..+... .| .+-||.- +.+.. .+... + ..+|. +.-|.+
T Consensus 238 --~~~~il~~~~~~-~~-------~lGLTAT-------------p~~~~---~~~~~--~--~~~fG-~i~~~v------ 280 (501)
T PHA02558 238 --SLTSIITKLDNC-KF-------KFGLTGS-------------LRDGK---ANILQ--Y--VGLFG-DIFKPV------ 280 (501)
T ss_pred --hHHHHHHhhhcc-ce-------EEEEecc-------------CCCcc---ccHHH--H--HHhhC-CceEEe------
Confidence 223344444210 11 1223320 11100 00000 0 11221 111111
Q ss_pred EEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCC
Q 005155 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (711)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (711)
.+ .+.+ ++|....++- ..-.+.+.... ...+.
T Consensus 281 -------------~~----~~li--~~g~l~~~~~-~~v~~~~~~~~-----~~~~~----------------------- 312 (501)
T PHA02558 281 -------------TT----SQLM--EEGQVTDLKI-NSIFLRYPDED-----RVKLK----------------------- 312 (501)
T ss_pred -------------cH----HHHH--hCCCcCCceE-EEEeccCCHHH-----hhhhc-----------------------
Confidence 00 1111 2232211110 00000000000 00000
Q ss_pred CCCcccccCCCe--EEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHH
Q 005155 319 NLPNIRVDLPIQ--SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAET 396 (711)
Q Consensus 319 ~~p~~R~d~~d~--i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~I 396 (711)
..+.... ...+...+...|++.+....+.|+++||+|.+++.++.|++.|.+.|+++.+++++++..+|++-+
T Consensus 313 -----~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 313 -----GEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred -----ccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 0000000 012234455567777766667899999999999999999999999999999999987777777433
Q ss_pred HHhcCCCccEEEEc-CCCcCCccee
Q 005155 397 VAQAGRKYAITIST-NMAGRGTDII 420 (711)
Q Consensus 397 ia~AG~~G~VTIAT-nmAGRGTDIk 420 (711)
-........|.||| +++|||.||.
T Consensus 388 ~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 388 KIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHhCCCCeEEEEEcceeccccccc
Confidence 33223355799999 9999999994
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=224.94 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=102.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcC--CeEEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG--LSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LG--Ltv~~i 77 (711)
.|+++|..+++.+++|+ ++.|.||+|||+.+.+++...+..|..+.||+|+..||.|.++.+..+...+| +.+..+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 58999999999999999 99999999999977777766677899999999999999999999999998875 566778
Q ss_pred cCCCCHHHHHhc-----c-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSN-----Y-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~a-----Y-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.++++..++... - .+||+|+|++.+ .+++.+ .... .+.++||||||+||
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL-~~~~~~--------l~~~---~i~~iVVDEAD~ml 213 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFL-ARNFPE--------MKHL---KFDFIFVDDVDAFL 213 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchh-HHhHHH--------HhhC---CCCEEEEECceecc
Confidence 888887665432 1 379999999865 333321 1113 79999999999997
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-19 Score=208.19 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|||+|..+... +++|+ |+.+.||+|||++|.+|+.-..+ .|..+.+++|+..||.+-++.+..+ ..+|++|+..
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~~~g~~v~~~ 101 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-EKLGLRVAMT 101 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-hhcCCEEEEE
Confidence 589999999975 67777 99999999999999999974444 4778999999999999999988874 5689999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.++.+...+. .-.+||+++|+..+ ..+++.+ ....+ .+.++||||+|.+.
T Consensus 102 ~Gd~~~~~~~-~~~~~IiV~Tpe~~-~~ll~~~------~~~l~---~l~lvViDE~H~l~ 151 (720)
T PRK00254 102 TGDYDSTDEW-LGKYDIIIATAEKF-DSLLRHG------SSWIK---DVKLVVADEIHLIG 151 (720)
T ss_pred eCCCCCchhh-hccCCEEEEcHHHH-HHHHhCC------chhhh---cCCEEEEcCcCccC
Confidence 9987654332 23579999999876 2233321 12234 79999999999874
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=190.06 Aligned_cols=274 Identities=17% Similarity=0.252 Sum_probs=200.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC----CEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+|-|+|.-++++.+.|+ +|..+.|.|||-++.+|.+ ..+.-+ +..|+.|+++||-+-+.-+..+-+.+|+.|.
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~L-ekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vm 185 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVL-EKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVM 185 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhh-hhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEE
Confidence 79999999999999999 9999999999999999996 666433 6889999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.+|+.+ .+.-|..-..++++|||++. .|...... -.+. .+..+|+||||.+|.-+
T Consensus 186 vttGGT~lrDDI~Rl~~~VH~~vgTPGRI-lDL~~KgV------a~ls---~c~~lV~DEADKlLs~~------------ 243 (459)
T KOG0326|consen 186 VTTGGTSLRDDIMRLNQTVHLVVGTPGRI-LDLAKKGV------ADLS---DCVILVMDEADKLLSVD------------ 243 (459)
T ss_pred EecCCcccccceeeecCceEEEEcCChhH-HHHHhccc------ccch---hceEEEechhhhhhchh------------
Confidence 9999866 33344445569999999997 44433222 2344 78899999999998333
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+-+.+.+++..|++ +++++ |||++.|+ .|.+- .-+++ + .-|.|
T Consensus 244 ----F~~~~e~li~~lP~---------~rQil-----------------lySATFP~--tVk~F-m~~~l-~--kPy~I- 286 (459)
T KOG0326|consen 244 ----FQPIVEKLISFLPK---------ERQIL-----------------LYSATFPL--TVKGF-MDRHL-K--KPYEI- 286 (459)
T ss_pred ----hhhHHHHHHHhCCc---------cceee-----------------EEecccch--hHHHH-HHHhc-c--Cccee-
Confidence 34578888888864 78888 89988642 22221 12222 1 23443
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
-++|| .|+.-||.
T Consensus 287 ----NLM~e-------------------------------Ltl~GvtQ-------------------------------- 299 (459)
T KOG0326|consen 287 ----NLMEE-------------------------------LTLKGVTQ-------------------------------- 299 (459)
T ss_pred ----ehhhh-------------------------------hhhcchhh--------------------------------
Confidence 12222 11111210
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhH
Q 005155 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~E 393 (711)
-.-|+++.+|..-+-....+. .-+ ..+|||+|++.+|.|++...+.|.+|-.+||+|.|..|.
T Consensus 300 ---------------yYafV~e~qKvhCLntLfskL-qIN-QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRN 362 (459)
T KOG0326|consen 300 ---------------YYAFVEERQKVHCLNTLFSKL-QIN-QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRN 362 (459)
T ss_pred ---------------heeeechhhhhhhHHHHHHHh-ccc-ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhh
Confidence 123788888888765444433 333 457999999999999999999999999999987665555
Q ss_pred HHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 394 AETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 394 a~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.-.-. +-| .-+..|||++.-||+||.
T Consensus 363 rVFHdFr~G-~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 363 RVFHDFRNG-KCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhhhhhcc-ccceeeehhhhhcccccc
Confidence 44333 445 457889999999999995
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-18 Score=209.05 Aligned_cols=125 Identities=24% Similarity=0.277 Sum_probs=97.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+++|..+++.+++|+ ++.+.||+|||+.+.+++...+..|..+.|++|++.||.|.++.+..+...+|+.+.++.+
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g 159 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYY 159 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEc
Confidence 69999999999999998 8999999999974443333344568899999999999999999999999999999887776
Q ss_pred CCC--HHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMI--PEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~--~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+ ..++... -.+||+++|++.+ .+++. ..... .++++||||||+||
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL-----~~~~~----~l~~~---~~~~lVvDEaD~~L 214 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQFL-----SKNFD----ELPKK---KFDFVFVDDVDAVL 214 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHHH-----HHHHH----hcccc---ccCEEEEEChHHhh
Confidence 532 2232221 2479999999876 33332 11122 69999999999997
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=200.99 Aligned_cols=283 Identities=19% Similarity=0.199 Sum_probs=196.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~-~LGLtv 74 (711)
+|.+||+.++++.+-|. |+|.+.|.||||+|...++ ..|.- -+..||||++++|.|..+.+..+.. |-|+.|
T Consensus 47 ~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av-~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAV-ESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred CCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeee-hhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 69999999999999877 9999999999999998886 66643 3678999999999999999999985 679999
Q ss_pred EEEcCCCC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 75 GLIQRGMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 75 ~~i~~~~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
.+..||.+ ...+...-+|.|++||||++. .|-.+= .+... ++++.|+||||..+ |+.
T Consensus 126 svfIGGT~~~~d~~rlk~~rIvIGtPGRi~--qL~el~-----~~n~s---~vrlfVLDEADkL~-~t~----------- 183 (980)
T KOG4284|consen 126 SVFIGGTAHKLDLIRLKQTRIVIGTPGRIA--QLVELG-----AMNMS---HVRLFVLDEADKLM-DTE----------- 183 (980)
T ss_pred EEEecCchhhhhhhhhhhceEEecCchHHH--HHHHhc-----CCCcc---ceeEEEeccHHhhh-chh-----------
Confidence 99999987 556777788999999999973 222111 12233 88999999999986 531
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
.+-..++.|+..|+. .||+. -|+++ +++.+.++| + .+| +|.-.|=-
T Consensus 184 ---sfq~~In~ii~slP~---------~rQv~-----------------a~SAT--Yp~nLdn~L-s-k~m-rdp~lVr~ 229 (980)
T KOG4284|consen 184 ---SFQDDINIIINSLPQ---------IRQVA-----------------AFSAT--YPRNLDNLL-S-KFM-RDPALVRF 229 (980)
T ss_pred ---hHHHHHHHHHHhcch---------hheee-----------------EEecc--CchhHHHHH-H-HHh-cccceeec
Confidence 245678889999964 67776 56766 357788887 3 333 34322211
Q ss_pred C-CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 234 N-GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 234 d-~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
+ +.++++ |+.|++-
T Consensus 230 n~~d~~L~---------------GikQyv~-------------------------------------------------- 244 (980)
T KOG4284|consen 230 NADDVQLF---------------GIKQYVV-------------------------------------------------- 244 (980)
T ss_pred ccCCceee---------------chhheee--------------------------------------------------
Confidence 1 001110 3333322
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
.+|+.-- ....|.-+-+++..|...|-- -..||||.++-.++.++..|+..|+++..+.+.|.|.+|
T Consensus 245 --~~~s~nn------sveemrlklq~L~~vf~~ipy-----~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 245 --AKCSPNN------SVEEMRLKLQKLTHVFKSIPY-----VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDR 311 (980)
T ss_pred --eccCCcc------hHHHHHHHHHHHHHHHhhCch-----HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHH
Confidence 2222000 000111122233333333311 125999999999999999999999999999998877666
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
--.+-. ++. .-+|+|||++..||+|-.
T Consensus 312 l~a~~~lr~f-~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 312 LLAVDQLRAF-RVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHhhhc-eEEEEEecchhhccCCcc
Confidence 544433 333 558999999999999973
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-18 Score=181.71 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=57.4
Q ss_pred HHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEEeCCCcchHhHH---HHHH--hcCCCccEEEEcCCCcCCcce
Q 005155 347 ESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREA---ETVA--QAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 347 ~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~--~~vLnA~~~~~~~Ea---~Iia--~AG~~G~VTIATnmAGRGTDI 419 (711)
......++++||||++++.++.+++.|++.+.+ +..+|++..+.+|+. +++. +.| ...|.|||+.++||+||
T Consensus 216 ~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT~~~~~GiDi 294 (358)
T TIGR01587 216 LEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVATQVIEASLDI 294 (358)
T ss_pred HHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEECcchhceecc
Confidence 344467899999999999999999999998774 788999866666653 2343 333 44699999999999999
Q ss_pred e
Q 005155 420 I 420 (711)
Q Consensus 420 k 420 (711)
.
T Consensus 295 ~ 295 (358)
T TIGR01587 295 S 295 (358)
T ss_pred C
Confidence 5
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=202.24 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=98.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHH-HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE---
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYL-NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG--- 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l-~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~--- 75 (711)
.|+++|..+++.++.|+ ++.+.||+|||+ |++|+.. .+..|..|.|++|+++||.|.++.+..+...+|+.+.
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 69999999999999999 999999999997 5555543 3446889999999999999999999999999998754
Q ss_pred EEcCCCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.++++..++... -.+||++||++.+ .+++.. ... .++++||||||+||
T Consensus 157 ~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL-----~~~~~~-----l~~---~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 157 AYHSRLPTKEKKEFMERIENGDFDILITTTMFL-----SKNYDE-----LGP---KFDFIFVDDVDALL 212 (1171)
T ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----HHHHHH-----hcC---CCCEEEEeChHhhh
Confidence 46788887665322 2379999999865 343321 111 68999999999997
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-17 Score=192.94 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=95.4
Q ss_pred CchhHHHHHH-HHhCCCeEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 3 HFDVQIIGGA-VLHDGSIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 3 p~dvQl~g~~-~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
|.+-|..... ++.++-|+.+.||.|||+++.+++. +.+. +..|.|++|+..|+.+.++.+..++...+..+..+.+
T Consensus 16 ~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~-~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g 94 (773)
T PRK13766 16 ARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIA-ERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTG 94 (773)
T ss_pred ccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHH-HHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 4555655544 4444559999999999999988886 4444 6789999999999999888888776555558888889
Q ss_pred CCCHHHHHhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.++.+|...| .++|+++|+.-+..|.+...+ ... .+.++||||||.+.
T Consensus 95 ~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~-------~~~---~~~liVvDEaH~~~ 144 (773)
T PRK13766 95 EVSPEKRAELWEKAKVIVATPQVIENDLIAGRI-------SLE---DVSLLIFDEAHRAV 144 (773)
T ss_pred CCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCC-------Chh---hCcEEEEECCcccc
Confidence 88888887777 579999999877555543322 223 78999999999763
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=193.60 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH-HhhhcCCeEEEEcCCCCHHH
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMER-VHRFLGLSVGLIQRGMIPEE 85 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~-~y~~LGLtv~~i~~~~~~~~ 85 (711)
|++-.+.=++--|++..||+|||..+.+|++-....+.+|.|+.|++.+|.+-++.+.. +...+|.+||......+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 44444433344499999999999999999874434566899999999999999999864 44577888887665422
Q ss_pred HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 86 r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
+..-..+|+|+|++.| .+. +... ..+. ++.++||||||...+|
T Consensus 86 -~~s~~t~I~v~T~G~L-lr~----l~~d---~~L~---~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 86 -KVSRRTRLEVVTEGIL-TRM----IQDD---PELD---GVGALIFDEFHERSLD 128 (819)
T ss_pred -ccCCCCcEEEECCcHH-HHH----HhhC---cccc---cCCEEEEeccchhhhc
Confidence 1223468999999987 233 3222 2355 8999999999964334
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-17 Score=188.83 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=86.2
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHH---------HHHHHH--HHHH----cCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV---------STLAAY--LNAL----TGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv---------a~Lpa~--l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
++|.-....+.+|+ |++.+||+|||.+ |++|.+ ++++ .+..|.|++|+.+||.+-++.++...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 57888888888888 9999999999976 333332 1222 24589999999999999888888765
Q ss_pred hh---cCCeEEEEcCCCCHHHHH-hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 68 RF---LGLSVGLIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 68 ~~---LGLtv~~i~~~~~~~~r~-~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
.+ -|+++.+..++++.+... ..-..+|+++|+.-. + ..+. ++.++||||||.++.+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l--------~~L~---~v~~VVIDEaHEr~~~ 306 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------L--------NKLF---DYGTVIIDEVHEHDQI 306 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------c--------cccc---cCCEEEccccccCccc
Confidence 44 478888889998743221 222579999996421 0 1234 7999999999998644
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=194.43 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEEcCCCCHHH
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLIQRGMIPEE 85 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y-~~LGLtv~~i~~~~~~~~ 85 (711)
|++..+.=++--|++..||+|||.++.+|++-....+.+|.|+.|++.+|.+-++.|...+ ..+|.+||...++.+.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~-- 89 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK-- 89 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc--
Confidence 4444443333349999999999999998886433344579999999999999999986544 5678899987665321
Q ss_pred HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 86 r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..-..+|+|+|++.| .++|. .. ..+. ++.++||||+|..
T Consensus 90 --~~~~t~I~v~T~G~L-lr~l~----~d---~~L~---~v~~IIlDEaHER 128 (812)
T PRK11664 90 --VGPNTRLEVVTEGIL-TRMIQ----RD---PELS---GVGLVILDEFHER 128 (812)
T ss_pred --cCCCCcEEEEChhHH-HHHHh----hC---CCcC---cCcEEEEcCCCcc
Confidence 122457999999987 33332 21 2345 8999999999974
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-17 Score=200.22 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=84.0
Q ss_pred EecCCCcHHHHHHHHHHHHHHc-------------CCCEEEEecCHHHHHHHHHHHHHHhh------------hcCCeEE
Q 005155 21 EMKTGEGKTLVSTLAAYLNALT-------------GEGVHVVTVNDYLAQRDAEWMERVHR------------FLGLSVG 75 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL~-------------G~~VhVvT~NdyLA~RDae~~~~~y~------------~LGLtv~ 75 (711)
...||+|||++|.||++..-+. |..|.+|+|...||.+..+.+...+. .++++|+
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 3579999999999999744332 35699999999999999988765322 3689999
Q ss_pred EEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
..+|+.+..+|+.. -.+||+++||..| +++|... ....++ +++++||||+|.|+
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL-~~LLtsk-----~r~~L~---~Vr~VIVDE~H~L~ 137 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESL-YLMLTSR-----ARETLR---GVETVIIDEVHAVA 137 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHH-HHHHhhh-----hhhhhc---cCCEEEEecHHHhc
Confidence 99999998776543 4679999999988 3444321 112455 89999999999997
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=184.93 Aligned_cols=280 Identities=21% Similarity=0.216 Sum_probs=192.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHh--h
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVH--R 68 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---------G~~VhVvT~NdyLA~RDae~~~~~y--~ 68 (711)
-|.|+|..+++++++++ +|+..||+||||+|.+|++. -|. |-.+.|+.|+++||.|++.+|.++- .
T Consensus 158 ~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~-~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~ 236 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQ-HLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDE 236 (593)
T ss_pred CCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHH-HHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCC
Confidence 38999999999999998 99999999999999999874 443 3468999999999999999999987 4
Q ss_pred hcCCeEEEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCc
Q 005155 69 FLGLSVGLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (711)
Q Consensus 69 ~LGLtv~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tP 145 (711)
--++.+........+.++... -.+||..+||.++ ...+...+-..-++ +++++++||+|..+-.
T Consensus 237 ~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri-----~~~~~~~~~~idl~---~V~~lV~dEaD~lfe~----- 303 (593)
T KOG0344|consen 237 GTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI-----VGLLGLGKLNIDLS---KVEWLVVDEADLLFEP----- 303 (593)
T ss_pred CCchhhhhcccccchhhccchhHHHHHHHHhcCHHHH-----HHHhcCCCccchhh---eeeeEeechHHhhhCh-----
Confidence 445554433333223222211 2368999999885 44455443334566 8999999999998622
Q ss_pred eeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhc
Q 005155 146 LLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYR 225 (711)
Q Consensus 146 LiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~ 225 (711)
..++.+.+.+.+.+.. ..+. -.+|+++. ..+|..-. ...+.
T Consensus 304 ----------~~f~~Qla~I~sac~s----------~~i~---------------~a~FSat~--~~~VEE~~--~~i~~ 344 (593)
T KOG0344|consen 304 ----------EFFVEQLADIYSACQS----------PDIR---------------VALFSATI--SVYVEEWA--ELIKS 344 (593)
T ss_pred ----------hhHHHHHHHHHHHhcC----------cchh---------------hhhhhccc--cHHHHHHH--HHhhc
Confidence 2366777777776642 1111 12677654 23333221 11110
Q ss_pred cCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHH
Q 005155 226 RDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (711)
Q Consensus 226 ~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef 305 (711)
+. ..+|| |.+-+|
T Consensus 345 -~~-------~~viv----------------------------------------------------g~~~sa------- 357 (593)
T KOG0344|consen 345 -DL-------KRVIV----------------------------------------------------GLRNSA------- 357 (593)
T ss_pred -cc-------eeEEE----------------------------------------------------ecchhH-------
Confidence 10 01111 111111
Q ss_pred HHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHH-HHCCCCeEEEe
Q 005155 306 LKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLN 384 (711)
Q Consensus 306 ~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L-~~~gi~~~vLn 384 (711)
.-+.+...+.-.++..|.-|+.+.|..- -.=|+|||..|++.+..|...| .-.+|...++|
T Consensus 358 ----------------~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh 419 (593)
T KOG0344|consen 358 ----------------NETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIH 419 (593)
T ss_pred ----------------hhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEe
Confidence 1133333444456788999988888654 4468999999999999999999 78899999999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+...+.++|..+-+ ++| .-.|.|+||+.+||+||+
T Consensus 420 ~e~~~~qrde~~~~FR~g-~IwvLicTdll~RGiDf~ 455 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIG-KIWVLICTDLLARGIDFK 455 (593)
T ss_pred cccchhHHHHHHHHHhcc-CeeEEEehhhhhcccccc
Confidence 98667777777766 555 679999999999999997
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-16 Score=168.22 Aligned_cols=269 Identities=21% Similarity=0.199 Sum_probs=178.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
+|+-||--+++..++|+ +|.+.||+|||+++++|++-.-| .|....|+.|+++||+|.+..+.++-.++
T Consensus 41 kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999 99999999999999999973222 24467899999999999999999999998
Q ss_pred C--CeEEEEcCCCCHHHHHh--ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCce
Q 005155 71 G--LSVGLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (711)
Q Consensus 71 G--Ltv~~i~~~~~~~~r~~--aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPL 146 (711)
+ +.+.-+.++|+...-+. .-..||+++||+.+ -++++...- .... .+.|++|||||=+|.=.
T Consensus 121 ~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~l-----l~~~~~~~~-~~~~---~l~~LVvDEADLllsfG----- 186 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKL-----LRHLAAGVL-EYLD---SLSFLVVDEADLLLSFG----- 186 (569)
T ss_pred HHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHH-----HHHHhhccc-hhhh---heeeEEechhhhhhhcc-----
Confidence 7 55566666777554443 34579999999987 333433321 2344 78999999999988321
Q ss_pred eccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Q 005155 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (711)
Q Consensus 147 iiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~ 226 (711)
.-..+..+...|++ .-|.+ |.|++ +..-|. +| +.++-.
T Consensus 187 -----------Yeedlk~l~~~LPr---------~~Q~~-----------------LmSAT--l~dDv~-~L--KkL~l~ 224 (569)
T KOG0346|consen 187 -----------YEEDLKKLRSHLPR---------IYQCF-----------------LMSAT--LSDDVQ-AL--KKLFLH 224 (569)
T ss_pred -----------cHHHHHHHHHhCCc---------hhhhe-----------------eehhh--hhhHHH-HH--HHHhcc
Confidence 11234555555543 11112 22322 222222 22 233322
Q ss_pred CcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 227 d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
|.
T Consensus 225 nP------------------------------------------------------------------------------ 226 (569)
T KOG0346|consen 225 NP------------------------------------------------------------------------------ 226 (569)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHcCCCeEEe--CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 307 KMFQMPVIEV--PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 307 ~iY~l~vv~I--Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
|+.- ...-|..-+-...+|-.++.+|+.-+....+-..=.| .+|||.++|+.+=.|--.|.+-||+.-+||
T Consensus 227 ------viLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksciLN 299 (569)
T KOG0346|consen 227 ------VILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCILN 299 (569)
T ss_pred ------eEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhhhc
Confidence 1100 0111111112234566778889875555544332233 679999999999999999999999999999
Q ss_pred CCCcchHhHHHHHH--hcCCCccEEEEcCCC
Q 005155 385 ARPKYAAREAETVA--QAGRKYAITISTNMA 413 (711)
Q Consensus 385 A~~~~~~~Ea~Iia--~AG~~G~VTIATnmA 413 (711)
+......| -+||. .+| ...+.|||+--
T Consensus 300 seLP~NSR-~Hii~QFNkG-~YdivIAtD~s 328 (569)
T KOG0346|consen 300 SELPANSR-CHIIEQFNKG-LYDIVIATDDS 328 (569)
T ss_pred ccccccch-hhHHHHhhCc-ceeEEEEccCc
Confidence 97434343 36776 466 67999999865
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-17 Score=176.38 Aligned_cols=129 Identities=26% Similarity=0.307 Sum_probs=102.1
Q ss_pred CCchhHHHHHHHHh---------C-CC-eEEecCCCcHHHHHHHHHHHHHHcCC-----CEEEEecCHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLH---------D-GS-IAEMKTGEGKTLVSTLAAYLNALTGE-----GVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 2 rp~dvQl~g~~~L~---------~-G~-IaEm~TGEGKTLva~Lpa~l~AL~G~-----~VhVvT~NdyLA~RDae~~~~ 65 (711)
|-||||-+-.+.++ . |. .+-..||+||||+|++|+. ++|..+ ++.||.|+..||-|.+..+..
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV-Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV-QLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH-HHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 56999977777663 1 22 6788999999999999996 888777 577999999999999999999
Q ss_pred HhhhcCCeEEEEcCCCC--HHHHHhcc-----CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 66 VHRFLGLSVGLIQRGMI--PEERRSNY-----RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 66 ~y~~LGLtv~~i~~~~~--~~~r~~aY-----~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+...-||.|+...+..+ .+.++.+- ..||+++|||+| .|.| ... ....+. ++.|+||||||+||
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL-VDHl----~~~-k~f~Lk---~LrfLVIDEADRll 308 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL-VDHL----NNT-KSFDLK---HLRFLVIDEADRLL 308 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH-HHhc----cCC-CCcchh---hceEEEechHHHHH
Confidence 99999999988776543 55666542 249999999998 4444 432 234555 89999999999997
Q ss_pred hhc
Q 005155 139 IDE 141 (711)
Q Consensus 139 iDe 141 (711)
|.
T Consensus 309 -~q 310 (620)
T KOG0350|consen 309 -DQ 310 (620)
T ss_pred -HH
Confidence 65
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=175.41 Aligned_cols=279 Identities=18% Similarity=0.185 Sum_probs=203.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|+|--.++.+++|+ ++-..||+|||.+|+||++ .+|.+ -...|+.||++||.+-..-...+.++.++.+
T Consensus 43 ~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~-e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~ 121 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMI-EKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQ 121 (529)
T ss_pred CCCchhcccccceeeccccceeeecCCcchhhHHHHHH-HHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhh
Confidence 49999999999999999 8888999999999999998 56643 3799999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY--~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
++++++-+.+++-..- +.||+.+||+++- ++.-. -.+.++ ...|++.||+|+++ .++
T Consensus 122 s~~~ggD~~eeqf~~l~~npDii~ATpgr~~------h~~ve-m~l~l~---sveyVVfdEadrlf-emg---------- 180 (529)
T KOG0337|consen 122 SLLVGGDSIEEQFILLNENPDIIIATPGRLL------HLGVE-MTLTLS---SVEYVVFDEADRLF-EMG---------- 180 (529)
T ss_pred hhhcccchHHHHHHHhccCCCEEEecCceee------eeehh-eecccc---ceeeeeehhhhHHH-hhh----------
Confidence 9999987776665544 5899999999972 11111 013455 89999999999997 333
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCc--hHHHHHHHHHHHHHhccCcce
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDP--WARFVMNALKAKEFYRRDVQY 230 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~--~~~~i~~AL~A~~l~~~d~dY 230 (711)
+-++..+++..++. +++.. +||++-+ +....+ .-+...+
T Consensus 181 -----fqeql~e~l~rl~~---------~~QTl-----------------lfSatlp~~lv~fak------aGl~~p~-- 221 (529)
T KOG0337|consen 181 -----FQEQLHEILSRLPE---------SRQTL-----------------LFSATLPRDLVDFAK------AGLVPPV-- 221 (529)
T ss_pred -----hHHHHHHHHHhCCC---------cceEE-----------------EEeccCchhhHHHHH------ccCCCCc--
Confidence 33578888888864 45555 7887753 222222 1111110
Q ss_pred EEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC
Q 005155 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 310 (711)
Q Consensus 231 iV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~ 310 (711)
.|=+|. |+...... .
T Consensus 222 ------lVRldv-----------------------------etkise~l------------------------------k 236 (529)
T KOG0337|consen 222 ------LVRLDV-----------------------------ETKISELL------------------------------K 236 (529)
T ss_pred ------eEEeeh-----------------------------hhhcchhh------------------------------h
Confidence 000111 11110000 0
Q ss_pred CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 311 MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 311 l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
+. ....-.++|..++...+.... .....+||+.+...+|.+...|...|+.+..+.+.+.++
T Consensus 237 ~~-----------------f~~~~~a~K~aaLl~il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~ 298 (529)
T KOG0337|consen 237 VR-----------------FFRVRKAEKEAALLSILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQE 298 (529)
T ss_pred hh-----------------eeeeccHHHHHHHHHHHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChH
Confidence 00 112345678877765554332 244789999999999999999999999999998877777
Q ss_pred HhHHHHHHhcCCCccEEEEcCCCcCCcceecCCC
Q 005155 391 AREAETVAQAGRKYAITISTNMAGRGTDIILGGN 424 (711)
Q Consensus 391 ~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~ 424 (711)
+|-..+-..-+.++.+.|.|+.|.||.||.++.|
T Consensus 299 aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 299 ARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred hhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 7777787777779999999999999999999865
|
|
| >PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=168.74 Aligned_cols=79 Identities=35% Similarity=0.568 Sum_probs=74.5
Q ss_pred cccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 625 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 625 ~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
||+|++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++|+++|+.+.++
T Consensus 1 pIe~~~i~~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~~~~ 78 (214)
T PF07516_consen 1 PIESKMISKSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG--EDLEEIILEMIEDVIDDIVDEYIPE 78 (214)
T ss_dssp SB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--SCCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHccc
Confidence 89999999999999999999999999999999999999999999999999965 5799999999999999999998876
Q ss_pred c
Q 005155 705 L 705 (711)
Q Consensus 705 ~ 705 (711)
.
T Consensus 79 ~ 79 (214)
T PF07516_consen 79 K 79 (214)
T ss_dssp S
T ss_pred c
Confidence 5
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B .... |
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=168.65 Aligned_cols=278 Identities=18% Similarity=0.266 Sum_probs=188.5
Q ss_pred CCchhHHHHHHHHh----CCCeEEecCCCcHHHHHHHHHHHH---HHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLH----DGSIAEMKTGEGKTLVSTLAAYLN---ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~----~G~IaEm~TGEGKTLva~Lpa~l~---AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
+|..+|-.+.+.|+ ++-|||.+.|+|||.+|+|..+.. .+.-.++.++.|+++||.+--+-+....+|.+++.
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita 191 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTA 191 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeE
Confidence 78899999999885 566999999999999999988643 23456889999999999998888777777779999
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
..+..+. ...|-.--..+|+.||++-+ .||.+..- -.... ...+.++||||+|+--.++.
T Consensus 192 ~yair~s-k~~rG~~i~eqIviGTPGtv-~Dlm~klk-----~id~~---kikvfVlDEAD~Mi~tqG~~---------- 251 (477)
T KOG0332|consen 192 SYAIRGS-KAKRGNKLTEQIVIGTPGTV-LDLMLKLK-----CIDLE---KIKVFVLDEADVMIDTQGFQ---------- 251 (477)
T ss_pred EEEecCc-ccccCCcchhheeeCCCccH-HHHHHHHH-----hhChh---hceEEEecchhhhhhccccc----------
Confidence 9888775 22233334568999999998 56554311 11233 78899999999997333221
Q ss_pred CccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
.++-.+...++ .+.|+. |||++. .+-+.+ + |.. +|+|
T Consensus 252 -----D~S~rI~~~lP---------~~~Qll-----------------LFSATf--~e~V~~-F-a~k--------ivpn 288 (477)
T KOG0332|consen 252 -----DQSIRIMRSLP---------RNQQLL-----------------LFSATF--VEKVAA-F-ALK--------IVPN 288 (477)
T ss_pred -----ccchhhhhhcC---------CcceEE-----------------eeechh--HHHHHH-H-HHH--------hcCC
Confidence 12233444443 244555 688762 333321 1 112 2223
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeE
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv 314 (711)
-.++++- .|-+++.. +|.+-|
T Consensus 289 ~n~i~Lk-----------------------------~eel~L~~-----------------------------IkQlyv- 309 (477)
T KOG0332|consen 289 ANVIILK-----------------------------REELALDN-----------------------------IKQLYV- 309 (477)
T ss_pred Cceeeee-----------------------------hhhccccc-----------------------------hhhhee-
Confidence 2222221 11122222 222211
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHH
Q 005155 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea 394 (711)
.-..+++|+.+|++ +-....-||. +|||.+...+++|+..|.+.|-...+||+++.-.+|.+
T Consensus 310 ----------------~C~~~~~K~~~l~~-lyg~~tigqs-iIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ 371 (477)
T KOG0332|consen 310 ----------------LCACRDDKYQALVN-LYGLLTIGQS-IIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAA 371 (477)
T ss_pred ----------------eccchhhHHHHHHH-HHhhhhhhhe-EEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHH
Confidence 12457889999987 5555566665 68999999999999999999999999999864444444
Q ss_pred HHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 395 ETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 395 ~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
-|.. +.| ...|.|+||...||+|+.
T Consensus 372 ii~~Fr~g-~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 372 IIDRFREG-KEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHhcC-cceEEEEechhhcccccc
Confidence 4443 566 668999999999999996
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=168.92 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=196.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHH---HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNA---LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~A---L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
+|-.+|--|++...+|+ +++.++|.|||.+|++++.... ..-..|.++.|+++||+|+.+.+..+....+.+|..
T Consensus 48 kPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred CchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 58899999999999999 9999999999999999886331 123578899999999999999999999999999997
Q ss_pred EcCCCC---HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 77 IQRGMI---PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 77 i~~~~~---~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
..++.+ ...+...-.+.||.||+++. +|.|.-+ .+.++ +....++||+|-||...
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV-~dml~~~------~l~~~---~iKmfvlDEaDEmLs~g------------ 185 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRV-FDMLNRG------SLSTD---GIKMFVLDEADEMLSRG------------ 185 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhH-HHhhccc------ccccc---ceeEEeecchHhhhccc------------
Confidence 777654 22334445679999999998 6666432 23344 89999999999999665
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+-.++..+.+.++++. ++. |++++. +.|+... ++.+++.-+
T Consensus 186 ----fkdqI~~if~~lp~~v---------Qv~-----------------l~SAT~--p~~vl~v--t~~f~~~pv----- 226 (397)
T KOG0327|consen 186 ----FKDQIYDIFQELPSDV---------QVV-----------------LLSATM--PSDVLEV--TKKFMREPV----- 226 (397)
T ss_pred ----hHHHHHHHHHHcCcch---------hhe-----------------eecccC--cHHHHHH--HHHhccCce-----
Confidence 3346777777886532 333 677775 3344332 345543211
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
.|.. +.+.+|+.-|..
T Consensus 227 -----~i~v---------------------------kk~~ltl~gikq-------------------------------- 242 (397)
T KOG0327|consen 227 -----RILV---------------------------KKDELTLEGIKQ-------------------------------- 242 (397)
T ss_pred -----EEEe---------------------------cchhhhhhheee--------------------------------
Confidence 1110 001122222211
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhH
Q 005155 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~E 393 (711)
+| +...+++|+.-+++... .-+..+|||++.+.+..+...|..+|.....+|+++.+.+|+
T Consensus 243 --~~-------------i~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~ 303 (397)
T KOG0327|consen 243 --FY-------------INVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERD 303 (397)
T ss_pred --ee-------------eeccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhh
Confidence 01 11223336665554443 445779999999999999999999999999999998888888
Q ss_pred HHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 394 AETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 394 a~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
-....--.-..+|.|.|+.+.||.||.
T Consensus 304 ~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 304 TLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred HHHHHhhcCCceEEeeccccccccchh
Confidence 776664444889999999999999994
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-15 Score=163.95 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhc----CCeEEEEc
Q 005155 7 QIIGGAVLHDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL----GLSVGLIQ 78 (711)
Q Consensus 7 Ql~g~~~L~~G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~L----GLtv~~i~ 78 (711)
|..+.-++.+|. ++.+.||+|||+++.+|+.. .+..+.+++|+..|+.+.++.+..++..+ ++.+....
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~ 78 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVS 78 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEec
Confidence 666677777765 67899999999999999862 45578899999999999999999988755 66777766
Q ss_pred CCCCHHHH--------------------Hhc--cCCCeEEECCCchhhHHHHHhhhcchh---hhhcCCCCCccEEEeec
Q 005155 79 RGMIPEER--------------------RSN--YRCDITYTNNSELGFDYLRDNLAANSE---QLVMRWPKPFHFAIVDE 133 (711)
Q Consensus 79 ~~~~~~~r--------------------~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~---~~v~r~~R~~~~aIVDE 133 (711)
+....+.+ ... -..+| ..||.++ |++|..+....+. ...+. .+.++|+||
T Consensus 79 g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~i-llT~p~~-l~~llr~~~~~~~~~~~~~~~---~~~~iV~DE 153 (357)
T TIGR03158 79 KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPII-LLTNPDI-FVYLTRFAYIDRGDIAAGFYT---KFSTVIFDE 153 (357)
T ss_pred CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCE-EEecHHH-HHHHHhhhccCcccchhhhhc---CCCEEEEec
Confidence 65332211 111 13344 4666665 5665433221111 11234 789999999
Q ss_pred hhhh
Q 005155 134 VDSV 137 (711)
Q Consensus 134 vDs~ 137 (711)
+|..
T Consensus 154 ~H~~ 157 (357)
T TIGR03158 154 FHLY 157 (357)
T ss_pred cccc
Confidence 9984
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=176.78 Aligned_cols=279 Identities=20% Similarity=0.234 Sum_probs=184.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------CEEE--EecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHV--VTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-------~VhV--vT~NdyLA~RDae~~~~~y~~L 70 (711)
.|+|+|..+.+.+++|+ +.-..||+|||++|.||++ +.|... +|++ |||=..|+...-..+....+.+
T Consensus 22 ~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil-~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~ 100 (814)
T COG1201 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI-NELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL 100 (814)
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHH-HHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999 9999999999999999997 666322 3666 5666788887777788888899
Q ss_pred CCeEEEEcCCCCHHHHHhccC--CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~~~~r~~aY~--~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
|+.|.+-.|++++.+|+..-. .||+..||..|+.-..-.+ -...++ ++.|+||||+|.+...+.-.
T Consensus 101 G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~-----~r~~l~---~vr~VIVDEiHel~~sKRG~---- 168 (814)
T COG1201 101 GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPK-----FRELLR---DVRYVIVDEIHALAESKRGV---- 168 (814)
T ss_pred CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHH-----HHHHhc---CCcEEEeehhhhhhccccch----
Confidence 999999999998877776543 5999999999854322221 123556 89999999999985222110
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
.++-...+ ...+-
T Consensus 169 --------~Lsl~LeR-------------------------------------------------------L~~l~---- 181 (814)
T COG1201 169 --------QLALSLER-------------------------------------------------------LRELA---- 181 (814)
T ss_pred --------hhhhhHHH-------------------------------------------------------HHhhC----
Confidence 00000000 00100
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHH--HHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE--KEFL 306 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~--~Ef~ 306 (711)
| .+| --|+|+|.++.. ..|.
T Consensus 182 ----------------~----------------------------------~~q--------RIGLSATV~~~~~varfL 203 (814)
T COG1201 182 ----------------G----------------------------------DFQ--------RIGLSATVGPPEEVAKFL 203 (814)
T ss_pred ----------------c----------------------------------ccE--------EEeehhccCCHHHHHHHh
Confidence 0 000 126666666432 2333
Q ss_pred HHcC--CCeEEeCCCCCc-ccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCC-CCeEE
Q 005155 307 KMFQ--MPVIEVPTNLPN-IRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG-IPHNV 382 (711)
Q Consensus 307 ~iY~--l~vv~IPt~~p~-~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~g-i~~~v 382 (711)
--++ ..++.++-.++. .+.-.|..-......-|.++++.|.+..++.+.+||||+|...+|.++..|++.+ ++..+
T Consensus 204 ~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~ 283 (814)
T COG1201 204 VGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEV 283 (814)
T ss_pred cCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceee
Confidence 3333 122333333322 1111111111111456677778888877888899999999999999999999987 88888
Q ss_pred EeCCCc-chHhHHHHHHhcCCCccEEEEcCCCcCCcce
Q 005155 383 LNARPK-YAAREAETVAQAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 383 LnA~~~-~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDI 419 (711)
.|+... ....+++=--+.|. -.+.|||.-.--|+||
T Consensus 284 HHgSlSre~R~~vE~~lk~G~-lravV~TSSLELGIDi 320 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGE-LKAVVATSSLELGIDI 320 (814)
T ss_pred ecccccHHHHHHHHHHHhcCC-ceEEEEccchhhcccc
Confidence 887422 22233444446675 5677999999999999
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=170.63 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCC---CCeEEEeCCCcchHh---HHHHHHh---cCCC--ccEEE
Q 005155 340 EYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG---IPHNVLNARPKYAAR---EAETVAQ---AGRK--YAITI 408 (711)
Q Consensus 340 ~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~g---i~~~vLnA~~~~~~~---Ea~Iia~---AG~~--G~VTI 408 (711)
.++++.+.+..+.|.+|||||+|++.++.+++.|++.+ .++.++|++.....| |.++++. .|+. +.|.|
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 35666676666789999999999999999999999875 678899997544444 4456553 3432 67999
Q ss_pred EcCCCcCCcceec
Q 005155 409 STNMAGRGTDIIL 421 (711)
Q Consensus 409 ATnmAGRGTDIkL 421 (711)
||+.+.||+||..
T Consensus 627 aTQViE~GLDId~ 639 (878)
T PRK09694 627 ATQVVEQSLDLDF 639 (878)
T ss_pred ECcchhheeecCC
Confidence 9999999999954
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=166.34 Aligned_cols=244 Identities=21% Similarity=0.272 Sum_probs=173.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RC 92 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~ 92 (711)
+.|=.-|+|||+||+++++...-.|.+|-++.||+-||+|-++.+.+++.-+||+|++.+|.+....|++.. ..
T Consensus 287 LlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~ 366 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEI 366 (677)
T ss_pred HhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCC
Confidence 444457999999999999977779999999999999999999999999999999999999999988887665 36
Q ss_pred CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccC
Q 005155 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG 172 (711)
Q Consensus 93 DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~ 172 (711)
||++||..=| .|... .. ++.++||||-|++=.-.
T Consensus 367 ~ivVGTHALi-----Qd~V~-------F~---~LgLVIiDEQHRFGV~Q------------------------------- 400 (677)
T COG1200 367 DIVVGTHALI-----QDKVE-------FH---NLGLVIIDEQHRFGVHQ------------------------------- 400 (677)
T ss_pred CEEEEcchhh-----hccee-------ec---ceeEEEEeccccccHHH-------------------------------
Confidence 9999999765 34322 33 78999999999862110
Q ss_pred CCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccc
Q 005155 173 LHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRR 252 (711)
Q Consensus 173 ~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ 252 (711)
+.+|++ ++..
T Consensus 401 ------------------------------------------R~~L~~-----KG~~----------------------- 410 (677)
T COG1200 401 ------------------------------------------RLALRE-----KGEQ----------------------- 410 (677)
T ss_pred ------------------------------------------HHHHHH-----hCCC-----------------------
Confidence 011111 1100
Q ss_pred cChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC-CCeEE---eCCCCCcccccCC
Q 005155 253 WSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ-MPVIE---VPTNLPNIRVDLP 328 (711)
Q Consensus 253 ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~-l~vv~---IPt~~p~~R~d~~ 328 (711)
|+.+.-||+|-=. +.--...|| |+|-. .|+- |+.-.
T Consensus 411 -----------------------------------~Ph~LvMTATPIP-RTLAlt~fgDldvS~IdElP~G----RkpI~ 450 (677)
T COG1200 411 -----------------------------------NPHVLVMTATPIP-RTLALTAFGDLDVSIIDELPPG----RKPIT 450 (677)
T ss_pred -----------------------------------CCcEEEEeCCCch-HHHHHHHhccccchhhccCCCC----CCceE
Confidence 2334446665432 111234554 56544 3554 33222
Q ss_pred CeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHH--------HHHHHHHC--CCCeEEEeCCCcchHhHHHHHH
Q 005155 329 IQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY--------LSDLLKQQ--GIPHNVLNARPKYAAREAETVA 398 (711)
Q Consensus 329 d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~--------Ls~~L~~~--gi~~~vLnA~~~~~~~Ea~Iia 398 (711)
..+.. .++...+++.|.+...+||.+-++|+=|++||. +++.|+.. +....++|++++.+++++.+-+
T Consensus 451 T~~i~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~ 528 (677)
T COG1200 451 TVVIP--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEA 528 (677)
T ss_pred EEEec--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHH
Confidence 33332 345556677777777899999999999999873 45666643 4567899999999888888877
Q ss_pred hcCCCccEEEEcCCCcCCccee
Q 005155 399 QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIk 420 (711)
..-....|.|||..--=|+|+.
T Consensus 529 Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 529 FKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HHcCCCcEEEEeeEEEecccCC
Confidence 4444889999999988888874
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=159.13 Aligned_cols=271 Identities=23% Similarity=0.282 Sum_probs=193.1
Q ss_pred chhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 4 FDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 4 ~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|||.+++=+ |++|. ++-..|++||||+.-|+-.-++|. |++-..++|=-.||.|-+++|..=|.-||++|++-+|
T Consensus 218 lPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG 297 (830)
T COG1202 218 LPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVG 297 (830)
T ss_pred cchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEec
Confidence 5899998875 77887 888999999999999999989998 7889999999999999999999999999999987665
Q ss_pred CCCHHHHH------hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 80 GMIPEERR------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 80 ~~~~~~r~------~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
-.-...+. -.-.|||++||-. |+|||..- ...+. ....++|||+|.+ -|+-|-|
T Consensus 298 ~srIk~~~~pv~~~t~~dADIIVGTYE--GiD~lLRt------g~~lg---diGtVVIDEiHtL-~deERG~-------- 357 (830)
T COG1202 298 MSRIKTREEPVVVDTSPDADIIVGTYE--GIDYLLRT------GKDLG---DIGTVVIDEIHTL-EDEERGP-------- 357 (830)
T ss_pred hhhhcccCCccccCCCCCCcEEEeech--hHHHHHHc------CCccc---ccceEEeeeeeec-cchhccc--------
Confidence 32221111 1246899999986 68998531 12333 7889999999985 4554433
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
.++-++..| +++|. +
T Consensus 358 -------RLdGLI~RL---------------------------------------------------r~l~~-~------ 372 (830)
T COG1202 358 -------RLDGLIGRL---------------------------------------------------RYLFP-G------ 372 (830)
T ss_pred -------chhhHHHHH---------------------------------------------------HHhCC-C------
Confidence 222222222 22221 0
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
..+.|+|+|.|+. +|+.+..|+..
T Consensus 373 -------------------------------------------------------AQ~i~LSATVgNp-~elA~~l~a~l 396 (830)
T COG1202 373 -------------------------------------------------------AQFIYLSATVGNP-EELAKKLGAKL 396 (830)
T ss_pred -------------------------------------------------------CeEEEEEeecCCh-HHHHHHhCCee
Confidence 0134677777763 34555566654
Q ss_pred EEeCCCCCc--ccccCCCeEEeC-hhHHHHHHHHHHHHhh----hcC--CcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 314 IEVPTNLPN--IRVDLPIQSFAT-ARGKWEYARQEVESMF----RLG--RPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 314 v~IPt~~p~--~R~d~~d~i~~t-~~~K~~aIi~ei~~~~----~~g--rPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
|.- -++|+ -| ..+|.. +.+||+-|.+.+++-. .+| -..+|||.|-..++.|+..|..+|++..--|
T Consensus 397 V~y-~~RPVplEr----Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYH 471 (830)
T COG1202 397 VLY-DERPVPLER----HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYH 471 (830)
T ss_pred Eee-cCCCCChhH----eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccccccc
Confidence 422 12332 22 456665 8899998877776543 222 2489999999999999999999999999999
Q ss_pred CCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|+..+.+|-..-.+.|-+.-++.|.|.-.|=|+|+.
T Consensus 472 aGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP 507 (830)
T COG1202 472 AGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP 507 (830)
T ss_pred CCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCc
Confidence 987776554333334445668889999999999996
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-14 Score=162.83 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=62.7
Q ss_pred EeChhHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEE
Q 005155 332 FATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIA 409 (711)
+..+..|+.++...+ +.| ..|.++||||.++..++.++..| |. .+|++++.+.+|+.-+-. +.|..-.+.|+
T Consensus 475 ~~~np~K~~~~~~Li-~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 475 YVMNPNKFRACQFLI-RFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhChHHHHHHHHHH-HHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 445667888765444 445 47899999999999999999887 33 468888777777765555 34545588999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+.+++|+|+.
T Consensus 549 SkVgdeGIDlP 559 (732)
T TIGR00603 549 SKVGDTSIDLP 559 (732)
T ss_pred ecccccccCCC
Confidence 99999999995
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-13 Score=157.33 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=91.7
Q ss_pred CchhHHHHHHHHhCC---C--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 3 HFDVQIIGGAVLHDG---S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 3 p~dvQl~g~~~L~~G---~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
+++.|.-+.-.+.++ + ++.+.||+|||.+++.++.-....|++|.|++|+..||.|-.+.+.. .||.+++.+
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~---~fg~~v~~~ 221 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRA---RFGAPVAVL 221 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCCEEEE
Confidence 577888777777653 2 89999999999999887653233589999999999999998887765 458999999
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+++++.+|...+ .++|++||.+.+ | .-.+ ++.++||||+|...
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~-------------~p~~---~l~liVvDEeh~~s 271 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSAL-F-------------LPFK---NLGLIIVDEEHDSS 271 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-c-------------cccc---CCCEEEEECCCccc
Confidence 9999988776544 469999998765 1 1133 78999999999754
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=152.58 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=109.5
Q ss_pred HHHHHHHhCCCeEEecCCCcHHHHHHHHHH-HHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCC---eEEEEcCCCCH
Q 005155 8 IIGGAVLHDGSIAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL---SVGLIQRGMIP 83 (711)
Q Consensus 8 l~g~~~L~~G~IaEm~TGEGKTLva~Lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL---tv~~i~~~~~~ 83 (711)
.+++=+|.++.++-|.||=|||.+|+|-+. .....|+.|.++.|+.=|..|.++.+. +++|+ .++..+|..+|
T Consensus 22 ~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~---~v~~ip~~~i~~ltGev~p 98 (542)
T COG1111 22 NIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCR---KVTGIPEDEIAALTGEVRP 98 (542)
T ss_pred HHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHH---HHhCCChhheeeecCCCCh
Confidence 466668888889999999999998777664 334455589999999999998777655 45566 45688889999
Q ss_pred HHHHhccC-CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh------------hhhcCCCceeccC
Q 005155 84 EERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV------------LIDEGRNPLLISG 150 (711)
Q Consensus 84 ~~r~~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~------------LiDea~tPLiiSg 150 (711)
++|.+.|. +.|.++||--+.-|.+.-.+. .. .+..+|.||||+- .+-.+.+|+|+.=
T Consensus 99 ~~R~~~w~~~kVfvaTPQvveNDl~~Grid-------~~---dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 99 EEREELWAKKKVFVATPQVVENDLKAGRID-------LD---DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred HHHHHHHhhCCEEEeccHHHHhHHhcCccC-------hH---HceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 99999987 599999998886666543332 22 7889999999953 2344889998853
Q ss_pred CCCCCccchHHHHHHHHHcc
Q 005155 151 EASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~ 170 (711)
..++.+ .-..+.++++.|-
T Consensus 169 TASPGs-~~ekI~eV~~nLg 187 (542)
T COG1111 169 TASPGS-DLEKIQEVVENLG 187 (542)
T ss_pred ecCCCC-CHHHHHHHHHhCC
Confidence 322222 2345677777763
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-14 Score=172.20 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCe---EEEeCCCcchHhHHHHHHhcCCCccEEEEcC
Q 005155 336 RGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPH---NVLNARPKYAAREAETVAQAGRKYAITISTN 411 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~---~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATn 411 (711)
.++..++++.+...+ .....||||+++.++.+.+++.|.+.++++ -.||++..+.+++. +....| .-.|.||||
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~-Vf~~~g-~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR-VFQSHS-GRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHH-HhcccC-CeeEEEecc
Confidence 345566666555443 334579999999999999999999998874 35788765555554 333445 458999999
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
+|.||+||.
T Consensus 346 IAEtSITIp 354 (1294)
T PRK11131 346 VAETSLTVP 354 (1294)
T ss_pred HHhhccccC
Confidence 999999995
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-12 Score=151.23 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHH-HHCCCCeEEEeCCCcchHhHHHHHHhc-CC-CccEEEEcCC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLNARPKYAAREAETVAQA-GR-KYAITISTNM 412 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L-~~~gi~~~vLnA~~~~~~~Ea~Iia~A-G~-~G~VTIATnm 412 (711)
..|...+++.++.. .+.+|||||.+.+.++.|++.| ...|+++.++|+++.+.+|+..+-..+ +. ...|.|||+.
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 46777787776543 4779999999999999999999 567999999999988888887766544 32 4689999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
+|||.|+.
T Consensus 556 gseGlNlq 563 (956)
T PRK04914 556 GSEGRNFQ 563 (956)
T ss_pred hccCCCcc
Confidence 99999984
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-13 Score=162.15 Aligned_cols=278 Identities=21% Similarity=0.234 Sum_probs=186.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCC--EEEEecCHHHHHHHHHHHHHHhhhcC--CeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEG--VHVVTVNDYLAQRDAEWMERVHRFLG--LSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~--VhVvT~NdyLA~RDae~~~~~y~~LG--Ltv~ 75 (711)
++|.-|.-+.-.+++|+ |+.-.||+|||++|.+|++=+.|.+.. ..++.|+..||....+.+..+-.-+| ++++
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 47999999999999998 999999999999999999877777765 49999999999999999999999888 8889
Q ss_pred EEcCCCCHHHHHhccC--CCeEEECCCchhhHHHHHhhhcchh-h-hhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 76 LIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSE-Q-LVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY~--~DI~YgT~~elgfDyLrD~l~~~~~-~-~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
...|+.++++|+..|. +||+.+++. + .+| .+..+.+ - ...+ .+.|+||||+|.= +.++
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpd-M-Lh~---~llr~~~~~~~~~~---~Lk~lVvDElHtY--rGv~-------- 211 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPD-M-LHY---LLLRNHDAWLWLLR---NLKYLVVDELHTY--RGVQ-------- 211 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHH-H-HHH---HhccCcchHHHHHh---cCcEEEEecceec--cccc--------
Confidence 8999999988877765 599966653 2 233 2221111 1 2234 7999999999982 3311
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
-++ ..++. +.|+.
T Consensus 212 -----------------------------------------------------GS~---vA~ll-----RRL~~------ 224 (851)
T COG1205 212 -----------------------------------------------------GSE---VALLL-----RRLLR------ 224 (851)
T ss_pred -----------------------------------------------------hhH---HHHHH-----HHHHH------
Confidence 000 00111 11110
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhc---CccccccCCcccHHHHHHHH
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY---PKLSGMTGTAKTEEKEFLKM 308 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y---~kl~GmTGTa~te~~Ef~~i 308 (711)
+++.| +.+..+|+|.++..+-..+.
T Consensus 225 ----------------------------------------------------~~~~~~~~~q~i~~SAT~~np~e~~~~l 252 (851)
T COG1205 225 ----------------------------------------------------RLRRYGSPLQIICTSATLANPGEFAEEL 252 (851)
T ss_pred ----------------------------------------------------HHhccCCCceEEEEeccccChHHHHHHh
Confidence 00011 13557889998877777788
Q ss_pred cCCCeEE-eCCCCCcc--c---ccCCCeEEeC---hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHH----HHHHH
Q 005155 309 FQMPVIE-VPTNLPNI--R---VDLPIQSFAT---ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS----DLLKQ 375 (711)
Q Consensus 309 Y~l~vv~-IPt~~p~~--R---~d~~d~i~~t---~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls----~~L~~ 375 (711)
.|.++.. |.-..-.. | ...|...+.. ..+++..+...+...+..|...|+||.|-..+|.+. +.+..
T Consensus 253 ~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~ 332 (851)
T COG1205 253 FGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVR 332 (851)
T ss_pred cCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhh
Confidence 8887765 43321110 0 0111111111 125666555556666789999999999999999996 45555
Q ss_pred CC----CCeEEEeCCCcchHhHHHHHH---hcCCCccEEEEcCCCcCCcce
Q 005155 376 QG----IPHNVLNARPKYAAREAETVA---QAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 376 ~g----i~~~vLnA~~~~~~~Ea~Iia---~AG~~G~VTIATnmAGRGTDI 419 (711)
.+ ..+.+-.+. .+..|...|. +.| ...+.||||++==|+||
T Consensus 333 ~~~~l~~~v~~~~~~--~~~~er~~ie~~~~~g-~~~~~~st~Alelgidi 380 (851)
T COG1205 333 EGGKLLDAVSTYRAG--LHREERRRIEAEFKEG-ELLGVIATNALELGIDI 380 (851)
T ss_pred cchhhhhheeecccc--CCHHHHHHHHHHHhcC-CccEEecchhhhhceee
Confidence 55 334444554 3445544333 455 55778999999999999
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=147.66 Aligned_cols=262 Identities=20% Similarity=0.247 Sum_probs=180.0
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
+-|.-.+-.+++|+ |+-|.||-||||.|-+||++. .| -+.||+|==.|=+...+.+ ...|+.++++.+.++
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G-~TLVVSPLiSLM~DQV~~l----~~~Gi~A~~lnS~l~ 92 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG-LTLVVSPLISLMKDQVDQL----EAAGIRAAYLNSTLS 92 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CC-CEEEECchHHHHHHHHHHH----HHcCceeehhhcccC
Confidence 45777777788887 999999999999999999864 55 5667777666655444333 457899999999999
Q ss_pred HHHHHhccC------CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcC--CCceeccCCCCC
Q 005155 83 PEERRSNYR------CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG--RNPLLISGEASK 154 (711)
Q Consensus 83 ~~~r~~aY~------~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea--~tPLiiSg~~~~ 154 (711)
.++++..+. .+++|-+|.+|.-.+.++.+.. - ++..++|||||.+. +=+ +-|
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~-------~---~i~l~vIDEAHCiS-qWGhdFRP--------- 152 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKR-------L---PISLVAIDEAHCIS-QWGHDFRP--------- 152 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHh-------C---CCceEEechHHHHh-hcCCccCH---------
Confidence 888876543 4999999999987777776652 1 68889999999984 110 000
Q ss_pred CccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeC
Q 005155 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 234 (711)
.|..+-.+...|+
T Consensus 153 ---~Y~~lg~l~~~~~---------------------------------------------------------------- 165 (590)
T COG0514 153 ---DYRRLGRLRAGLP---------------------------------------------------------------- 165 (590)
T ss_pred ---hHHHHHHHHhhCC----------------------------------------------------------------
Confidence 1111111111110
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC-
Q 005155 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP- 312 (711)
Q Consensus 235 ~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~- 312 (711)
-..+..+|+||... .....+..++.
T Consensus 166 -----------------------------------------------------~~p~~AlTATA~~~v~~DI~~~L~l~~ 192 (590)
T COG0514 166 -----------------------------------------------------NPPVLALTATATPRVRDDIREQLGLQD 192 (590)
T ss_pred -----------------------------------------------------CCCEEEEeCCCChHHHHHHHHHhcCCC
Confidence 01245677787653 35566655553
Q ss_pred --eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 313 --VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 313 --vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
++..-.++|.++...-. ..+...+..-|.+ ..+..++|-+|+|.|...+|.+++.|...|+....-||++...
T Consensus 193 ~~~~~~sfdRpNi~~~v~~--~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~ 267 (590)
T COG0514 193 ANIFRGSFDRPNLALKVVE--KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNE 267 (590)
T ss_pred cceEEecCCCchhhhhhhh--cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHH
Confidence 45566778877633211 1123344442222 2457888999999999999999999999999999999987665
Q ss_pred HhHHHHHHhcCC--CccEEEEcCCCcCCccee
Q 005155 391 AREAETVAQAGR--KYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia~AG~--~G~VTIATnmAGRGTDIk 420 (711)
+|| .+.++-. ...|.|||+=.|=|+|-.
T Consensus 268 eR~--~~q~~f~~~~~~iiVAT~AFGMGIdKp 297 (590)
T COG0514 268 ERE--RVQQAFLNDEIKVMVATNAFGMGIDKP 297 (590)
T ss_pred HHH--HHHHHHhcCCCcEEEEeccccCccCCC
Confidence 554 3434333 568999999999999985
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=147.80 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=76.5
Q ss_pred EecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCC
Q 005155 21 EMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCD 93 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~~D 93 (711)
...||+|||+++...+. .++ .|++|.|++|...|+.|-++.+.. .||..+.+..+++++.+|...+ .++
T Consensus 3 ~g~TGsGKT~v~l~~i~-~~l~~g~~vLvlvP~i~L~~Q~~~~l~~---~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 3 FGVTGSGKTEVYLQAIE-KVLALGKSVLVLVPEIALTPQMIQRFKY---RFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred cCCCCCCHHHHHHHHHH-HHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 34699999999865543 455 588999999999999988877665 4588999999999887776554 479
Q ss_pred eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
|++||.+.+ | .-.. ++..+||||+|.....
T Consensus 79 IVVGTrsal-f-------------~p~~---~l~lIIVDEeh~~syk 108 (505)
T TIGR00595 79 VVIGTRSAL-F-------------LPFK---NLGLIIVDEEHDSSYK 108 (505)
T ss_pred EEECChHHH-c-------------Cccc---CCCEEEEECCCccccc
Confidence 999998755 2 1133 7899999999986543
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=142.22 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=98.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---CC-CEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---GE-GVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---G~-~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
-|-.||--+++--.-|. ++|.+.|-|||.+|+|+.+ +.|. |. .|.|+|.+++||-|...++..|-+++ +++|
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~tl-qqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhhh-hhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 37789999999555565 9999999999999999885 6663 42 68899999999999999999999988 8999
Q ss_pred EEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++..||++... -...--.+|++|||+++ ....|.. .+.+. +....|+||+|.||
T Consensus 143 aVFfGG~~Ikkdee~lk~~PhivVgTPGri-lALvr~k------~l~lk---~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 143 SVFFGGLFIKKDEELLKNCPHIVVGTPGRI-LALVRNR------SLNLK---NVKHFVLDECDKML 198 (387)
T ss_pred EEEEcceeccccHHHHhCCCeEEEcCcHHH-HHHHHhc------cCchh---hcceeehhhHHHHH
Confidence 99999987322 12222448999999997 2333321 23444 77889999999998
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=160.86 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhh-cCCcEEEEecchhhHHHHHHHHHHCCCC---eEEEeCCCcchHhHHHHHHhcCCCccEEEEcCC
Q 005155 337 GKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP---HNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (711)
Q Consensus 337 ~K~~aIi~ei~~~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~---~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnm 412 (711)
++..++++.+...+. ....||||+++..+.+.+++.|.+.+.+ +-.||+...+.+++.. ... +..-.|.||||+
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~v-f~~-~~~rkIVLATNI 339 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRV-FQP-HSGRRIVLATNV 339 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHH-hCC-CCCceEEEeccH
Confidence 355566665655432 3457999999999999999999987654 4568887655555533 332 323589999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
|.||+||.
T Consensus 340 AEtSLTIp 347 (1283)
T TIGR01967 340 AETSLTVP 347 (1283)
T ss_pred HHhccccC
Confidence 99999994
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=126.57 Aligned_cols=127 Identities=21% Similarity=0.257 Sum_probs=104.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|++.|..+...+++|+ ++++.||.|||+++++|+.-.... |..|.|++|+..|+.+-++.+..+....++.+
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceE
Confidence 48999999999999887 999999999999999998643333 33699999999999999999999988889999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY--~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+..++.+.......| +++|+++|+..+ .+++..+ . ...+ .+.++||||+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~----~--~~~~---~l~~lIvDE~h~~~ 156 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRL-LDLLERG----K--LDLS---KVKYLVLDEADRML 156 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC----C--CChh---hCCEEEEeChHHhh
Confidence 9999988766655566 789999999877 4444322 1 2234 78999999999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=137.33 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=81.5
Q ss_pred CCCchhHHHHHHHHh---CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe--E
Q 005155 1 MRHFDVQIIGGAVLH---DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS--V 74 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~---~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt--v 74 (711)
+|||-.|.+-.+.-+ .++ ++.+.||.|||++++-.+. ..+..|.||+||..|..| |...++.+++.. +
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~---~~~~~~Lvlv~~~~L~~Q---w~~~~~~~~~~~~~~ 110 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA---ELKRSTLVLVPTKELLDQ---WAEALKKFLLLNDEI 110 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH---HhcCCEEEEECcHHHHHH---HHHHHHHhcCCcccc
Confidence 355656666666554 444 9999999999999887774 344449999999999996 667888888885 5
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
|.+.++... ... .+|+|+|-..+... .++. ....+ .+..+|+||||.+..+
T Consensus 111 g~~~~~~~~----~~~-~~i~vat~qtl~~~---~~l~----~~~~~---~~~liI~DE~Hh~~a~ 161 (442)
T COG1061 111 GIYGGGEKE----LEP-AKVTVATVQTLARR---QLLD----EFLGN---EFGLIIFDEVHHLPAP 161 (442)
T ss_pred ceecCceec----cCC-CcEEEEEhHHHhhh---hhhh----hhccc---ccCEEEEEccccCCcH
Confidence 655444211 111 67999997666321 1111 22233 7999999999998543
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-12 Score=119.69 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=99.9
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~--~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
+|.|.-+...+.+|+ ++.+.||.|||+++.+|++-....++ .+.+++|+.+|+.+-++++..++...++++..+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 478999999888777 99999999999999999974445555 89999999999999999999999999999999998
Q ss_pred CCCHH-HH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhh
Q 005155 80 GMIPE-ER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 80 ~~~~~-~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
+.+.. .. .....++|+++|+..| +++++. . ..... .+.++|+||+|.+.-
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~----~--~~~~~---~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQL-LDLISN----G--KINIS---RLSLIVIDEAHHLSD 133 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHH-HHHHHT----T--SSTGT---TESEEEEETHHHHHH
T ss_pred cccccccccccccccccccccCcchh-hccccc----c--ccccc---cceeeccCccccccc
Confidence 87733 22 2334699999999876 333332 1 11223 589999999999864
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-10 Score=137.08 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=83.9
Q ss_pred ehhHhhhcCccccccCCccc--HHHHHHHHcCCC---eEEe-CCCCCc---cc----ccCCCeEEeChhHHHHHHHHHHH
Q 005155 281 YQSLFKLYPKLSGMTGTAKT--EEKEFLKMFQMP---VIEV-PTNLPN---IR----VDLPIQSFATARGKWEYARQEVE 347 (711)
Q Consensus 281 ~q~~F~~Y~kl~GmTGTa~t--e~~Ef~~iY~l~---vv~I-Pt~~p~---~R----~d~~d~i~~t~~~K~~aIi~ei~ 347 (711)
.+.+|..+..+..+|||+.. .-+-|.+..|++ +..+ |+-.+. .+ .|.|..-..+.++-..++++.|.
T Consensus 588 ~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~ 667 (850)
T TIGR01407 588 TKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYII 667 (850)
T ss_pred HHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHH
Confidence 35666777788888999874 334566777874 1223 443331 11 11221112233444557777776
Q ss_pred Hhhh-cCCcEEEEecchhhHHHHHHHHHH----CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 348 SMFR-LGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 348 ~~~~-~grPVLV~t~Si~~SE~Ls~~L~~----~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+... .+.++||+|+|.+..+.++..|.. .+++ ++.-. .+..++.-+-. +.| .+.|.++|+-+.+|+|+.
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~-~~~~r~~ll~~F~~~-~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQG-INGSRAKIKKRFNNG-EKAILLGTSSFWEGVDFP 742 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecC-CCccHHHHHHHHHhC-CCeEEEEcceeecccccC
Confidence 6543 445799999999999999999976 2333 34322 12234433322 345 678999999999999998
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=133.37 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=95.4
Q ss_pred hHHHHHHHHh---CCCeEEecCCCcHHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 6 VQIIGGAVLH---DGSIAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 6 vQl~g~~~L~---~G~IaEm~TGEGKTLva~Lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+|-++-+... ++.|+.+.||.|||-+|.|.++ +.+. +-++-=|.|...||.--.+.+.+=+..||
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~IL-r~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g 192 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCIL-RTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG 192 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHH-HHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc
Confidence 5767766554 3459999999999999999985 8876 23677899999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 72 LSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
++|.-.+|++.- -+.+.-.|||++.||.- ||.+-..-..+ ...+. ....+||||||-+ -|+
T Consensus 193 i~v~ELTGD~ql-~~tei~~tqiiVTTPEK--wDvvTRk~~~d--~~l~~---~V~LviIDEVHlL-hd~ 253 (1230)
T KOG0952|consen 193 ISVRELTGDTQL-TKTEIADTQIIVTTPEK--WDVVTRKSVGD--SALFS---LVRLVIIDEVHLL-HDD 253 (1230)
T ss_pred ceEEEecCcchh-hHHHHHhcCEEEecccc--eeeeeeeeccc--hhhhh---heeeEEeeeehhh-cCc
Confidence 999999999753 23347889999999987 45442221111 12333 5789999999954 454
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-10 Score=134.74 Aligned_cols=113 Identities=26% Similarity=0.339 Sum_probs=89.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITY 96 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~Y 96 (711)
|+.+.||+|||++|.|+++ +.|. |.+|.-|+|...||..-++++. =++.+|++|+..+++++... .....|||++
T Consensus 51 li~aPTgsGKTlIA~lai~-~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~-~~l~~~~ViV 127 (766)
T COG1204 51 LISAPTGSGKTLIALLAIL-STLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDD-ERLARYDVIV 127 (766)
T ss_pred EEEcCCCCchHHHHHHHHH-HHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccch-hhhccCCEEE
Confidence 9999999999999999997 6665 4789999999999999999998 88999999999999986432 4567899999
Q ss_pred ECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCc
Q 005155 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (711)
Q Consensus 97 gT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tP 145 (711)
+|+.-| |-|..+-. . ... .++.+||||+|-+- |+-|-|
T Consensus 128 tT~EK~--Dsl~R~~~----~-~~~---~V~lvViDEiH~l~-d~~RG~ 165 (766)
T COG1204 128 TTPEKL--DSLTRKRP----S-WIE---EVDLVVIDEIHLLG-DRTRGP 165 (766)
T ss_pred EchHHh--hHhhhcCc----c-hhh---cccEEEEeeeeecC-CcccCc
Confidence 999875 43332211 1 333 78999999999863 553544
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=106.27 Aligned_cols=88 Identities=22% Similarity=0.313 Sum_probs=68.5
Q ss_pred EeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEc
Q 005155 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST 410 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIAT 410 (711)
..+.+.|...+.+.+.+..+.+.++||||+++..++.+.+.|++.++++..+++.....++.+.+-+ +.| ...|+|+|
T Consensus 7 ~~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~ili~t 85 (131)
T cd00079 7 LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIVVLVAT 85 (131)
T ss_pred EECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEc
Confidence 3444478888888888766678999999999999999999999999999999987543333332322 233 35699999
Q ss_pred CCCcCCccee
Q 005155 411 NMAGRGTDII 420 (711)
Q Consensus 411 nmAGRGTDIk 420 (711)
+++|+|+|+.
T Consensus 86 ~~~~~G~d~~ 95 (131)
T cd00079 86 DVIARGIDLP 95 (131)
T ss_pred ChhhcCcChh
Confidence 9999999983
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-09 Score=126.93 Aligned_cols=130 Identities=14% Similarity=0.024 Sum_probs=75.3
Q ss_pred CchhHHHHHHHH----hCC---CeEEecCCCcHHHHHHHHHHHH--HHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 3 HFDVQIIGGAVL----HDG---SIAEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 3 p~dvQl~g~~~L----~~G---~IaEm~TGEGKTLva~Lpa~l~--AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+.|-|.-++-.+ .+| -++.|.||+|||++++..++.. +-..+.|.++++...|..|-.+.|..+.-.-+.+
T Consensus 414 lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~ 493 (1123)
T PRK11448 414 LRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQT 493 (1123)
T ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccc
Confidence 455676666543 233 3999999999999865554421 1134689999999999999988887763222222
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+..+.+...-......-...|+++|.-.|.-..+. ..+......+..++++||||||+.
T Consensus 494 ~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~-----~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 494 FASIYDIKGLEDKFPEDETKVHVATVQGMVKRILY-----SDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred hhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhc-----cccccccCCCCcccEEEEECCCCC
Confidence 22121111111122234578999998765221111 100100011227899999999974
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-08 Score=122.91 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh-cCCCc--cEEEEcC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ-AGRKY--AITISTN 411 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~-AG~~G--~VTIATn 411 (711)
...|...+...+......|..|||||......+.|.+.|...|+++..+++.....+|++.|-.. +..++ .+.++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 45677766666666677899999999999999999999999999999999987667777666653 33233 5789999
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
.+|-|++..
T Consensus 549 AGGlGINLt 557 (1033)
T PLN03142 549 AGGLGINLA 557 (1033)
T ss_pred ccccCCchh
Confidence 999999863
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=129.90 Aligned_cols=270 Identities=20% Similarity=0.213 Sum_probs=177.3
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~ 81 (711)
.+.|.-++.+.+.|+ .+.|.||-||+|.+-|||+ |.+.-..||.|=..|=+... ..+ ...+|....+.+++
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~---l~~gitvVISPL~SLm~DQv---~~L-~~~~I~a~~L~s~q 338 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL---LLGGVTVVISPLISLMQDQV---THL-SKKGIPACFLSSIQ 338 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc---ccCCceEEeccHHHHHHHHH---Hhh-hhcCcceeeccccc
Confidence 367888888999998 9999999999999999998 56667778888778776433 334 56789999999999
Q ss_pred CHHHHHhccC--------CCeEEECCCchh-hHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 82 IPEERRSNYR--------CDITYTNNSELG-FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 82 ~~~~r~~aY~--------~DI~YgT~~elg-fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+..++...|+ .+|+|.||.-+. -.-|...+. .+..| ..+-.++|||||.+.
T Consensus 339 ~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~----~L~~~--~~lal~vIDEAHCVS-------------- 398 (941)
T KOG0351|consen 339 TAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA----DLYAR--GLLALFVIDEAHCVS-------------- 398 (941)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH----hccCC--CeeEEEEecHHHHhh--------------
Confidence 9888777764 489999986542 011111111 11111 136789999999984
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
-| +-||. +. .+++.. | ..+..
T Consensus 399 -----qW------------gHdFR-----------------------------p~---Yk~l~~-l-----~~~~~---- 419 (941)
T KOG0351|consen 399 -----QW------------GHDFR-----------------------------PS---YKRLGL-L-----RIRFP---- 419 (941)
T ss_pred -----hh------------ccccc-----------------------------HH---HHHHHH-H-----HhhCC----
Confidence 00 00111 11 112211 1 01000
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM 311 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l 311 (711)
++ -+.++|+||.+- .+...+--|+
T Consensus 420 ---------------------------------~v----------------------P~iALTATAT~~v~~DIi~~L~l 444 (941)
T KOG0351|consen 420 ---------------------------------GV----------------------PFIALTATATERVREDVIRSLGL 444 (941)
T ss_pred ---------------------------------CC----------------------CeEEeehhccHHHHHHHHHHhCC
Confidence 01 256889999653 3445555544
Q ss_pred ---CeEEeCCCCCcccccCCCeEEeCh-hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCC
Q 005155 312 ---PVIEVPTNLPNIRVDLPIQSFATA-RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (711)
Q Consensus 312 ---~vv~IPt~~p~~R~d~~d~i~~t~-~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~ 387 (711)
.++.--.|+|... ..|-... ......+...++.. ..+++.+|.|.+..++|.++..|...|+.....||++
T Consensus 445 ~~~~~~~~sfnR~NL~----yeV~~k~~~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl 519 (941)
T KOG0351|consen 445 RNPELFKSSFNRPNLK----YEVSPKTDKDALLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGL 519 (941)
T ss_pred CCcceecccCCCCCce----EEEEeccCccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCC
Confidence 3343344555433 3333333 34444566666654 5789999999999999999999999999999999986
Q ss_pred cchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.-.+|+..-.+ ..+ .-+|.+||=+.|=|+|-+
T Consensus 520 ~~~~R~~Vq~~w~~~-~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 520 PPKERETVQKAWMSD-KIRVIVATVAFGMGIDKP 552 (941)
T ss_pred CHHHHHHHHHHHhcC-CCeEEEEEeeccCCCCCC
Confidence 54555532222 444 358999999999999975
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-08 Score=120.76 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=84.5
Q ss_pred hhHhhhcCccccccCCcccH-HHHHHHHcCCCe---EEeCCCCCccc-----ccCCCeEEeChhHHHHHHHHHHHHhhhc
Q 005155 282 QSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMPV---IEVPTNLPNIR-----VDLPIQSFATARGKWEYARQEVESMFRL 352 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~v---v~IPt~~p~~R-----~d~~d~i~~t~~~K~~aIi~ei~~~~~~ 352 (711)
+.+|.....+..+|||+... ...|.+..|++. ..+|.+.+..+ .|.|+.--.+.++...++++.|......
T Consensus 567 ~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~ 646 (820)
T PRK07246 567 SQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQL 646 (820)
T ss_pred HHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 67777777888889998521 112777778742 22332222111 1222211123344555777777666667
Q ss_pred CCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH--hcCCCccEEEEcCCCcCCcceecC
Q 005155 353 GRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDIILG 422 (711)
Q Consensus 353 grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIkLg 422 (711)
+.++||+++|-+.-+.+++.|....+++ +.-+. ...++ .+++ +.+ .++|.++|.-.--|+|+.=|
T Consensus 647 ~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~--~~~~~-~l~~~F~~~-~~~vLlG~~sFwEGVD~p~~ 713 (820)
T PRK07246 647 QQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEK--NGTAY-NIKKRFDRG-EQQILLGLGSFWEGVDFVQA 713 (820)
T ss_pred CCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCC--CccHH-HHHHHHHcC-CCeEEEecchhhCCCCCCCC
Confidence 7899999999999999999998765554 22221 11222 3444 333 56899999999999999633
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=115.25 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=83.9
Q ss_pred chhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 4 FDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
.|.|-.+..+..+|+ -+.|.||.||+|.+-||++ +.|.--.|+.|==.|-+...+ -..-|.+.|....+.
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL---~~~gITIV~SPLiALIkDQiD----HL~~LKVp~~SLNSK 94 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPAL---VHGGITIVISPLIALIKDQID----HLKRLKVPCESLNSK 94 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHH---HhCCeEEEehHHHHHHHHHHH----HHHhcCCchhHhcch
Confidence 578999999998888 8999999999999999997 344433344443333332222 233456677777788
Q ss_pred CCHHHHHhcc--------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 81 MIPEERRSNY--------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 81 ~~~~~r~~aY--------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|+.++|...- .-.+.|-||..-.-|...+.+.. ++.| -.+.|++|||||.+
T Consensus 95 lSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r--~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 95 LSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANR--DVLRYIVVDEAHCV 153 (641)
T ss_pred hhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----Hhhh--ceeeeEEechhhhH
Confidence 8887776432 34799999987766666655542 2332 15789999999998
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=118.79 Aligned_cols=85 Identities=24% Similarity=0.318 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmA 413 (711)
...++..+++++.+..+.|..|||||.|...++.|++.|...|+++.++|+.+.+.+|+..+.. +.| .-.|+|||+++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L 506 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLL 506 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEEEeCHH
Confidence 3456788999999888899999999999999999999999999999999997666666644444 455 45788999999
Q ss_pred cCCccee
Q 005155 414 GRGTDII 420 (711)
Q Consensus 414 GRGTDIk 420 (711)
+||.|+.
T Consensus 507 ~rGfdlp 513 (652)
T PRK05298 507 REGLDIP 513 (652)
T ss_pred hCCcccc
Confidence 9999995
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=96.17 Aligned_cols=111 Identities=24% Similarity=0.280 Sum_probs=85.0
Q ss_pred CCeEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH--HHhccCC
Q 005155 17 GSIAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE--RRSNYRC 92 (711)
Q Consensus 17 G~IaEm~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~--r~~aY~~ 92 (711)
+-+..+.||+|||.++..++..... ..+.+.|++||..|+.+-.+.+...+.. ++.+..+.+...... ......+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 4588999999999998888874444 5579999999999999999988887776 788888877655333 3346788
Q ss_pred CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 93 DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+|+++|+..+...+.... ...+ .++++||||+|.+.
T Consensus 81 ~i~i~t~~~~~~~~~~~~-------~~~~---~~~~iiiDE~h~~~ 116 (144)
T cd00046 81 DIVVGTPGRLLDELERLK-------LSLK---KLDLLILDEAHRLL 116 (144)
T ss_pred CEEEECcHHHHHHHHcCC-------cchh---cCCEEEEeCHHHHh
Confidence 999999987743322221 2233 78999999999985
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=97.99 Aligned_cols=127 Identities=29% Similarity=0.281 Sum_probs=89.3
Q ss_pred CCchhHHHHHHHHhCC-C--eEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDG-S--IAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G-~--IaEm~TGEGKTLva~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.|++.|.-+.-.++++ + +..+.||+|||.+++.+++-....+ +.+.+++|+..++.+-...+..++.........
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEE
Confidence 5788999888887764 3 9999999999999999987555554 789999999999998777777766655533343
Q ss_pred EcCCCC-HHHHH-hccCC-CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 77 IQRGMI-PEERR-SNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 77 i~~~~~-~~~r~-~aY~~-DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.++.. .+... ..-.+ +|+++|++.+ ++.+.. .. .... ++.++||||+|.+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~t~~~l-~~~~~~----~~--~~~~---~~~~iIiDE~h~~~ 142 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRL-LDLLEN----DL--LELS---NVDLVILDEAHRLL 142 (201)
T ss_pred EeCCcchHHHHHHHhcCCCCEEEeChHHH-HHHHHc----CC--cCHh---HCCEEEEECHHHHh
Confidence 444433 22222 22334 9999998765 333322 21 2233 78899999999984
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-07 Score=110.41 Aligned_cols=125 Identities=25% Similarity=0.351 Sum_probs=98.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEE-
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLI- 77 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Ltv~~i- 77 (711)
+|+..|-+=+-.+..|+ =+-+.||-|||---++.++..|..|+.|.+|-||.-|++|-++.+..|-+--| +.+-.+
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~y 161 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVY 161 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 68889999999999999 55678999999765555555899999999999999999999999999987666 655554
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+.++.++|+++- +.||.++|+. ||..|+. .+..- +|+|++||.||++|
T Consensus 162 h~~l~~~ekee~le~i~~gdfdIlitTs~-----FL~k~~e----~L~~~---kFdfifVDDVDA~L 216 (1187)
T COG1110 162 HSALPTKEKEEALERIESGDFDILITTSQ-----FLSKRFE----ELSKL---KFDFIFVDDVDAIL 216 (1187)
T ss_pred ccccchHHHHHHHHHHhcCCccEEEEeHH-----HHHhhHH----Hhccc---CCCEEEEccHHHHH
Confidence 4557777766543 3699999975 4666553 23333 79999999999998
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.6e-08 Score=114.66 Aligned_cols=132 Identities=20% Similarity=0.113 Sum_probs=85.2
Q ss_pred cccccCCcccH-HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeC---hhHHH-HHHHHHHHHhhhcCCcEEEEecchhh
Q 005155 291 LSGMTGTAKTE-EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFAT---ARGKW-EYARQEVESMFRLGRPVLVGSTSVEN 365 (711)
Q Consensus 291 l~GmTGTa~te-~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t---~~~K~-~aIi~ei~~~~~~grPVLV~t~Si~~ 365 (711)
+.-||+|..+. .++|.+.++-...+.++...+.-.+.+...-.. ..+.. ......+....+.|.+|||+|+||..
T Consensus 373 ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~ 452 (733)
T COG1203 373 VLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDR 452 (733)
T ss_pred EEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHH
Confidence 45688898875 455666776655554443322222222111111 01110 12344455556899999999999999
Q ss_pred HHHHHHHHHHCCCCeEEEeCCCcchHh---HHHHHHh-cCCCccEEEEcCCCcCCcceecC
Q 005155 366 SEYLSDLLKQQGIPHNVLNARPKYAAR---EAETVAQ-AGRKYAITISTNMAGRGTDIILG 422 (711)
Q Consensus 366 SE~Ls~~L~~~gi~~~vLnA~~~~~~~---Ea~Iia~-AG~~G~VTIATnmAGRGTDIkLg 422 (711)
|..+...|+..+.+.-+||++.....| |.++.+. +...+-|.|||...-=|+||..+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd 513 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFD 513 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccC
Confidence 999999999998878899997433333 3344433 56678999999999999999643
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-07 Score=98.84 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCe-EEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcc
Q 005155 341 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPH-NVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTD 418 (711)
Q Consensus 341 aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~-~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTD 418 (711)
++...++..+++|+|||||.++|+..|.+++.|++. .-.+ ...++. .++..|.----+-| .-.|.|+|-+.-||+-
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~-d~~R~EkV~~fR~G-~~~lLiTTTILERGVT 370 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE-DQHRKEKVEAFRDG-KITLLITTTILERGVT 370 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-CccHHHHHHHHHcC-ceEEEEEeehhhcccc
Confidence 577788888899999999999999999999999654 2222 334553 34555532222555 5588999999999987
Q ss_pred ee
Q 005155 419 II 420 (711)
Q Consensus 419 Ik 420 (711)
+.
T Consensus 371 fp 372 (441)
T COG4098 371 FP 372 (441)
T ss_pred cc
Confidence 74
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-07 Score=110.32 Aligned_cols=137 Identities=16% Similarity=0.078 Sum_probs=85.4
Q ss_pred hhHhhhcCccccccCCcccH--HHHHHHHcCCC-----eEEeCCCCCcc---c----ccCCCeEEeChhHHHHHHHHHHH
Q 005155 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP-----VIEVPTNLPNI---R----VDLPIQSFATARGKWEYARQEVE 347 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te--~~Ef~~iY~l~-----vv~IPt~~p~~---R----~d~~d~i~~t~~~K~~aIi~ei~ 347 (711)
+.+|........+|||+... -.-|.+..|++ ...+|+-.+.. + .|.|+.-..+.++-...+++.|.
T Consensus 666 ~~l~~~~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~ 745 (928)
T PRK08074 666 DEFFAKKKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIA 745 (928)
T ss_pred HHHHhcCCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHH
Confidence 34556667888999999753 24456777874 35677754431 1 12232112233444567777776
Q ss_pred Hhh-hcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEEeCCCcchHhHHHHHH--hcCCCccEEEEcCCCcCCccee
Q 005155 348 SMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 348 ~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~--~~vLnA~~~~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.. ..+.++||+++|-+.-+.+++.|+..... ..++.-+.....++ .+++ +.+ .+.|.++|.-..-|+|+.
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~-~l~~~F~~~-~~~iLlG~~sFwEGVD~p 821 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRA-RLTKQFQQF-DKAILLGTSSFWEGIDIP 821 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHH-HHHHHHHhc-CCeEEEecCcccCccccC
Confidence 665 45569999999999999999999865321 22332111112233 2333 333 578999999999999987
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=111.82 Aligned_cols=181 Identities=18% Similarity=0.236 Sum_probs=114.1
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHh--HhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA--KEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEa--KEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~ 306 (711)
||. .++-+++||+..--...-+.|-.|.+...+. ..|..+.+. ..--..++..|.+.-....-+|.|-+... ..
T Consensus 324 DY~-p~d~lv~iDE~~~~~~q~~~m~~~~~~~~~~lve~g~~lp~~-~~n~~l~~~e~~~~~~q~I~lSaTp~~~e--~~ 399 (655)
T TIGR00631 324 DYF-PDDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEYGFRLPSA-LDNRPLKFEEFEERINQVVYVSATPGPYE--LE 399 (655)
T ss_pred HhC-CCccEEEEecHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCc-ccccCcCHHHHHHhcCCEEEEECCCCcch--hh
Confidence 555 3567888998654444444444444432221 124443311 00113467777666666666776654422 11
Q ss_pred HHcCCCe-EEe-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 307 KMFQMPV-IEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 307 ~iY~l~v-v~I-Pt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
..-++ + ..+ |+..+ + |..-......++..+++++....++|.+|||||.|.+.++.|++.|.+.|+++..+|
T Consensus 400 ~~~~i-v~~i~rp~gl~----~-p~~~v~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh 473 (655)
T TIGR00631 400 QSGNV-VEQIIRPTGLL----D-PEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLH 473 (655)
T ss_pred hccCe-eeeeccccCCC----C-CcEEEeeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeee
Confidence 11111 1 122 22211 1 111223345678889999998888999999999999999999999999999999999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.+.+.+|+..+.. +.| .-.|+||||+++||.|+.
T Consensus 474 ~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 474 SEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLP 509 (655)
T ss_pred CCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeeeC
Confidence 97666666655544 455 457889999999999995
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-07 Score=97.44 Aligned_cols=268 Identities=17% Similarity=0.216 Sum_probs=161.4
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~ 81 (711)
.|.|+-++-+.+.|. +.-|.||-||+|.+-||++ +...-..||+|=-.|-+...- ..+.||++......+.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal---~adg~alvi~plislmedqil----~lkqlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL---CADGFALVICPLISLMEDQIL----QLKQLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH---hcCCceEeechhHHHHHHHHH----HHHHhCcchhhccCcc
Confidence 478998888888877 8899999999999999997 334457899998777764433 3567899988777776
Q ss_pred CHHHHHhc----cC----CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 82 IPEERRSN----YR----CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 82 ~~~~r~~a----Y~----~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.++-+.. -+ -..+|.||..+. ...+-+++-+.... -|-|...-|||||.-- .
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekia----ksk~~mnkleka~~-~~~~~~iaidevhccs--q------------ 229 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIA----KSKKFMNKLEKALE-AGFFKLIAIDEVHCCS--Q------------ 229 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHH----HHHHHHHHHHHHhh-cceeEEEeecceeehh--h------------
Confidence 65543321 11 258899997764 22222222222221 1257788899999852 0
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
-+-||..| |. | -.+++
T Consensus 230 -----------------wghdfr~d-------------------------y~-----------~---l~ilk-------- 245 (695)
T KOG0353|consen 230 -----------------WGHDFRPD-------------------------YK-----------A---LGILK-------- 245 (695)
T ss_pred -----------------hCcccCcc-------------------------hH-----------H---HHHHH--------
Confidence 01122221 00 1 11111
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcC--ccccccCCcccH-HHHHHHHcC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP--KLSGMTGTAKTE-EKEFLKMFQ 310 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~--kl~GmTGTa~te-~~Ef~~iY~ 310 (711)
|+|+ .|.|+|+||.+- -.....+.+
T Consensus 246 ----------------------------------------------------rqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 246 ----------------------------------------------------RQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred ----------------------------------------------------HhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 1111 256777777652 233333333
Q ss_pred CC---eEEeCCCCCcccccCCCeEE---eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEe
Q 005155 311 MP---VIEVPTNLPNIRVDLPIQSF---ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (711)
Q Consensus 311 l~---vv~IPt~~p~~R~d~~d~i~---~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLn 384 (711)
+. .+.---|+|... -.|- .++++-.+.|+..|+.. -.||.-+|.|-|-.++|.++..|+.+||.....|
T Consensus 274 ie~~~tf~a~fnr~nl~----yev~qkp~n~dd~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yh 348 (695)
T KOG0353|consen 274 IEAAFTFRAGFNRPNLK----YEVRQKPGNEDDCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYH 348 (695)
T ss_pred HHhhheeecccCCCCce----eEeeeCCCChHHHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccc
Confidence 32 222233444321 1111 23444445566666544 3789999999999999999999999999887777
Q ss_pred CCCcchHhH-HHHHHhcCCCccEEEEcCCCcCCcce
Q 005155 385 ARPKYAARE-AETVAQAGRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 385 A~~~~~~~E-a~Iia~AG~~G~VTIATnmAGRGTDI 419 (711)
|.++-..+- ++--=-|| .-+|.|||=-.|-|+|=
T Consensus 349 a~lep~dks~~hq~w~a~-eiqvivatvafgmgidk 383 (695)
T KOG0353|consen 349 ANLEPEDKSGAHQGWIAG-EIQVIVATVAFGMGIDK 383 (695)
T ss_pred cccCcccccccccccccc-ceEEEEEEeeecccCCC
Confidence 753222111 11101234 44899999999999985
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-08 Score=106.18 Aligned_cols=280 Identities=14% Similarity=0.207 Sum_probs=147.1
Q ss_pred CEEEEecCHHHHHHHHHHHHHHhhhc---CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhh
Q 005155 45 GVHVVTVNDYLAQRDAEWMERVHRFL---GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLV 119 (711)
Q Consensus 45 ~VhVvT~NdyLA~RDae~~~~~y~~L---GLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v 119 (711)
...||-|+++||++-..++..|-..+ -++.-++.++.- .+-++..-+.|||+||++++ .+-+... ...
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl-----~~~is~g--~~~ 360 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRL-----LQPISKG--LVT 360 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhh-----hhhhhcc--cee
Confidence 57899999999999999988886655 233335555432 22334456789999999997 3333221 223
Q ss_pred cCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcC
Q 005155 120 MRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALE 199 (711)
Q Consensus 120 ~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~ 199 (711)
+. .+.|+++||+|-+|-.. .+ ..++++-.+++. -.-|...-++-+-..-. .+|.
T Consensus 361 lt---~crFlvlDead~lL~qg-y~---------------d~I~r~h~qip~---~tsdg~rlq~~vCsatl----h~fe 414 (725)
T KOG0349|consen 361 LT---HCRFLVLDEADLLLGQG-YD---------------DKIYRFHGQIPH---MTSDGFRLQSPVCSATL----HIFE 414 (725)
T ss_pred ee---eeEEEEecchhhhhhcc-cH---------------HHHHHHhccchh---hhcCCcccccceeeeEE----eEEE
Confidence 44 78999999999987321 11 123444444431 11010000000000000 0001
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeee
Q 005155 200 TNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQI 279 (711)
Q Consensus 200 ~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~I 279 (711)
+..+=..-..++.||. |+-..+...-+|.+ |++||+.++ +.|.+ |.|+|+.- ++. +..+.-....
T Consensus 415 Vkk~~ervmhfptwVd--LkgeD~vpetvHhv-----v~lv~p~~d-----~sw~~-lr~~i~td-~vh-~kdn~~pg~~ 479 (725)
T KOG0349|consen 415 VKKVGERVMHFPTWVD--LKGEDLVPETVHHV-----VKLVCPSVD-----GSWCD-LRQFIETD-KVH-TKDNLLPGQV 479 (725)
T ss_pred eeehhhhhccCceeEe--cccccccchhhccc-----eeecCCccC-----ccHHH-HhhhhccC-Ccc-cccccccccC
Confidence 1000000012333443 22222233333333 467887654 56765 36777621 110 0000000000
Q ss_pred eehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEE
Q 005155 280 TYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359 (711)
Q Consensus 280 s~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~ 359 (711)
| |+ .|+.+ ..|+..+. + +..|. .|+- -..+||
T Consensus 480 S------------------------------------pe-~~s~a----~kilkgEy----~-v~ai~-~h~m-dkaiif 511 (725)
T KOG0349|consen 480 S------------------------------------PE-NPSSA----TKILKGEY----G-VVAIR-RHAM-DKAIIF 511 (725)
T ss_pred C------------------------------------CC-Chhhh----hHHhcCch----h-hhhhh-hhcc-CceEEE
Confidence 0 11 11111 11222211 1 11222 2333 356899
Q ss_pred ecchhhHHHHHHHHHHCC---CCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 360 STSVENSEYLSDLLKQQG---IPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 360 t~Si~~SE~Ls~~L~~~g---i~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
|++..+++.|.+++.++| .+|.-|+++.+-+++-+++-...-..-...|+|+.|.||+||.
T Consensus 512 crtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 512 CRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred EeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 999999999999999987 4677799987777887777654333457789999999999995
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-06 Score=99.03 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=83.8
Q ss_pred hhHhhhcCccccccCCcccH--HHHHHHHcCCC------eEEeCCCCCcc---cccCCCeEE--eChhHHHHHHHHHHHH
Q 005155 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP------VIEVPTNLPNI---RVDLPIQSF--ATARGKWEYARQEVES 348 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te--~~Ef~~iY~l~------vv~IPt~~p~~---R~d~~d~i~--~t~~~K~~aIi~ei~~ 348 (711)
..+|+.+.....+|||+... -.-|.+.-|++ .+.+|+.++.. ..-.|+..+ .+.++...++++.|.+
T Consensus 450 ~~l~~~~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~ 529 (697)
T PRK11747 450 RLLWSRAPGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPE 529 (697)
T ss_pred HHHHhhCCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 45667777888888988753 24455666764 45677766541 111222111 1344556678888876
Q ss_pred hhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHH----Hh--cCCCccEEEEcCCCcCCccee
Q 005155 349 MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETV----AQ--AGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 349 ~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Ii----a~--AG~~G~VTIATnmAGRGTDIk 420 (711)
....+..+||+++|-+.-+.+++.|... ....++--+ . ..+++ ++ +. +| .+.|.++|.-..=|+|++
T Consensus 530 l~~~~gg~LVlFtSy~~l~~v~~~l~~~-~~~~ll~Q~-~-~~~~~-ll~~f~~~~~~~-~~~VL~g~~sf~EGVD~p 602 (697)
T PRK11747 530 LLEKHKGSLVLFASRRQMQKVADLLPRD-LRLMLLVQG-D-QPRQR-LLEKHKKRVDEG-EGSVLFGLQSFAEGLDLP 602 (697)
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHh-cCCcEEEeC-C-chHHH-HHHHHHHHhccC-CCeEEEEeccccccccCC
Confidence 6655545899999999999999998753 122333221 1 12332 22 21 34 678999999999999997
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-05 Score=97.49 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=71.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC------------CEEEEecCHHHHHHHHHHHHHH---hhhcCCeEEEEcCCCCH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGE------------GVHVVTVNDYLAQRDAEWMERV---HRFLGLSVGLIQRGMIP 83 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~------------~VhVvT~NdyLA~RDae~~~~~---y~~LGLtv~~i~~~~~~ 83 (711)
+....||.|||-+|+|.++ +.+.++ .+-=+.|-..|++ ||.+.| +..||++|+-.++++..
T Consensus 329 LlCAPTGaGKTNVAvLtiL-qel~~h~r~dgs~nl~~fKIVYIAPmKaLvq---E~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 329 LLCAPTGAGKTNVAVLTIL-QELGNHLREDGSVNLAPFKIVYIAPMKALVQ---EMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred EEeccCCCCchHHHHHHHH-HHHhcccccccceecccceEEEEeeHHHHHH---HHHHHHHhhccccCcEEEEecccccc
Confidence 8888999999999999995 777554 2333566678887 566655 56889999999888542
Q ss_pred HHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 84 EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 84 ~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
.+++.-...|++|||... |-+-.+=... ..++ -++.+|+||+|-
T Consensus 405 -~~~qieeTqVIV~TPEK~--DiITRk~gdr--aY~q----lvrLlIIDEIHL 448 (1674)
T KOG0951|consen 405 -GKEQIEETQVIVTTPEKW--DIITRKSGDR--AYEQ----LVRLLIIDEIHL 448 (1674)
T ss_pred -hhhhhhcceeEEeccchh--hhhhcccCch--hHHH----HHHHHhhhhhhh
Confidence 233445678999999873 4442211100 1122 356789999984
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=96.40 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=95.7
Q ss_pred chhHHHHHHHH----hCCC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 4 FDVQIIGGAVL----HDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 4 ~dvQl~g~~~L----~~G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+|=|+.++=.. .+|+ +++=.-|=|||-||+=+|+..+..|++|-|++||--||+|-++.|..=|.-++++|.
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~ 675 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIE 675 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEE
Confidence 35688877654 3555 888899999999999999988899999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 76 LIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
....=.+..+.++.- ..||++||..=|+ . +.... ++..+||||=+++
T Consensus 676 ~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-----k-------dv~Fk---dLGLlIIDEEqRF 728 (1139)
T COG1197 676 VLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-----K-------DVKFK---DLGLLIIDEEQRF 728 (1139)
T ss_pred EecccCCHHHHHHHHHHHhcCCccEEEechHhhC-----C-------CcEEe---cCCeEEEechhhc
Confidence 887655655554332 4699999986442 1 23344 7889999997775
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=84.56 Aligned_cols=134 Identities=19% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCchhHHHHHHHHh--------CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLH--------DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~--------~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.++|-|..+.-.+. .++ +..|.||.|||.+++..+. .|.. .+.+++||..|+.|-.+.+..+......
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~--~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~ 79 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL--ELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYN 79 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH--HHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh--cccc-ceeEecCHHHHHHHHHHHHHHhhhhhhh
Confidence 35566666666554 122 9999999999998885443 2333 8999999999999888887544432221
Q ss_pred eEEEE-----------cC--CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhc----chhhhhcCCCCCccEEEeechh
Q 005155 73 SVGLI-----------QR--GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAA----NSEQLVMRWPKPFHFAIVDEVD 135 (711)
Q Consensus 73 tv~~i-----------~~--~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~----~~~~~v~r~~R~~~~aIVDEvD 135 (711)
..... .. .............+|.+.|...+.-+.-...... ........ .++++|+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~vI~DEaH 156 (184)
T PF04851_consen 80 FFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN---KFDLVIIDEAH 156 (184)
T ss_dssp EEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG---SESEEEEETGG
T ss_pred hcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc---cCCEEEEehhh
Confidence 11110 11 1123333445677899999877743321110000 00111223 67899999999
Q ss_pred hhhhhc
Q 005155 136 SVLIDE 141 (711)
Q Consensus 136 s~LiDe 141 (711)
.+--+.
T Consensus 157 ~~~~~~ 162 (184)
T PF04851_consen 157 HYPSDS 162 (184)
T ss_dssp CTHHHH
T ss_pred hcCCHH
Confidence 975443
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=100.45 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=52.9
Q ss_pred HHhCCC--eEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHh-hhcC--CeEEEE
Q 005155 13 VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVH-RFLG--LSVGLI 77 (711)
Q Consensus 13 ~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y-~~LG--Ltv~~i 77 (711)
+|.+|. ++|+.||.|||+++++|+...+. .+++|.|.|||..|+.|-.+.+..+- +.+| +++.++
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~l 83 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFF 83 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 345555 89999999999999999976666 48999999999999999999888777 5554 444443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=94.46 Aligned_cols=123 Identities=22% Similarity=0.203 Sum_probs=72.4
Q ss_pred cccccCCcccHHHHHHHHcC-CCeEEeCCC-CCcccccCCCeEEeChhH-HHHHHHHHHHHhhhc-CCcEEEEecchhhH
Q 005155 291 LSGMTGTAKTEEKEFLKMFQ-MPVIEVPTN-LPNIRVDLPIQSFATARG-KWEYARQEVESMFRL-GRPVLVGSTSVENS 366 (711)
Q Consensus 291 l~GmTGTa~te~~Ef~~iY~-l~vv~IPt~-~p~~R~d~~d~i~~t~~~-K~~aIi~ei~~~~~~-grPVLV~t~Si~~S 366 (711)
+.-||+|+.. +.|.+.++ .+|+.||.- .|+...-.+.. ..+. -..+++.-|...... .-.||||.+-.++-
T Consensus 198 iIimSATld~--~rfs~~f~~apvi~i~GR~fPVei~Y~~~~---~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 198 LIIMSATLDA--ERFSAYFGNAPVIEIEGRTYPVEIRYLPEA---EADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEEecccCH--HHHHHHcCCCCEEEecCCccceEEEecCCC---CcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 4457788864 45777776 789999863 24322111111 1222 223455445444333 34699999999999
Q ss_pred HHHHHHHHHCC----CCeEEEeCCCcchHhHHHHHHhc-CCCccEEEEcCCCcCCcce
Q 005155 367 EYLSDLLKQQG----IPHNVLNARPKYAAREAETVAQA-GRKYAITISTNMAGRGTDI 419 (711)
Q Consensus 367 E~Ls~~L~~~g----i~~~vLnA~~~~~~~Ea~Iia~A-G~~G~VTIATnmAGRGTDI 419 (711)
+...+.|.+.. +...-|++.....++.+ +..-+ +.+-.|.+|||+|-=++=|
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r-vF~p~~~~~RKVVlATNIAETSLTI 329 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVR-VFEPAPGGKRKVVLATNIAETSLTI 329 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHh-hcCCCCCCcceEEEEccccccceee
Confidence 99999999832 33444677644444443 33322 2222399999999765544
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.1e-05 Score=89.32 Aligned_cols=65 Identities=28% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~ 66 (711)
.|+|-|..-+- ++.+|+ ++|+.||.|||+.+++|+...+. .|+.|.|.|.|.-|-.|..++..|+
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 57777766553 445665 99999999999999999997776 4689999999999988888887775
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-05 Score=92.97 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=82.8
Q ss_pred HHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC-CH
Q 005155 8 IIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM-IP 83 (711)
Q Consensus 8 l~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~-~~ 83 (711)
-++-++|.++-|+-..||.|||.+|+..++ +-+ .+..|.+++|+.=|-.|....+...+.. -++....+++ ++
T Consensus 69 eivq~ALgkNtii~lPTG~GKTfIAa~Vm~-nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~ 145 (746)
T KOG0354|consen 69 ELVQPALGKNTIIALPTGSGKTFIAAVIMK-NHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPR 145 (746)
T ss_pred HHhHHhhcCCeEEEeecCCCccchHHHHHH-HHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCC
Confidence 466778866779999999999999998886 444 4557999999999988877666655543 4454555553 34
Q ss_pred HHHHhccC-CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 84 EERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 84 ~~r~~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.-|...|. ++|.+.||-.+ ++.|.....+. +. .|-.+|+||||.-
T Consensus 146 ~~r~~i~~s~~vff~TpQil-----~ndL~~~~~~~-ls---~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 146 SNRGEIVASKRVFFRTPQIL-----ENDLKSGLHDE-LS---DFSLIVFDECHRT 191 (746)
T ss_pred CchhhhhcccceEEeChHhh-----hhhcccccccc-cc---eEEEEEEcccccc
Confidence 34445565 49999999877 33333221111 34 6899999999974
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=7e-06 Score=69.58 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=39.6
Q ss_pred HHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 371 DLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 371 ~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.|+..|+++..+|+++...+++..+-. +.| ...|+|||+++|+|+|++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~ 50 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLP 50 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTST
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEEeecccccccccc
Confidence 4688999999999998766666655544 555 559999999999999994
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=84.67 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCchhHHH----HHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC-----CEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQII----GGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~----g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~-----~VhVvT~NdyLA~RDae~~~~~ 66 (711)
.|||.|+. ..-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 47888877 223455665 899999999999999999654443 43 7999999999988887777665
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=84.67 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCchhHHH----HHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC-----CEEEEecCHHHHHHHHHHHHHH
Q 005155 2 RHFDVQII----GGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERV 66 (711)
Q Consensus 2 rp~dvQl~----g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~-----~VhVvT~NdyLA~RDae~~~~~ 66 (711)
.|||.|+. ..-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 47888877 223455665 899999999999999999654443 43 7999999999988887777665
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=84.26 Aligned_cols=110 Identities=25% Similarity=0.264 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCH-----HHHHHHHHHHHHHhhhcCCeEEEEc--C
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND-----YLAQRDAEWMERVHRFLGLSVGLIQ--R 79 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd-----yLA~RDae~~~~~y~~LGLtv~~i~--~ 79 (711)
|++..+.=++=-|+--.||+|||--.+=-+|.......|...+|--+ .+|+|-+++|+ --||=+||.-. .
T Consensus 363 ~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~---~~lG~~VGYsIRFE 439 (1042)
T KOG0924|consen 363 QLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG---VTLGDTVGYSIRFE 439 (1042)
T ss_pred HHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC---CccccccceEEEee
Confidence 44444433333356667999999654443443344445655555443 57889999884 23444454322 1
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
+.+. -..-|-|-|-|=| ||..+.. ..+. .+.++|+||||.
T Consensus 440 dvT~------~~T~IkymTDGiL----LrEsL~d----~~L~---kYSviImDEAHE 479 (1042)
T KOG0924|consen 440 DVTS------EDTKIKYMTDGIL----LRESLKD----RDLD---KYSVIIMDEAHE 479 (1042)
T ss_pred ecCC------CceeEEEeccchH----HHHHhhh----hhhh---heeEEEechhhh
Confidence 1111 1224889999876 6665553 2355 789999999996
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-05 Score=65.15 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 368 YLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 368 ~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+++.|.+.++++.++|+.+...+++..+..-......|.|+|+++|+|+|+.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~ 54 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLP 54 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChh
Confidence 57788889999999999976555555444443333559999999999999985
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.001 Score=79.02 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=74.2
Q ss_pred hHHHHHH----HHhCCC---eEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 6 VQIIGGA----VLHDGS---IAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 6 vQl~g~~----~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
-|+.++- ++++|+ +..|.||.|||-+|.-.++...=+| |.|..++=-..|-+|-.+.+..+.=+ |=.+..
T Consensus 169 yQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~~~~n~ 247 (875)
T COG4096 169 YQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-GTKMNK 247 (875)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-ccceee
Confidence 3554444 467888 9999999999988766665433344 68999999999999877765544322 222222
Q ss_pred EcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcC-CCCCccEEEeechhhh
Q 005155 77 IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR-WPKPFHFAIVDEVDSV 137 (711)
Q Consensus 77 i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r-~~R~~~~aIVDEvDs~ 137 (711)
+... ...-.|.|..+|--.+. ....... .-..+ .|..|+++||||+|+=
T Consensus 248 i~~~------~~~~s~~i~lsTyqt~~-----~~~~~~~-~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 248 IEDK------KGDTSSEIYLSTYQTMT-----GRIEQKE-DEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred eecc------cCCcceeEEEeehHHHH-----hhhhccc-cccccCCCCceeEEEechhhhh
Confidence 2211 11126789999976652 2222220 11111 3346999999999974
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00033 Score=81.14 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=69.9
Q ss_pred cccccCCcccHHHHHHHHcCC-CeEEeCCCCCcccccCCCeEEe---ChhHHHHHHHHHHHHhhhcCC--cEEEEecchh
Q 005155 291 LSGMTGTAKTEEKEFLKMFQM-PVIEVPTNLPNIRVDLPIQSFA---TARGKWEYARQEVESMFRLGR--PVLVGSTSVE 364 (711)
Q Consensus 291 l~GmTGTa~te~~Ef~~iY~l-~vv~IPt~~p~~R~d~~d~i~~---t~~~K~~aIi~ei~~~~~~gr--PVLV~t~Si~ 364 (711)
+.-||+|+. ++-|.+.|+- +++.||.-. +|..|+- ...+...+.+.-+...|.+-- =||||-+..+
T Consensus 198 lIimSATld--a~kfS~yF~~a~i~~i~GR~------fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 198 LIIMSATLD--AEKFSEYFNNAPILTIPGRT------FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEEEeeeec--HHHHHHHhcCCceEeecCCC------CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 445677774 4557776554 899999722 2333322 234566677777777774433 4999999999
Q ss_pred hHHHHHHHHHHC------CCCe--EEEeCCCcchHhHHHHHHhcCC--CccEEEEcCCCcC
Q 005155 365 NSEYLSDLLKQQ------GIPH--NVLNARPKYAAREAETVAQAGR--KYAITISTNMAGR 415 (711)
Q Consensus 365 ~SE~Ls~~L~~~------gi~~--~vLnA~~~~~~~Ea~Iia~AG~--~G~VTIATnmAGR 415 (711)
+.|...+.|.+. +.+. --+++.... .|..-|-.-.. .-.|.+|||+|-=
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~--e~Q~rvF~p~p~g~RKvIlsTNIAET 328 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPS--EEQSRVFDPAPPGKRKVILSTNIAET 328 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCH--HHhhccccCCCCCcceEEEEcceeee
Confidence 999999998774 2221 124554322 22222222111 3479999999964
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00091 Score=77.44 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=72.4
Q ss_pred cccccCCcccHHHHHHHHcC-CCeEEeCCCCCcccccCC-CeEEe--ChhHHHHHHHHHHHHhhhc--CCcEEEEecchh
Q 005155 291 LSGMTGTAKTEEKEFLKMFQ-MPVIEVPTNLPNIRVDLP-IQSFA--TARGKWEYARQEVESMFRL--GRPVLVGSTSVE 364 (711)
Q Consensus 291 l~GmTGTa~te~~Ef~~iY~-l~vv~IPt~~p~~R~d~~-d~i~~--t~~~K~~aIi~ei~~~~~~--grPVLV~t~Si~ 364 (711)
|.-+|+|. .++.|...|+ .+|+.||..+ .| |..|. .+.+...|.+..|...|-. +--||||-.--+
T Consensus 413 llIsSAT~--DAekFS~fFDdapIF~iPGRR------yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 413 LLISSATM--DAEKFSAFFDDAPIFRIPGRR------YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred EEeecccc--CHHHHHHhccCCcEEeccCcc------cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 34455555 4577888886 4788999743 23 33343 3677888888888888732 233999998888
Q ss_pred hHHHHHHHHHHC----C--CC---eEEEeCCCcchHhHHHHHHhcCCCc--cEEEEcCCCcCCc
Q 005155 365 NSEYLSDLLKQQ----G--IP---HNVLNARPKYAAREAETVAQAGRKY--AITISTNMAGRGT 417 (711)
Q Consensus 365 ~SE~Ls~~L~~~----g--i~---~~vLnA~~~~~~~Ea~Iia~AG~~G--~VTIATnmAGRGT 417 (711)
+-|...+.|++. | ++ .--++|+. -..+..-|-+-.-+| .|.+|||+|-=-+
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNL--PselQakIFePtP~gaRKVVLATNIAETSl 546 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANL--PSELQAKIFEPTPPGARKVVLATNIAETSL 546 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccC--ChHHHHhhcCCCCCCceeEEEeecchhhce
Confidence 777776666542 2 11 12245642 123334444555454 6999999997443
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0036 Score=74.70 Aligned_cols=97 Identities=27% Similarity=0.344 Sum_probs=75.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------C
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------R 91 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY------~ 91 (711)
+..--||+|||-+++=.+. .+| .|++|.|+.|-=.|--|-.+. |-..||.+|++..+++++.+|...+ .
T Consensus 221 Ll~GvTGSGKTEvYl~~i~-~~L~~GkqvLvLVPEI~Ltpq~~~r---f~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIA-KVLAQGKQVLVLVPEIALTPQLLAR---FKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred eEeCCCCCcHHHHHHHHHH-HHHHcCCEEEEEeccccchHHHHHH---HHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 8888999999998876665 556 799999999988887765444 5566779999999999988887543 4
Q ss_pred CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 92 CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 92 ~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
+.||.||-+-+ | .-.. ++..+||||=|.
T Consensus 297 ~~vVIGtRSAl-F-------------~Pf~---~LGLIIvDEEHD 324 (730)
T COG1198 297 ARVVIGTRSAL-F-------------LPFK---NLGLIIVDEEHD 324 (730)
T ss_pred ceEEEEechhh-c-------------Cchh---hccEEEEecccc
Confidence 68999998766 1 1133 788999999764
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.013 Score=69.37 Aligned_cols=343 Identities=20% Similarity=0.284 Sum_probs=184.1
Q ss_pred CCCchhHHHHHHHH-hC-CC--eEEecCCCcHHH-HHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 005155 1 MRHFDVQIIGGAVL-HD-GS--IAEMKTGEGKTL-VSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (711)
Q Consensus 1 ~rp~dvQl~g~~~L-~~-G~--IaEm~TGEGKTL-va~Lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~L-GL 72 (711)
||||.++=+-.++. ++ |- |.-=.-|=|||+ +.++.+|+....| .+-.|++|-.-|. .||..|-+|. +|
T Consensus 168 lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~----NW~~Ef~rf~P~l 243 (971)
T KOG0385|consen 168 LRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD----NWMNEFKRFTPSL 243 (971)
T ss_pred cchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH----HHHHHHHHhCCCc
Confidence 67887776666653 33 32 444456999999 7888899877666 3567888888887 4999999998 78
Q ss_pred eEEEEcCCCC--HHHHHhccC---CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh------hhhc
Q 005155 73 SVGLIQRGMI--PEERRSNYR---CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV------LIDE 141 (711)
Q Consensus 73 tv~~i~~~~~--~~~r~~aY~---~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~------LiDe 141 (711)
.|.+.+|+-. ...++..|. .||+.+|- |+ .|+|.-. +..- +-.|+||||+|++ |+-.
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsY-Ei---~i~dk~~-----lk~~---~W~ylvIDEaHRiKN~~s~L~~~ 311 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSY-EI---AIKDKSF-----LKKF---NWRYLVIDEAHRIKNEKSKLSKI 311 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehH-HH---HHhhHHH-----HhcC---CceEEEechhhhhcchhhHHHHH
Confidence 8888877632 222333443 48886663 32 3455211 1111 5679999999965 2221
Q ss_pred -----CCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHH
Q 005155 142 -----GRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN 216 (711)
Q Consensus 142 -----a~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~ 216 (711)
....|.|+|.+-.+ + ...+..+...+.++.+ . + .+..+..|...+..... .....+..
T Consensus 312 lr~f~~~nrLLlTGTPLQN-N-L~ELWaLLnFllPdiF-~-----------~--~e~F~swF~~~~~~~~~-e~v~~Lh~ 374 (971)
T KOG0385|consen 312 LREFKTDNRLLLTGTPLQN-N-LHELWALLNFLLPDIF-N-----------S--AEDFDSWFDFTNCEGDQ-ELVSRLHK 374 (971)
T ss_pred HHHhcccceeEeeCCcccc-c-HHHHHHHHHhhchhhc-c-----------C--HHHHHHHHcccccccCH-HHHHHHHh
Confidence 23447777754322 1 1233333343333211 0 0 11122222222111110 01111111
Q ss_pred HHHHHHH--hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeee-eehhHhhhcC----
Q 005155 217 ALKAKEF--YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQI-TYQSLFKLYP---- 289 (711)
Q Consensus 217 AL~A~~l--~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~I-s~q~~F~~Y~---- 289 (711)
.|+.-.| .+.|+. ..++...|-.....+ +.|. +-|.
T Consensus 375 vL~pFlLRR~K~dVe-----------------------------------~sLppKkE~~iyvgms~mQk--k~Y~~iL~ 417 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVE-----------------------------------KSLPPKKELIIYVGMSSMQK--KWYKAILM 417 (971)
T ss_pred hhhHHHHHHHHHhHh-----------------------------------hcCCCcceeeEeccchHHHH--HHHHHHHH
Confidence 1111010 011110 011111111111111 1110 0111
Q ss_pred -ccccccCCcccHHH-------HHHHHcCCCeE-----EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcE
Q 005155 290 -KLSGMTGTAKTEEK-------EFLKMFQMPVI-----EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPV 356 (711)
Q Consensus 290 -kl~GmTGTa~te~~-------Ef~~iY~l~vv-----~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPV 356 (711)
-|-++-|+-+.+.. .|++.-|-+.. ..||+.+ +.-..+...|+.-+=+.+...+++|..|
T Consensus 418 kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pytt-------dehLv~nSGKm~vLDkLL~~Lk~~GhRV 490 (971)
T KOG0385|consen 418 KDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTT-------DEHLVTNSGKMLVLDKLLPKLKEQGHRV 490 (971)
T ss_pred hcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCc-------chHHHhcCcceehHHHHHHHHHhCCCeE
Confidence 23333333322222 22333333321 1133222 2223455667765556677888999999
Q ss_pred EEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCC---CccEEEEcCCCcCCccee
Q 005155 357 LVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGR---KYAITISTNMAGRGTDII 420 (711)
Q Consensus 357 LV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~---~G~VTIATnmAGRGTDIk 420 (711)
|||..-...-+.|-+++--+|....-|.+...+.+|++.|-+---. .---.++|.-.|-|+...
T Consensus 491 LIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 491 LIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred EEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 9999999888999999999999999999988888888888773322 235678999999987643
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=80.95 Aligned_cols=125 Identities=22% Similarity=0.184 Sum_probs=89.3
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.|-|-.++.+|-.|. ++...||.|||.|+=.+.++.-..|.+|.-.||-..|..|-+-++..-|.-.-=-+|+.+|+
T Consensus 120 LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGD 199 (1041)
T COG4581 120 LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGD 199 (1041)
T ss_pred cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecc
Confidence 5678999999998877 99999999999999999986566888999999999999987777666555441113444444
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
.+. .-.+.+++-|- | +||.-+... .-.++ +..++|.||+|-|= |.-|
T Consensus 200 v~I-----N~~A~clvMTT-E----ILRnMlyrg--~~~~~---~i~~ViFDEvHyi~-D~eR 246 (1041)
T COG4581 200 VSI-----NPDAPCLVMTT-E----ILRNMLYRG--SESLR---DIEWVVFDEVHYIG-DRER 246 (1041)
T ss_pred eee-----CCCCceEEeeH-H----HHHHHhccC--ccccc---ccceEEEEeeeecc-cccc
Confidence 221 12344544444 4 577655544 34566 99999999999984 5533
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0067 Score=69.29 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=98.9
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV 358 (711)
.+|..|-++-++..-+|+|-|..+-|...--=.+-++=||... | |.........+..-++.+|....+++-.|||
T Consensus 377 L~feEf~~~~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLl----D-P~ievRp~~~QvdDL~~EI~~r~~~~eRvLV 451 (663)
T COG0556 377 LKFEEFEAKIPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLL----D-PEIEVRPTKGQVDDLLSEIRKRVAKNERVLV 451 (663)
T ss_pred CCHHHHHHhcCCEEEEECCCChHHHHhccCceeEEeecCCCCC----C-CceeeecCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 4566666666788889999987544433211112234476542 1 3333455566888899999999999999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH--hcCCCccEEEEcCCCcCCccee
Q 005155 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 359 ~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (711)
-|-|+..||.|.++|.+.||+...||.+-+-.+| .+||. +.| .-.|.|--|+.--|.||.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER-~eIirdLR~G-~~DvLVGINLLREGLDiP 513 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLER-VEIIRDLRLG-EFDVLVGINLLREGLDLP 513 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHH-HHHHHHHhcC-CccEEEeehhhhccCCCc
Confidence 9999999999999999999999999996433332 35554 555 558999999999999994
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=79.74 Aligned_cols=111 Identities=23% Similarity=0.253 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCeEEecCCCcHHH-H--HHHHHHHHHHcCCCEEEEecCH------HHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 7 QIIGGAVLHDGSIAEMKTGEGKTL-V--STLAAYLNALTGEGVHVVTVND------YLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTL-v--a~Lpa~l~AL~G~~VhVvT~Nd------yLA~RDae~~~~~y~~LGLtv~~i 77 (711)
|++-++-=++=-|+-=.||.|||. + |.|-.+ .-.|..+-||+.-+ .+|+|-+.+- ...+|-+||..
T Consensus 180 ~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~--~~~~~~~~IicTQPRRIsAIsvAeRVa~ER---~~~~g~~VGYq 254 (924)
T KOG0920|consen 180 TILDAIEENQVVVISGETGCGKTTQVPQFILDEA--IESGAACNIICTQPRRISAISVAERVAKER---GESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHH--HhcCCCCeEEecCCchHHHHHHHHHHHHHh---ccccCCeeeEE
Confidence 344444333444667789999995 3 333222 23456666766554 5888888775 67788888876
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..-. ++.....-++|+|.|-| || .+.. +.+.. +...+||||||-=
T Consensus 255 vrl~----~~~s~~t~L~fcTtGvL----Lr-~L~~---~~~l~---~vthiivDEVHER 299 (924)
T KOG0920|consen 255 VRLE----SKRSRETRLLFCTTGVL----LR-RLQS---DPTLS---GVTHIIVDEVHER 299 (924)
T ss_pred Eeee----cccCCceeEEEecHHHH----HH-Hhcc---Ccccc---cCceeeeeeEEEc
Confidence 5432 22344467999999876 33 3332 23455 7889999999964
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00025 Score=84.12 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=66.5
Q ss_pred CeEEecCCCcHHHHHHHHHHH--HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--hccCCC
Q 005155 18 SIAEMKTGEGKTLVSTLAAYL--NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR--SNYRCD 93 (711)
Q Consensus 18 ~IaEm~TGEGKTLva~Lpa~l--~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~--~aY~~D 93 (711)
-+..|.||+|||++++..+.. ..+.+..|.|||+...|..|-.+.+..+.. -.+..+ +....-++ ....++
T Consensus 266 gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~---~~~~~~--~s~~~L~~~l~~~~~~ 340 (667)
T TIGR00348 266 GLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK---DCAERI--ESIAELKRLLEKDDGG 340 (667)
T ss_pred eEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC---CCCccc--CCHHHHHHHHhCCCCC
Confidence 499999999999988777652 234567899999999999998887776532 111111 11111222 123478
Q ss_pred eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|+++|..-|.- .+.+.+. .... .+...++||||||+.
T Consensus 341 iivtTiQk~~~-~~~~~~~----~~~~--~~~~~lvIvDEaHrs 377 (667)
T TIGR00348 341 IIITTIQKFDK-KLKEEEE----KFPV--DRKEVVVIFDEAHRS 377 (667)
T ss_pred EEEEEhHHhhh-hHhhhhh----ccCC--CCCCEEEEEEcCccc
Confidence 99999887731 1111111 0001 113348999999974
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00039 Score=81.21 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=82.2
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCC-EEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEG-VHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~-VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~ 81 (711)
|-|-.++.++-+|. ++-+.|-.|||.+|--+++ .+|..++ |.--+|=..|+.|-+.++..=|.-.||=+|-++-+
T Consensus 132 pFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTIn- 209 (1041)
T KOG0948|consen 132 PFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTIN- 209 (1041)
T ss_pred chHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeC-
Confidence 45888888888777 9999999999999999887 7887764 55566778999988877776666666655533211
Q ss_pred CHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 82 IPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 82 ~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
| .|.-.+-|- ..||.-+..+ .-++| ...++|.||+|-|- |.
T Consensus 210 -P-------~ASCLVMTT-----EILRsMLYRG--SEvmr---EVaWVIFDEIHYMR-Dk 250 (1041)
T KOG0948|consen 210 -P-------DASCLVMTT-----EILRSMLYRG--SEVMR---EVAWVIFDEIHYMR-DK 250 (1041)
T ss_pred -C-------CCceeeeHH-----HHHHHHHhcc--chHhh---eeeeEEeeeehhcc-cc
Confidence 1 111222232 2467766654 34677 99999999999995 54
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0039 Score=73.65 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred EeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHH-HCCCCeEEEeCCCcchHhHHHHHH-hcCCCccE-EE
Q 005155 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK-QQGIPHNVLNARPKYAAREAETVA-QAGRKYAI-TI 408 (711)
Q Consensus 332 ~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~-~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~V-TI 408 (711)
......|...+...+...+++|..||+|+.|...-..|-..|. ..|+.+--+.+...-..|-.-|-. +++..-.| .+
T Consensus 525 ~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLL 604 (923)
T KOG0387|consen 525 DPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLL 604 (923)
T ss_pred ChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEE
Confidence 3445678888888999999999999999999999999999999 689999889886444444433333 55555544 56
Q ss_pred EcCCCcCCcce
Q 005155 409 STNMAGRGTDI 419 (711)
Q Consensus 409 ATnmAGRGTDI 419 (711)
.|..-|-|+..
T Consensus 605 TTrvGGLGlNL 615 (923)
T KOG0387|consen 605 TTRVGGLGLNL 615 (923)
T ss_pred Eeccccccccc
Confidence 77888888765
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=77.90 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=90.1
Q ss_pred CCchhHHHHHH--HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGA--VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~--~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.+|+.|..+.- .+++|+ |--..|+-|||||+.+......| .++.|..+-|=-.-++--.+.|.+|..-+|+.|-.
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 35777876654 344544 88999999999999999887776 56777777777777777788899999999999988
Q ss_pred EcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 77 IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 77 i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
-.|..+|+-+++.- +|.++|...- .-|-+.+-.. --.. .+..++|||.|-+ +|..|
T Consensus 303 y~g~~~p~~~~k~~--sv~i~tiEka--nslin~lie~---g~~~---~~g~vvVdElhmi-~d~~r 358 (1008)
T KOG0950|consen 303 YAGRFPPEKRRKRE--SVAIATIEKA--NSLINSLIEQ---GRLD---FLGMVVVDELHMI-GDKGR 358 (1008)
T ss_pred hcccCCCCCcccce--eeeeeehHhh--HhHHHHHHhc---CCcc---ccCcEEEeeeeee-ecccc
Confidence 88877776554432 4777775321 1122222111 0111 5678999998765 57643
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0038 Score=60.75 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCC
Q 005155 16 DGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRC 92 (711)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~ 92 (711)
+|. +..+.+|.|||--.+--.+-.++ .+..|.|+.|++-+|+ +|.+-.+-++ +.+...-... ..+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~----em~~aL~~~~--~~~~t~~~~~----~~~g~ 72 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAE----EMYEALKGLP--VRFHTNARMR----THFGS 72 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHH----HHHHHTTTSS--EEEESTTSS--------SS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHH----HHHHHHhcCC--cccCceeeec----cccCC
Confidence 455 78889999999743333333455 5779999999999987 5555555444 4333222111 23443
Q ss_pred -CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 93 -DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 93 -DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
-|++-|-+-| ..|+.+ + .-.+ +++|+|+||+|..
T Consensus 73 ~~i~vMc~at~-~~~~~~-----p--~~~~---~yd~II~DEcH~~ 107 (148)
T PF07652_consen 73 SIIDVMCHATY-GHFLLN-----P--CRLK---NYDVIIMDECHFT 107 (148)
T ss_dssp SSEEEEEHHHH-HHHHHT-----S--SCTT---S-SEEEECTTT--
T ss_pred CcccccccHHH-HHHhcC-----c--cccc---CccEEEEeccccC
Confidence 4555555544 223322 1 1123 8999999999984
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.14 Score=58.45 Aligned_cols=321 Identities=15% Similarity=0.176 Sum_probs=168.9
Q ss_pred chhHHHHHH-HHhC-CC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE--EEEc
Q 005155 4 FDVQIIGGA-VLHD-GS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV--GLIQ 78 (711)
Q Consensus 4 ~dvQl~g~~-~L~~-G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv--~~i~ 78 (711)
+|-|.-|.. +|.. |+ +.-=.-|=|||+-|...|++ --......||+|..-+ ..|-..+-+||+.-. -++.
T Consensus 200 lPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~y-yraEwplliVcPAsvr----ftWa~al~r~lps~~pi~vv~ 274 (689)
T KOG1000|consen 200 LPFQREGVIFALERGGRILLADEMGLGKTIQALAIARY-YRAEWPLLIVCPASVR----FTWAKALNRFLPSIHPIFVVD 274 (689)
T ss_pred CchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHH-HhhcCcEEEEecHHHh----HHHHHHHHHhcccccceEEEe
Confidence 567888877 4443 66 44445699999966555553 3456679999996544 468888889988543 3444
Q ss_pred CCCCHHHHHhccCC---CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc--------------
Q 005155 79 RGMIPEERRSNYRC---DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE-------------- 141 (711)
Q Consensus 79 ~~~~~~~r~~aY~~---DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe-------------- 141 (711)
.+.++ ..|-| -|.+.+ ++.|... .+.+..+ .+.++|+||.|-. =|.
T Consensus 275 ~~~D~----~~~~~t~~~v~ivS-----ye~ls~l----~~~l~~~---~~~vvI~DEsH~L-k~sktkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 275 KSSDP----LPDVCTSNTVAIVS-----YEQLSLL----HDILKKE---KYRVVIFDESHML-KDSKTKRTKAATDLLKV 337 (689)
T ss_pred cccCC----ccccccCCeEEEEE-----HHHHHHH----HHHHhcc---cceEEEEechhhh-hccchhhhhhhhhHHHH
Confidence 44332 23333 233332 3333211 0112223 7999999999853 232
Q ss_pred CCCceeccCCC--CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCC---CC--chHHHH
Q 005155 142 GRNPLLISGEA--SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE---ND--PWARFV 214 (711)
Q Consensus 142 a~tPLiiSg~~--~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~---~~--~~~~~i 214 (711)
+.+-+.+||.+ +.++.+|.++..+-..|-++ . -|-|+..++--. ..-.|+. +| .+.-.+
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~-f------------~efa~rYCd~k~-vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPN-F------------HEFAIRYCDGKQ-VRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhccccccc-H------------HHHHHHhcCccc-cceeeecCCCCCHHHHHHHH
Confidence 33336689875 45677888876655444321 1 111222221000 0001111 12 122222
Q ss_pred HHHHHHHHHhccCcceEEe---CCeEEEEeCCCCccccccccChhhhHHHHh-Hh--CCccccCceeeeeeeehhHhhhc
Q 005155 215 MNALKAKEFYRRDVQYIVR---NGKALIINELTGRVEEKRRWSEGIHQAVEA-KE--GLKIQADSVVVAQITYQSLFKLY 288 (711)
Q Consensus 215 ~~AL~A~~l~~~d~dYiV~---d~~IviVD~~TGR~~~gr~ws~GLHQaiEa-KE--gv~I~~es~t~a~Is~q~~F~~Y 288 (711)
..++.-+.+ + +-+.. ..+-.+|-..+||+-.-+. .++.+ +. .++.+..+
T Consensus 404 ~k~lMIRRl-K---~dvL~qLPpKrr~Vv~~~~gr~da~~~------~lv~~a~~~t~~~~~e~~--------------- 458 (689)
T KOG1000|consen 404 FKRLMIRRL-K---ADVLKQLPPKRREVVYVSGGRIDARMD------DLVKAAADYTKVNSMERK--------------- 458 (689)
T ss_pred HHHHHHHHH-H---HHHHhhCCccceEEEEEcCCccchHHH------HHHHHhhhcchhhhhhhh---------------
Confidence 333222222 1 11111 1122233344566654332 11111 11 11110000
Q ss_pred CccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHH----hhhcCCcEEEEecchh
Q 005155 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVES----MFRLGRPVLVGSTSVE 364 (711)
Q Consensus 289 ~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~----~~~~grPVLV~t~Si~ 364 (711)
.+-+.-.|+ .+...|..++++.|.. .-+.++.+|||+.-..
T Consensus 459 -------------~~~l~l~y~----------------------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 459 -------------HESLLLFYS----------------------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred -------------hHHHHHHHH----------------------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 011122232 2234577788888877 4578899999999999
Q ss_pred hHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCC-CccEEEE---cCCCcCCcceecC
Q 005155 365 NSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGR-KYAITIS---TNMAGRGTDIILG 422 (711)
Q Consensus 365 ~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~-~G~VTIA---TnmAGRGTDIkLg 422 (711)
--+.|...+.++++++--+++....++|+.-... .| .-.|-|| ---||=|.|+.-+
T Consensus 504 vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qs--FQ~seev~VAvlsItA~gvGLt~tAa 563 (689)
T KOG1000|consen 504 VLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQS--FQTSEEVRVAVLSITAAGVGLTLTAA 563 (689)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHH--hccccceEEEEEEEeecccceeeecc
Confidence 9999999999999999999997656666654433 22 2233333 3456777777644
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.58 Score=56.36 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-HHhhhcCC--cEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCc-cEEEEcC
Q 005155 337 GKWEYARQEV-ESMFRLGR--PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY-AITISTN 411 (711)
Q Consensus 337 ~K~~aIi~ei-~~~~~~gr--PVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G-~VTIATn 411 (711)
.|...+.+.+ ......|. +||||+.....-+.+...|...++++.-+++......+...|.. .++..- ...++|-
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5777776666 56778898 99999999999999999999999888899986443344433333 555222 3333333
Q ss_pred CCcCC
Q 005155 412 MAGRG 416 (711)
Q Consensus 412 mAGRG 416 (711)
-+|-|
T Consensus 772 agg~g 776 (866)
T COG0553 772 AGGLG 776 (866)
T ss_pred ccccc
Confidence 44433
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.013 Score=60.99 Aligned_cols=108 Identities=21% Similarity=0.310 Sum_probs=58.9
Q ss_pred CCeEEecCCCcHHHHHHHHHH-HHHHcCC----CEEEEecCHHHHHHHHHHHHHHhhhc---CCeEEEEcCCCCHHHHH-
Q 005155 17 GSIAEMKTGEGKTLVSTLAAY-LNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFL---GLSVGLIQRGMIPEERR- 87 (711)
Q Consensus 17 G~IaEm~TGEGKTLva~Lpa~-l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~L---GLtv~~i~~~~~~~~r~- 87 (711)
|-|.--.+|.|||++++..+. +...... .+.||+|+.-+. .|...+.+++ .+.+....+.. ...+.
T Consensus 27 g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~----~W~~E~~~~~~~~~~~v~~~~~~~-~~~~~~ 101 (299)
T PF00176_consen 27 GGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLS----QWKEEIEKWFDPDSLRVIIYDGDS-ERRRLS 101 (299)
T ss_dssp EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHH----HHHHHHHHHSGT-TS-EEEESSSC-HHHHTT
T ss_pred CEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhh----hhhhhhcccccccccccccccccc-cccccc
Confidence 447777899999987665553 3332222 499999995553 3666676666 56666665553 11111
Q ss_pred --hccCCCeEEECCCchhhHHHHHh-hhcchhhhhcCCCCCccEEEeechhhh
Q 005155 88 --SNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 88 --~aY~~DI~YgT~~elgfDyLrD~-l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..-..+|+..|-..+ +.. .....+..... +++++||||+|.+
T Consensus 102 ~~~~~~~~vvi~ty~~~-----~~~~~~~~~~~l~~~---~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETL-----RKARKKKDKEDLKQI---KWDRVIVDEAHRL 146 (299)
T ss_dssp SSSCCCSSEEEEEHHHH-----H--TSTHTTHHHHTS---EEEEEEETTGGGG
T ss_pred ccccccceeeecccccc-----ccccccccccccccc---cceeEEEeccccc
Confidence 123357888885443 300 00111122223 6899999999997
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.25 Score=59.52 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHHhhhcCCc---EEEEecchhhHHHHHHHHHHCCCCeEEEeCC
Q 005155 334 TARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (711)
Q Consensus 334 t~~~K~~aIi~ei~~~~~~grP---VLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~ 386 (711)
+..+.-..|+++|.+.+..|.+ +.|.+++-..+..+.+.|.+.|||+.+..+.
T Consensus 325 ~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~~ 380 (721)
T PRK11773 325 NELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGM 380 (721)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccEEEEEecchhHHHHHHHHHHCCCCEEEECCC
Confidence 3444556788999888777743 8888999999999999999999999988664
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.029 Score=66.81 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=71.2
Q ss_pred CCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEEcCCCCHHHHHhccC------CCeE
Q 005155 24 TGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLIQRGMIPEERRSNYR------CDIT 95 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Ltv~~i~~~~~~~~r~~aY~------~DI~ 95 (711)
+|+|||-+++=.+. .+| .|++|.|+.|.-.|..|-.+.+. ..|| -.|+...+++++.+|...|. ++|+
T Consensus 169 ~GSGKTevyl~~i~-~~l~~Gk~vLvLvPEi~lt~q~~~rl~---~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 169 PGEDWARRLAAAAA-ATLRAGRGALVVVPDQRDVDRLEAALR---ALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred CCCcHHHHHHHHHH-HHHHcCCeEEEEecchhhHHHHHHHHH---HHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 69999999877765 455 69999999999999997666555 5556 78999999999999887763 5899
Q ss_pred EECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 96 YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
+||=+-+ | .-.. ++..+||||=|.
T Consensus 245 iGtRSAv-F-------------aP~~---~LgLIIvdEEhd 268 (665)
T PRK14873 245 VGTRSAV-F-------------APVE---DLGLVAIWDDGD 268 (665)
T ss_pred EEcceeE-E-------------eccC---CCCEEEEEcCCc
Confidence 9997765 1 1123 678888887654
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.38 Score=59.89 Aligned_cols=335 Identities=19% Similarity=0.282 Sum_probs=171.6
Q ss_pred eEEecCCCcHHH-HHHHHHH-HHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeE
Q 005155 19 IAEMKTGEGKTL-VSTLAAY-LNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDIT 95 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~-l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~ 95 (711)
|.-=.-|=|||+ +.++..| .+.+. -.+..||+|=.+++. |-+.|-.+..+.+.+..|+....+-...|. .+
T Consensus 393 ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~----W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye--~~ 466 (1373)
T KOG0384|consen 393 ILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA----WEREFETWTDMNVIVYHGNLESRQLIRQYE--FY 466 (1373)
T ss_pred eehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH----HHHHHHHHhhhceeeeecchhHHHHHHHHH--he
Confidence 554556999998 4444444 34442 235778888777764 999999999999999888876544444454 34
Q ss_pred EECC-CchhhHHHHHhhhcc-hhhhhcCCCCCccEEEeechhhhhhhc-----------CCCceeccCCCCCCccchHHH
Q 005155 96 YTNN-SELGFDYLRDNLAAN-SEQLVMRWPKPFHFAIVDEVDSVLIDE-----------GRNPLLISGEASKDVARYPVA 162 (711)
Q Consensus 96 YgT~-~elgfDyLrD~l~~~-~~~~v~r~~R~~~~aIVDEvDs~LiDe-----------a~tPLiiSg~~~~~~~~y~~~ 162 (711)
+..+ +.+.|+-|..-+..- ++..+++ .=+..|++|||||+.=-++ -.+-|.|+|.+-.++ ...+
T Consensus 467 ~~~~~~~lkf~~lltTye~~LkDk~~L~-~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNs--ikEL 543 (1373)
T KOG0384|consen 467 HSSNTKKLKFNALLTTYEIVLKDKAELS-KIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNS--LKEL 543 (1373)
T ss_pred ecCCccccccceeehhhHHHhccHhhhc-cCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCcccc--HHHH
Confidence 4442 344455443222111 0112332 1156799999999864333 234466777543321 1223
Q ss_pred HHHHHHcccCCCeEEeCC--CCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEE
Q 005155 163 AKVAELLVQGLHYTVELK--NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (711)
Q Consensus 163 ~~i~~~l~~~~~y~~d~~--~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviV 240 (711)
..++..+.++.+...++= +. -.-|+.|+..+...|. .++. +. +++|+.
T Consensus 544 ~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~------------P~~l-----Rr-~kkdve----------- 593 (1373)
T KOG0384|consen 544 WSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILK------------PFLL-----RR-LKKDVE----------- 593 (1373)
T ss_pred HHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhh------------HHHH-----HH-HHhhhc-----------
Confidence 333333433321111100 00 0123333333322211 1111 11 122321
Q ss_pred eCCCCccccccccChhhhHHHHhHhCCccccCceeeeeee-ehh-Hh-----hhcCcc-ccccCCccc---HHHHHHHHc
Q 005155 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQIT-YQS-LF-----KLYPKL-SGMTGTAKT---EEKEFLKMF 309 (711)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is-~q~-~F-----~~Y~kl-~GmTGTa~t---e~~Ef~~iY 309 (711)
..++..+|+..-..+| .|. |+ |.|.-| -|..|+.-+ -.-||.+--
T Consensus 594 ------------------------kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKcc 649 (1373)
T KOG0384|consen 594 ------------------------KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCC 649 (1373)
T ss_pred ------------------------cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhc
Confidence 1122222221111111 121 11 223222 233344322 345666666
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHH----------HHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQ----------EVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~----------ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~ 379 (711)
|-++..=|.- .....+..+ ...+..+.++|. .+-+..+.|-.||||..-+..-+.|+++|..+|+|
T Consensus 650 NHpyLi~gae-e~~~~~~~~---~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~yp 725 (1373)
T KOG0384|consen 650 NHPYLIKGAE-EKILGDFRD---KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYP 725 (1373)
T ss_pred CCccccCcHH-HHHHHhhhh---cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCc
Confidence 6555432221 111111111 002334444432 23344578899999999999999999999999999
Q ss_pred eEEEeCCCcchHhHHHHHH-hc--CCCccEEEEcCCCcCCccee
Q 005155 380 HNVLNARPKYAAREAETVA-QA--GRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 380 ~~vLnA~~~~~~~Ea~Iia-~A--G~~G~VTIATnmAGRGTDIk 420 (711)
++-|.+..+-.-|-+.|-. .| -.--.-+++|.--|-|+...
T Consensus 726 fQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 726 FQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred ceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 9999997655556666654 22 11225789999999997643
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.25 Score=51.69 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=80.5
Q ss_pred hhHHHHHHHHhC-----CCeEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEE
Q 005155 5 DVQIIGGAVLHD-----GSIAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLI 77 (711)
Q Consensus 5 dvQl~g~~~L~~-----G~IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y-~~LGLtv~~i 77 (711)
++|.--+..|.+ +.+.||.+|||||-|. +|++..+| .|...-.+.+=.-|.++-++-+..-+ ..+|=.+-.+
T Consensus 26 ~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~l 104 (229)
T PF12340_consen 26 PVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHL 104 (229)
T ss_pred HHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 456655555543 4599999999999764 34444455 56565556666778888877765443 4556666554
Q ss_pred cC----CCCHHH----HH---hc-cCCCeEEECCCchh------hHHHHHhhhcchh-----hhhcCCCCCccEEEeech
Q 005155 78 QR----GMIPEE----RR---SN-YRCDITYTNNSELG------FDYLRDNLAANSE-----QLVMRWPKPFHFAIVDEV 134 (711)
Q Consensus 78 ~~----~~~~~~----r~---~a-Y~~DI~YgT~~elg------fDyLrD~l~~~~~-----~~v~r~~R~~~~aIVDEv 134 (711)
.= ..+++. ++ .+ -...|+.+||..+- .+.+.|.-..... ...+. ....-|+||.
T Consensus 105 pFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~---~~~rdilDEs 181 (229)
T PF12340_consen 105 PFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD---EHSRDILDES 181 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---hcCCeEeECc
Confidence 32 122221 11 01 13489999998762 2222111100000 11112 3344799999
Q ss_pred hhhhhhcCCCceeccCC
Q 005155 135 DSVLIDEGRNPLLISGE 151 (711)
Q Consensus 135 Ds~LiDea~tPLiiSg~ 151 (711)
|.+|- .++-||.+..
T Consensus 182 De~L~--~k~qLiY~~G 196 (229)
T PF12340_consen 182 DEILS--VKYQLIYTMG 196 (229)
T ss_pred hhccC--cceEEEecCC
Confidence 99984 7888988643
|
There are two conserved sequence motifs: LLE and NMG. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.2 Score=50.15 Aligned_cols=104 Identities=24% Similarity=0.208 Sum_probs=67.6
Q ss_pred chhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~--G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
-|-|.-++-. ..|. ++-..-|+|||-|.+--+. +-+. | ..+.++|.|.-.|.--.+.+ .+.+|-.
T Consensus 6 n~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl---~~~~~~~---- 76 (715)
T TIGR01075 6 NDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIA-WLLSVENASPHSIMAVTFTNKAAAEMRHRI---GALLGTS---- 76 (715)
T ss_pred CHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHcCCCCHHHeEeeeccHHHHHHHHHHH---HHHhccc----
Confidence 3556655432 3466 8888999999987665554 2232 3 47899999999887444433 3444421
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..++.++|...|++..||.+... ... +.+|-|+|+.|..
T Consensus 77 -------------~~~~~i~TfHs~~~~iLr~~~~~----~g~----~~~f~i~d~~d~~ 115 (715)
T TIGR01075 77 -------------ARGMWIGTFHGLAHRLLRAHHLD----AGL----PQDFQILDSDDQL 115 (715)
T ss_pred -------------ccCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCeecCHHHHH
Confidence 12578899999999999875321 111 3457789998864
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.55 Score=57.32 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=88.7
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
.-|-.++.+|..|. .+-+.|-.|||+||=-++++.--.|.+..--+|=..|..|-+-+|+.-|.--| +++|+..
T Consensus 300 ~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvq 375 (1248)
T KOG0947|consen 300 TFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQ 375 (1248)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc----eeeccee
Confidence 46999999999998 88899999999999888887666777777788888999998888888887666 4555521
Q ss_pred HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 83 PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 83 ~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
..=.|.+++-|- ..||..+..+ .-+.| .+.|+|.||||-| -|.-|
T Consensus 376 -----inPeAsCLIMTT-----EILRsMLYrg--adliR---DvE~VIFDEVHYi-ND~eR 420 (1248)
T KOG0947|consen 376 -----INPEASCLIMTT-----EILRSMLYRG--ADLIR---DVEFVIFDEVHYI-NDVER 420 (1248)
T ss_pred -----eCCCcceEeehH-----HHHHHHHhcc--cchhh---ccceEEEeeeeec-ccccc
Confidence 112344666664 2467666554 23567 9999999999987 35544
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.4 Score=51.24 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=67.2
Q ss_pred chhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~--G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
-|-|.-++-. .+|. ++-..-|+|||-|.+--+. +.+. | ..+.++|.|.--|..-.+.+. +.+|-.
T Consensus 6 n~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria-~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~---~~~~~~---- 76 (726)
T TIGR01073 6 NPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIA-HLIAEKNVAPWNILAITFTNKAAREMKERVE---KLLGPV---- 76 (726)
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHH-HHHHcCCCCHHHeeeeeccHHHHHHHHHHHH---HHhccc----
Confidence 4567666543 3566 8889999999988776654 2232 2 469999999877764333333 333310
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..++.++|...|+...||..... ... +.+|-|+|+.|..
T Consensus 77 -------------~~~~~i~TFHs~~~~iLr~~~~~------~g~--~~~f~i~d~~~~~ 115 (726)
T TIGR01073 77 -------------AEDIWISTFHSMCVRILRRDIDR------IGI--NRNFSIIDPTDQL 115 (726)
T ss_pred -------------cCCcEEEcHHHHHHHHHHHHHHH------hCC--CCCCCcCCHHHHH
Confidence 13588999999999999875321 111 3456789998853
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=93.96 E-value=2.5 Score=51.43 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=53.5
Q ss_pred HHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 346 VESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 346 i~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
+......|.-|-||++|+..++.+++.....+-..-++|++.+.. ++ +-...-+|.|=|-.-.=|.++.
T Consensus 275 L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~----dv--~~W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE----DV--ESWKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc----cc--ccccceeEEEEeceEEEEeccc
Confidence 333446889999999999999999999988877777888853322 33 2355778999999999999874
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.14 Score=61.06 Aligned_cols=130 Identities=27% Similarity=0.435 Sum_probs=84.7
Q ss_pred hhHHHHHHH---Hh----CCCeEEecCCCcHHH-HHHHHHHHHHHcCCCEE-EEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 5 DVQIIGGAV---LH----DGSIAEMKTGEGKTL-VSTLAAYLNALTGEGVH-VVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 5 dvQl~g~~~---L~----~G~IaEm~TGEGKTL-va~Lpa~l~AL~G~~Vh-VvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
|-|++|+=- |+ +| |.-=.-|=|||. |.++.+||.-..-.|-| ||+|+.-|- .|.+.|-+|. .|+|
T Consensus 402 dYQlvGvNWL~Llyk~~l~g-ILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle----NWlrEf~kwCPsl~V 476 (941)
T KOG0389|consen 402 DYQLVGVNWLLLLYKKKLNG-ILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE----NWLREFAKWCPSLKV 476 (941)
T ss_pred chhhhhHHHHHHHHHccccc-eehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH----HHHHHHHHhCCceEE
Confidence 558888753 33 34 444456999998 77888887766555655 678888776 5999999999 5788
Q ss_pred EEEcCCCCHHHHHhc--------cCCCeEEECCCchhhHHHHHhhhcchhh-hhcCCCCCccEEEeechhhhhhhc----
Q 005155 75 GLIQRGMIPEERRSN--------YRCDITYTNNSELGFDYLRDNLAANSEQ-LVMRWPKPFHFAIVDEVDSVLIDE---- 141 (711)
Q Consensus 75 ~~i~~~~~~~~r~~a--------Y~~DI~YgT~~elgfDyLrD~l~~~~~~-~v~r~~R~~~~aIVDEvDs~LiDe---- 141 (711)
-..+|.. ++|++. -.-||+..|=.=+ ..++++ .++| ..+|+|+|.||.|-. =+.
T Consensus 477 e~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la---------~~~kdDRsflk-~~~~n~viyDEgHmL-KN~~SeR 543 (941)
T KOG0389|consen 477 EPYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLA---------ASSKDDRSFLK-NQKFNYVIYDEGHML-KNRTSER 543 (941)
T ss_pred EeccCcH--HHHHHHHHHHhccCCCccEEEEEeecc---------cCChHHHHHHH-hccccEEEecchhhh-hccchHH
Confidence 7777664 333321 1347887774322 122333 2443 337999999999842 222
Q ss_pred --------CCCceeccCCC
Q 005155 142 --------GRNPLLISGEA 152 (711)
Q Consensus 142 --------a~tPLiiSg~~ 152 (711)
|+.-|.++|.+
T Consensus 544 y~~LM~I~An~RlLLTGTP 562 (941)
T KOG0389|consen 544 YKHLMSINANFRLLLTGTP 562 (941)
T ss_pred HHHhccccccceEEeeCCc
Confidence 56667788854
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.5 Score=48.62 Aligned_cols=108 Identities=27% Similarity=0.313 Sum_probs=69.8
Q ss_pred CCCchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHH--cC---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL--TG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL--~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
|+.-+-|.-++-. ..|. ++-..-|+|||.|.+--+. +-+ .| ..+.++|.|+--|.--.+ .+-..+|-..
T Consensus 1 ~~Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria-~Li~~~~v~p~~IL~lTFT~kAA~em~~---Rl~~~l~~~~ 75 (672)
T PRK10919 1 MRLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIA-HLIRGCGYQARHIAAVTFTNKAAREMKE---RVAQTLGRKE 75 (672)
T ss_pred CCCCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcCCCHHHeeeEechHHHHHHHHH---HHHHHhCccc
Confidence 4566778776543 2566 7888999999987666554 223 23 469999999998873333 3334444210
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...|.++|...|.+..|+..... .-. +.+|-|+|+.|..
T Consensus 76 ----------------~~~v~i~TfHS~~~~iLr~~~~~----~g~----~~~~~i~d~~~~~ 114 (672)
T PRK10919 76 ----------------ARGLMISTFHTLGLDIIKREYAA----LGM----KSNFSLFDDTDQL 114 (672)
T ss_pred ----------------ccCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCeeCCHHHHH
Confidence 12488899999999999874321 111 2357789988763
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.25 Score=54.25 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=35.6
Q ss_pred EEecCCCcHHHHHHHHHHHH--HHcCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 20 AEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~--AL~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
++=.-|+|||+++.-.+... .-.+..+.++|+|.-|..--.+.+..-+
T Consensus 6 I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~ 55 (352)
T PF09848_consen 6 ITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY 55 (352)
T ss_pred EEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc
Confidence 44457999999887766643 4578899999999999886666655444
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.13 Score=47.16 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=25.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
++-=.+|.|||.++---+.-... ......++..+---...-......+.+.+|..
T Consensus 8 ~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 65 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP 65 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S
T ss_pred EEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc
Confidence 45567999999754443331111 11134443322221112234466777777755
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.4 Score=47.07 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=40.1
Q ss_pred hHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHH-------------HHHHHHHHHHHHhhh
Q 005155 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDY-------------LAQRDAEWMERVHRF 69 (711)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~Ndy-------------LA~RDae~~~~~y~~ 69 (711)
.|....-+|.++. ++.=.+|+|||+.+...++ .+| .+.---|+-++.. +.+--.-||.|+|+.
T Consensus 63 ~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~-~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~ 141 (262)
T PRK10536 63 AQAHYLKAIESKQLIFATGEAGCGKTWISAAKAA-EALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDV 141 (262)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH-HHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHH
Confidence 3444444566666 5566899999987766664 455 4432223333333 345556788888887
Q ss_pred cCC
Q 005155 70 LGL 72 (711)
Q Consensus 70 LGL 72 (711)
|.-
T Consensus 142 L~~ 144 (262)
T PRK10536 142 LVR 144 (262)
T ss_pred HHH
Confidence 743
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.36 Score=54.25 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=38.2
Q ss_pred EEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 20 AEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.-=.||.|||.+++=.|....+ .|+.|+++|.+.|=+. -.+++..+.+.+|+.+.+
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a-a~eQL~~~a~~lgvpv~~ 238 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG-AKKQIQTYGDIMGIPVKA 238 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH-HHHHHHHHhhcCCcceEe
Confidence 3447999999875544432333 4789999999998333 345577777778887653
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.12 Score=64.33 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=78.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHH-HHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE-WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYT 97 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae-~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~Yg 97 (711)
++-..||+|||.+|=++.. +--.-..++=++|+...|..-+. |-+.|-..+|+.+.-..|.. ....+..-..+|.++
T Consensus 1163 ~vga~~gsgkt~~ae~a~l-~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~-s~~lkl~~~~~vii~ 1240 (1674)
T KOG0951|consen 1163 LVGAPNGSGKTACAELALL-RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET-SLDLKLLQKGQVIIS 1240 (1674)
T ss_pred EEecCCCCchhHHHHHHhc-CCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc-ccchHHhhhcceEEe
Confidence 8889999999999887764 42233368889999999987765 67788888999988776654 345666777899999
Q ss_pred CCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 98 T~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
||.. ||.|+ -+| ..++-|+||.|-+
T Consensus 1241 tpe~--~d~lq---------~iQ----~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1241 TPEQ--WDLLQ---------SIQ----QVDLFIVDELHLI 1265 (1674)
T ss_pred chhH--HHHHh---------hhh----hcceEeeehhhhh
Confidence 9987 56663 234 6889999999875
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.46 Score=58.75 Aligned_cols=37 Identities=32% Similarity=0.305 Sum_probs=25.9
Q ss_pred eEEecCCCcHHHHHHHHHH-HHHHcCCC-EEEEecCHHH
Q 005155 19 IAEMKTGEGKTLVSTLAAY-LNALTGEG-VHVVTVNDYL 55 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~-l~AL~G~~-VhVvT~NdyL 55 (711)
..+|.||+|||.|++-.++ |+...|.. +.|++|+...
T Consensus 63 ~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI 101 (986)
T PRK15483 63 DIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAI 101 (986)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 6899999999998765544 45555654 5666666443
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.11 Score=59.23 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=74.7
Q ss_pred hHHHHHHHHh-CCC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 6 VQIIGGAVLH-DGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 6 vQl~g~~~L~-~G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
-|-.+.--|+ +|+ |+-..-|.|||||-+-++. --.+.|.|++.|..=.. +|-.+|..|-.+.-..+..=
T Consensus 306 YQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---tikK~clvLcts~VSVe---QWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 306 YQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---TIKKSCLVLCTSAVSVE---QWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred hHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---eecccEEEEecCccCHH---HHHHHHHhhcccCccceEEe
Confidence 3666666555 566 8899999999998655543 34678999998876665 47777777766654333211
Q ss_pred CCHHHH-HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcC--CCCCccEEEeechhhh
Q 005155 81 MIPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR--WPKPFHFAIVDEVDSV 137 (711)
Q Consensus 81 ~~~~~r-~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r--~~R~~~~aIVDEvDs~ 137 (711)
+.+.+ +.--+|+|++.|-+=+++--=|..= .+.++. ..|.-.++|+||||.|
T Consensus 380 -Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~e----aek~m~~l~~~EWGllllDEVHvv 434 (776)
T KOG1123|consen 380 -TSDAKERFPSGAGVVVTTYSMVAYTGKRSHE----AEKIMDFLRGREWGLLLLDEVHVV 434 (776)
T ss_pred -eccccccCCCCCcEEEEeeehhhhcccccHH----HHHHHHHHhcCeeeeEEeehhccc
Confidence 11111 1335789999997765432111110 111111 1347889999999987
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.42 Score=57.53 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=78.2
Q ss_pred hhHhhhcCccccccCCcccHHHHHHHHcCCCeE--EeCCC-CCccc------ccCCC-----eEEe--ChhHHHHHHHHH
Q 005155 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI--EVPTN-LPNIR------VDLPI-----QSFA--TARGKWEYARQE 345 (711)
Q Consensus 282 q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv--~IPt~-~p~~R------~d~~d-----~i~~--t~~~K~~aIi~e 345 (711)
+.++.....+.-|+||+..- +.|.+..|++.. ..++| .|..+ .+.|+ .-|. +..+-+..+.+.
T Consensus 435 ~~i~~~~~svil~SgTL~p~-~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~ 513 (705)
T TIGR00604 435 KPLFERVRSVILASGTLSPL-DAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGEL 513 (705)
T ss_pred HHHHHhcCEEEEecccCCcH-HHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHH
Confidence 45667778899999999763 346677776422 12222 12110 01111 1121 123345566666
Q ss_pred HHHhhh-cCCcEEEEecchhhHHHHHHHHHHCCCC------eEEEeCCCcchHhHHHHHH--hc--CCCccEEEEc--CC
Q 005155 346 VESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP------HNVLNARPKYAAREAETVA--QA--GRKYAITIST--NM 412 (711)
Q Consensus 346 i~~~~~-~grPVLV~t~Si~~SE~Ls~~L~~~gi~------~~vLnA~~~~~~~Ea~Iia--~A--G~~G~VTIAT--nm 412 (711)
|.+..+ ..-.+|||++|-..-+.+.+.+.+.|+. ..++--...-.+.+.-+-. ++ ...|+|..|+ .-
T Consensus 514 i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk 593 (705)
T TIGR00604 514 LVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGK 593 (705)
T ss_pred HHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCc
Confidence 655543 4567999999999999999888876531 1233221111122322211 11 1268899999 78
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
..=|+|+.
T Consensus 594 ~sEGIDf~ 601 (705)
T TIGR00604 594 VSEGIDFC 601 (705)
T ss_pred ccCccccC
Confidence 89999997
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.81 Score=57.07 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=71.2
Q ss_pred CeEEecCCCcHHHHHHHHHHHH-HH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc--CCC
Q 005155 18 SIAEMKTGEGKTLVSTLAAYLN-AL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY--RCD 93 (711)
Q Consensus 18 ~IaEm~TGEGKTLva~Lpa~l~-AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY--~~D 93 (711)
-++.=-||+|||++....|-+. .+ .-..|.+||==..|-.|-.+.+..+-....... ......+-|+..- ...
T Consensus 276 G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 276 GYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLEDGKGK 352 (962)
T ss_pred eEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhcCCCc
Confidence 3888899999999877666532 22 345799999999999999998888877665544 2222233333322 247
Q ss_pred eEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 94 I~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|+++|.--|.+.-.-+ ......+ .--++|+||||+-
T Consensus 353 ii~TTIQKf~~~~~~~-----~~~~~~~---~~ivvI~DEaHRS 388 (962)
T COG0610 353 IIVTTIQKFNKAVKED-----ELELLKR---KNVVVIIDEAHRS 388 (962)
T ss_pred EEEEEecccchhhhcc-----cccccCC---CcEEEEEechhhc
Confidence 9999988774322211 0011233 6778999999973
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.69 Score=57.76 Aligned_cols=117 Identities=23% Similarity=0.288 Sum_probs=73.3
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--
Q 005155 19 IAEMKTGEGKTLV-STLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-- 87 (711)
Q Consensus 19 IaEm~TGEGKTLv-a~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~-- 87 (711)
|..=.-|=||||- ..+.|-=+... -.++.|||| ..|+-.=..++.+|+-| |+|..-+|. |.+|.
T Consensus 998 ILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf~pf--L~v~~yvg~--p~~r~~l 1072 (1549)
T KOG0392|consen 998 ILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKFFPF--LKVLQYVGP--PAERREL 1072 (1549)
T ss_pred eeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHhcch--hhhhhhcCC--hHHHHHH
Confidence 5556779999994 33333323333 136899999 56888877888888888 444433332 44443
Q ss_pred -hcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh-----------cCCCceeccCCC
Q 005155 88 -SNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-----------EGRNPLLISGEA 152 (711)
Q Consensus 88 -~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD-----------ea~tPLiiSg~~ 152 (711)
..| ++||++..= |-+|+-. +..+.. ..+|||+||-|.|=-- -|.+-||+||.+
T Consensus 1073 R~q~~~~~iiVtSY-----Dv~RnD~----d~l~~~---~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTP 1138 (1549)
T KOG0392|consen 1073 RDQYKNANIIVTSY-----DVVRNDV----DYLIKI---DWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTP 1138 (1549)
T ss_pred HhhccccceEEeeH-----HHHHHHH----HHHHhc---ccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCC
Confidence 234 568887763 3344221 123445 8999999999975211 156679999964
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=90.69 E-value=2.2 Score=50.92 Aligned_cols=61 Identities=15% Similarity=-0.003 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhCC---CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
+-|..+....+.. .+++=..|+|||-+.+-.+......|..|.|++|+..-+..-.+.+..
T Consensus 160 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 160 ESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4577777666543 278888999999765544442334789999999998777766665543
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.65 Score=53.17 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=91.5
Q ss_pred eEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcC-CCeE
Q 005155 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ-MPVI 314 (711)
Q Consensus 236 ~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~-l~vv 314 (711)
+|+|.|+..-|....-..-+=|.+.+..+-.+ |+.-||.|+. +.-|+..|+ .+++
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~rpdL----------------------k~vvmSatl~--a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNRPDL----------------------KLVVMSATLD--AEKFQRYFGNAPLL 216 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhCCCc----------------------eEEEeecccc--hHHHHHHhCCCCee
Confidence 56788876555554333333344444444332 4567888874 456887775 5799
Q ss_pred EeCCCCCcccccCCCeEEeC--hhHHHHHHHHHHHHhhhcCCc--EEEEecchhhHHHHHHHHHHC-------CCCeEEE
Q 005155 315 EVPTNLPNIRVDLPIQSFAT--ARGKWEYARQEVESMFRLGRP--VLVGSTSVENSEYLSDLLKQQ-------GIPHNVL 383 (711)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t--~~~K~~aIi~ei~~~~~~grP--VLV~t~Si~~SE~Ls~~L~~~-------gi~~~vL 383 (711)
.||.-.|+-+ +|.. +.+.++|.+..|.+.|..+-| ||||-..-++.|...+.+..+ +-+..|+
T Consensus 217 ~vpg~~PvEi------~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925|consen 217 AVPGTHPVEI------FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred ecCCCCceEE------EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 9997555533 3443 456778999999999876666 999999999888777766643 2233333
Q ss_pred eCCCcchHh--HHHHHHhcCCCc-cEEEEcCCCcC
Q 005155 384 NARPKYAAR--EAETVAQAGRKY-AITISTNMAGR 415 (711)
Q Consensus 384 nA~~~~~~~--Ea~Iia~AG~~G-~VTIATnmAGR 415 (711)
--.|++..+ |..=...-|..| .|.|+||+|-=
T Consensus 291 PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaet 325 (699)
T KOG0925|consen 291 PLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAET 325 (699)
T ss_pred ecCchhhccccCCCCcccCCCccceEEEEecchhe
Confidence 222323222 222122334444 69999999863
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.3 Score=38.26 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=33.2
Q ss_pred eEEecCCCcHH-HHHHHHHHHHH-Hc--CCCEEEEecCHHHHHHHHHHH
Q 005155 19 IAEMKTGEGKT-LVSTLAAYLNA-LT--GEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 19 IaEm~TGEGKT-Lva~Lpa~l~A-L~--G~~VhVvT~NdyLA~RDae~~ 63 (711)
+++-.-|+||| +++-+.+++.+ .. |+.|.|+|+|...+.+-.+.+
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 45899999999 44444444322 11 889999999999999877776
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.97 Score=45.96 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=40.3
Q ss_pred cCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 23 KTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 23 ~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
.||.|||-+ +=|+++ ..+.|+.|-++|.-.|=+- -.++++.+.+.+|+.+.......+
T Consensus 9 ptGvGKTTt~aKLAa~-~~~~~~~v~lis~D~~R~g-a~eQL~~~a~~l~vp~~~~~~~~~ 67 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAAR-LKLKGKKVALISADTYRIG-AVEQLKTYAEILGVPFYVARTESD 67 (196)
T ss_dssp STTSSHHHHHHHHHHH-HHHTT--EEEEEESTSSTH-HHHHHHHHHHHHTEEEEESSTTSC
T ss_pred CCCCchHhHHHHHHHH-HhhccccceeecCCCCCcc-HHHHHHHHHHHhccccchhhcchh
Confidence 599999875 556665 5666999999998655322 347888899999999876544433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.4 Score=44.52 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=37.4
Q ss_pred hhHHHHHHHHh-CC-C--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Q 005155 5 DVQIIGGAVLH-DG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEW 62 (711)
Q Consensus 5 dvQl~g~~~L~-~G-~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~ 62 (711)
+-|.-+.-.++ .+ + +.+=.-|.|||-+....+-...-.|..|.+++|+.-.|.+-.+.
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 44666666554 44 2 67789999999653332222233689999999999988875444
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.9 Score=46.14 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=36.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
=.||+|||-+++-.|...+-.|+.|.+++...|=+ ...+++....+..|+.+-
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~-~a~~ql~~~~~~~~i~~~ 131 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA-AAIEQLEEWAKRLGVDVI 131 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH-HHHHHHHHHHHhCCeEEE
Confidence 48999999765554444567899999999765422 224566667777786644
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=89.21 E-value=3 Score=47.65 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=53.9
Q ss_pred cCCCcHHHHHH-HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH------hccCCC-
Q 005155 23 KTGEGKTLVST-LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR------SNYRCD- 93 (711)
Q Consensus 23 ~TGEGKTLva~-Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-r~------~aY~~D- 93 (711)
.+|.|||-+++ |+++ ..-.|+.|.+|+.-.|=+ --.+|++..-+..|+.+-......+|.. .+ ..-.+|
T Consensus 108 ~~GvGKTTtaaKLA~~-l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~Dv 185 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYY-YQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDI 185 (429)
T ss_pred CCCCCHHHHHHHHHHH-HHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCE
Confidence 59999986544 5554 457799999999876654 3446777777888888766555444411 11 112466
Q ss_pred eEEECCCchhhH
Q 005155 94 ITYTNNSELGFD 105 (711)
Q Consensus 94 I~YgT~~elgfD 105 (711)
|++=|+|++..|
T Consensus 186 ViIDTaGr~~~d 197 (429)
T TIGR01425 186 IIVDTSGRHKQE 197 (429)
T ss_pred EEEECCCCCcch
Confidence 667789988765
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.00 E-value=14 Score=45.22 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=58.2
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHH-HHcC------CC-EEEEecCH----HHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLN-ALTG------EG-VHVVTVND----YLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~-AL~G------~~-VhVvT~Nd----yLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
++.+- |+.=.||+|||-- +|-+|. |=.| .+ +.|--|-+ ..|+|-+.+++. ||=.|+....
T Consensus 268 In~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~----~~~eVsYqIR 341 (1172)
T KOG0926|consen 268 INENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV----LGSEVSYQIR 341 (1172)
T ss_pred hhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc----CccceeEEEE
Confidence 34444 7788999999964 344432 2211 12 33333333 467888888775 5666665331
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
= +....-...|-+-|-|=| ||. |.. +..++ .+.++||||||.
T Consensus 342 f----d~ti~e~T~IkFMTDGVL----LrE-i~~---DflL~---kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 342 F----DGTIGEDTSIKFMTDGVL----LRE-IEN---DFLLT---KYSVIILDEAHE 383 (1172)
T ss_pred e----ccccCCCceeEEecchHH----HHH-HHH---hHhhh---hceeEEechhhh
Confidence 0 000111235888888755 443 332 45666 899999999995
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.5 Score=51.88 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=49.5
Q ss_pred HHhccCC-CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh------------hhcCCCceecc--C
Q 005155 86 RRSNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL------------IDEGRNPLLIS--G 150 (711)
Q Consensus 86 r~~aY~~-DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L------------iDea~tPLiiS--g 150 (711)
|++.|.. .|+.+|+.=+.-|.|...+.- . .+.-+||||||++. -+.+..|+|.+ .
T Consensus 1 R~~ly~~ggi~~~T~rIl~~DlL~~ri~~-------~---~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSd 70 (814)
T TIGR00596 1 REKVYLEGGIFSITSRILVVDLLTGIIPP-------E---LITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSD 70 (814)
T ss_pred ChhHhhcCCEEEEechhhHhHHhcCCCCH-------H---HccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecC
Confidence 3456765 899999999988888765432 2 67789999999863 23366777753 3
Q ss_pred CCCCCccchHHHHHHHHHcc
Q 005155 151 EASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~ 170 (711)
.+..-..-|..+..+.+.|-
T Consensus 71 sP~~~~~g~~~l~~vmk~L~ 90 (814)
T TIGR00596 71 NPEAFTMGFSPLETKMRNLF 90 (814)
T ss_pred CCcccccchHHHHHHHHHhC
Confidence 33322234556667766663
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.7 Score=53.42 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=69.0
Q ss_pred hhHHHHHHHHhCC---CeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC-
Q 005155 5 DVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG- 80 (711)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~- 80 (711)
..|.-|+.-.|.- .++.=.-|+|||-+....+=+....|+.|.+.+.+-.=.-...-.+.+ +|+...-+-.+
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~----~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG----FGIYILRLGSEE 747 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc----cCcceeecCCcc
Confidence 3566676644422 266667899999776666655678999999988875433322222222 22222111111
Q ss_pred -CCHHHHH----------------hccC-CCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhhhhc
Q 005155 81 -MIPEERR----------------SNYR-CDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 81 -~~~~~r~----------------~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
.-|+.++ ..|+ ..||-+|-=-+. +.+ +.| .|+|||||||=.|+.--
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~------------~plf~~R---~FD~cIiDEASQI~lP~ 812 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN------------HPLFVNR---QFDYCIIDEASQILLPL 812 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC------------chhhhcc---ccCEEEEccccccccch
Confidence 1122222 2233 356666642221 122 334 89999999999987554
Q ss_pred CCCceecc
Q 005155 142 GRNPLLIS 149 (711)
Q Consensus 142 a~tPLiiS 149 (711)
.--||.+|
T Consensus 813 ~LgPL~~s 820 (1100)
T KOG1805|consen 813 CLGPLSFS 820 (1100)
T ss_pred hhhhhhhc
Confidence 44454444
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.4 Score=50.47 Aligned_cols=68 Identities=26% Similarity=0.230 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHH-HHHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv-a~Lpa~l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
|-|..++...+..+ |+.=..|+|||-+ ..+.+.+..+.+ ..|.+++||--=|+|-.|.++....-+++
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 68999998777776 7777899999853 444444445532 46889999999999999988766655544
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.4 Score=46.05 Aligned_cols=118 Identities=19% Similarity=0.093 Sum_probs=72.8
Q ss_pred hhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
+-|.-.+-. .+|. ++...-|+|||.+.+--+.-....+ ..+.++|.|...|..-.+.+...+...+....
T Consensus 3 ~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~---- 77 (315)
T PF00580_consen 3 DEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS---- 77 (315)
T ss_dssp HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT----
T ss_pred HHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc----
Confidence 345555444 4555 8899999999998766654222233 47999999999888777777775543321100
Q ss_pred CCC-HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 80 GMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 80 ~~~-~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
.+ .-.........+.++|...|....|+.+..... - ..++-|+|+.+.
T Consensus 78 -~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-----~---~~~~~i~~~~~~ 126 (315)
T PF00580_consen 78 -DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-----I---DPNFEILDEEEQ 126 (315)
T ss_dssp -T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-----S---HTTTEEECHHHH
T ss_pred -ccccccccccccchheeehhhhhhhhhhhhhhhhhh-----c---cccceeecchhc
Confidence 00 001112234568889999998888877644321 1 346788888874
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.7 Score=44.90 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=27.6
Q ss_pred hHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEecCH
Q 005155 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVND 53 (711)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~--~VhVvT~Nd 53 (711)
-|....=+|.+.. ++.-..|+|||+.|+-.++-....|+ .+.++-|+-
T Consensus 8 ~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 8 EQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp HHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred HHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 3555555666555 77888999999988777753334454 444444443
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.16 E-value=1.7 Score=51.00 Aligned_cols=55 Identities=16% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHH
Q 005155 7 QIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61 (711)
Q Consensus 7 Ql~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae 61 (711)
|--+.......+ +.+=.-|+|||-+.+..+...-..|++|.|+.|+..=-.-..+
T Consensus 190 Qk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 190 QKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred HHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHH
Confidence 444444444442 7778899999998888887555689999999998764444333
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.89 E-value=0.5 Score=51.46 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=24.0
Q ss_pred hhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 103 gfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
.|++|+..... ....+.. ++.++|+||+|+|--|
T Consensus 111 ~fakl~~~~~~-~~~~~~~---~fKiiIlDEcdsmtsd 144 (346)
T KOG0989|consen 111 NFAKLTVLLKR-SDGYPCP---PFKIIILDECDSMTSD 144 (346)
T ss_pred CHHHHhhcccc-ccCCCCC---cceEEEEechhhhhHH
Confidence 47777776542 2344555 8999999999999543
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=86.69 E-value=4.6 Score=46.19 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=37.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.||+|||.+++-.|....-.|+.|.+|+...|=+ .-.+++..+.+.+|+.+.
T Consensus 103 ~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~-aa~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP-AAYDQLKQLAEKIGVPFY 154 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHHHHHHHcCCcEE
Confidence 6999999866544443455789999999877633 235667777788888754
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.41 E-value=1.1 Score=54.20 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=24.2
Q ss_pred EEecCCCcHHHHHHHHHH-HHHHcCC-CEEEEecCH
Q 005155 20 AEMKTGEGKTLVSTLAAY-LNALTGE-GVHVVTVND 53 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~-l~AL~G~-~VhVvT~Nd 53 (711)
++|.||+|||-+++=.+| ||---|. .-.||.|+.
T Consensus 79 I~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~ 114 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSL 114 (985)
T ss_pred EEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccH
Confidence 799999999999887776 4444554 445556654
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=86.14 E-value=2.4 Score=38.06 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=21.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHH
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA 56 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA 56 (711)
+.-=.+|.|||..+-..+....-.+..|..+..+...+
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 55558999999644443321112355566666555444
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=6.2 Score=45.15 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred EEecCCCcHHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH------hccC
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR------SNYR 91 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-r~------~aY~ 91 (711)
.-=.+|+|||.+++-.|+..+.. |+.|.+|+.-.|=+. ..+++..+.+..|+.+-......+|.+ .+ ..-.
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a-a~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~ 183 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA-AIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENG 183 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH-HHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcC
Confidence 33479999997655555434566 999999998766433 235566667788888765433333322 11 1123
Q ss_pred CC-eEEECCCchhh
Q 005155 92 CD-ITYTNNSELGF 104 (711)
Q Consensus 92 ~D-I~YgT~~elgf 104 (711)
+| |++=|++++..
T Consensus 184 ~DvVIIDTaGrl~~ 197 (433)
T PRK10867 184 YDVVIVDTAGRLHI 197 (433)
T ss_pred CCEEEEeCCCCccc
Confidence 56 66778888764
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=85.55 E-value=2.8 Score=40.84 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=31.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
=.+|+|||.++...+...+-.|..|.++....+ -....+.+....+.+|+.+
T Consensus 7 G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~-~~~~~~~l~~~~~~~~~~~ 58 (173)
T cd03115 7 GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY-RPAAIEQLRVLGEQVGVPV 58 (173)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC-ChHHHHHHHHhcccCCeEE
Confidence 358999998765555444556888888875443 2223344555555556554
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=85.52 E-value=4.2 Score=48.18 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHH-HHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv-a~Lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+-|..++-..+.++ ++.=.-|+|||-+ ..+..++..... ..|.+++||--=|.|-.+.++.-...|+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 56877777666666 7777899999863 444444444432 4699999999999998887766554443
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.51 E-value=2.6 Score=43.10 Aligned_cols=32 Identities=38% Similarity=0.407 Sum_probs=22.9
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHH-cCCCEEEEe
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNAL-TGEGVHVVT 50 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL-~G~~VhVvT 50 (711)
+.++-||.||-- +|+|-.++.|+ .|.+|.||=
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 778889888743 45555556777 688888873
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=85.29 E-value=2 Score=46.01 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=32.5
Q ss_pred cCCCcHHHHHHHHHHHHHHc-C-CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALT-G-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~-G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.||.|||-+++-.+...+.. | +.|.+||...|=+.- .+.+..+.+.+|+.+.
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a-~eql~~~~~~~~~p~~ 255 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGA-VEQLKTYAKILGVPVK 255 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhH-HHHHHHHHHHhCCcee
Confidence 59999996544444435565 5 899999987764321 3444444555666553
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=0.94 Score=45.52 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 24 TGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
.|.|||..+.--+.-.+-.|+.|.++.|
T Consensus 11 ~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred CCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5789997666555534457889998855
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.8 Score=42.20 Aligned_cols=43 Identities=23% Similarity=0.112 Sum_probs=29.0
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~ 63 (711)
+.=.+|.|||..+.--++-.+..|.+|..+|.. +-+.+-.+.+
T Consensus 4 i~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~ 46 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENA 46 (187)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHH
Confidence 344689999987766665566789999999874 3344333333
|
A related protein is found in archaea. |
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.90 E-value=67 Score=38.27 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=68.3
Q ss_pred chhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcC-----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
-+-|..++.......++...=|+|||-|.+--+. +-+.. ..+.+||-+.--|..--+ .+-..+|..
T Consensus 4 n~~Q~~av~~~~gp~lV~AGaGsGKT~vlt~Ria-~li~~~~v~p~~Il~vTFTnkAA~em~~---Rl~~~~~~~----- 74 (655)
T COG0210 4 NPEQREAVLHPDGPLLVLAGAGSGKTRVLTERIA-YLIAAGGVDPEQILAITFTNKAAAEMRE---RLLKLLGLP----- 74 (655)
T ss_pred CHHHHHHHhcCCCCeEEEECCCCCchhhHHHHHH-HHHHcCCcChHHeeeeechHHHHHHHHH---HHHHHhCcc-----
Confidence 3556666666644558888999999987666554 22322 269999999999983333 344444440
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
. ...+.++|...|+...||+...... - +-+|-|+|+-|.
T Consensus 75 -~----------~~~~~v~TfHs~~~~~lr~~~~~~~-----~---~~~~~i~d~~d~ 113 (655)
T COG0210 75 -A----------AEGLTVGTFHSFALRILRRHGERLG-----L---NANFTILDSDDQ 113 (655)
T ss_pred -c----------ccCcEEeeHHHHHHHHHHHHHHhcC-----C---CCCCEEecHHHH
Confidence 0 0018899999999999997654321 1 456677777664
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=84.81 E-value=2.6 Score=46.54 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=35.1
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 21 Em~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
-=.+|.|||-+..-.+....-.|..|.+++..-|=+ --.+++....+.+|+.+..
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~-~a~eqL~~~a~~lgv~v~~ 200 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA-GAIEQLEEHAERLGVKVIK 200 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH-HHHHHHHHHHHHcCCceec
Confidence 337999999755444433345678898888664422 1235666677788887653
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.70 E-value=3.6 Score=50.78 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=75.9
Q ss_pred eEEecCCCcHHHH--HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE-EEcCCCCHHHHHhccCCCeE
Q 005155 19 IAEMKTGEGKTLV--STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG-LIQRGMIPEERRSNYRCDIT 95 (711)
Q Consensus 19 IaEm~TGEGKTLv--a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~-~i~~~~~~~~r~~aY~~DI~ 95 (711)
++-+.|-.|||-+ +++=..|.--.-.-|.-|.|++.|-.|++..+..-|+.--+.-+ ...+.++.+=+....+|.|.
T Consensus 530 vIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVL 609 (1330)
T KOG0949|consen 530 VIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPWNCQVL 609 (1330)
T ss_pred EEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCchhceEE
Confidence 8889999999976 44444443334445566899999999999987766643333222 23466777766677899999
Q ss_pred EECCCchhhHHHHHhhhcch-hhhhcCCCCCccEEEeechhhhhhhc
Q 005155 96 YTNNSELGFDYLRDNLAANS-EQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 96 YgT~~elgfDyLrD~l~~~~-~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+.-|.=+ .-.|...+ ...... ..+|+|.||||.+=-.+
T Consensus 610 ITvPecl-----eslLlspp~~q~~ce---rIRyiIfDEVH~iG~~e 648 (1330)
T KOG0949|consen 610 ITVPECL-----ESLLLSPPHHQKFCE---RIRYIIFDEVHLIGNEE 648 (1330)
T ss_pred EEchHHH-----HHHhcCchhhhhhhh---cceEEEechhhhccccc
Confidence 8877543 33333322 122333 68899999999875333
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.65 E-value=5.4 Score=47.54 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=49.3
Q ss_pred hHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
-|.-|.-..++.- |.|=.-|+|||.|.+-.+|-.+= .+.+|.|+.|+..-.-+-+|.+- -.||+|.-+.
T Consensus 414 SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh----~tgLKVvRl~ 485 (935)
T KOG1802|consen 414 SQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH----KTGLKVVRLC 485 (935)
T ss_pred HHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH----hcCceEeeee
Confidence 4666777666655 88889999999998877774443 45689999999766655555543 3567777654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=5.3 Score=44.87 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=42.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cC-CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNAL-TG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL-~G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
+.-=.||.|||.++...+....+ .| +.|.++|...|-. -..|++.-+.+.+|+.+..+...
T Consensus 141 ~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~-ga~EqL~~~a~~~gv~~~~~~~~ 203 (374)
T PRK14722 141 ALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI-GGHEQLRIFGKILGVPVHAVKDG 203 (374)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc-cHHHHHHHHHHHcCCceEecCCc
Confidence 34447999999876655543344 36 5899999877732 35677888888999988766544
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=83.33 E-value=1.1 Score=39.74 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=22.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCC--CEEEEecCHHHHH
Q 005155 20 AEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQ 57 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa~l~AL~G~--~VhVvT~NdyLA~ 57 (711)
..=.+|.|||.++...+. .+... .|..++.+.....
T Consensus 7 l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 7 IVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred EECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEcccc
Confidence 344699999977665554 34333 5777777655443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=83.31 E-value=5.6 Score=36.93 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=25.0
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHH
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~ 57 (711)
=.+|.|||..+...+...+-.|..|.++..-..+..
T Consensus 6 G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 6 GPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 358999998666555545557888888877655443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=5.3 Score=43.73 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=32.1
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.+|+|||-++.-.|...+..|+.|.+++..-|=+ ...+++.......|+.+.
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~-~a~eql~~~a~~~~i~~~ 173 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA-AAIEQLQVWGERVGVPVI 173 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch-hhHHHHHHHHHHcCceEE
Confidence 7999999765555555677899999998754311 122344444445565543
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=82.27 E-value=2.4 Score=42.01 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=21.9
Q ss_pred eEEecC--CCcHHHHHHHHHHHHHHcCCCEEE---EecC
Q 005155 19 IAEMKT--GEGKTLVSTLAAYLNALTGEGVHV---VTVN 52 (711)
Q Consensus 19 IaEm~T--GEGKTLva~Lpa~l~AL~G~~VhV---vT~N 52 (711)
+.++-| |-|||-+|.--++-.+-.|.+|.+ +...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~ 42 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC
Confidence 344544 556776655555556678999998 6554
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.49 E-value=1.8 Score=51.60 Aligned_cols=40 Identities=38% Similarity=0.371 Sum_probs=30.8
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHc
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALT 42 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~ 42 (711)
.|||+|+-=.- +|-+|+ |-|-.||+||||.....+. .+|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal-tWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL-TWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH-HHHH
Confidence 69999975433 456899 7899999999998776664 6664
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=81.43 E-value=5.6 Score=41.24 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=18.8
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCCEEEEec
Q 005155 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 19 IaEm~TGEGKTL-va~Lpa~l~AL~G~~VhVvT~ 51 (711)
+.-=.||.|||. +-++... ..-.|..|..++.
T Consensus 45 ~l~G~~G~GKThL~~a~~~~-~~~~~~~~~y~~~ 77 (233)
T PRK08727 45 YLSGPAGTGKTHLALALCAA-AEQAGRSSAYLPL 77 (233)
T ss_pred EEECCCCCCHHHHHHHHHHH-HHHcCCcEEEEeH
Confidence 555679999994 4333332 1234666666664
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=81.32 E-value=11 Score=43.02 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=51.2
Q ss_pred EEecCCCcHHHHHHHHH-HHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-----HHh--ccC
Q 005155 20 AEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-----RRS--NYR 91 (711)
Q Consensus 20 aEm~TGEGKTLva~Lpa-~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-----r~~--aY~ 91 (711)
.-=.+|+|||.+++-.| ++..-.|+.|.+|+...|=+. -.+++....+..|+.+-......+|.+ .+. .-.
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~ 182 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENG 182 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcC
Confidence 44469999997655444 433347999999988765332 234455556778887665444334421 111 123
Q ss_pred CC-eEEECCCchhhH
Q 005155 92 CD-ITYTNNSELGFD 105 (711)
Q Consensus 92 ~D-I~YgT~~elgfD 105 (711)
+| |++=|++++..|
T Consensus 183 ~DvVIIDTaGr~~~d 197 (428)
T TIGR00959 183 FDVVIVDTAGRLQID 197 (428)
T ss_pred CCEEEEeCCCccccC
Confidence 56 777888887653
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.07 E-value=4.9 Score=49.26 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 16 DGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 16 ~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
.|++ -|.-|.|||.+++=.+ .||....+..+.|+=.|-.|-..+... -+.+.++...++++
T Consensus 182 RGkL-IMAcGTGKTfTsLkis--Eala~~~iL~LvPSIsLLsQTlrew~~-~~~l~~~a~aVcSD 242 (1518)
T COG4889 182 RGKL-IMACGTGKTFTSLKIS--EALAAARILFLVPSISLLSQTLREWTA-QKELDFRASAVCSD 242 (1518)
T ss_pred CCcE-EEecCCCccchHHHHH--HHHhhhheEeecchHHHHHHHHHHHhh-ccCccceeEEEecC
Confidence 3554 4889999999876554 577779999999999888776554332 24566777777765
|
|
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=80.18 E-value=3.6 Score=41.60 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEecCCCcHH-HHHHHHHHHHHH-cCCCEEEE
Q 005155 19 IAEMKTGEGKT-LVSTLAAYLNAL-TGEGVHVV 49 (711)
Q Consensus 19 IaEm~TGEGKT-Lva~Lpa~l~AL-~G~~VhVv 49 (711)
+.++-||.||- -+|+|-..+.|+ .|.+|+|+
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~ii 55 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEE
Confidence 67888888873 245555555666 78899987
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 711 | ||||
| 1nkt_A | 922 | Crystal Structure Of The Seca Protein Translocation | 1e-125 | ||
| 1nkt_A | 922 | Crystal Structure Of The Seca Protein Translocation | 3e-28 | ||
| 1m6n_A | 802 | Crystal Structure Of The Seca Translocation Atpase | 1e-124 | ||
| 1m6n_A | 802 | Crystal Structure Of The Seca Translocation Atpase | 1e-24 | ||
| 2ibm_A | 780 | A Novel Dimer Interface And Conformational Changes | 1e-124 | ||
| 2ibm_A | 780 | A Novel Dimer Interface And Conformational Changes | 1e-24 | ||
| 3dl8_A | 779 | Structure Of The Complex Of Aquifex Aeolicus Secyeg | 1e-124 | ||
| 3dl8_A | 779 | Structure Of The Complex Of Aquifex Aeolicus Secyeg | 1e-24 | ||
| 3jv2_A | 783 | Crystal Structure Of B. Subtilis Seca With Bound Pe | 1e-124 | ||
| 3jv2_A | 783 | Crystal Structure Of B. Subtilis Seca With Bound Pe | 1e-24 | ||
| 1tf2_A | 844 | Crystal Structure Of Seca:adp In An Open Conformati | 1e-124 | ||
| 1tf2_A | 844 | Crystal Structure Of Seca:adp In An Open Conformati | 1e-24 | ||
| 3iqm_A | 802 | Active Site Mutants Of B. Subtilis Seca Length = 80 | 1e-124 | ||
| 3iqm_A | 802 | Active Site Mutants Of B. Subtilis Seca Length = 80 | 1e-24 | ||
| 3iqy_A | 841 | Active Site Mutants Of B. Subtilis Seca Length = 84 | 1e-123 | ||
| 3iqy_A | 841 | Active Site Mutants Of B. Subtilis Seca Length = 84 | 9e-25 | ||
| 2ipc_A | 997 | Crystal Structure Of The Translocation Atpase Seca | 1e-118 | ||
| 2ipc_A | 997 | Crystal Structure Of The Translocation Atpase Seca | 4e-29 | ||
| 3din_A | 871 | Crystal Structure Of The Protein-Translocation Comp | 1e-114 | ||
| 3din_A | 871 | Crystal Structure Of The Protein-Translocation Comp | 3e-24 | ||
| 3jux_A | 822 | Structure Of The Translocation Atpase Seca From The | 1e-114 | ||
| 3jux_A | 822 | Structure Of The Translocation Atpase Seca From The | 3e-24 | ||
| 2fsf_A | 853 | Escherichia Coli Seca, The Preprotein Translocase D | 1e-114 | ||
| 2fsf_A | 853 | Escherichia Coli Seca, The Preprotein Translocase D | 8e-21 | ||
| 2vda_A | 828 | Solution Structure Of The Seca-Signal Peptide Compl | 1e-114 | ||
| 2vda_A | 828 | Solution Structure Of The Seca-Signal Peptide Compl | 8e-21 | ||
| 2fsg_A | 853 | Complex Seca:atp From Escherichia Coli Length = 853 | 1e-110 | ||
| 2fsg_A | 853 | Complex Seca:atp From Escherichia Coli Length = 853 | 9e-20 | ||
| 3bxz_A | 471 | Crystal Structure Of The Isolated Dead Motor Domain | 3e-49 | ||
| 3bxz_A | 471 | Crystal Structure Of The Isolated Dead Motor Domain | 7e-36 | ||
| 3bxz_A | 471 | Crystal Structure Of The Isolated Dead Motor Domain | 8e-15 |
| >pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 | Back alignment and structure |
|
| >pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 | Back alignment and structure |
|
| >pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 | Back alignment and structure |
|
| >pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 | Back alignment and structure |
|
| >pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 | Back alignment and structure |
|
| >pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 | Back alignment and structure |
|
| >pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 | Back alignment and structure |
|
| >pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 | Back alignment and structure |
|
| >pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 | Back alignment and structure |
|
| >pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 | Back alignment and structure |
|
| >pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 | Back alignment and structure |
|
| >pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 | Back alignment and structure |
|
| >pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 | Back alignment and structure |
|
| >pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 | Back alignment and structure |
|
| >pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 | Back alignment and structure |
|
| >pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 | Back alignment and structure |
|
| >pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 | Back alignment and structure |
|
| >pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 | Back alignment and structure |
|
| >pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 | Back alignment and structure |
|
| >pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 | Back alignment and structure |
|
| >pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 | Back alignment and structure |
|
| >pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 | Back alignment and structure |
|
| >pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 | Back alignment and structure |
|
| >pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 | Back alignment and structure |
|
| >pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 | Back alignment and structure |
|
| >pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 | Back alignment and structure |
|
| >pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 | Back alignment and structure |
|
| >pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 | Back alignment and structure |
|
| >pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 | Back alignment and structure |
|
| >pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 | Back alignment and structure |
|
| >pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Length = 997 | Back alignment and structure |
|---|
Score = 827 bits (2137), Expect = 0.0
Identities = 302/733 (41%), Positives = 423/733 (57%), Gaps = 26/733 (3%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGGAVLH+G IAEMKTGEGKTLV+TLA LNALTG+GVHVVTVNDYLA+RDA
Sbjct: 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDA 137
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM V+R LGLSVG+IQ P ERR Y D+TY NSELGFDYLRDN+A + +QLV+
Sbjct: 138 EWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------- 173
R P H+AI+DEVDS+LIDE R PL+ISG A K Y A++A+ L +GL
Sbjct: 198 RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVR 257
Query: 174 -----HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRD 227
YTVE KN SV LT +GIA AE L L+ EN A ++ A++AKE Y RD
Sbjct: 258 KEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317
Query: 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKL 287
YIV++G+ +I++E TGR+ RR+ EG+HQA+EAKEG++I+ ++ +A ITYQ+ F+L
Sbjct: 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRL 377
Query: 288 YPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVE 347
Y K +GMTGTAKTEEKEF +++ M V+ VPTN P IR D P + T +GK+ +E+
Sbjct: 378 YEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIA 437
Query: 348 SMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP--------KYAAREAETVAQ 399
+ G+PVLVG+ S+E SE LS +LK+ + L R K E E + +
Sbjct: 438 EKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRK 497
Query: 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKV 459
+ A ++A I GN + + + L + R+ + +V + +
Sbjct: 498 LLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE 557
Query: 460 LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFF---SESVEMSQSMNLKELQ 516
+ S + + + G + Y A + E + +K++
Sbjct: 558 AEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMV 617
Query: 517 KLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQ 576
++++ + L +++ C + V+ LGGL +IGT HESRRIDNQ
Sbjct: 618 AGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQ 677
Query: 577 LRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLL 636
LRGRAGRQGDPG +RF VS D++ + F+ D + ++ R+ D+ PIE + R +
Sbjct: 678 LRGRAGRQGDPGGSRFYVSFDDDLMRLFASD--RVIAMLDRMGFDDSEPIEHPMVTRSIE 735
Query: 637 GLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDE 696
Q E F IRK L++FD+VL QR+ +Y R+ IL G +E + ++ V
Sbjct: 736 RAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVAS 795
Query: 697 IIFGNVDPLKILE 709
+ ++P E
Sbjct: 796 LAENFLNPEVHPE 808
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 | Back alignment and structure |
|---|
Score = 730 bits (1887), Expect = 0.0
Identities = 227/439 (51%), Positives = 306/439 (69%), Gaps = 6/439 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
R FDVQ++G A LH G++AEMKTGEGKTL L AYLNAL G GVH+VTVNDYLA+RD+
Sbjct: 110 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDS 169
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGL VG+I M P+ERR Y DITY N+E GFDYLRDN+A + + LV
Sbjct: 170 EWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R H+AIVDEVDS+LIDE R PL+ISG A Y A++A L+ + +HY V+L+
Sbjct: 230 R---GHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLR 286
Query: 181 NNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
+V + E+G+ E L ++L++ N P ++ NALKAKE + RD YIVR+G+ LI
Sbjct: 287 KRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLI 346
Query: 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
++E TGRV RR++EG+HQA+EAKE ++I+A++ +A IT Q+ F+LY KL+GMTGTA+
Sbjct: 347 VDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQ 406
Query: 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
TE E +++++ V+ +PTN+P IR D + T K+ +V + G+PVL+G
Sbjct: 407 TEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIG 466
Query: 360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
+TSVE SEYLS ++ IPHNVLNA KY +EA +A AGR+ +T++TNMAGRGTDI
Sbjct: 467 TTSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAVAGRRGGVTVATNMAGRGTDI 524
Query: 420 ILGGNPKMLAKKIIEDRLL 438
+LGGN L + + +R L
Sbjct: 525 VLGGNVDFLTDQRLRERGL 543
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 3e-50
Identities = 65/163 (39%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Query: 536 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVS 595
+ S L + S E EV GGL+V+GT HESRRIDNQLRGR+GRQGDPG +RF +S
Sbjct: 556 WHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLS 615
Query: 596 LQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVE 655
L DE+ ++F+ L++R+ +D+PIE + R + Q E+ F +RK++++
Sbjct: 616 LGDELMRRFNGA--ALETLLTRLNLPDDVPIEAKMVTRAIKSAQTQVEQQNFEVRKNVLK 673
Query: 656 FDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEII 698
+DEV+ QRK +Y R+ IL G E+ Q ++ V+ +
Sbjct: 674 YDEVMNQQRKVIYAERRRILEG--ENLKDQALDMVRDVITAYV 714
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 | Back alignment and structure |
|---|
Score = 688 bits (1779), Expect = 0.0
Identities = 225/429 (52%), Positives = 301/429 (70%), Gaps = 6/429 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
M F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDA
Sbjct: 82 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDA 141
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
E M ++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V
Sbjct: 142 EQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
R P HFA++DEVDS+LIDE R PL+ISG+A+K Y A L YT ++K
Sbjct: 202 R---PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIK 258
Query: 181 NNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
+V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I
Sbjct: 259 TKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318
Query: 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
++ TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAK
Sbjct: 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAK 378
Query: 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
TEE+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG
Sbjct: 379 TEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVG 438
Query: 360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
+ +VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAGRGTDI
Sbjct: 439 TVAVETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGRGTDI 496
Query: 420 ILGGNPKML 428
LG K L
Sbjct: 497 KLGEGVKEL 505
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 1e-43
Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F +
Sbjct: 499 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAE--R 556
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
+ ++ R D+ PI+ + R + Q E F RK L+++D+VL QR+ +Y
Sbjct: 557 TMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQ 616
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKILE 709
R ++ E+ + + +++ ++ I ++ E
Sbjct: 617 RFEVIDS--ENLREIVENMIKSSLERAIAAYTPREELPE 653
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 | Back alignment and structure |
|---|
Score = 685 bits (1770), Expect = 0.0
Identities = 221/455 (48%), Positives = 293/455 (64%), Gaps = 24/455 (5%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VL++ IAEM+TGEGKTL +TL AYLNALTG+GVHVVTVNDYLAQRDA
Sbjct: 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDA 132
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
E + FLGL+VG+ GM +R Y DITY N+E GFDYLRDN+A + E+ V
Sbjct: 133 ENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 192
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------- 173
R H+A+VDEVDS+LIDE R PL+ISG A Y K+ L++
Sbjct: 193 R---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETF 249
Query: 174 ----HYTVELKNNSVELTEEGIALAEMAL-------ETNDLWD-ENDPWARFVMNALKAK 221
H++V+ K+ V LTE G+ L E L E L+ N V AL+A
Sbjct: 250 QGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309
Query: 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITY 281
+ RDV YIV++G+ +I++E TGR + RRWS+G+HQAVEAKEG++IQ ++ +A IT+
Sbjct: 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITF 369
Query: 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEY 341
Q+ F+LY KL+GMTGTA TE EF ++++ + VPTN P IR DLP + T K +
Sbjct: 370 QNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQA 429
Query: 342 ARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAG 401
++++ G+PVLVG+ S+E SE +S+ L + GI HNVLNA K+ A EA VAQAG
Sbjct: 430 IIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA--KFHANEAAIVAQAG 487
Query: 402 RKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDR 436
A+TI+TNMAGRGTDI+LGG+ + +
Sbjct: 488 YPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPT 522
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-41
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 547 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSF 606
V GGLH+IGT HESRRIDNQLRGR+GRQGD GS+RF +S++D + + F+
Sbjct: 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS 592
Query: 607 DTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKH 666
D ++ ++ IE + + + Q E F IRK L+E+D+V QR+
Sbjct: 593 D--RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRA 650
Query: 667 VYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704
+Y R +L S+ I + V I + P
Sbjct: 651 IYSQRNELLDV--SDVSETINSIREDVFKATIDAYIPP 686
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 | Back alignment and structure |
|---|
Score = 648 bits (1673), Expect = 0.0
Identities = 220/479 (45%), Positives = 300/479 (62%), Gaps = 56/479 (11%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MR FDVQ++GG LH+G +AEMKTGEGKTL +T+ YLNAL G+GVH+VTVNDYLA+RDA
Sbjct: 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDA 133
Query: 61 EWMERVHRFLGLSVGL-------------------------------------------- 76
WM V+ FLGL VG+
Sbjct: 134 LWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMN 193
Query: 77 ------IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAI 130
Q + R+ Y CD+TY N+E GFDYLRDNL + V R +AI
Sbjct: 194 KEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQR---GHFYAI 250
Query: 131 VDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEG 190
VDE DSVLIDE R PL+ISG + + + Y A++A+ V+ +TV+ K ++ LTEEG
Sbjct: 251 VDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEG 310
Query: 191 IALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEE 249
+A AE + +L+D N ++NALKA +++DV Y+V NG+ +I++E TGR+
Sbjct: 311 VAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLP 370
Query: 250 KRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309
RR+S G+HQA+EAKEG+ I+ +S+ A IT+Q+ F++Y KL+GMTGTAKTEE EF++++
Sbjct: 371 GRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY 430
Query: 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 369
M V+ +PT+ P IR D F T + K+E +E+E ++ G+PVLVG+TS+E SE L
Sbjct: 431 GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELL 490
Query: 370 SDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKML 428
S +LK++GIPH VLNA KY +EAE VA+AG+K +TI+TNMAGRGTDI LG L
Sbjct: 491 SSMLKKKGIPHQVLNA--KYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGPGVAEL 547
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-41
Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G V LGGL +IGT HESRRIDNQLRGRAGRQGDPG + F +SL+D++ + F +
Sbjct: 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSE--Q 598
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
+++ + +E PI+ + + + +Q E F IRK+L+E D+VL+ QR+ VY L
Sbjct: 599 IGKVMNILKIEEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSL 658
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704
R IL + + + + VV +
Sbjct: 659 RDQILLE--KDYDEYLKDIFEDVVSTRVEEFCSG 690
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 5e-13
Identities = 94/691 (13%), Positives = 196/691 (28%), Gaps = 207/691 (29%)
Query: 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFA-IVDEVDSVLIDEGRNPLLISGEASKD 155
E + Y +D L+ + V F + D S+L E + +++S +A
Sbjct: 9 FETGEHQYQY-KDILSVFEDAFV----DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVM 215
R L +T+ K + + +E ++ N + +M
Sbjct: 64 TLR--------------LFWTLLSKQEEM---------VQKFVE--EVLRINYKF---LM 95
Query: 216 NALKA---------KEF-YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKE 265
+ +K + + +RD Y N + R++ + + QA+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLK----LRQAL---- 144
Query: 266 GLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT-------EEKEFLKMFQMPV--IEV 316
L+++ V+ + G+ G+ KT + + + +
Sbjct: 145 -LELRPAKNVL--------------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 317 -----PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSD 371
P + + L W + + + L
Sbjct: 190 KNCNSPETVLEMLQKL----LYQIDPNWT---SRSDHSSNIKLRI------HSIQAELRR 236
Query: 372 LLKQQGIPH------NVLNARPKYAAREAETVAQA---GRKYAITISTNMAGRGTDIILG 422
LLK + + NV NA+ A K I ++T TD +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAK----------AWNAFNLSCK--ILLTTRFKQV-TDFLSA 283
Query: 423 GNPKMLAKKIIEDRLLLLLTREA-------LNVEVDD-----KTSSPKVLSEIKLGSSSL 470
++ + L E L+ D T++P+ LS I
Sbjct: 284 ATTT---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------- 333
Query: 471 ALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMS-QSMNLKELQKLIDKQSAMYPLG 529
A + + + W + + +E S + E +K+ + +++P
Sbjct: 334 -----AESIRDGLATWDN--WKHVNCDK-LTTIIESSLNVLEPAEYRKMF-DRLSVFPPS 384
Query: 530 ---PTVALTYL----------SVLKDCEVHCSNEGSEVKRLGGLHVI----------GTS 566
PT+ L+ + V+ + E + + I +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 567 LHESRRIDNQLRGRAGRQGDPGSTR-------------FMVSLQDEMFQKFS---FDTSW 610
LH R I + D E F D +
Sbjct: 445 LH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKY-------YFGIRKSLVEFDEVLE-- 661
L +I +D + L + Y Y + ++++F +E
Sbjct: 503 ---LEQKIRHD-STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 662 -VQRKHVYDLRQSILTGANESCSQQIFQYMQ 691
+ K+ DL + L +E+ ++ + +Q
Sbjct: 559 LICSKYT-DLLRIALMAEDEAIFEEAHKQVQ 588
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 711 | |||
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 100.0 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.97 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.96 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.95 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.95 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.95 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.95 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.95 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.95 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.95 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.94 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.94 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.94 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.93 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.93 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.93 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.92 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.92 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.92 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.91 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.91 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.9 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.9 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.89 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.88 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.88 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.87 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.87 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.87 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.87 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.86 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.85 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.85 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.85 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.85 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.84 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.83 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.82 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.82 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.79 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.78 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.74 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.74 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.73 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.72 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.72 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.71 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.71 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.71 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.7 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.7 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.68 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.66 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.65 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.64 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.63 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.63 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.6 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.59 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.58 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.58 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.58 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.57 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.57 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.56 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.56 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.53 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.53 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.53 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.52 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.52 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.51 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.5 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.41 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.4 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.38 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.34 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.34 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.31 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.28 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.25 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.17 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.16 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.1 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 98.64 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.93 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 98.87 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 98.84 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 97.92 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.23 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 96.25 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 96.17 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 96.1 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 94.49 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 93.76 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 93.51 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 92.95 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 92.08 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 90.75 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 90.71 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 89.65 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 88.73 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 86.35 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 86.26 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 85.25 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 85.13 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 84.46 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 84.39 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 82.04 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 81.46 |
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-184 Score=1594.34 Aligned_cols=639 Identities=51% Similarity=0.781 Sum_probs=582.0
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+||||||++|+||+|+++|.|++|||||||+|||+||++||++||++||++|++++++
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg 157 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA 157 (997)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred CCCcHHHHhhcccccCCceeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+||||||||++||||||+|+|..+++..+++++|+++|+||||||+||+|+|++|||||||.+....+|.
T Consensus 158 ~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~ 237 (997)
T 2ipc_A 158 STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYY 237 (997)
T ss_dssp CCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHH
T ss_pred CCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHH
Confidence 99999999999999999999999999999998888888888888999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCC------------CeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccC
Q 005155 161 VAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 161 ~~~~i~~~l~~~~------------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d 227 (711)
.++.++..|+++. ||++|+++|+++||++|+.++|+++++++||++.+ .|.|||++||+|+++|++|
T Consensus 238 ~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd 317 (997)
T 2ipc_A 238 KMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317 (997)
T ss_dssp HHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998643 99999999999999999999999999999999887 6999999999999999999
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
+||||+||+|+|||+||||+|+|||||+||||||||||||+|++||+|+|+|||||||++|+||+||||||+||++||++
T Consensus 318 ~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~ 397 (997)
T 2ipc_A 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQE 397 (997)
T ss_dssp HHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH
T ss_pred CCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHH-------------
Q 005155 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK------------- 374 (711)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~------------- 374 (711)
+||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||++||.||++|+
T Consensus 398 iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~ 477 (997)
T 2ipc_A 398 IYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRL 477 (997)
T ss_dssp HHCCCEEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHH
T ss_pred HhCCCEEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------------------HCCCCeEEEeCCCcchH
Q 005155 375 ---------------------------------------------------------------QQGIPHNVLNARPKYAA 391 (711)
Q Consensus 375 ---------------------------------------------------------------~~gi~~~vLnA~~~~~~ 391 (711)
+.||||+|||| ++|+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNA--K~he 555 (997)
T 2ipc_A 478 ELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNA--KHHA 555 (997)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECS--SSHH
T ss_pred hhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccc--cchH
Confidence 78999999999 6899
Q ss_pred hHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHH
Q 005155 392 REAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLA 471 (711)
Q Consensus 392 ~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (711)
+||+||++||++|+||||||||||||||+|||||+++++..++..... +. . +...
T Consensus 556 ~EAeIIAqAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~-----------------~~--~-----~~~~- 610 (997)
T 2ipc_A 556 REAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFD-----------------RY--E-----WKVE- 610 (997)
T ss_dssp HHHHHHHTTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSS-----------------TT--H-----HHHH-
T ss_pred HHHHHHHhcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccc-----------------cc--c-----cccc-
Confidence 999999999999999999999999999999999999986443211000 00 0 0000
Q ss_pred HHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccc
Q 005155 472 LLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEG 551 (711)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (711)
.. ..+++.. ...|.. .+.+. ...++.++. .+.++++.|.+++
T Consensus 611 ~~-----~~~~~~~--~~~~~~----------------~~~~~--------------~~~~~~~~~-~~~~~~~~~~~e~ 652 (997)
T 2ipc_A 611 LF-----IKKMVAG--KEEEAR----------------ALAQE--------------LGIREELLE-RIREIREECKQDE 652 (997)
T ss_dssp HH-----HHHHHHT--CHHHHH----------------HHHHH--------------TTCCHHHHH-HHHHHHHHHHHHH
T ss_pred cc-----ccccccc--chhhcc----------------ccchh--------------hhhhhhHHH-HHHHhhhhhhhhh
Confidence 00 0000000 000000 00000 012233333 3566899999999
Q ss_pred hhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHH
Q 005155 552 SEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAI 631 (711)
Q Consensus 552 ~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~ 631 (711)
++|+++|||||||||||||||||||||||||||||||||+|||||||||||+|| ++++.++|.++++++|+||+|+|+
T Consensus 653 ~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdLmr~fg--~~~~~~~m~~l~~~~~~~Ie~~~v 730 (997)
T 2ipc_A 653 ERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFA--SDRVIAMLDRMGFDDSEPIEHPMV 730 (997)
T ss_dssp HHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHHHHHSS--CTTHHHHHHHTCCCSSSCBCCHHH
T ss_pred hHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChHHHHhhc--hHHHHHHHHHcCCCCCCcccchHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 632 ~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
+++|++||++||++||++||+|++||+|||.||++||++|++||++..+++++.|.+|++++++++|+.|+++..
T Consensus 731 ~~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~ 805 (997)
T 2ipc_A 731 TRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEV 805 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 999999999999999999999999999999999999999999997644789999999999999999988865543
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-176 Score=1501.78 Aligned_cols=566 Identities=49% Similarity=0.786 Sum_probs=554.2
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~- 79 (711)
|||||||++||++||+|+||||+|||||||+|+||+||+||.|++|||||||+|||+||++||+++|+||||+|+++++
T Consensus 74 ~r~~dvQligg~~L~~G~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~ 153 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSL 153 (822)
T ss_dssp CCCCHHHHHHHHHHHTTCEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CCCcHHHHHHHHHHhCCChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------CCCHHHHHhccCCCeEEECCCchhhHHHHHh
Q 005155 80 -------------------------------------------------GMIPEERRSNYRCDITYTNNSELGFDYLRDN 110 (711)
Q Consensus 80 -------------------------------------------------~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~ 110 (711)
+|++++|+++|.||||||||++|||||||||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDn 233 (822)
T 3jux_A 154 GKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDN 233 (822)
T ss_dssp TEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred CcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHhHHhh
Confidence 6889999999999999999999999999999
Q ss_pred hhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhh
Q 005155 111 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEG 190 (711)
Q Consensus 111 l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G 190 (711)
|+.+++++||| +++||||||||||||||||||||||||.+.++++|..++++++.|.++.||++|++.|+++||++|
T Consensus 234 m~~~~~~~vqR---~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G 310 (822)
T 3jux_A 234 LVLDYNDKVQR---GHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEG 310 (822)
T ss_dssp SCSSTTSCCCC---CCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHH
T ss_pred ccCCHHHhccC---CCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHH
Confidence 99999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCcc
Q 005155 191 IALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKI 269 (711)
Q Consensus 191 ~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I 269 (711)
++++|+++++++||++.+ +|.+||++||+|+++|++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|
T Consensus 311 ~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i 390 (822)
T 3jux_A 311 VAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPI 390 (822)
T ss_dssp HHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCC
T ss_pred HHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCC
Confidence 999999999999999876 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHh
Q 005155 270 QADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESM 349 (711)
Q Consensus 270 ~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~ 349 (711)
++||+|+|+|||||||++|+||+||||||+++++||.++||++|++||||+|+.|.+.++.+|.+..+||.+|+++|.++
T Consensus 391 ~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~ 470 (822)
T 3jux_A 391 KEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKR 470 (822)
T ss_dssp CCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHH
Q 005155 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLA 429 (711)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~ 429 (711)
|.+||||||||+|++.||.|++.|++.|++|++|||+ ++++|++++++||++|+||||||||||||||+|||
T Consensus 471 ~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgk--q~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~------ 542 (822)
T 3jux_A 471 YKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAK--YHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGP------ 542 (822)
T ss_dssp HHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSC--HHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCT------
T ss_pred hhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC--chHHHHHHHHhCCCCCeEEEEcchhhCCcCccCCc------
Confidence 9999999999999999999999999999999999994 89999999999999999999999999999999993
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhh
Q 005155 430 KKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQS 509 (711)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (711)
T Consensus 543 -------------------------------------------------------------------------------- 542 (822)
T 3jux_A 543 -------------------------------------------------------------------------------- 542 (822)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCc
Q 005155 510 MNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGS 589 (711)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGs 589 (711)
+|+++||||||+|++|+|+|+|+|++|||||||+||+
T Consensus 543 -------------------------------------------~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 543 -------------------------------------------GVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp -------------------------------------------TTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred -------------------------------------------chhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 5788999999999999999999999999999999999
Q ss_pred ceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Q 005155 590 TRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYD 669 (711)
Q Consensus 590 s~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~ 669 (711)
|+||+|+||++|++|| ++++.++|.++++++|+||+++|++++|++||++||++||++||++++||+|||.||++||+
T Consensus 580 a~~fvsleD~l~r~fg--~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~ 657 (822)
T 3jux_A 580 SIFFLSLEDDLLRIFG--SEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYS 657 (822)
T ss_dssp EEEEEETTSHHHHHTT--HHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhHHHHHhhh--HHHHHHHHHHcCCCCCceeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Q 005155 670 LRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (711)
Q Consensus 670 ~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (711)
+|++||++ +++.+.|.+|++++++++++.|+++
T Consensus 658 ~R~~iL~~--~~~~~~i~~~~~~~~~~~~~~~~~~ 690 (822)
T 3jux_A 658 LRDQILLE--KDYDEYLKDIFEDVVSTRVEEFCSG 690 (822)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHHHHHhCCh
Confidence 99999965 5899999999999999999888753
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-165 Score=1439.00 Aligned_cols=607 Identities=48% Similarity=0.784 Sum_probs=576.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++|+++||+|+||||+|||||||+|+||+|+++|.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg 189 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT 189 (922)
T ss_dssp CCCCHHHHHHHHHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHhHhcCCEEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+||||||||++||||||+|+|..+++..++| +++|+|||||||||+|+|+||||||||.+.+..+|.
T Consensus 190 ~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr---~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 190 MTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR---GHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccC---CCCEEEEeChHHHHHhcCccceeecCCCCcchhHHH
Confidence 99999999999999999999999999999998887788898 999999999999999999999999999999989999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|+++.||.+|++.++++||++|+.++|+++++++||++++ .+.++|.+||+|+.+|++|+||||+||+|+|
T Consensus 267 ~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vvi 346 (922)
T 1nkt_A 267 EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLI 346 (922)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEE
T ss_pred HHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEE
Confidence 999999999878899999999999999999999999999999999987 5999999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||++|||+|+|||||+|||||||+||||+|++++.|+++|||||||++|+||+||||||++|++||+++||++|++||||
T Consensus 347 VDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn 426 (922)
T 1nkt_A 347 VDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 426 (922)
T ss_dssp BCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCS
T ss_pred EecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|+|+||.+|.+..+||.+|+++|.++|+.||||||||.|++.||.|++.|++.||+|++|||+ ++++|++|+++
T Consensus 427 ~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak--~~~rEa~iia~ 504 (922)
T 1nkt_A 427 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK--YHEQEATIIAV 504 (922)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS--CHHHHHHHHHT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC--hhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 79999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||++|||++++++..++..... | .
T Consensus 505 agr~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~------~----~---------------------------- 546 (922)
T 1nkt_A 505 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLD------P----V---------------------------- 546 (922)
T ss_dssp TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCC------T----T----------------------------
T ss_pred cCCCCeEEEecchhhcCccccCCCCHHHHHHHHHhhcccc------c----c----------------------------
Confidence 9999999999999999999999999999987655431100 0 0
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
. .+ ......|...+.++++.|..++++|+++||
T Consensus 547 -------------------------~-----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 579 (922)
T 1nkt_A 547 -------------------------E-----TP-----------------EEYEAAWHSELPIVKEEASKEAKEVIEAGG 579 (922)
T ss_dssp -------------------------T-----SH-----------------HHHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred -------------------------c-----cc-----------------hhhHHHHHHHHHHHHHHHHHhhhHHHhcCC
Confidence 0 00 001123445566788999999999999999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
|||||||||||+|||+|||||||||||||+|+||||+||+|||+|| ++++..+|.++++++++||++++++++|++||
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~aQ 657 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIEAKMVTRAIKSAQ 657 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCCCHHHHHHHHHHH
T ss_pred cEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhh--hHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHh-hc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIF-GN 701 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~ 701 (711)
++||++||++||++++||+|||.||++||++|++||++ +++++.|.+|++++++++|+ .|
T Consensus 658 kkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~~~~~v~~~~ 718 (922)
T 1nkt_A 658 TQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG--ENLKDQALDMVRDVITAYVDGAT 718 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999954 58999999999999999998 55
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-159 Score=1387.60 Aligned_cols=597 Identities=46% Similarity=0.716 Sum_probs=457.5
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+||||+||||||++|+||+++++|.|++|||+|||+|||.||++||+++|+++|++|++++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG 152 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG 152 (853)
T ss_dssp CCCCHHHHHHHHHHHSSEEEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCChHHHhhcccccCCeeeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+|||+||||++|+||||||+|..+++..+++ +++|+||||||+||+|+|++|||||||.+..+.+|.
T Consensus 153 ~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~---~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 153 MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---SCCEEEESCHHHHTTTTTTCEEEEEEC---------
T ss_pred CCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhccc---CCcEEEECchHHHHHhcCcccccccCCCccchhHHH
Confidence 99999999999999999999999999999998877788888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccC-----------CCeEEeCCCCeeeecHhhHHHHHHhc---CC----CCCCCCCC-chHHHHHHHHHHH
Q 005155 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (711)
Q Consensus 161 ~~~~i~~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~AL~A~ 221 (711)
.++.++..|+++ .||++|++.++++||+.|+.++|+++ ++ ++||++++ .+.++|++||+|+
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHH
Confidence 999999999753 49999999999999999999999999 55 57999987 5899999999999
Q ss_pred HHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH
Q 005155 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (711)
Q Consensus 222 ~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te 301 (711)
.+|++|+||+|+||+|+|||++|||+|+||+||+|||||||+||+|+|++++.|+++||||+||++|++|+||||||+||
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
++||+++||++|++||||+|++|+|+||.+|.+..+||.+|+++|.++|..||||||||+|++.||.|++.|++.|++|+
T Consensus 390 ~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~ 469 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 469 (853)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhh
Q 005155 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (711)
+|||+ ++++|++|+++||++|+||||||||||||||++||||++++... . +
T Consensus 470 vLnak--~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~gn~~~~~~~~------~----~----------------- 520 (853)
T 2fsf_A 470 VLNAK--FHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAAL------E----N----------------- 520 (853)
T ss_dssp ECCTT--CHHHHHHHHHTTTSTTCEEEEESCCSSCSCCCTTCCHHHHHHHC------S----S-----------------
T ss_pred EecCC--hhHHHHHHHHhcCCCCeEEEecccccCCcCccCCCchHhhhhhc------c----c-----------------
Confidence 99994 79999999999999999999999999999999999999987310 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhh
Q 005155 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (711)
.+ .+.+.
T Consensus 521 ----------------------------------------------------------------~~---------~~~~~ 527 (853)
T 2fsf_A 521 ----------------------------------------------------------------PT---------AEQIE 527 (853)
T ss_dssp ----------------------------------------------------------------CC---------SSHHH
T ss_pred ----------------------------------------------------------------ch---------hHHHH
Confidence 00 00134
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCC
Q 005155 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (711)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (711)
++++.|.+++++|.++||||||||+||+|+|+|+||+||||||||||+|+||||+||++||.|| ++++..+|.+++++
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~--~~~~~~~~~~~~~~ 605 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA--SDRVSGMMRKLGMK 605 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTC--CHHHHTTGGGGCCC
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHHHhh--HHHHHHHHHhhCCC
Confidence 5678888999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhc
Q 005155 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (711)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (711)
+++||++++++++|++||+++|++||++||++++||+|||.||++||++|+++|++ +++++.|.+|++++++++|+.|
T Consensus 606 ~~~~i~~~~~~~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~--~~~~~~i~~~~~~~~~~~~~~~ 683 (853)
T 2fsf_A 606 PGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV--SDVSETINSIREDVFKATIDAY 683 (853)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHTT
T ss_pred CccccchHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999965 5899999999999999999988
Q ss_pred CCCcc
Q 005155 702 VDPLK 706 (711)
Q Consensus 702 ~~~~~ 706 (711)
+++..
T Consensus 684 ~~~~~ 688 (853)
T 2fsf_A 684 IPPQS 688 (853)
T ss_dssp SCTTC
T ss_pred cCccc
Confidence 76644
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-152 Score=1324.10 Aligned_cols=568 Identities=49% Similarity=0.796 Sum_probs=552.4
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|+|||||++|+++||+|+|+||+|||||||+|+||+|++||.|++|||||||+|||.||++||++||++|||+|++++++
T Consensus 82 ~~pt~VQ~~~ip~ll~G~Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg 161 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS 161 (844)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCcHHHHHhhHHHhCCCEEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|+||||||||++||||||+|+|..+.+..+++ +++|+|||||||||+|+|+||||||||.+.++.+|+
T Consensus 162 ~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr---~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~ 238 (844)
T 1tf5_A 162 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR---PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYV 238 (844)
T ss_dssp SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHH
T ss_pred CCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhccc---CCCEEEECchhhhhhhccccchhhcCCcccchhHHH
Confidence 99999999999999999999999999999998777778888 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEEeCCeEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV~d~~Ivi 239 (711)
.+++++..|+++.||.+|++.++++||++|+.++|+++++++||++++ .|.++|.+||+|+.+|++|+||+|+||+|+|
T Consensus 239 ~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~i 318 (844)
T 1tf5_A 239 QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318 (844)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEE
T ss_pred HHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEE
Confidence 999999999877799999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
||++|||+|+||+||+|||||||+||+|+|++++.|+++||||+||++|++++||||||+++++||.++|+++|+.||||
T Consensus 319 vDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn 398 (844)
T 1tf5_A 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 398 (844)
T ss_dssp BCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred eecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
+|++|.|+++.+|.+..+||.+|++++.++|..|+||||||+|++.||.|+..|++.|++|++|||+ ++++|++++++
T Consensus 399 ~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~--~~~rEr~ii~~ 476 (844)
T 1tf5_A 399 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK--NHEREAQIIEE 476 (844)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSS--CHHHHHHHHTT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC--ccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 78999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+||
T Consensus 477 ag~~g~VlIATdmAgRG~DI~l~--------------------------------------------------------- 499 (844)
T 1tf5_A 477 AGQKGAVTIATNMAGRGTDIKLG--------------------------------------------------------- 499 (844)
T ss_dssp TTSTTCEEEEETTSSTTCCCCCC---------------------------------------------------------
T ss_pred cCCCCeEEEeCCccccCcCcccc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
++|+++||
T Consensus 500 ------------------------------------------------------------------------~~V~~~gg 507 (844)
T 1tf5_A 500 ------------------------------------------------------------------------EGVKELGG 507 (844)
T ss_dssp ------------------------------------------------------------------------TTSGGGTS
T ss_pred ------------------------------------------------------------------------chhhhcCC
Confidence 57899999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCcccchHHHHHHHHHH
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (711)
||||+|++|+|+|+|+|++||||||||||+|+||+|+||++|+.|| ++++..+|.++++++++||+++++++++++||
T Consensus 508 l~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq 585 (844)
T 1tf5_A 508 LAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFG--AERTMAMLDRFGMDDSTPIQSKMVSRAVESSQ 585 (844)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSH--HHHHHHHHHHHTCCSSSCBCCHHHHHHHHHHH
T ss_pred cEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHh--HHHHHHHHHhcCCCCccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
+++|++||++||++++||+|||.||++||++|+++|++ +++.+.|.+|++++++++|+.|+++..
T Consensus 586 ~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (844)
T 1tf5_A 586 KRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS--ENLREIVENMIKSSLERAIAAYTPREE 650 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999999999999999999999999999954 689999999999999999998876543
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=268.72 Aligned_cols=277 Identities=18% Similarity=0.232 Sum_probs=195.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+|+|..+++.+++|+ |+.+.||+|||++|++|++-..+. |..+.|++|+++||.|.++++..+....+
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 157 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESY 157 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCC
Confidence 59999999999999988 999999999999999999754443 56899999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
+++++++++.+...+ ...-++||+++|++.| .|+|... ....+ .+.++||||||.|+ |.+
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~---~~~~lVlDEah~~~-~~g------- 219 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRL-LDFVDRT------FITFE---DTRFVVLDEADRML-DMG------- 219 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHH-HHHHHTT------SCCCT---TCCEEEEETHHHHT-STT-------
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHH-HHHHHhC------Ccccc---cCCeEEEccHhhhh-ccC-------
Confidence 999999999875433 3345789999999987 4554322 12244 78999999999986 443
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~d 229 (711)
+.+.+..++..+.. ...+++. +++++. ...+... +..++. +
T Consensus 220 --------f~~~~~~i~~~~~~-------~~~~q~l-----------------~~SAT~--~~~~~~~--~~~~l~---~ 260 (434)
T 2db3_A 220 --------FSEDMRRIMTHVTM-------RPEHQTL-----------------MFSATF--PEEIQRM--AGEFLK---N 260 (434)
T ss_dssp --------THHHHHHHHHCTTS-------CSSCEEE-----------------EEESCC--CHHHHHH--HHTTCS---S
T ss_pred --------cHHHHHHHHHhcCC-------CCCceEE-----------------EEeccC--CHHHHHH--HHHhcc---C
Confidence 23455566555421 1234444 455553 2233322 122221 2
Q ss_pred eEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHc
Q 005155 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (711)
Q Consensus 230 YiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY 309 (711)
|+. +.++.. + .+...+
T Consensus 261 ~~~-----i~~~~~-~----------------------------~~~~~i------------------------------ 276 (434)
T 2db3_A 261 YVF-----VAIGIV-G----------------------------GACSDV------------------------------ 276 (434)
T ss_dssp CEE-----EEESST-T----------------------------CCCTTE------------------------------
T ss_pred CEE-----EEeccc-c----------------------------cccccc------------------------------
Confidence 221 001000 0 000000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
....+......|...+++.+.+ .+.++||||++++.++.+++.|.+.|+++..+|+++.+
T Consensus 277 -----------------~~~~~~~~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~ 336 (434)
T 2db3_A 277 -----------------KQTIYEVNKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQ 336 (434)
T ss_dssp -----------------EEEEEECCGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCH
T ss_pred -----------------ceEEEEeCcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCH
Confidence 0012234556788887776654 33459999999999999999999999999999998777
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| ...|.|||++|+||+||.
T Consensus 337 ~~R~~~l~~F~~g-~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 337 SQREQALRDFKNG-SMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHHHTS-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHHcC-CCcEEEEchhhhCCCCcc
Confidence 777766655 556 568999999999999994
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=254.20 Aligned_cols=273 Identities=16% Similarity=0.203 Sum_probs=186.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++ ..+ .+..+.|++|+..||.+-++.+..+...+++.++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHH-HHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEE
Confidence 48999999999999887 9999999999999999997 444 4679999999999999999999999999999999
Q ss_pred EEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
...++.+... +...+.++|+++|++.| ++.++.. ....+ .+.++||||||.++ +..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l-~~~l~~~------~~~~~---~~~~vViDEah~~~-~~~----------- 195 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRV-FDMIRRR------SLRTR---AIKMLVLDEADEML-NKG----------- 195 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHT-STT-----------
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHH-HHHHHhC------CccHh---heeEEEEccHHHHH-hhh-----------
Confidence 9999877443 34457899999999887 4555432 12233 78999999999986 321
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+...+..+...+.+ ..
T Consensus 196 ----~~~~~~~i~~~~~~---------~~--------------------------------------------------- 211 (410)
T 2j0s_A 196 ----FKEQIYDVYRYLPP---------AT--------------------------------------------------- 211 (410)
T ss_dssp ----THHHHHHHHTTSCT---------TC---------------------------------------------------
T ss_pred ----hHHHHHHHHHhCcc---------Cc---------------------------------------------------
Confidence 12222222222211 11
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
++.+||+|...+..++.+.|-.+.
T Consensus 212 --------------------------------------------------------~~i~~SAT~~~~~~~~~~~~~~~~ 235 (410)
T 2j0s_A 212 --------------------------------------------------------QVVLISATLPHEILEMTNKFMTDP 235 (410)
T ss_dssp --------------------------------------------------------EEEEEESCCCHHHHTTGGGTCSSC
T ss_pred --------------------------------------------------------eEEEEEcCCCHHHHHHHHHHcCCC
Confidence 133444444433333222222211
Q ss_pred EEeCCCCCc-cccc-CCCeEEe-ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 314 IEVPTNLPN-IRVD-LPIQSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 314 v~IPt~~p~-~R~d-~~d~i~~-t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
+.+...... .... ....+.. ....|...+.+.+... .+.++||||+|++.++.+++.|.+.|+++..+|+++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 313 (410)
T 2j0s_A 236 IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 313 (410)
T ss_dssp EEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred EEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHH
Confidence 111111000 0000 0011122 2334666666555442 456899999999999999999999999999999987666
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++..+-. +.| ...|.|||++++||+||.
T Consensus 314 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 314 ERESIMKEFRSG-ASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHHT-SSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHHCC-CCCEEEECChhhCcCCcc
Confidence 66654444 556 567999999999999994
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=251.22 Aligned_cols=279 Identities=17% Similarity=0.153 Sum_probs=187.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------------------CCCEEEEecCHHHHHH
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------------------GEGVHVVTVNDYLAQR 58 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---------------------G~~VhVvT~NdyLA~R 58 (711)
.|+|+|..++..+++|+ |+.+.||+|||+++.+|++...+. +..+.|++|+..||.+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 58999999999999887 999999999999999999744332 2469999999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 59 DAEWMERVHRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 59 Dae~~~~~y~~LGLtv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
-++++..+...++++++.+.++.+.... ...-.++|+++|++.| .+++.. . ..... .+.++||||||.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~--~~~~~---~~~~iViDEah~ 186 (417)
T 2i4i_A 117 IYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL-VDMMER----G--KIGLD---FCKYLVLDEADR 186 (417)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH-HHHHHT----T--SBCCT---TCCEEEESSHHH
T ss_pred HHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH-HHHHHc----C--CcChh---hCcEEEEEChhH
Confidence 9999999999999999999998875433 3345689999999887 333332 1 12234 789999999999
Q ss_pred hhhhcCCCceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHH
Q 005155 137 VLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN 216 (711)
Q Consensus 137 ~LiDea~tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~ 216 (711)
++ +.++ ...+..+...+... .....
T Consensus 187 ~~-~~~~---------------~~~~~~i~~~~~~~-----~~~~~---------------------------------- 211 (417)
T 2i4i_A 187 ML-DMGF---------------EPQIRRIVEQDTMP-----PKGVR---------------------------------- 211 (417)
T ss_dssp HH-HTTC---------------HHHHHHHHTSSSCC-----CBTTB----------------------------------
T ss_pred hh-ccCc---------------HHHHHHHHHhccCC-----CcCCc----------------------------------
Confidence 86 3321 12222222211000 00011
Q ss_pred HHHHHHHhccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccC
Q 005155 217 ALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTG 296 (711)
Q Consensus 217 AL~A~~l~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTG 296 (711)
++.+||+
T Consensus 212 -------------------------------------------------------------------------~~i~~SA 218 (417)
T 2i4i_A 212 -------------------------------------------------------------------------HTMMFSA 218 (417)
T ss_dssp -------------------------------------------------------------------------EEEEEES
T ss_pred -------------------------------------------------------------------------EEEEEEE
Confidence 2334444
Q ss_pred CcccHHHHHHHHc-CCCeE-EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHH
Q 005155 297 TAKTEEKEFLKMF-QMPVI-EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK 374 (711)
Q Consensus 297 Ta~te~~Ef~~iY-~l~vv-~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~ 374 (711)
|...+..++...| +-.+. .+.........-....++.....|...+.+.+.. +..+.++||||++++.++.+++.|.
T Consensus 219 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~ 297 (417)
T 2i4i_A 219 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDFLY 297 (417)
T ss_dssp CCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHT-CCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4443333322222 11111 1111000000000123345566777776655543 4567899999999999999999999
Q ss_pred HCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 375 QQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 375 ~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+.|+++..+|+++...+++..+-. +.| ...|.|||++++||+||.
T Consensus 298 ~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip 343 (417)
T 2i4i_A 298 HEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVAARGLDIS 343 (417)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHHT-SSCEEEECHHHHTTSCCC
T ss_pred HCCCCeeEecCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcc
Confidence 999999999998766666654444 456 557999999999999994
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=245.26 Aligned_cols=273 Identities=17% Similarity=0.172 Sum_probs=185.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|..+...+++|+ ++.+.||.|||+++.+|++ ..+ .+..+.|++|+..|+.+-++++..++..+|++++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHH-HHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 48999999999998877 9999999999999999997 444 4568999999999999999999999999999999
Q ss_pred EEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
...++...... ...-.++|+++|++.| .+++... ....+ .+.++||||||.++-+.
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~------~~~~~---~~~~vIiDEaH~~~~~~------------ 179 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRV-LDLASRK------VADLS---DCSLFIMDEADKMLSRD------------ 179 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEEESHHHHSSHH------------
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHH-HHHHHhC------Ccccc---cCCEEEEeCchHhhhhc------------
Confidence 99988775433 3345689999999876 3333321 12234 78999999999874111
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+...+..+...+.+ ..
T Consensus 180 ----~~~~~~~i~~~~~~---------~~--------------------------------------------------- 195 (400)
T 1s2m_A 180 ----FKTIIEQILSFLPP---------TH--------------------------------------------------- 195 (400)
T ss_dssp ----HHHHHHHHHTTSCS---------SC---------------------------------------------------
T ss_pred ----hHHHHHHHHHhCCc---------Cc---------------------------------------------------
Confidence 11112222211110 01
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHH-HHHcCCC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF-LKMFQMP 312 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef-~~iY~l~ 312 (711)
++.+||+|......++ ...++.+
T Consensus 196 --------------------------------------------------------~~i~lSAT~~~~~~~~~~~~~~~~ 219 (400)
T 1s2m_A 196 --------------------------------------------------------QSLLFSATFPLTVKEFMVKHLHKP 219 (400)
T ss_dssp --------------------------------------------------------EEEEEESCCCHHHHHHHHHHCSSC
T ss_pred --------------------------------------------------------eEEEEEecCCHHHHHHHHHHcCCC
Confidence 2334555554433332 2233322
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
+..................+.....|...+...+.. ..+.++||||++++.++.+++.|++.|+++..+|+++...++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 297 (400)
T 1s2m_A 220 YEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 297 (400)
T ss_dssp EEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHH
T ss_pred eEEEeccccccCCceeEEEEechhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHH
Confidence 221111000000001112234556677766555543 356799999999999999999999999999999998666565
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+-. +.| ...|.|||+++++|+||.
T Consensus 298 ~~~~~~f~~g-~~~vLv~T~~~~~Gidip 325 (400)
T 1s2m_A 298 NKVFHEFRQG-KVRTLVCSDLLTRGIDIQ 325 (400)
T ss_dssp HHHHHHHHTT-SSSEEEESSCSSSSCCCT
T ss_pred HHHHHHHhcC-CCcEEEEcCccccCCCcc
Confidence 544444 455 568999999999999994
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=239.75 Aligned_cols=271 Identities=17% Similarity=0.167 Sum_probs=187.4
Q ss_pred CCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.|+|.|..+...+++|+ ++.+.||+|||+++.+|+.-... .|..|.|++|+..|+.+-++++..++...+++++.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 107 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 58999999999988773 88999999999999999873322 37789999999999999999999999999999999
Q ss_pred EcCCCCHHH-HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC
Q 005155 77 IQRGMIPEE-RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (711)
Q Consensus 77 i~~~~~~~~-r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~ 155 (711)
+.++.+... ......++|+++|++.| ++.+. .. ....+ .++++||||||.++ +..
T Consensus 108 ~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~----~~--~~~~~---~~~~iIiDEah~~~-~~~------------- 163 (367)
T 1hv8_A 108 IYGGKAIYPQIKALKNANIVVGTPGRI-LDHIN----RG--TLNLK---NVKYFILDEADEML-NMG------------- 163 (367)
T ss_dssp ECTTSCHHHHHHHHHTCSEEEECHHHH-HHHHH----TT--CSCTT---SCCEEEEETHHHHH-TTT-------------
T ss_pred EECCcchHHHHhhcCCCCEEEecHHHH-HHHHH----cC--Ccccc---cCCEEEEeCchHhh-hhc-------------
Confidence 998877433 23334789999999876 33332 21 12234 78999999999985 211
Q ss_pred ccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCC
Q 005155 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNG 235 (711)
Q Consensus 156 ~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~ 235 (711)
++..+..+...+.+ .
T Consensus 164 --~~~~~~~~~~~~~~---------~------------------------------------------------------ 178 (367)
T 1hv8_A 164 --FIKDVEKILNACNK---------D------------------------------------------------------ 178 (367)
T ss_dssp --THHHHHHHHHTSCS---------S------------------------------------------------------
T ss_pred --hHHHHHHHHHhCCC---------C------------------------------------------------------
Confidence 12222222222211 0
Q ss_pred eEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEE
Q 005155 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIE 315 (711)
Q Consensus 236 ~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~ 315 (711)
.++.+||+|...+..++..-|--+...
T Consensus 179 -----------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~ 205 (367)
T 1hv8_A 179 -----------------------------------------------------KRILLFSATMPREILNLAKKYMGDYSF 205 (367)
T ss_dssp -----------------------------------------------------CEEEEECSSCCHHHHHHHHHHCCSEEE
T ss_pred -----------------------------------------------------ceEEEEeeccCHHHHHHHHHHcCCCeE
Confidence 123456666655443333322222222
Q ss_pred eCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHH
Q 005155 316 VPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAE 395 (711)
Q Consensus 316 IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~ 395 (711)
++...+. .-....+.....+|+.++.+.+. ..+.++||||++++.++.+++.|++.|+++..+|++....+++..
T Consensus 206 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 280 (367)
T 1hv8_A 206 IKAKINA--NIEQSYVEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKV 280 (367)
T ss_dssp EECCSSS--SSEEEEEECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHH
T ss_pred EEecCCC--CceEEEEEeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 2221111 00012233456678887776664 577899999999999999999999999999999998666666544
Q ss_pred HHH-hcCCCccEEEEcCCCcCCccee
Q 005155 396 TVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 396 Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+-. +.| ...|.|||+++++|+||.
T Consensus 281 ~~~f~~~-~~~vlv~T~~~~~Gid~~ 305 (367)
T 1hv8_A 281 IRLFKQK-KIRILIATDVMSRGIDVN 305 (367)
T ss_dssp HHHHHTT-SSSEEEECTTHHHHCCCS
T ss_pred HHHHHcC-CCeEEEECChhhcCCCcc
Confidence 444 455 568999999999999994
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=241.23 Aligned_cols=274 Identities=20% Similarity=0.173 Sum_probs=188.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|.|..+...+++|+ ++.+.||.|||+++.+|+. ..+. +..|.|++|+..|+.+-++++..+...+ ++++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 108 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 108 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH-HHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH-HhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 48999999999998877 9999999999999999997 4442 5689999999999999999999998887 8999
Q ss_pred EEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCC
Q 005155 75 GLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (711)
Q Consensus 75 ~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~ 151 (711)
+.+.++.+....... ..++|+++|++.| .++++. . ....+ .+.++||||||.++-+.
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~----~--~~~~~---~~~~vViDEaH~~~~~~---------- 168 (391)
T 1xti_A 109 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARN----K--SLNLK---HIKHFILDECDKMLEQL---------- 168 (391)
T ss_dssp EEECTTSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHT----T--SSCCT---TCSEEEECSHHHHTSSH----------
T ss_pred EEEeCCCCHHHHHHHHhcCCCCEEEECHHHH-HHHHHc----C--Ccccc---ccCEEEEeCHHHHhhcc----------
Confidence 999998875444322 3479999999876 233322 1 12234 79999999999985211
Q ss_pred CCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceE
Q 005155 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (711)
Q Consensus 152 ~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYi 231 (711)
.....+..+...+.. .
T Consensus 169 -----~~~~~~~~~~~~~~~---------~-------------------------------------------------- 184 (391)
T 1xti_A 169 -----DMRRDVQEIFRMTPH---------E-------------------------------------------------- 184 (391)
T ss_dssp -----HHHHHHHHHHHTSCS---------S--------------------------------------------------
T ss_pred -----chHHHHHHHHhhCCC---------C--------------------------------------------------
Confidence 011111111111100 0
Q ss_pred EeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHH-HHcC
Q 005155 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL-KMFQ 310 (711)
Q Consensus 232 V~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~-~iY~ 310 (711)
.++.+||+|......++. ..++
T Consensus 185 ---------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~ 207 (391)
T 1xti_A 185 ---------------------------------------------------------KQVMMFSATLSKEIRPVCRKFMQ 207 (391)
T ss_dssp ---------------------------------------------------------SEEEEEESSCCSTHHHHHHHHCS
T ss_pred ---------------------------------------------------------ceEEEEEeeCCHHHHHHHHHHcC
Confidence 124566777665544433 3333
Q ss_pred CCe-EEeCCCCCcccccC-CCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc
Q 005155 311 MPV-IEVPTNLPNIRVDL-PIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (711)
Q Consensus 311 l~v-v~IPt~~p~~R~d~-~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~ 388 (711)
-++ +.++...+...... ...+......|...+.+.+... .+.++||||++++.++.+++.|.+.|+++..+|+++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 285 (391)
T 1xti_A 208 DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP 285 (391)
T ss_dssp SCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 332 22332221111111 1223345567777777666543 6789999999999999999999999999999999866
Q ss_pred chHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
..+++..+-. +.| ...|.|||+++++|+||.
T Consensus 286 ~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 286 QEERLSRYQQFKDF-QRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHHHHHHTT-CCSEEEESCCCSSCBCCT
T ss_pred HHHHHHHHHHHhcC-CCcEEEECChhhcCCCcc
Confidence 6666554444 455 568999999999999994
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=237.14 Aligned_cols=272 Identities=17% Similarity=0.225 Sum_probs=185.4
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+|+|..+...+++| + |+.+.||.|||+++.+|++ ..+ .+..|.|++|+..|+.+-++++..+..+.++.
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML-TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH-HHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCee
Confidence 5899999999999876 4 9999999999999999997 444 46789999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+....++... +.....++|+++|++.| ++.++.. ..... .++++||||||.++-+..
T Consensus 106 ~~~~~~~~~~--~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~---~~~~iIiDEah~~~~~~~----------- 162 (395)
T 3pey_A 106 SQLIVPDSFE--KNKQINAQVIVGTPGTV-LDLMRRK------LMQLQ---KIKIFVLDEADNMLDQQG----------- 162 (395)
T ss_dssp EEEESTTSSC--TTSCBCCSEEEECHHHH-HHHHHTT------CBCCT---TCCEEEEETHHHHHHSTT-----------
T ss_pred EEEEecCchh--hhccCCCCEEEEcHHHH-HHHHHcC------Ccccc---cCCEEEEEChhhhcCccc-----------
Confidence 9988876432 22345789999999887 3444321 12234 799999999999863221
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
....+..+...+.
T Consensus 163 ----~~~~~~~~~~~~~--------------------------------------------------------------- 175 (395)
T 3pey_A 163 ----LGDQCIRVKRFLP--------------------------------------------------------------- 175 (395)
T ss_dssp ----HHHHHHHHHHTSC---------------------------------------------------------------
T ss_pred ----cHHHHHHHHHhCC---------------------------------------------------------------
Confidence 0111111111110
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
.-.++.+||+|......++.+.+..+.
T Consensus 176 -----------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 202 (395)
T 3pey_A 176 -----------------------------------------------------KDTQLVLFSATFADAVRQYAKKIVPNA 202 (395)
T ss_dssp -----------------------------------------------------TTCEEEEEESCCCHHHHHHHHHHSCSC
T ss_pred -----------------------------------------------------CCcEEEEEEecCCHHHHHHHHHhCCCC
Confidence 001355777777665455444333322
Q ss_pred EEeCCCCCcccccCCCeEE---eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcch
Q 005155 314 IEVPTNLPNIRVDLPIQSF---ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~---~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~ 390 (711)
..+...............+ .....|...+...+ .. ..+.++||||++++.++.+++.|++.|+++..+|+++...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 280 (395)
T 3pey_A 203 NTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY-GL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQ 280 (395)
T ss_dssp EEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH-TT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred eEEEccccccccccccEEEEEcCchHHHHHHHHHHH-Hh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHH
Confidence 2222211111111111111 13445555444333 32 3567999999999999999999999999999999987666
Q ss_pred HhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 391 ~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++..+-. +.| ...|.|||+++++|+||.
T Consensus 281 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 281 ERDRLIDDFREG-RSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHHHHTT-SCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHHCC-CCCEEEECChhhcCCCcc
Confidence 66655544 455 567999999999999994
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=242.59 Aligned_cols=273 Identities=15% Similarity=0.151 Sum_probs=180.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+++|..++..+++|+ |+.+.||+|||+++.+|++ ..+ .+..+.|++|+..||.+-++++..+...+|+.++
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL-QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEE
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHH-HHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEE
Confidence 58999999999999887 9999999999999999997 444 5678999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHh---ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 76 LIQRGMIPEERRS---NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 76 ~i~~~~~~~~r~~---aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
...++.+...... .-.++|+|+|++.| ++.|... ....+ .+.++||||||.++ +..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~------~~~~~---~~~~vViDEah~~~-~~~---------- 199 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRV-FDMLNRR------YLSPK---YIKMFVLDEADEML-SRG---------- 199 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHH-HHHHHHT------SSCST---TCCEEEECSHHHHH-HTT----------
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccccc---cCcEEEEECHHHhh-ccC----------
Confidence 9998877443322 25679999999887 4554332 12233 78999999999985 321
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
+...+..+...+.+ .
T Consensus 200 -----~~~~~~~~~~~~~~---------~--------------------------------------------------- 214 (414)
T 3eiq_A 200 -----FKDQIYDIFQKLNS---------N--------------------------------------------------- 214 (414)
T ss_dssp -----THHHHHHHHTTSCT---------T---------------------------------------------------
T ss_pred -----cHHHHHHHHHhCCC---------C---------------------------------------------------
Confidence 11112121111110 0
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
.++.+||+|......++.+.|-.+
T Consensus 215 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 238 (414)
T 3eiq_A 215 --------------------------------------------------------TQVVLLSATMPSDVLEVTKKFMRD 238 (414)
T ss_dssp --------------------------------------------------------CEEEEECSCCCHHHHHHHTTTCSS
T ss_pred --------------------------------------------------------CeEEEEEEecCHHHHHHHHHHcCC
Confidence 134566777665555444433322
Q ss_pred eEEeCC-CCCcccccCCC-eEEe-ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 VIEVPT-NLPNIRVDLPI-QSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 vv~IPt-~~p~~R~d~~d-~i~~-t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
...+.. ........... .+.. ....|...+.+.+.. ..+.++||||++++.++.+++.|.+.|+.+..+|+++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~ 316 (414)
T 3eiq_A 239 PIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET--LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQ 316 (414)
T ss_dssp CEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS--SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHH
T ss_pred CEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh--CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCH
Confidence 222211 11111111111 1112 223356655544433 255689999999999999999999999999999998655
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+++..+-. +.| ...|.|||+++++|+||.
T Consensus 317 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 317 KERDVIMREFRSG-SSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHHHSCC----CEEECSSCC--CCGG
T ss_pred HHHHHHHHHHHcC-CCcEEEECCccccCCCcc
Confidence 555544444 344 457999999999999994
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-25 Score=249.46 Aligned_cols=284 Identities=15% Similarity=0.176 Sum_probs=186.3
Q ss_pred CCchhHHHHHHHHh--CCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------CEEEEecCHHHHHHHHHHHHHHhhh-
Q 005155 2 RHFDVQIIGGAVLH--DGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVVTVNDYLAQRDAEWMERVHRF- 69 (711)
Q Consensus 2 rp~dvQl~g~~~L~--~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-------~VhVvT~NdyLA~RDae~~~~~y~~- 69 (711)
.|+|+|..++..++ +|+ |+.+.||+|||++|++|++-..+.++ .|.|++|+..||.|.++.+..++..
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~ 173 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 173 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 58999999999888 455 99999999999999999985555544 7999999999999999999998653
Q ss_pred ---cCCeEEEEcCCCCHHHHH---hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 70 ---LGLSVGLIQRGMIPEERR---SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 70 ---LGLtv~~i~~~~~~~~r~---~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
-++.+..+.++.+..... ....+||+++|++.| +++|... .....+ .+.++||||||.|+ |.++
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~---~~~~lViDEah~l~-~~~f 243 (563)
T 3i5x_A 174 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFR---FVDYKVLDEADRLL-EIGF 243 (563)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCT---TCCEEEEETHHHHT-STTT
T ss_pred cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHH-HHHHHhc-----cccccc---cceEEEEeCHHHHh-ccch
Confidence 356788888887643222 245789999999987 5555432 112344 79999999999986 4322
Q ss_pred CceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHH
Q 005155 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (711)
Q Consensus 144 tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l 223 (711)
. +.+..+...+...... ....
T Consensus 244 ~---------------~~~~~i~~~l~~~~~~--~~~~------------------------------------------ 264 (563)
T 3i5x_A 244 R---------------DDLETISGILNEKNSK--SADN------------------------------------------ 264 (563)
T ss_dssp H---------------HHHHHHHHHHHHHCSS--CTTC------------------------------------------
T ss_pred H---------------HHHHHHHHhhhhcccc--CccC------------------------------------------
Confidence 2 2233332222110000 0000
Q ss_pred hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHH
Q 005155 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (711)
Q Consensus 224 ~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~ 303 (711)
.++.+||+|+.....
T Consensus 265 -----------------------------------------------------------------~~~l~~SAT~~~~v~ 279 (563)
T 3i5x_A 265 -----------------------------------------------------------------IKTLLFSATLDDKVQ 279 (563)
T ss_dssp -----------------------------------------------------------------CEEEEEESSCCTHHH
T ss_pred -----------------------------------------------------------------ceEEEEEccCCHHHH
Confidence 124566666665544
Q ss_pred HHHHHc-CCC-eEEe---CCCCCcccccCCCeE-E-eChhHHHHHHHHHHHHh---hhcCCcEEEEecchhhHHHHHHHH
Q 005155 304 EFLKMF-QMP-VIEV---PTNLPNIRVDLPIQS-F-ATARGKWEYARQEVESM---FRLGRPVLVGSTSVENSEYLSDLL 373 (711)
Q Consensus 304 Ef~~iY-~l~-vv~I---Pt~~p~~R~d~~d~i-~-~t~~~K~~aIi~ei~~~---~~~grPVLV~t~Si~~SE~Ls~~L 373 (711)
++...+ +.+ .+.+ +...+.........+ . .....+....+..+... ...+.++||||+|...++.++..|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L 359 (563)
T 3i5x_A 280 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 359 (563)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 443322 222 1222 112222111111111 1 12234444444444333 256789999999999999999999
Q ss_pred HHC---CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 374 KQQ---GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 374 ~~~---gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++. |+++..+|+++.+.+|+..+-. +.| ...|.|||++++||+||.
T Consensus 360 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~GiDip 409 (563)
T 3i5x_A 360 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFP 409 (563)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCT
T ss_pred HHhccCCceEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEcchhhcCCCcc
Confidence 987 9999999998777777655544 556 567999999999999995
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=231.51 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=102.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|++- .|..+.|++|+..|+.+-++++..+...++++++.+.+
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG 92 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC
Confidence 58999999999998877 99999999999999999863 38899999999999999999999999999999999999
Q ss_pred CCCHHHH-HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r-~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.... .....++|+++|++.| .+++.. . ....+ .++++|+||||.++
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~iViDEah~~~ 142 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRL-LDLWSK----G--VIDLS---SFEIVIIDEADLMF 142 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHH-HHHHHT----T--SCCGG---GCSEEEEESHHHHH
T ss_pred CcchHHHHhhcCCCCEEEECHHHH-HHHHHc----C--Ccchh---hCcEEEEEChHHhh
Confidence 8875443 3345689999999876 233222 1 11234 78999999999985
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-25 Score=248.08 Aligned_cols=284 Identities=15% Similarity=0.178 Sum_probs=184.8
Q ss_pred CCchhHHHHHHHHh--CCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------CEEEEecCHHHHHHHHHHHHHHhh--
Q 005155 2 RHFDVQIIGGAVLH--DGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVVTVNDYLAQRDAEWMERVHR-- 68 (711)
Q Consensus 2 rp~dvQl~g~~~L~--~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-------~VhVvT~NdyLA~RDae~~~~~y~-- 68 (711)
.|+|+|..++..++ +|+ |+++.||+|||++|++|++-..+.++ .|.||+|+..||.|.++++..++.
T Consensus 43 ~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~ 122 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 122 (579)
T ss_dssp SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhc
Confidence 48999999999888 555 99999999999999999986555543 799999999999999999999874
Q ss_pred --hcCCeEEEEcCCCCHHHHH---hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 69 --FLGLSVGLIQRGMIPEERR---SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 69 --~LGLtv~~i~~~~~~~~r~---~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
.-.+.+..+.++.+..... ....+||+++|++.| .+.|... .....+ .+.++||||||.|+ |.++
T Consensus 123 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~---~~~~lViDEah~l~-~~gf 192 (579)
T 3sqw_A 123 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFR---FVDYKVLDEADRLL-EIGF 192 (579)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCT---TCCEEEEETHHHHT-STTT
T ss_pred ccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH-HHHHHhc-----cccccc---cCCEEEEEChHHhh-cCCC
Confidence 3457788888887643322 235789999999987 4555432 122345 79999999999986 4322
Q ss_pred CceeccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHH
Q 005155 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (711)
Q Consensus 144 tPLiiSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l 223 (711)
. +.+..+...+...... ....
T Consensus 193 ~---------------~~~~~i~~~l~~~~~~--~~~~------------------------------------------ 213 (579)
T 3sqw_A 193 R---------------DDLETISGILNEKNSK--SADN------------------------------------------ 213 (579)
T ss_dssp H---------------HHHHHHHHHHHHHCSS--CTTC------------------------------------------
T ss_pred H---------------HHHHHHHHHhhhhhcc--cccC------------------------------------------
Confidence 1 2222332222110000 0000
Q ss_pred hccCcceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHH
Q 005155 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (711)
Q Consensus 224 ~~~d~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~ 303 (711)
.++.+||+|+.....
T Consensus 214 -----------------------------------------------------------------~~~l~~SAT~~~~v~ 228 (579)
T 3sqw_A 214 -----------------------------------------------------------------IKTLLFSATLDDKVQ 228 (579)
T ss_dssp -----------------------------------------------------------------CEEEEEESSCCTHHH
T ss_pred -----------------------------------------------------------------ceEEEEeccCChHHH
Confidence 124456666655444
Q ss_pred HHHHHc-CCCe-EEeC---CCCCcccccCCC-eEEe-ChhHHHHHHHHHHHHhh---hcCCcEEEEecchhhHHHHHHHH
Q 005155 304 EFLKMF-QMPV-IEVP---TNLPNIRVDLPI-QSFA-TARGKWEYARQEVESMF---RLGRPVLVGSTSVENSEYLSDLL 373 (711)
Q Consensus 304 Ef~~iY-~l~v-v~IP---t~~p~~R~d~~d-~i~~-t~~~K~~aIi~ei~~~~---~~grPVLV~t~Si~~SE~Ls~~L 373 (711)
++...+ +.+. +.+. ...+........ .+.. ....+....++.+.... ..+.++||||+|+..++.+++.|
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L 308 (579)
T 3sqw_A 229 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 308 (579)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHH
Confidence 433322 2221 2221 111211111111 1122 22333334444443322 45789999999999999999999
Q ss_pred HHC---CCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 374 KQQ---GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 374 ~~~---gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
++. |+++..+|+++.+.+++..+-. +.| ...|.|||++++||+||.
T Consensus 309 ~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g-~~~vLVaT~~~~~GiDip 358 (579)
T 3sqw_A 309 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFP 358 (579)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCT
T ss_pred HHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC-CCeEEEEcchhhcCCCcc
Confidence 987 9999999998777777655544 556 567999999999999994
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=239.65 Aligned_cols=124 Identities=21% Similarity=0.194 Sum_probs=102.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|+....-.|..|.|++|+..||.+.++.+..+.. +|++++.+.+
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g 99 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYS 99 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEEC
Confidence 58999999999999987 99999999999988888764444788999999999999999999999888 9999999999
Q ss_pred CCCHHHHH-----hccC-CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERR-----SNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~-----~aY~-~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+..++. ...+ +||+++|++.| .+.+. . .... .+.++||||||.++
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l-~~~l~----~----~~~~---~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 100 SMKKEEKEKFEKSFEEDDYHILVFSTQFV-SKNRE----K----LSQK---RFDFVFVDDVDAVL 152 (414)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEEEHHHH-HHCHH----H----HTTC---CCSEEEESCHHHHH
T ss_pred CCChhhHHHHHHHhhcCCCCEEEECHHHH-HHHHH----H----hccc---cccEEEEeChHhhh
Confidence 98874432 2233 89999999877 23332 1 2233 79999999999875
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=229.82 Aligned_cols=274 Identities=16% Similarity=0.184 Sum_probs=182.3
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GL 72 (711)
.|+|+|..+...+++| + |+.+.||.|||++|.+|++ ..+. +..|.|++|+..||.+-++++..+...+ ++
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 125 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML-SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHH-HHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc
Confidence 5899999999999876 4 9999999999999999997 4442 2379999999999999999999998876 78
Q ss_pred eEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 73 SVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 73 tv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
.++...++.... +.....++|+++|++.| .++++. . ...... .++++||||||.++-+...
T Consensus 126 ~~~~~~~~~~~~-~~~~~~~~ivv~T~~~l-~~~~~~----~-~~~~~~---~~~~iViDEah~~~~~~~~--------- 186 (412)
T 3fht_A 126 KLAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWCSK----L-KFIDPK---KIKVFVLDEADVMIATQGH--------- 186 (412)
T ss_dssp CEEEECTTCCCC-TTCCCCCSEEEECHHHH-HHHHTT----S-CSSCGG---GCCEEEEETHHHHHSTTTT---------
T ss_pred eEEEeecCcchh-hhhcCCCCEEEECchHH-HHHHHh----c-CCcChh---hCcEEEEeCHHHHhhcCCc---------
Confidence 898887765422 22345679999999877 333322 1 112233 7999999999998632211
Q ss_pred CCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEE
Q 005155 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
......+...+.. ..
T Consensus 187 ------~~~~~~~~~~~~~---------~~-------------------------------------------------- 201 (412)
T 3fht_A 187 ------QDQSIRIQRMLPR---------NC-------------------------------------------------- 201 (412)
T ss_dssp ------HHHHHHHHHTSCT---------TC--------------------------------------------------
T ss_pred ------HHHHHHHHhhCCC---------Cc--------------------------------------------------
Confidence 1112222222211 11
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~ 312 (711)
++.+||+|......++...+-.+
T Consensus 202 ---------------------------------------------------------~~i~~SAT~~~~~~~~~~~~~~~ 224 (412)
T 3fht_A 202 ---------------------------------------------------------QMLLFSATFEDSVWKFAQKVVPD 224 (412)
T ss_dssp ---------------------------------------------------------EEEEEESCCCHHHHHHHHHHSSS
T ss_pred ---------------------------------------------------------eEEEEEeecCHHHHHHHHHhcCC
Confidence 23455555554443333322222
Q ss_pred eEEeCCCCCc-ccccC-CCeEE-eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 VIEVPTNLPN-IRVDL-PIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 vv~IPt~~p~-~R~d~-~d~i~-~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
...+...... ..... ...+. .....|...+.+.+.. ..+.++||||++++.++.+++.|.+.|+++..+|+++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 302 (412)
T 3fht_A 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMV 302 (412)
T ss_dssp CEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred CeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCH
Confidence 1111111100 00000 01111 2345677776666554 356799999999999999999999999999999998766
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+++..+-. +.| ...|.|||++++||+||.
T Consensus 303 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 303 EQRAAVIERFREG-KEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHTT-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHHCC-CCcEEEEcCccccCCCcc
Confidence 666654444 555 567999999999999994
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=250.37 Aligned_cols=270 Identities=20% Similarity=0.206 Sum_probs=186.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..++..+++|+ |+.|.||.|||++|.+|++. .+..+.||+|+..|+.+..+.+..+ |++++.+.+
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~ 116 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNA 116 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeC
Confidence 47899999999999988 99999999999999999973 4568999999999999888877764 999999999
Q ss_pred CCCHHHHHh--------ccCCCeEEECCCchhh-HHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcC--CCceec
Q 005155 80 GMIPEERRS--------NYRCDITYTNNSELGF-DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG--RNPLLI 148 (711)
Q Consensus 80 ~~~~~~r~~--------aY~~DI~YgT~~elgf-DyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea--~tPLii 148 (711)
+++..++.. .-.++|+|+|+..|.- ..+.+.+.. ..... .+.++||||||.|+ +.+ +.|
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~---~~~~~---~i~~iViDEAH~is-~~g~dfr~--- 186 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK---AYEAR---RFTRIAVDEVHCCS-QWGHDFRP--- 186 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---HHHTT---CEEEEEEETGGGGS-TTCTTCCG---
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh---hhhcc---CCcEEEEECccccc-ccccccHH---
Confidence 988766543 2367999999987732 123333321 12234 78999999999985 221 111
Q ss_pred cCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc
Q 005155 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~ 228 (711)
.|..+. .+ ...+. +
T Consensus 187 ---------~~~~l~-----------------------------------------------------~l--~~~~~-~- 200 (591)
T 2v1x_A 187 ---------DYKALG-----------------------------------------------------IL--KRQFP-N- 200 (591)
T ss_dssp ---------GGGGGG-----------------------------------------------------HH--HHHCT-T-
T ss_pred ---------HHHHHH-----------------------------------------------------HH--HHhCC-C-
Confidence 000000 00 00000 0
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHH-HHHHH
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLK 307 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~-~Ef~~ 307 (711)
..+.+||+|+.... +.+.+
T Consensus 201 ------------------------------------------------------------~~ii~lSAT~~~~v~~~i~~ 220 (591)
T 2v1x_A 201 ------------------------------------------------------------ASLIGLTATATNHVLTDAQK 220 (591)
T ss_dssp ------------------------------------------------------------SEEEEEESSCCHHHHHHHHH
T ss_pred ------------------------------------------------------------CcEEEEecCCCHHHHHHHHH
Confidence 12557888887643 44555
Q ss_pred HcCCC--eEE-eCCCCCcccccCCCeEEe---ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 005155 308 MFQMP--VIE-VPTNLPNIRVDLPIQSFA---TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (711)
Q Consensus 308 iY~l~--vv~-IPt~~p~~R~d~~d~i~~---t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~ 381 (711)
..+++ ++. -+.++|..+. .+.. ...+++..+++.+... ..+.++||||.|.+.++.+++.|.+.|+.+.
T Consensus 221 ~l~~~~~~~~~~~~~r~nl~~----~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~ 295 (591)
T 2v1x_A 221 ILCIEKCFTFTASFNRPNLYY----EVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAG 295 (591)
T ss_dssp HTTCCSCEEEECCCCCTTEEE----EEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred HhCCCCcEEEecCCCCcccEE----EEEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 56554 222 2223333221 1111 1344555666555433 2678999999999999999999999999999
Q ss_pred EEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 382 VLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 382 vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+++...+|+..+-. ..| ...|.|||+++|+|+|+.
T Consensus 296 ~~h~~l~~~~R~~~~~~F~~g-~~~VlVAT~a~~~GID~p 334 (591)
T 2v1x_A 296 AYHANLEPEDKTTVHRKWSAN-EIQVVVATVAFGMGIDKP 334 (591)
T ss_dssp EECTTSCHHHHHHHHHHHHTT-SSSEEEECTTSCTTCCCS
T ss_pred EecCCCCHHHHHHHHHHHHcC-CCeEEEEechhhcCCCcc
Confidence 99998777666655544 455 568999999999999994
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=244.45 Aligned_cols=266 Identities=18% Similarity=0.201 Sum_probs=186.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|.-++..+++|+ ++.|.||.|||++|.+|+++ .+..+.||+|+..|+.+..+.+.. +|+.+..+.+
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~----~gi~~~~l~~ 97 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQA----NGVAAACLNS 97 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHH----TTCCEEEECT
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHHHHHHHH----cCCcEEEEeC
Confidence 47899999999999988 99999999999999999973 355689999999999988887765 5999999998
Q ss_pred CCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 80 GMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 80 ~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+.+..++... -.++|+|+|+..|..+...+.+. .. ++.++||||||.+. +.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~-------~~---~~~~vViDEaH~i~-~~g~---------- 156 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA-------HW---NPVLLAVDEAHCIS-QWGH---------- 156 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT-------TS---CEEEEEESSGGGGC-TTSS----------
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh-------hC---CCCEEEEeCccccC-cCCC----------
Confidence 8876554332 24799999998874332222221 23 78999999999984 2110
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
+|. +. ...+.. + ...+.
T Consensus 157 --------------------~fr-----------------------------~~---~~~l~~-l--~~~~~-------- 173 (523)
T 1oyw_A 157 --------------------DFR-----------------------------PE---YAALGQ-L--RQRFP-------- 173 (523)
T ss_dssp --------------------CCC-----------------------------HH---HHGGGG-H--HHHCT--------
T ss_pred --------------------ccH-----------------------------HH---HHHHHH-H--HHhCC--------
Confidence 000 00 000000 0 00000
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccH-HHHHHHHcCCC
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te-~~Ef~~iY~l~ 312 (711)
-..+.+||+|+... .+++.+..++.
T Consensus 174 ------------------------------------------------------~~~~i~lSAT~~~~~~~~i~~~l~~~ 199 (523)
T 1oyw_A 174 ------------------------------------------------------TLPFMALTATADDTTRQDIVRLLGLN 199 (523)
T ss_dssp ------------------------------------------------------TSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred ------------------------------------------------------CCCEEEEeCCCCHHHHHHHHHHhCCC
Confidence 01356889999765 35677766653
Q ss_pred --eEEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcc
Q 005155 313 --VIEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (711)
Q Consensus 313 --vv~IPt-~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~ 389 (711)
.+.+++ ++|..+ ........+...+++.+.. ..+.++||||+|.+.++.+++.|.+.|+++..+|+++..
T Consensus 200 ~~~~~~~~~~r~~l~-----~~v~~~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~ 272 (523)
T 1oyw_A 200 DPLIQISSFDRPNIR-----YMLMEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLEN 272 (523)
T ss_dssp SCEEEECCCCCTTEE-----EEEEECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCeEEeCCCCCCceE-----EEEEeCCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCH
Confidence 344433 333322 1122335567777777765 378899999999999999999999999999999998776
Q ss_pred hHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.+|+..+-. +.| ...|.|||+++|+|+|+.
T Consensus 273 ~~R~~~~~~f~~g-~~~vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 273 NVRADVQEKFQRD-DLQIVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHHHHHHTT-SCSEEEECTTSCTTTCCT
T ss_pred HHHHHHHHHHHcC-CCeEEEEechhhCCCCcc
Confidence 666655544 455 578999999999999994
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-25 Score=233.95 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=103.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|++ ..+ .+..|.|++|+..|+.+-++++..++..+|++++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 121 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEE
Confidence 58999999999998876 9999999999999999997 444 4668999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHh-ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERRS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~~-aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+.++.+..+... .-.++|+++|++.| ++.+.. . ..... .+.++||||||.++
T Consensus 122 ~~~g~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 122 ACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQR----R--RFRTD---KIKMFILDEADEML 175 (394)
T ss_dssp EECSSCCHHHHHHHHHHCSEEEECHHHH-HHHHHT----T--SSCCT---TCCEEEEETHHHHH
T ss_pred EEeCCCchHHHHhhcCCCCEEEECHHHH-HHHHHh----C--Ccchh---hCcEEEEEChHHhh
Confidence 9999887544332 23789999999876 333322 1 12233 78999999999975
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=224.80 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=97.4
Q ss_pred CCchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..+...+.+|. |+.+.||.|||+++.+|+..... .+..|.||+|+..|+.+-++++..++...+.+++.+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g 88 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTG 88 (494)
T ss_dssp CCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECS
T ss_pred CccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeC
Confidence 58999999999888766 99999999999999999863222 58899999999999998777766655333349999999
Q ss_pred CCCHHHHHhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+...+...+ .++|+++|++.|.-+ +... ..... .++++||||||.+.
T Consensus 89 ~~~~~~~~~~~~~~~ivv~T~~~l~~~-----~~~~--~~~~~---~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 89 EKSPEERSKAWARAKVIVATPQTIEND-----LLAG--RISLE---DVSLIVFDEAHRAV 138 (494)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHH-----HHTT--SCCTT---SCSEEEEETGGGCS
T ss_pred CcchhhhhhhccCCCEEEecHHHHHHH-----HhcC--Ccchh---hceEEEEECCcccC
Confidence 98876655443 689999999776322 2211 12233 78999999999975
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-23 Score=229.58 Aligned_cols=128 Identities=19% Similarity=0.150 Sum_probs=100.2
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+.|+|+|..++..+++|+ |+.+.||.|||++|.+|+.-.... +..|.|++|+..|+.+-++.+..++..+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 469999999999998876 999999999999999999744343 7789999999999999999999999999999
Q ss_pred EEEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhh
Q 005155 74 VGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 74 v~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+.++.+... +.....+||+++|++.| .+.+. .. .. ... .++++||||||.+.
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~----~~--~~~~~~---~~~~vViDEah~~~ 143 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DG--TLTSLS---IFTLMIFDECHNTT 143 (556)
T ss_dssp EEECCCC-----CHHHHHHHCSEEEECHHHH-HHHHH----SS--SCCCST---TCSEEEEETGGGCS
T ss_pred EEEEeCCCCcchhHHHhhCCCCEEEECHHHH-HHHHH----hC--cccccc---cCCEEEEECCcccC
Confidence 999999875433 22334689999999886 33332 21 11 233 78999999999985
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=238.90 Aligned_cols=277 Identities=17% Similarity=0.213 Sum_probs=111.6
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL~G~---~VhVvT~NdyLA~RDae~~~~~y~~L-GLt 73 (711)
+|+|+|..+...++.| + |+.+.||+|||++|.+|++-....+. .|.|++|+..||.+.++++..+..++ ++.
T Consensus 114 ~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 193 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (479)
T ss_dssp SCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCce
Confidence 6899999999999986 4 99999999999999999973333333 79999999999999999999998875 788
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
+++..++... .+.....++|++||++.+ .++|.. . .....+ .+.++||||+|.++-+.+
T Consensus 194 ~~~~~~~~~~-~~~~~~~~~Ivv~Tp~~l-~~~l~~----~-~~~~~~---~~~~iViDEah~~~~~~~----------- 252 (479)
T 3fmp_B 194 LAYAVRGNKL-ERGQKISEQIVIGTPGTV-LDWCSK----L-KFIDPK---KIKVFVLDEADVMIATQG----------- 252 (479)
T ss_dssp EEEESTTCCC-CTTCCCCCSEEEECHHHH-HHHHTT----S-CCCCGG---GCCEEEECCHHHHHTSTT-----------
T ss_pred EEEEeCCccc-cccccCCCCEEEECchHH-HHHHHh----c-CCcCcc---cCCEEEEECHHHHhhcCC-----------
Confidence 8887776432 123356789999999887 444422 1 112234 799999999999863221
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEe
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 233 (711)
.......+...+.. ..++. +++++.+ ..+... +..++ .+..++.
T Consensus 253 ----~~~~~~~i~~~~~~---------~~~~i-----------------~~SAT~~--~~~~~~--~~~~~-~~~~~i~- 296 (479)
T 3fmp_B 253 ----HQDQSIRIQRMLPR---------NCQML-----------------LFSATFE--DSVWKF--AQKVV-PDPNVIK- 296 (479)
T ss_dssp ----HHHHHHHHHTTSCT---------TSEEE-----------------EEESCCC--HHHHHH--HHHHS-SSEEEEE-
T ss_pred ----cHHHHHHHHhhCCc---------cceEE-----------------EEeCCCC--HHHHHH--HHHHc-CCCeEEe-
Confidence 11223333333321 23333 3444431 111111 12222 1111110
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCe
Q 005155 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (711)
Q Consensus 234 d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (711)
+.. +..+...+
T Consensus 297 ------~~~-----------------------------~~~~~~~~---------------------------------- 307 (479)
T 3fmp_B 297 ------LKR-----------------------------EEETLDTI---------------------------------- 307 (479)
T ss_dssp ------EC------------------------------------------------------------------------
T ss_pred ------ccc-----------------------------cccCcCCc----------------------------------
Confidence 000 00000000
Q ss_pred EEeCCCCCcccccCCCeEE-eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHh
Q 005155 314 IEVPTNLPNIRVDLPIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (711)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~-~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~ 392 (711)
....++ .....|+..+...+.. ..+.++||||+|+..++.++..|...|+.+.++|+++...+|
T Consensus 308 -------------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R 372 (479)
T 3fmp_B 308 -------------KQYYVLCSSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQR 372 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------eEEEEEeCCHHHHHHHHHHHHhh--ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHH
Confidence 000111 1123455555555443 245689999999999999999999999999999998666666
Q ss_pred HHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+..+-. +.| ...|.|||++++||+||.
T Consensus 373 ~~~~~~f~~g-~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 373 AAVIERFREG-KEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHcC-CCcEEEEccccccCCccc
Confidence 544433 444 457999999999999995
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=223.37 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
+.|+|.|..++..+++|+ |+.+.||.|||++|.+|+.-.... +..|.|++|+..|+.+-++.+..++..+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 479999999999998877 999999999999999999744443 7789999999999999999999999999999
Q ss_pred EEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 74 VGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 74 v~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+.++.+...+ ...-.+||+++|++.| .+.+.. .. ..... .++++||||||.++
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~~-~~~~~---~~~~vViDEah~~~ 140 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQIL-VNNLNN----GA-IPSLS---VFTLMIFDECHNTS 140 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHH-HHHHHT----SS-SCCGG---GCSEEEETTGGGCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHH-HHHHhc----Cc-ccccc---cCCEEEEECccccC
Confidence 9999998754332 2334589999999887 333322 11 00233 78999999999985
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=237.54 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=94.9
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC------CCEEEEecCHHHHHHH-HHHHHHHhhhcC
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRD-AEWMERVHRFLG 71 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G------~~VhVvT~NdyLA~RD-ae~~~~~y~~LG 71 (711)
+.|+|.|..++..+++|+ |+.+.||.|||+++.+|+......+ ..|.||+|+..|+.+- .+++..++.. +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 468999999999999876 9999999999999999996433332 7899999999999999 8888887765 5
Q ss_pred CeEEEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcc----hhhhhcCCCCCccEEEeechhhh
Q 005155 72 LSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAAN----SEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 72 Ltv~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~----~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++++.+.++.+..+ +...-.+||+|+|++.| .+.+... ....... .+.++||||||.+
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L-----~~~l~~~~~~~~~~~~~~---~~~lvViDEaH~~ 148 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-----ENSLLNLENGEDAGVQLS---DFSLIIIDECHHT 148 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHH-----HHHTC--------CCCGG---GCSEEEEESGGGC
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHH-----HHHHhccccccccceecc---cCcEEEEECcccc
Confidence 89999998865332 33345789999999887 2322211 1112233 7899999999987
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=228.48 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=101.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|.|..++..+++|+ |+.+.||.|||++|.+|+.-.... +..|.||+|+..|+.+-.+.+..++..+|+++
T Consensus 248 ~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (797)
T 4a2q_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (797)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceE
Confidence 58999999999998877 999999999999999999744444 77899999999999999999999999999999
Q ss_pred EEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.++.+... +...-.+||+++|++.| .+.++ .. .. ... .++++||||||.+.
T Consensus 328 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~----~~--~~~~~~---~~~~iViDEaH~~~ 384 (797)
T 4a2q_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DG--TLTSLS---IFTLMIFDECHNTT 384 (797)
T ss_dssp EEECCC-----CHHHHHHTCSEEEECHHHH-HHHHH----SS--SCCCGG---GCSEEEETTGGGCS
T ss_pred EEEeCCcchhhhHHHhhCCCCEEEEchHHH-HHHHH----hc--cccccc---cCCEEEEECccccC
Confidence 99999876443 23345789999999887 33332 21 11 233 78999999999975
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=234.21 Aligned_cols=262 Identities=15% Similarity=0.219 Sum_probs=179.1
Q ss_pred CCchhHHHHHHHHhC--------CCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHD--------GSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~--------G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|++.|..++..+.+ ..|++..||+|||++|.+|++.....|.+|.|++|+..||.|-++.+..++..+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~ 447 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIH 447 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCce
Confidence 578999999887765 349999999999999999998555679999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
|++++++++..+++..+ .+||++||++.| .+. .... ++.++||||+|.+-.+. +
T Consensus 448 v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------~~~~---~l~lVVIDEaHr~g~~q-r---- 507 (780)
T 1gm5_A 448 VALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI-----QED-------VHFK---NLGLVIIDEQHRFGVKQ-R---- 507 (780)
T ss_dssp EEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH-----HHC-------CCCS---CCCEEEEESCCCC----------
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hhh-------hhcc---CCceEEecccchhhHHH-H----
Confidence 99999999877765433 489999999754 332 2234 78999999999852110 0
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
.. +.. . ..
T Consensus 508 -----------------------------------~~------------------l~~-~-----------------~~- 515 (780)
T 1gm5_A 508 -----------------------------------EA------------------LMN-K-----------------GK- 515 (780)
T ss_dssp -----------------------------------CC------------------CCS-S-----------------SS-
T ss_pred -----------------------------------HH------------------HHH-h-----------------CC-
Confidence 00 000 0 00
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
-.++.+||+|.....-.+.
T Consensus 516 ------------------------------------------------------------~~~vL~mSATp~p~tl~~~- 534 (780)
T 1gm5_A 516 ------------------------------------------------------------MVDTLVMSATPIPRSMALA- 534 (780)
T ss_dssp ------------------------------------------------------------CCCEEEEESSCCCHHHHHH-
T ss_pred ------------------------------------------------------------CCCEEEEeCCCCHHHHHHH-
Confidence 0124566777644332222
Q ss_pred HcC-CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhh--------HHHHHHHHHH---
Q 005155 308 MFQ-MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVEN--------SEYLSDLLKQ--- 375 (711)
Q Consensus 308 iY~-l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~--------SE~Ls~~L~~--- 375 (711)
.|+ +++..|... |..|. |...+.....+...+.+.+.+....|+.++|||++++. ++.+++.|++
T Consensus 535 ~~g~~~~s~i~~~-p~~r~--~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~ 611 (780)
T 1gm5_A 535 FYGDLDVTVIDEM-PPGRK--EVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF 611 (780)
T ss_dssp HTCCSSCEEECCC-CSSCC--CCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC
T ss_pred HhCCcceeeeecc-CCCCc--ceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc
Confidence 233 344443211 11111 11122222234455667777666789999999998765 4667788887
Q ss_pred CCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 376 QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 376 ~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
.++.+..+|+++...++++.+-+ +.| ...|.|||+++++|+||.
T Consensus 612 ~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 612 PEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp ---CBCCCCSSSCCSCSHHHHHHHTTT-SSSBCCCSSCCCSCSCCT
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEECCCCCccccCC
Confidence 47888899998777778766665 445 568999999999999994
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-21 Score=231.68 Aligned_cols=261 Identities=17% Similarity=0.124 Sum_probs=180.3
Q ss_pred CCchhHHHHHHHHhC----CC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLHD----GS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~----G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|+|.|..++..+++ |+ |+++.||.|||++|++|++.....|++|.|++|+..||.|-++.+...+..++++
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~ 682 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 682 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCe
Confidence 478999999997765 54 9999999999999999998777789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhc------cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCcee
Q 005155 74 VGLIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (711)
Q Consensus 74 v~~i~~~~~~~~r~~a------Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLi 147 (711)
++.+.+..+..+++.. -.+||++||+.- |... .... .+.++||||+|.+-.
T Consensus 683 v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~l-----l~~~-------~~~~---~l~lvIiDEaH~~g~-------- 739 (1151)
T 2eyq_A 683 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL-----LQSD-------VKFK---DLGLLIVDEEHRFGV-------- 739 (1151)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH-----HHSC-------CCCS---SEEEEEEESGGGSCH--------
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH-----HhCC-------cccc---ccceEEEechHhcCh--------
Confidence 9999888776554322 258999999843 3321 2234 899999999999410
Q ss_pred ccCCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccC
Q 005155 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (711)
Q Consensus 148 iSg~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d 227 (711)
.....+..+.. .
T Consensus 740 -------------~~~~~l~~l~~---------~---------------------------------------------- 751 (1151)
T 2eyq_A 740 -------------RHKERIKAMRA---------N---------------------------------------------- 751 (1151)
T ss_dssp -------------HHHHHHHHHHT---------T----------------------------------------------
T ss_pred -------------HHHHHHHHhcC---------C----------------------------------------------
Confidence 00111111110 0
Q ss_pred cceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHH
Q 005155 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (711)
Q Consensus 228 ~dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~ 307 (711)
..+.+||+|.....-.+.
T Consensus 752 -------------------------------------------------------------~~vl~lSATp~p~~l~~~- 769 (1151)
T 2eyq_A 752 -------------------------------------------------------------VDILTLTATPIPRTLNMA- 769 (1151)
T ss_dssp -------------------------------------------------------------SEEEEEESSCCCHHHHHH-
T ss_pred -------------------------------------------------------------CCEEEEcCCCChhhHHHH-
Confidence 013455555543222211
Q ss_pred HcCC-CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEEe
Q 005155 308 MFQM-PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLN 384 (711)
Q Consensus 308 iY~l-~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vLn 384 (711)
.+++ +...|.+ .|..|......+..... ..+.+.+.+....|.+|+|||++++.++.+++.|++. ++.+.++|
T Consensus 770 ~~~~~~~~~i~~-~~~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lh 845 (1151)
T 2eyq_A 770 MSGMRDLSIIAT-PPARRLAVKTFVREYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 845 (1151)
T ss_dssp HTTTSEEEECCC-CCCBCBCEEEEEEECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECC
T ss_pred HhcCCCceEEec-CCCCccccEEEEecCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 2222 2222222 12223222222222221 2334444455567899999999999999999999998 88899999
Q ss_pred CCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 385 A~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+++...+++..+.. ..| ...|.|||+++++|+||.
T Consensus 846 g~~~~~eR~~il~~F~~g-~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 846 GQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp SSCCHHHHHHHHHHHHTT-SCCEEEESSTTGGGSCCT
T ss_pred CCCCHHHHHHHHHHHHcC-CCcEEEECCcceeeeccc
Confidence 98777777766655 455 568999999999999995
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=224.76 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=99.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++-....|..+.+++|+..||.+-++.+. -+..+|++|+..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~-~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK-KWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT-TTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH-HHHhcCCEEEEEeC
Confidence 57899999999988877 9999999999999999997544568899999999999999999885 34556999999999
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+....++.. -.++|+|+|++.+ ...++. . ....+ .+.++||||||.+.
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l-~~~l~~----~--~~~l~---~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKA-DSLIRN----R--ASWIK---AVSCLVVDEIHLLD 151 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHH-HHHHHT----T--CSGGG---GCCEEEETTGGGGG
T ss_pred CCCcchhhc-cCCCEEEECHHHH-HHHHHc----C--hhHHh---hcCEEEEeeeeecC
Confidence 876443322 3789999999886 223332 1 12244 78999999999874
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=218.51 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=98.5
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|+|+|..+... +++|+ |+.+.||+|||+++.+|++-..+ .|..+.+++|+..||.+-++.+. -+..+|++|+..
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~-~~~~~g~~v~~~ 108 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK-DWELIGFKVAMT 108 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG-GGGGGTCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH-HhhcCCCEEEEE
Confidence 578999999998 66666 99999999999999999974434 58899999999999999999885 445579999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+|+....++.. -.++|+|+|++.+ ...++. . ...++ ++.++||||||.+.
T Consensus 109 ~G~~~~~~~~~-~~~~Iiv~Tpe~l-~~~~~~----~--~~~l~---~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 109 SGDYDTDDAWL-KNYDIIITTYEKL-DSLWRH----R--PEWLN---EVNYFVLDELHYLN 158 (715)
T ss_dssp CSCSSSCCGGG-GGCSEEEECHHHH-HHHHHH----C--CGGGG---GEEEEEECSGGGGG
T ss_pred eCCCCCchhhc-CCCCEEEEcHHHH-HHHHhC----C--hhHhh---ccCEEEEechhhcC
Confidence 99876544433 3789999999886 223332 1 12244 78999999999964
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=228.72 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|.|..++..+++|+ |+.+.||.|||+++.+|+.-.... +..|.||+|+..|+.+-++.+..++..+|+++
T Consensus 248 ~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (936)
T 4a2w_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (936)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceE
Confidence 68999999999998887 999999999999999998633233 77899999999999999999999999999999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.++.+...+ ...-.+||+++|++.| .+.+. ... ..... .++++||||||.+.
T Consensus 328 ~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L-~~~l~----~~~-~~~l~---~~~liViDEaH~~~ 384 (936)
T 4a2w_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DGT-LTSLS---IFTLMIFDECHNTT 384 (936)
T ss_dssp EEECCC-----CCHHHHHHCSEEEECHHHH-HHHHH----SSS-CCCGG---GCSEEEEETGGGCS
T ss_pred EEEECCcchhhHHHHhccCCCEEEecHHHH-HHHHH----cCc-ccccc---CCCEEEEECccccC
Confidence 999998764432 2234689999999887 33332 211 11234 78999999999975
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-21 Score=220.37 Aligned_cols=127 Identities=18% Similarity=0.116 Sum_probs=100.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-----CCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.|+|.|..++..+++|+ |+.+.||.|||++|.+|+.-....+ ..+.|++|+..|+.+-.+.+..++..+|+++
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 92 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRV 92 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCE
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceE
Confidence 68999999999998876 9999999999999999997333332 6799999999999999999999998899999
Q ss_pred EEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhh-hcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDs~L 138 (711)
+.+.++.+.. .+...-.+||+|+|++.| .+.|. .. .. ... .+.++||||||.+.
T Consensus 93 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L-~~~l~----~~--~~~~l~---~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 93 TGISGATAENVPVEQIVENNDIIILTPQIL-VNNLK----KG--TIPSLS---IFTLMIFDECHNTS 149 (696)
T ss_dssp EEECSSSCSSSCHHHHHHTCSEEEECHHHH-HHHHH----TT--SSCCGG---GCSEEEEETGGGCS
T ss_pred EEEeCCccccccHHHhccCCCEEEECHHHH-HHHHh----cC--cccccc---cccEEEEeCCCccc
Confidence 9999986532 222334689999999887 33332 21 11 233 78999999999985
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=217.11 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=98.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|+|.|..++..+.+|+ |+.+.||.|||+++++|+......++ +|.|++|+..|+.+-.+.+..+..+.+++++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 58899999999877654 99999999999999998874333566 8999999999999999999888777778999998
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+..++ ..-.++|+++|++.+. ++ .....+ .+.++||||+|.+.
T Consensus 193 ~~~~~~~~-~~~~~~I~i~T~~~l~----~~------~~~~~~---~~~liIiDE~H~~~ 238 (510)
T 2oca_A 193 GGASKDDK-YKNDAPVVVGTWQTVV----KQ------PKEWFS---QFGMMMNDECHLAT 238 (510)
T ss_dssp GGCCTTGG-GCTTCSEEEEEHHHHT----TS------CGGGGG---GEEEEEEETGGGCC
T ss_pred cCCccccc-cccCCcEEEEeHHHHh----hc------hhhhhh---cCCEEEEECCcCCC
Confidence 88765433 4466899999987541 11 112334 78999999999974
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=221.47 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=98.3
Q ss_pred CCchhHHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|+|+|..+... +++|+ |+.+.||+|||+++.+|++-..+ .|..|.+++|+..||.+-++.+..+ ..+|++|+..
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l-~~~g~~v~~~ 101 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDW-EKIGLRVAMA 101 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGG-GGGTCCEEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHH-HhcCCEEEEe
Confidence 588999999997 77777 99999999999999999974444 5889999999999999999998644 4469999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++.+...+. .-.++|+|+|++.+ ...++. . ....+ .+.++||||||.+.
T Consensus 102 ~G~~~~~~~~-~~~~~Iiv~Tpe~l-~~~~~~----~--~~~l~---~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 102 TGDYDSKDEW-LGKYDIIIATAEKF-DSLLRH----G--SSWIK---DVKILVADEIHLIG 151 (720)
T ss_dssp CSCSSCCCGG-GGGCSEEEECHHHH-HHHHHH----T--CTTGG---GEEEEEEETGGGGG
T ss_pred cCCCCccccc-cCCCCEEEECHHHH-HHHHHc----C--hhhhh---cCCEEEEECCcccC
Confidence 9987654432 33789999999876 222322 1 12234 78999999999874
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=218.63 Aligned_cols=125 Identities=21% Similarity=0.192 Sum_probs=97.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|.-++..+.+|+ |+.+.||.|||+++.+|+....-.|..+.|++|+..||.+-++.+..++. |++++.+.+
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G 116 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITG 116 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeC
Confidence 47889999999999988 99999999999999999875555678899999999999998888877654 899999998
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCC
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~t 144 (711)
+.+. .-.++|+|+|++.| ++.+... ....+ .+.++||||||.++ |..+.
T Consensus 117 ~~~~-----~~~~~IlV~Tpe~L-----~~~l~~~--~~~l~---~l~lvViDEaH~l~-d~~~g 165 (997)
T 4a4z_A 117 DVQI-----NPDANCLIMTTEIL-----RSMLYRG--ADLIR---DVEFVIFDEVHYVN-DQDRG 165 (997)
T ss_dssp SCEE-----CTTSSEEEEEHHHH-----HHHHHHT--CSGGG---GEEEEEECCTTCCC-TTCTT
T ss_pred CCcc-----CCCCCEEEECHHHH-----HHHHHhC--chhhc---CCCEEEEECccccc-ccchH
Confidence 8642 23479999999877 3333222 12344 79999999999875 55443
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=221.00 Aligned_cols=118 Identities=21% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++..+++|+ |+.+.||+|||++|.+|++.....|..|.|++|+..||.|-+..+..++. .|+++.+
T Consensus 184 ~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltG 259 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTG 259 (1108)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeC
Confidence 57899999999999988 99999999999999999986556788999999999999998888877665 7888888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++. .-.++|+|+|++.| ++.+.... ..++ .+.++||||||.|+
T Consensus 260 d~~~-----~~~~~IlV~Tpe~L-----~~~L~~~~--~~l~---~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 260 DITI-----NPDAGCLVMTTEIL-----RSMLYRGS--EVMR---EVAWVIFDEVHYMR 303 (1108)
T ss_dssp SCBC-----CCSCSEEEEEHHHH-----HHHHHHCS--SHHH---HEEEEEEETGGGTT
T ss_pred cccc-----CCCCCEEEeChHHH-----HHHHHcCc--cccc---cCCEEEEhhhhhcc
Confidence 8652 23589999999876 44443321 2345 79999999999985
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=229.03 Aligned_cols=120 Identities=23% Similarity=0.275 Sum_probs=100.6
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC----eEE
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL----SVG 75 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL----tv~ 75 (711)
| ++|..++..+++|+ |+.+.||+|||+ +++|+....+ .|..+.|++|+..||.|.++.+..++..+|+ +++
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~ 135 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 135 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEE
Confidence 7 99999999999987 999999999998 8888876554 5778999999999999999999999999999 999
Q ss_pred EEcCCCCHHHH----HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEER----RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r----~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++|+.+...+ ...-.+||+++|++.| .+.+.. ++ .+.++||||||.|+
T Consensus 136 ~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L-----~~~l~~------L~---~l~~lViDEah~~l 188 (1054)
T 1gku_B 136 YYHGRIPKREKENFMQNLRNFKIVITTTQFL-----SKHYRE------LG---HFDFIFVDDVDAIL 188 (1054)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHHH-----HHCSTT------SC---CCSEEEESCHHHHH
T ss_pred EEeCCCChhhHHHHHhhccCCCEEEEcHHHH-----HHHHHH------hc---cCCEEEEeChhhhh
Confidence 99999875443 1112389999999876 343321 44 78999999999987
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=222.86 Aligned_cols=124 Identities=21% Similarity=0.181 Sum_probs=100.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|+|..++..+++|+ |+.+.||+|||+++.+|+......|..|.|++|+..||.|.++.+..|. ..|++|+++.+
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~G 156 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYS 156 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeC
Confidence 68999999999999987 9999999999997766665434478899999999999999999999966 88999999999
Q ss_pred CCCHHHH-----Hhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEER-----RSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r-----~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++..++ +..- .+||+++|++.| .|++. . ...+ .+.++||||||.++
T Consensus 157 g~~~~er~~~~~~l~~g~~~IlV~Tp~rL-~~~l~----~----l~~~---~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 157 SMKKEEKEKFEKSFEEDDYHILVFSTQFV-SKNRE----K----LSQK---RFDFVFVDDVDAVL 209 (1104)
T ss_dssp TCCTTHHHHHHHHHHTSCCSEEEEEHHHH-HHSHH----H----HHTS---CCSEEEESCHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEECHHHH-HHHHH----h----hccc---CcCEEEEeCCCccc
Confidence 9875332 2223 389999999887 34332 1 2234 89999999998765
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-22 Score=219.85 Aligned_cols=110 Identities=22% Similarity=0.108 Sum_probs=87.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe-EEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS-VGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt-v~~i~ 78 (711)
.|+|.|..+...+.+++ |+.+.||.|||+++.+|+.. + |+.|.|++|+..|+.+-++.+.. ||++ ++.+.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~--~-~~~~Lvl~P~~~L~~Q~~~~~~~----~~~~~v~~~~ 165 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE--L-STPTLIVVPTLALAEQWKERLGI----FGEEYVGEFS 165 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHH--H-CSCEEEEESSHHHHHHHHHHGGG----GCGGGEEEBS
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHH--c-CCCEEEEECCHHHHHHHHHHHHh----CCCcceEEEC
Confidence 58999999999888766 99999999999999998863 2 88999999999999986665554 5999 99888
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+. .++|+++|.+.+ ...+. .... .+.++||||+|.+.
T Consensus 166 g~~~~-------~~~Ivv~T~~~l-----~~~~~-----~~~~---~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 166 GRIKE-------LKPLTVSTYDSA-----YVNAE-----KLGN---RFMLLIFDEVHHLP 205 (472)
T ss_dssp SSCBC-------CCSEEEEEHHHH-----HHTHH-----HHTT---TCSEEEEETGGGTT
T ss_pred CCcCC-------cCCEEEEEcHHH-----HHHHH-----HhcC---CCCEEEEECCcCCC
Confidence 87642 579999998654 22221 1223 68999999999975
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=213.66 Aligned_cols=120 Identities=21% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|+|.|..++..+.+|+ |+.+.||.|||++|.+|++...-.|..|.+++|+..||.+-++.+..+|. .|++++|
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltG 161 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTG 161 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeC
Confidence 58899999999999887 99999999999999988874444788999999999999998888887665 7888888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+.+. .-.++|+++|+..| ++.+... ....+ .+.++||||||.|. |.
T Consensus 162 d~~~-----~~~~~IvV~Tpe~L-----~~~L~~~--~~~l~---~l~lVViDEaH~l~-d~ 207 (1010)
T 2xgj_A 162 DITI-----NPDAGCLVMTTEIL-----RSMLYRG--SEVMR---EVAWVIFDEVHYMR-DK 207 (1010)
T ss_dssp SCEE-----CTTCSEEEEEHHHH-----HHHHHHT--CTTGG---GEEEEEEETGGGGG-CT
T ss_pred CCcc-----CCCCCEEEEcHHHH-----HHHHHcC--cchhh---cCCEEEEechhhhc-cc
Confidence 8643 12579999999765 4333322 23345 89999999999985 54
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=205.70 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 005155 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i 77 (711)
.|.|+|- .++.+++|+ |+.+.||+|||+++++|++..++ .|..+.|++|++.||.|-++.++ |++++..
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 76 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR------GLPIRYQ 76 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc------Cceeeee
Confidence 4778886 467777765 88999999999999999976555 57789999999999999888764 7777654
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...... ...-...|.++|++.+ .+++... ..+. ++.++||||||.+
T Consensus 77 ~~~~~~---~~~~~~~i~~~t~~~l-----~~~l~~~---~~l~---~~~~iViDEah~~ 122 (451)
T 2jlq_A 77 TPAVKS---DHTGREIVDLMCHATF-----TTRLLSS---TRVP---NYNLIVMDEAHFT 122 (451)
T ss_dssp CTTCSC---CCCSSCCEEEEEHHHH-----HHHHHHC---SCCC---CCSEEEEETTTCC
T ss_pred eccccc---cCCCCceEEEEChHHH-----HHHhhCc---cccc---CCCEEEEeCCccC
Confidence 433211 1223457888998665 2222211 2344 7999999999965
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=196.47 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=69.0
Q ss_pred HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhc
Q 005155 13 VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSN 89 (711)
Q Consensus 13 ~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~a 89 (711)
++.+|+ |+.+.||+|||++|.+|++-..+ .|..|.|++|++.||.+.++.+. |+++.......... ..
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~---~t 87 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE---HQ 87 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-----------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC---CC
Confidence 355666 88999999999999999985555 67899999999999999888775 77776544332210 11
Q ss_pred cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 90 YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 90 Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
-..-|.+.|.+.+ ...+... ..++ ++.++||||||.+
T Consensus 88 ~~~~i~~~~~~~l-----~~~l~~~---~~l~---~~~~iViDEaH~~ 124 (459)
T 2z83_A 88 GNEIVDVMCHATL-----THRLMSP---NRVP---NYNLFVMDEAHFT 124 (459)
T ss_dssp CCCSEEEEEHHHH-----HHHHHSC---C-CC---CCSEEEESSTTCC
T ss_pred CCcEEEEEchHHH-----HHHhhcc---cccc---CCcEEEEECCccC
Confidence 1223555555433 1112111 2244 8999999999973
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-20 Score=211.08 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|.|+|-.+..++++|+ |+.+.||+|||++|++|++...+ .|..+.|++|++.||.+.++.+. |+.++...
T Consensus 171 ~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------~~~v~~~~ 244 (618)
T 2whx_A 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------GLPIRYQT 244 (618)
T ss_dssp CCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEECC
T ss_pred cCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------CCceeEec
Confidence 46777776666778888 99999999999999999975544 46689999999999998887665 66666322
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.... ....-...|.+.|.+.+ ...+... ..+. .+.++||||||.+
T Consensus 245 ~~l~---~~~tp~~~i~~~t~~~l-----~~~l~~~---~~l~---~~~~iViDEah~~ 289 (618)
T 2whx_A 245 PAVK---SDHTGREIVDLMCHATF-----TTRLLSS---TRVP---NYNLIVMDEAHFT 289 (618)
T ss_dssp TTSS---CCCCSSSCEEEEEHHHH-----HHHHHHC---SSCC---CCSEEEEESTTCC
T ss_pred ccce---eccCCCceEEEEChHHH-----HHHHhcc---cccc---CCeEEEEECCCCC
Confidence 1110 00001112333333221 1111111 1244 8999999999997
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=197.03 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=76.3
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC
Q 005155 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR 91 (711)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~ 91 (711)
+.+|+ |+.+.||+|||+++.+|++ . .|.+|.|++|++.||.+.++.+ .+.+|.+++...++.. ....
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~l~ll-~--~g~~vLVl~PTReLA~Qia~~l---~~~~g~~vg~~vG~~~-----~~~~ 297 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVPAAYA-A--QGYKVLVLNPSVAATLGFGAYM---SKAHGIDPNIRTGVRT-----ITTG 297 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHHHH-H--TTCCEEEEESCHHHHHHHHHHH---HHHHSCCCEEECSSCE-----ECCC
T ss_pred HHcCCeEEEEeCCchhHHHHHHHHHH-H--CCCeEEEEcchHHHHHHHHHHH---HHHhCCCeeEEECcEe-----ccCC
Confidence 44555 8899999999999988875 2 5778999999999999988854 4566888888877743 3456
Q ss_pred CCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 92 CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 92 ~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
++|+|+|++.| +.+. ....+ ++.++||||||.
T Consensus 298 ~~IlV~TPGrL----l~~~------~l~l~---~l~~lVlDEAH~ 329 (666)
T 3o8b_A 298 APVTYSTYGKF----LADG------GCSGG---AYDIIICDECHS 329 (666)
T ss_dssp CSEEEEEHHHH----HHTT------SCCTT---SCSEEEETTTTC
T ss_pred CCEEEECcHHH----HhCC------CcccC---cccEEEEccchh
Confidence 89999999986 3321 22334 799999999964
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-17 Score=182.50 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=70.3
Q ss_pred CCchhHHHHHHHHhC----C-C--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLHD----G-S--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 2 rp~dvQl~g~~~L~~----G-~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
.|+|.|..++-.+.+ | + ++.|.||+|||++++.++....- .++.|.|++|+..|+.|-. ..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~---~~ 254 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK---DK 254 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH---HH
Confidence 477899999887653 3 2 89999999999997665542222 4589999999999999755 23
Q ss_pred HhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 66 VHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 66 ~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.|+.+|..++.+.++. ..-.++|+++|+..|. +.+...-. ....... .++++||||||.+.
T Consensus 255 ~~~~~~~~~~~~~~~~------~~~~~~I~v~T~~~l~-~~~~~~~~--~~~~~~~---~~~lvIiDEaH~~~ 315 (590)
T 3h1t_A 255 TFTPFGDARHKIEGGK------VVKSREIYFAIYQSIA-SDERRPGL--YKEFPQD---FFDLIIIDECHRGS 315 (590)
T ss_dssp CCTTTCSSEEECCC--------CCSSCSEEEEEGGGC-------CCG--GGGSCTT---SCSEEEESCCC---
T ss_pred HHHhcchhhhhhhccC------CCCCCcEEEEEhhhhc-cccccccc--cccCCCC---ccCEEEEECCcccc
Confidence 4556677777665432 2346799999999873 21211000 0011122 68999999999985
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=179.82 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=65.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEE
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYT 97 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~A-L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~Yg 97 (711)
|+.+.||+|||++|++|++-.+ -.|.+|.|++|+..||.|-++.++ |+++++..++++. ...-..-+.+.
T Consensus 6 lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---~~~~~~~~~~~ 76 (431)
T 2v6i_A 6 VLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---ERTGNEIVDFM 76 (431)
T ss_dssp EEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------------CCCSEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---cCCCCceEEEE
Confidence 8999999999999988887344 467799999999999998776654 7788866554332 11123345556
Q ss_pred CCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 98 T~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
|.+.+ ...+.. ....+ ++.++||||+|.+
T Consensus 77 ~~~~l-----~~~l~~---~~~~~---~l~~vViDEaH~~ 105 (431)
T 2v6i_A 77 CHSTF-----TMKLLQ---GVRVP---NYNLYIMDEAHFL 105 (431)
T ss_dssp EHHHH-----HHHHHH---TCCCC---CCSEEEEESTTCC
T ss_pred chHHH-----HHHHhc---Ccccc---CCCEEEEeCCccC
Confidence 65544 111111 12244 7999999999995
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=183.90 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=51.3
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCcceec
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIkL 421 (711)
.+.++||||+|++.++.+++.|++.|+++..+|+. +++..+-. +.| .-.|.|||++++||+||.+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g-~~~vLVaT~v~e~GiDipv 241 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQK-KPDFILATDIAEMGANLCV 241 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------C-CCSEEEESSSTTCCTTCCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCC-CceEEEECChhheeeccCc
Confidence 47899999999999999999999999999999983 23333333 445 5589999999999999973
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=197.20 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCchhHHHHHHHHh-CCC--eEEecCCCcHHHHHHHHHHHHH--H-c--CCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 2 RHFDVQIIGGAVLH-DGS--IAEMKTGEGKTLVSTLAAYLNA--L-T--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~-~G~--IaEm~TGEGKTLva~Lpa~l~A--L-~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.|.++|...++..+ +|. ++...||+|||+ .+|+++.. + . |..+.|++|++.||.+.++.+. ..+|++
T Consensus 93 lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~---~~~~~~ 167 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVA---EEMDVK 167 (773)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHH---HHTTCC
T ss_pred CChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHH---HHhCCc
Confidence 47889999998665 454 899999999999 45655322 2 2 5669999999999998887554 444544
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhh
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (711)
++..++.....+....-.++|+|+|++.+. +.+... ..+. ++.++||||+|.
T Consensus 168 v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~-----r~l~~~---~~l~---~~~~lIlDEah~ 219 (773)
T 2xau_A 168 LGEEVGYSIRFENKTSNKTILKYMTDGMLL-----REAMED---HDLS---RYSCIILDEAHE 219 (773)
T ss_dssp BTTTEEEEETTEEECCTTCSEEEEEHHHHH-----HHHHHS---TTCT---TEEEEEECSGGG
T ss_pred hhheecceeccccccCCCCCEEEECHHHHH-----HHHhhC---cccc---CCCEEEecCccc
Confidence 432222100001112236789999998872 222111 2344 799999999996
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=200.63 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=98.6
Q ss_pred CchhHHHHHHHHhC-CC--eEEecCCCcHHHHHHHHHHHHHHc------------CCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 3 HFDVQIIGGAVLHD-GS--IAEMKTGEGKTLVSTLAAYLNALT------------GEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 3 p~dvQl~g~~~L~~-G~--IaEm~TGEGKTLva~Lpa~l~AL~------------G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
+.++|-.+.+..++ ++ ++.+.||+|||++|.||++ ++|. |..|..|+|...||.+-+..++..|
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il-~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCML-REIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHH-HHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHH-HHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 45899999986553 44 9999999999999999985 7763 5679999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 68 RFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 68 ~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..+|++|+..+|+++... +..-.+||+++|+..+ |.|..+. .+....+ .+.++||||||.+
T Consensus 159 ~~~gi~V~~~tGd~~~~~-~~~~~~~IlVtTpEkl--d~llr~~---~~~~~l~---~v~~vIiDEvH~l 219 (1724)
T 4f92_B 159 ATYGITVAELTGDHQLCK-EEISATQIIVCTPEKW--DIITRKG---GERTYTQ---LVRLIILDEIHLL 219 (1724)
T ss_dssp TTTTCCEEECCSSCSSCC-TTGGGCSEEEECHHHH--HHHTTSS---TTHHHHT---TEEEEEETTGGGG
T ss_pred hhCCCEEEEEECCCCCCc-cccCCCCEEEECHHHH--HHHHcCC---ccchhhc---CcCEEEEecchhc
Confidence 999999999999876432 2345789999999874 4332211 1123455 7999999999943
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-18 Score=195.43 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=54.3
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCcceec
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIkL 421 (711)
.+.++||||++++.++.+++.|++.|+++..||++ +++..+-. +.| .-.|.||||+++||+||.+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLVaTdv~e~GIDipv 474 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGA 474 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEEECGGGGTTCCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEEECchhhcceeeCC
Confidence 57899999999999999999999999999999983 34433333 345 5589999999999999973
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-15 Score=179.78 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=72.5
Q ss_pred eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHH-CCCCeEEEeCCCcchHhHHHHHH-hcCC-CccEEEE
Q 005155 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ-QGIPHNVLNARPKYAAREAETVA-QAGR-KYAITIS 409 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~-~gi~~~vLnA~~~~~~~Ea~Iia-~AG~-~G~VTIA 409 (711)
.....|..++.+.+.. ..+..+||||+++..++.++..|.. .|+++..+|+++...+++..+-. +.|. .-.|.||
T Consensus 485 ~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp TTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred cCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3456788888877765 5788999999999999999999995 69999999999877788876666 5664 4689999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+++|+|+|+.
T Consensus 563 T~v~~~GlDl~ 573 (968)
T 3dmq_A 563 SEIGSEGRNFQ 573 (968)
T ss_dssp SCCTTCSSCCT
T ss_pred cchhhcCCCcc
Confidence 99999999995
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=168.35 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCC-CccEEEEcC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGR-KYAITISTN 411 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~-~G~VTIATn 411 (711)
...|..++.+.+.+....|.++||||.++..++.+...|.+. |+++..+++.+...+|+..+-. +.|. ...+.|+|+
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 356788888888777788999999999999999999999986 9999999998766666655544 4553 334899999
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
++|+|+|+.
T Consensus 403 ~~~~Glnl~ 411 (500)
T 1z63_A 403 AGGFGINLT 411 (500)
T ss_dssp CC-CCCCCT
T ss_pred cccCCCchh
Confidence 999999984
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-16 Score=193.22 Aligned_cols=125 Identities=17% Similarity=0.115 Sum_probs=97.6
Q ss_pred CchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHh-hhcCCeEE
Q 005155 3 HFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVG 75 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y-~~LGLtv~ 75 (711)
+.|+|-.+...++++. ++.+.||+|||++|-+|++ ++|. |..|.+++|+..||.+-+.++...| ..+|++|+
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail-~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~ 1005 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAIL-RMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVV 1005 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHH-HHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHH-HHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEE
Confidence 5689999999886543 8999999999999999996 6663 5679999999999999999887655 57999999
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..+|+.+...+ ..-.+||+++|++.+ |.|..+... ....+ .+.++|+||+|.+
T Consensus 1006 ~ltGd~~~~~~-~~~~~~IiV~TPEkl--d~llr~~~~---~~~l~---~v~lvViDE~H~l 1058 (1724)
T 4f92_B 1006 LLTGETSTDLK-LLGKGNIIISTPEKW--DILSRRWKQ---RKNVQ---NINLFVVDEVHLI 1058 (1724)
T ss_dssp ECCSCHHHHHH-HHHHCSEEEECHHHH--HHHHTTTTT---CHHHH---SCSEEEECCGGGG
T ss_pred EEECCCCcchh-hcCCCCEEEECHHHH--HHHHhCccc---ccccc---eeeEEEeechhhc
Confidence 99998765443 334689999999875 444332221 12344 7999999999965
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-16 Score=156.04 Aligned_cols=143 Identities=24% Similarity=0.256 Sum_probs=115.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL--------~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.|+++|..++..+++|+ ++.+.||+|||++|.+|++.... .|..+.|++|+..||.|-++++..+...+|
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 130 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR 130 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 58999999999999887 99999999999999999985544 266799999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
++++++.++.+..... ...++||+++|++.| .+++... ....+ .+.++||||||.++ |.+
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~l~-~~~------- 192 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL-IDFLECG------KTNLR---RTTYLVLDEADRML-DMG------- 192 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHT------SCCCT---TCCEEEETTHHHHH-HTT-------
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CCCcc---cccEEEEeCHHHHh-hhC-------
Confidence 9999999998755433 335689999999987 5555432 12234 78999999999986 443
Q ss_pred CCCCCCccchHHHHHHHHHcc
Q 005155 150 GEASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 193 --------~~~~~~~i~~~~~ 205 (242)
T 3fe2_A 193 --------FEPQIRKIVDQIR 205 (242)
T ss_dssp --------CHHHHHHHHTTSC
T ss_pred --------cHHHHHHHHHhCC
Confidence 3446666666664
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=156.39 Aligned_cols=144 Identities=22% Similarity=0.295 Sum_probs=114.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|+++|..+...+++|+ |+++.||+|||++|++|++-... .|..|.|++|+..||.+.++.+..++..+|+
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 155 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH 155 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCc
Confidence 38999999999999888 99999999999999999974433 4788999999999999999999999999999
Q ss_pred eEEEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccC
Q 005155 73 SVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (711)
Q Consensus 73 tv~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg 150 (711)
+++++.++.+.... ...-++||+++|++.+ .++++.. + ....+ .+.++||||||.|+ |.+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~~----~-~~~~~---~l~~lViDEah~l~-~~~-------- 217 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-LDHMQNT----P-GFMYK---NLQCLVIDEADRIL-DVG-------- 217 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHC----T-TCCCT---TCCEEEECSHHHHH-HTT--------
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHH-HHHHHcc----C-Ccccc---cCCEEEEcChHHHh-hhh--------
Confidence 99999998775433 2335689999999887 4444331 1 12234 78999999999986 443
Q ss_pred CCCCCccchHHHHHHHHHcc
Q 005155 151 EASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 151 ~~~~~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 218 -------~~~~l~~i~~~~~ 230 (262)
T 3ly5_A 218 -------FEEELKQIIKLLP 230 (262)
T ss_dssp -------CHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHhCC
Confidence 3346677777775
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=167.80 Aligned_cols=88 Identities=23% Similarity=0.256 Sum_probs=74.6
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.++.+..+|+.++.+.+... .+.++||||++++.++.++..|.+.|+++..||+++.+.+++..+.. +.| ...|+|
T Consensus 7 ~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLV 83 (300)
T 3i32_A 7 AVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLV 83 (300)
T ss_dssp EEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEE
T ss_pred EEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEE
Confidence 34566788999888777553 48899999999999999999999999999999998777777766665 445 678999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
|||+|+||+||.
T Consensus 84 aT~va~~Gidi~ 95 (300)
T 3i32_A 84 ATDVAARGLDIP 95 (300)
T ss_dssp ECSTTTCSTTCC
T ss_pred EechhhcCcccc
Confidence 999999999994
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=168.58 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=55.0
Q ss_pred CcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hc--CCCccEEEEcCCCcCCcceec
Q 005155 354 RPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QA--GRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 354 rPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~A--G~~G~VTIATnmAGRGTDIkL 421 (711)
..-+|||.|.+.++.+++.|.+.|+.+.++|+++...+|+..+.. +. | .-.|.||||+++||+||.+
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi~v 390 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNLSI 390 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCCCB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCcCc
Confidence 345888999999999999999999999999998766666655444 44 4 4589999999999999943
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-15 Score=148.24 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=102.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++...+ .|..|.|++|+..||.+.++.+..+....|+
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 58999999999998887 99999999999999999974332 4778999999999999999999999999999
Q ss_pred eEEEEcCCCCH-HHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 73 SVGLIQRGMIP-EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 73 tv~~i~~~~~~-~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++++.++.+. .+......+||+++|++.+ .+++.... ..... .+.++||||||.++
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~---~~~~lViDEah~~~ 184 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRL-LQHMDETV-----SFHAT---DLQMLVLDEADRIL 184 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHH-HHHHHHCS-----SCCCT---TCCEEEETTHHHHH
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHH-HHHHHhcC-----Ccccc---cccEEEEeChHHHh
Confidence 99999988653 3334446789999999887 34443210 12233 78999999999886
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-16 Score=154.00 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=74.1
Q ss_pred CeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEE
Q 005155 329 IQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAIT 407 (711)
Q Consensus 329 d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VT 407 (711)
..+.....+|+.++.+.+.. ..+.++||||+++..++.+++.|.+.|+++..+|+++.+.+++..+-. +.| ...|+
T Consensus 9 ~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vl 85 (212)
T 3eaq_A 9 EAVPAPVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVL 85 (212)
T ss_dssp EEEECCTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEE
T ss_pred eEEeCCHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEE
Confidence 34556678899988877754 468899999999999999999999999999999998777777665555 445 56799
Q ss_pred EEcCCCcCCccee
Q 005155 408 ISTNMAGRGTDII 420 (711)
Q Consensus 408 IATnmAGRGTDIk 420 (711)
||||+|+||+||.
T Consensus 86 vaT~~~~~Gidi~ 98 (212)
T 3eaq_A 86 VATDVAARGLDIP 98 (212)
T ss_dssp EECTTTTCSSSCC
T ss_pred EecChhhcCCCCc
Confidence 9999999999994
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-15 Score=145.20 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=106.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHHhhhc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---------~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (711)
.|+++|..++..+++|+ |+.+.||+|||++|.+|++.... .|..+.|++|+..||.|-++++..+. ..
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~ 120 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YK 120 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-cc
Confidence 68999999999999887 99999999999999999974332 56789999999999999999998875 56
Q ss_pred CCeEEEEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceec
Q 005155 71 GLSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (711)
Q Consensus 71 GLtv~~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLii 148 (711)
|+++.++.++.+... +...-++||+++|++.+ .+++... ....+ .+.++||||||.++ |.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~-~~~------ 183 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL-NDLQMNN------SVNLR---SITYLVIDEADKML-DME------ 183 (228)
T ss_dssp TCCEEEECC------CHHHHHSCCSEEEECHHHH-HHHHHTT------CCCCT---TCCEEEECCHHHHH-HTT------
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CcCcc---cceEEEEECHHHHh-ccc------
Confidence 899999988865432 22334689999999887 3333221 12244 79999999999986 432
Q ss_pred cCCCCCCccchHHHHHHHHHcc
Q 005155 149 SGEASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 149 Sg~~~~~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 184 ---------~~~~~~~i~~~~~ 196 (228)
T 3iuy_A 184 ---------FEPQIRKILLDVR 196 (228)
T ss_dssp ---------CHHHHHHHHHHSC
T ss_pred ---------hHHHHHHHHHhCC
Confidence 3446666766664
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=146.55 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=113.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.|+++|..+...+++|+ |+.+.||+|||+++.+|++...+. +..|.|++|++.||.+-++.+..+...+|+++++
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 58999999999999887 999999999999999999744443 3469999999999999999999999999999999
Q ss_pred EcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 77 IQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 77 i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
+.++.+.. .+.....+||+++|++.| .++|+. .+ ....+ .+.++||||||.++ |..
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~~-~~~l~---~~~~lViDEah~l~-~~~------------ 202 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRL-IDHLEN----TK-GFNLR---ALKYLVMDEADRIL-NMD------------ 202 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHH-HHHHHH----ST-TCCCT---TCCEEEECSHHHHH-HTT------------
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHc----CC-CcCcc---ccCEEEEcChhhhh-ccC------------
Confidence 99987743 333456889999999887 444432 11 12234 78999999999886 432
Q ss_pred CccchHHHHHHHHHcc
Q 005155 155 DVARYPVAAKVAELLV 170 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~ 170 (711)
+...+..+...+.
T Consensus 203 ---~~~~l~~i~~~~~ 215 (249)
T 3ber_A 203 ---FETEVDKILKVIP 215 (249)
T ss_dssp ---CHHHHHHHHHSSC
T ss_pred ---hHHHHHHHHHhCC
Confidence 3345666666664
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=143.83 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=111.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc----C
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL----G 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L----G 71 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++ ..+. +..+.|++|+..||.+-++++..+...+ +
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 104 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM-EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 104 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccc
Confidence 58999999999998877 9999999999999999997 4443 5689999999999999999999999888 8
Q ss_pred CeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~~a--Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
+.++++.++.+....... ..+||+++|++.+ .++++.. ..... .+.++||||||.++ +.+
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~~~-~~~------- 166 (219)
T 1q0u_A 105 IVARCLIGGTDKQKALEKLNVQPHIVIGTPGRI-NDFIREQ------ALDVH---TAHILVVDEADLML-DMG------- 166 (219)
T ss_dssp CCEEEECCCSHHHHTTCCCSSCCSEEEECHHHH-HHHHHTT------CCCGG---GCCEEEECSHHHHH-HTT-------
T ss_pred eEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHH-HHHHHcC------CCCcC---cceEEEEcCchHHh-hhC-------
Confidence 999999988765443333 3679999999887 3444321 12234 78999999999986 322
Q ss_pred CCCCCCccchHHHHHHHHHcc
Q 005155 150 GEASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~ 170 (711)
++..+..+...+.
T Consensus 167 --------~~~~l~~i~~~~~ 179 (219)
T 1q0u_A 167 --------FITDVDQIAARMP 179 (219)
T ss_dssp --------CHHHHHHHHHTSC
T ss_pred --------hHHHHHHHHHhCC
Confidence 3456667776664
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=155.02 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=101.6
Q ss_pred CCchhHHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 005155 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLt 73 (711)
+|+++|..+++.++.| + |+.+.||+|||++|++|++-.... +..+.|++|++.||.|.++.+..+..++ +++
T Consensus 114 ~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~ 193 (300)
T 3fmo_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (300)
T ss_dssp SCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcE
Confidence 6999999999999987 4 999999999999999999733322 3369999999999999999999998876 799
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+++..++.+.. +.....+||++||++.| .|+|.. . ...... .+.++||||||.|+
T Consensus 194 ~~~~~~~~~~~-~~~~~~~~IlV~TP~~l-~~~l~~----~-~~~~l~---~l~~lVlDEad~l~ 248 (300)
T 3fmo_B 194 LAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWCSK----L-KFIDPK---KIKVFVLDEADVMI 248 (300)
T ss_dssp EEEESTTCCCC-TTCCCCCSEEEECHHHH-HHHHTT----T-CCCCGG---GCSEEEETTHHHHH
T ss_pred EEEEeCCccHh-hhhcCCCCEEEECHHHH-HHHHHh----c-CCCChh---hceEEEEeCHHHHh
Confidence 99888875432 23357789999999987 454432 1 112234 78999999999997
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=145.68 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=98.1
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..++..+++|+ |+.+.||+|||++|++|++ ..+ .+..+.|++|+..||.+-++.+..+...+++++.
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL-QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEE
Confidence 48999999999999887 9999999999999999997 444 4678999999999999999999999999999999
Q ss_pred EEcCCCCHHHH--Hhcc-CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEER--RSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r--~~aY-~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...++.+.... .... .++|+++|++.+ ++++.... .... .+.++||||||.++
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~---~~~~lViDEah~~~ 186 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIVVGTPGRV-FDMLNRRY------LSPK---WIKMFVLDEADEML 186 (237)
T ss_dssp EECC-------------CCCSEEEECHHHH-HHHHHTTS------SCST---TCCEEEEESHHHHH
T ss_pred EEECCCchHHHHHHHhcCCCCEEEECHHHH-HHHHHhCC------cCcc---cCcEEEECCchHhh
Confidence 98887653322 2222 389999999887 45554321 1233 78999999999986
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=146.16 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=103.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------------CCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------------GEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------------G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
.|+|+|..++..+++|+ |+.+.||+|||+++++|++...+. |..|.|++|+..||.+.++.+..+.
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 58999999999999887 999999999999999999754442 3589999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 68 RFLGLSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 68 ~~LGLtv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...+++++++.++.+.. .+.....+||+++|++.| .+++... ....+ .+.++||||||.++
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~~~ 187 (253)
T 1wrb_A 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRL-VDFIEKN------KISLE---FCKYIVLDEADRML 187 (253)
T ss_dssp TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHH-HHHHHTT------SBCCT---TCCEEEEETHHHHH
T ss_pred ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHH-HHHHHcC------CCChh---hCCEEEEeCHHHHH
Confidence 99999999999887633 233445789999999887 4444321 12234 78999999999986
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=150.68 Aligned_cols=131 Identities=20% Similarity=0.321 Sum_probs=102.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|+|..++..+++|+ ++.+.||+|||++|.+|++.... .|..|.|++|+..||.+-++.+..++..+|+++.
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIH 130 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEE
Confidence 48999999999999887 99999999999999999974333 3557999999999999999999999999999998
Q ss_pred EEcCCCCHHHH---HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhh
Q 005155 76 LIQRGMIPEER---RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (711)
Q Consensus 76 ~i~~~~~~~~r---~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiD 140 (711)
.+.++.....+ .....+||+++|++.+ .++++. .......+ .+.++||||||.++-+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~~~~~~~~---~~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRL-IYLLKQ----DPPGIDLA---SVEWLVVDESDKLFED 190 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHH-HHHHHS----SSCSCCCT---TCCEEEESSHHHHHHH
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHH-HHHHHh----CCCCcccc---cCcEEEEeChHHhccc
Confidence 87665332221 1234679999999887 344432 21122344 7899999999999743
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=138.76 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=111.7
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|++ ..+ .+..+.|++|+..|+.+-++++..+...+ ++++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~-~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 103 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL-ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHH-HHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHH-HHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 58999999999999887 9999999999999999997 444 24579999999999999999999999888 8999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 75 ~~i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+...++.+.... .....+||+++|++.+ .+.+... ....+ .+.++||||||.++ |..
T Consensus 104 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~-~~~---------- 162 (206)
T 1vec_A 104 MATTGGTNLRDDIMRLDDTVHVVIATPGRI-LDLIKKG------VAKVD---HVQMIVLDEADKLL-SQD---------- 162 (206)
T ss_dssp EEECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEEETHHHHT-STT----------
T ss_pred EEEeCCccHHHHHHhcCCCCCEEEeCHHHH-HHHHHcC------CcCcc---cCCEEEEEChHHhH-hhC----------
Confidence 999998775433 3345689999999887 3444321 12234 78999999999986 321
Q ss_pred CCCccchHHHHHHHHHcc
Q 005155 153 SKDVARYPVAAKVAELLV 170 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~ 170 (711)
++..+..+...+.
T Consensus 163 -----~~~~l~~i~~~~~ 175 (206)
T 1vec_A 163 -----FVQIMEDIILTLP 175 (206)
T ss_dssp -----THHHHHHHHHHSC
T ss_pred -----cHHHHHHHHHhCC
Confidence 4456677777764
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=144.22 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=102.8
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|+|..+...+++|+ |+.+.||+|||+++++|+. ..+ .+..|.|++|+..||.|.++.+..+...+ ++++
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 124 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL-DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLEC 124 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceE
Confidence 48999999999999887 9999999999999999996 444 35689999999999999999999988766 9999
Q ss_pred EEEcCCCCHHHHH-hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~r~-~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++..++.+...+. ....+||+++|++.+ .++++.. ....+ .++++||||||.++
T Consensus 125 ~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~ 179 (230)
T 2oxc_A 125 HVFIGGTPLSQDKTRLKKCHIAVGSPGRI-KQLIELD------YLNPG---SIRLFILDEADKLL 179 (230)
T ss_dssp EEECTTSCHHHHHHHTTSCSEEEECHHHH-HHHHHTT------SSCGG---GCCEEEESSHHHHH
T ss_pred EEEeCCCCHHHHHHhccCCCEEEECHHHH-HHHHhcC------Ccccc---cCCEEEeCCchHhh
Confidence 9999988754433 345789999999887 3444321 12234 78899999999986
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.6e-13 Score=155.75 Aligned_cols=85 Identities=24% Similarity=0.269 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCc--cEEEEcCC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITISTNM 412 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G--~VTIATnm 412 (711)
..|+..+.+.+.+..+.|.+|||||......+.|...|...|+++..+++.+...+|++.|-. ++|..+ .+.|+|..
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 568888888888888899999999999999999999999999999999998766777766655 555555 59999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
+|.|+|+.
T Consensus 635 gg~GlNL~ 642 (800)
T 3mwy_W 635 GGLGINLM 642 (800)
T ss_dssp HTTTCCCT
T ss_pred ccCCCCcc
Confidence 99999984
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-12 Score=149.24 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=93.3
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV 358 (711)
.++..++..-.....+|.|......+. .-.++..+.. |... ..|.........+...++.++....+.|.+|||
T Consensus 371 l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r-~~~l-~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlV 444 (664)
T 1c4o_A 371 LRFEEFLERVSQVVFVSATPGPFELAH----SGRVVEQIIR-PTGL-LDPLVRVKPTENQILDLMEGIRERAARGERTLV 444 (664)
T ss_dssp CCHHHHHHTCSEEEEEESSCCHHHHHH----CSEEEEECSC-TTCC-CCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccHHHHHhhcCCEEEEecCCCHHHHHh----hhCeeeeeec-cCCC-CCCeEEEecccchHHHHHHHHHHHHhcCCEEEE
Confidence 345556665566788999987543222 1122222211 1111 112222334456777788888887788999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 359 ~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
||+|...++.|++.|.+.|+++..+|+++.+.+|+..+-. +.| .-.|+||||+++||+||.
T Consensus 445 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip 506 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIP 506 (664)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCT
T ss_pred EECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCC
Confidence 9999999999999999999999999998766666654443 456 457999999999999994
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-12 Score=148.52 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHhh-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCc--cEEEEc
Q 005155 335 ARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITIST 410 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~-~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G--~VTIAT 410 (711)
...|+..+...+.... ..+..|||||.+....+.|...|...|+++..+++.+...+|++.+-. +.|... .+.|+|
T Consensus 397 ~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 3456665433333322 358999999999999999999999999999999998766677765555 666544 489999
Q ss_pred CCCcCCccee
Q 005155 411 NMAGRGTDII 420 (711)
Q Consensus 411 nmAGRGTDIk 420 (711)
..+|+|+|+.
T Consensus 477 ~a~g~Glnl~ 486 (644)
T 1z3i_X 477 KAGGCGLNLI 486 (644)
T ss_dssp GGSCTTCCCT
T ss_pred ccccCCcccc
Confidence 9999999983
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-14 Score=137.53 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=98.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|..+...+.+|+ |+.+.||+|||+++++|++ ..+ .+..+.|++|+..||.+-++.+..+....|++++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 114 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 114 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH-HHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEE
Confidence 58999999999999887 9999999999999999997 444 3568999999999999999999999999999999
Q ss_pred EEcCCCCHHHHH-hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~-~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
...++.+..... ....+||+++|++.| ++++... ..... .+.++||||||.++
T Consensus 115 ~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~~------~~~~~---~~~~iViDEah~~~ 168 (224)
T 1qde_A 115 ACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQRR------RFRTD---KIKMFILDEADEML 168 (224)
T ss_dssp EECC----------CTTCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHH
T ss_pred EEeCCcchHHHHhcCCCCCEEEECHHHH-HHHHHhC------Ccchh---hCcEEEEcChhHHh
Confidence 999887644333 234589999999887 3444321 12233 78999999999986
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=138.53 Aligned_cols=127 Identities=22% Similarity=0.237 Sum_probs=102.2
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv 74 (711)
.|+|.|..+...+.+|+ |+.+.||.|||+++.+|+. ..+. +..+.|++|+..|+.+-++++..+...+ |+++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 114 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH-HHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH-HhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceE
Confidence 48999999999998887 9999999999999999997 4432 3479999999999999999999998887 8999
Q ss_pred EEEcCCCCHHHHHhc---cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhh
Q 005155 75 GLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (711)
Q Consensus 75 ~~i~~~~~~~~r~~a---Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~Li 139 (711)
+...++.+....... ..++|+++|++.+ .++++. . ....+ .+.++||||||.++-
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARN----K--SLNLK---HIKHFILDECDKMLE 172 (220)
T ss_dssp EEESCCSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHT----T--SSCCT---TCCEEEEESHHHHHS
T ss_pred EEEeCCCChHHHHHHHhcCCCCEEEeCHHHH-HHHHHh----C--CCCcc---cCCEEEEcCHHHHhc
Confidence 999998875444332 2469999999886 333332 1 12244 789999999999973
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=165.26 Aligned_cols=121 Identities=21% Similarity=0.118 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHhC----------------CCeEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHH
Q 005155 2 RHFDVQIIGGAVLHD----------------GSIAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAE 61 (711)
Q Consensus 2 rp~dvQl~g~~~L~~----------------G~IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae 61 (711)
.|+|.|.-|+..+.+ +-++.|.||+|||+++ +++. ..+. +..|.||||+..|+.|-.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 478899999987653 2399999999999997 5554 3343 2589999999999998777
Q ss_pred HHHHHhhhcCCeEEEEcCCCC-HHHHHh--ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 62 WMERVHRFLGLSVGLIQRGMI-PEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 62 ~~~~~y~~LGLtv~~i~~~~~-~~~r~~--aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.+..|... .+.++.+ ...+.. .-.++|+++|+..|. +.+... ....... ++.++||||||++.
T Consensus 349 ~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~-~~l~~~----~~~~~~~---~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 349 EYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLN-NLMKAE----SDLPVYN---QQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHH-HHHHHC----CCCGGGG---SCEEEEEESCCTTH
T ss_pred HHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHH-HHHhcc----cchhccc---cccEEEEEccchhc
Confidence 76665431 1223322 332222 246899999999873 222221 0011233 67899999999975
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=132.32 Aligned_cols=124 Identities=25% Similarity=0.258 Sum_probs=98.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (711)
.|+|+|..+...+.+|+ ++.+.||+|||+++++|++ ..+ .+..+.|++|+..|+.+-++.+..++.. +
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~-~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 99 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA-ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--L 99 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH-HHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--S
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHH-HHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--c
Confidence 58999999999999887 9999999999999999997 444 3668999999999999999988887654 7
Q ss_pred eEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 73 SVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 73 tv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++....++.+.. .+.....++|+++|++.+ .++++.. ....+ .++++||||||.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~iViDEah~~~ 157 (207)
T 2gxq_A 100 KVVAVYGGTGYGKQKEALLRGADAVVATPGRA-LDYLRQG------VLDLS---RVEVAVLDEADEML 157 (207)
T ss_dssp CEEEECSSSCSHHHHHHHHHCCSEEEECHHHH-HHHHHHT------SSCCT---TCSEEEEESHHHHH
T ss_pred eEEEEECCCChHHHHHHhhCCCCEEEECHHHH-HHHHHcC------Ccchh---hceEEEEEChhHhh
Confidence 788888876532 233345789999999886 3444331 12234 79999999999986
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=124.68 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=73.1
Q ss_pred EEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEE
Q 005155 331 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (711)
Q Consensus 331 i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIA 409 (711)
+.....+|+.++.+.+... .+.++||||++...++.++..|...|+++..+|+++.+.+++..+-. +.| ...|.||
T Consensus 11 ~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLva 87 (172)
T 1t5i_A 11 VKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVA 87 (172)
T ss_dssp EECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEE
T ss_pred EECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEEE
Confidence 4456778999888777653 67799999999999999999999999999999998777777766655 445 6689999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+++|||+|+.
T Consensus 88 T~~~~~Gldi~ 98 (172)
T 1t5i_A 88 TNLFGRGMDIE 98 (172)
T ss_dssp SSCCSTTCCGG
T ss_pred CCchhcCcchh
Confidence 99999999994
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-13 Score=130.91 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=90.6
Q ss_pred CCCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------CCCEEEEecCHHHHHH-HHHHHHHHhhhcC
Q 005155 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------GEGVHVVTVNDYLAQR-DAEWMERVHRFLG 71 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------G~~VhVvT~NdyLA~R-Dae~~~~~y~~LG 71 (711)
+.|+|.|..+...+++|+ |+.+.||.|||+++.+|+.-.... +..|.|++|+..|+.+ -.+++..+... +
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~ 110 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 110 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-T
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-C
Confidence 368999999999888766 999999999999999998633222 6789999999999998 66777777655 8
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 72 Ltv~~i~~~~~~~--~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++++...++.+.. .+.....++|+++|+..| .+++.............. .++++||||||.++
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~~~~~~~~~~~---~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-ENSLLNLENGEDAGVQLS---DFSLIIIDECHHTN 175 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHH-HHHHHC-------CCCGG---GCSEEEETTC----
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHH-HHHHhccCcccccccchh---cccEEEEECchhhc
Confidence 8998888764321 222334689999999876 333332211000012233 78999999999985
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.5e-12 Score=120.20 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=73.1
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.+.....+|+.++.+.+.. ..+.++||||+++..++.+++.|.+.|+++..+|+++.+.+++..+-. +.| ...|.|
T Consensus 14 ~~~~~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv 90 (163)
T 2hjv_A 14 VIQVREENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLV 90 (163)
T ss_dssp EEECCGGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE
T ss_pred EEECChHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE
Confidence 3445678899988877765 467899999999999999999999999999999998766666655554 455 568999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
||++++||+|+.
T Consensus 91 ~T~~~~~Gld~~ 102 (163)
T 2hjv_A 91 ATDVAARGIDIE 102 (163)
T ss_dssp ECGGGTTTCCCS
T ss_pred ECChhhcCCchh
Confidence 999999999995
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-12 Score=124.20 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=61.0
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.++....+|+.++.+.+.. ...+.++||||+++..++.++..|...|+++..+++++.+.+++..+-. +.| .-.|.|
T Consensus 24 ~~~v~~~~K~~~L~~ll~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLv 101 (185)
T 2jgn_A 24 VVWVEESDKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILV 101 (185)
T ss_dssp EEECCGGGHHHHHHHHHHH-C-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEE
T ss_pred EEEeCcHHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEE
Confidence 3455677899988877765 3467899999999999999999999999999999998666666655554 456 567999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
||+++|||+||.
T Consensus 102 aT~~~~~Gldi~ 113 (185)
T 2jgn_A 102 ATAVAARGLDIS 113 (185)
T ss_dssp EEC------CCC
T ss_pred EcChhhcCCCcc
Confidence 999999999994
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=126.06 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=72.3
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTI 408 (711)
.++....+|...+.+.+.. .+.++||||+++..++.+++.|+..|+++..+++++.+.+++..+-. +.| .-.|.|
T Consensus 34 ~~~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLv 109 (191)
T 2p6n_A 34 VEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLV 109 (191)
T ss_dssp EEECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEE
T ss_pred EEEcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEE
Confidence 3456677899888776653 46689999999999999999999999999999998777777765555 456 567999
Q ss_pred EcCCCcCCccee
Q 005155 409 STNMAGRGTDII 420 (711)
Q Consensus 409 ATnmAGRGTDIk 420 (711)
||+++|||+||.
T Consensus 110 aT~~~~~Gldi~ 121 (191)
T 2p6n_A 110 ATDVASKGLDFP 121 (191)
T ss_dssp ECHHHHTTCCCC
T ss_pred EcCchhcCCCcc
Confidence 999999999994
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-11 Score=116.32 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=69.2
Q ss_pred eChhH-HHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEc
Q 005155 333 ATARG-KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST 410 (711)
Q Consensus 333 ~t~~~-K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIAT 410 (711)
....+ |..++.+.+.. ..+.++||||++++.++.++..|.+.|+++..+|+++...+++..+-. +.| ...|.|||
T Consensus 11 ~~~~~~K~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T 87 (165)
T 1fuk_A 11 VEEEEYKYECLTDLYDS--ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILIST 87 (165)
T ss_dssp EESGGGHHHHHHHHHHH--TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEE
T ss_pred CCcchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 33445 88888776655 256799999999999999999999999999999998766666655544 455 56899999
Q ss_pred CCCcCCccee
Q 005155 411 NMAGRGTDII 420 (711)
Q Consensus 411 nmAGRGTDIk 420 (711)
++++||+|+.
T Consensus 88 ~~~~~G~d~~ 97 (165)
T 1fuk_A 88 DLLARGIDVQ 97 (165)
T ss_dssp GGGTTTCCCC
T ss_pred ChhhcCCCcc
Confidence 9999999995
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=117.00 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmA 413 (711)
..+|+.++.+.+.. ..+.++||||+++..++.++..|.+.|+++..+|+++.+.+++..+-. +.| ...|.|||+++
T Consensus 18 ~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~ 94 (175)
T 2rb4_A 18 RKDKYQALCNIYGS--ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHHHTT--SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSC
T ss_pred hHhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecch
Confidence 34488887766644 256799999999999999999999999999999998767677655555 455 56899999999
Q ss_pred cCCccee
Q 005155 414 GRGTDII 420 (711)
Q Consensus 414 GRGTDIk 420 (711)
|||+|+.
T Consensus 95 ~~Gid~~ 101 (175)
T 2rb4_A 95 ARGIDVK 101 (175)
T ss_dssp CTTTCCT
T ss_pred hcCCCcc
Confidence 9999994
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=131.57 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
.|+|.|.-.+- ++.+|+ ++||.||+|||+++++|+.. .+.+|.|+||+..|+.|-.+++.. +++++.
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~----l~~~~~ 79 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKL----LGLKTG 79 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGG----GTCCEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHh----cCCcEE
Confidence 47888877643 455776 99999999999999999863 478999999999999988876655 577777
Q ss_pred EEcCCCC----------H---------------------------------------HHHHhccCCCeEEECCCchhhHH
Q 005155 76 LIQRGMI----------P---------------------------------------EERRSNYRCDITYTNNSELGFDY 106 (711)
Q Consensus 76 ~i~~~~~----------~---------------------------------------~~r~~aY~~DI~YgT~~elgfDy 106 (711)
.+.+... + ..|+.+..|||+++|.+-|--+.
T Consensus 80 ~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~ 159 (540)
T 2vl7_A 80 FLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKP 159 (540)
T ss_dssp EC---------------------------------------------------------CTTGGGCSEEEEETHHHHSHH
T ss_pred EecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHH
Confidence 6553210 0 01334567899999987662223
Q ss_pred HHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCC
Q 005155 107 LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (711)
Q Consensus 107 LrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~ 143 (711)
.+..+.......... +..++|+||||.+ |.++
T Consensus 160 ~~~~~~~~~~~~~~~---~~~~vIiDEAHnl--~~a~ 191 (540)
T 2vl7_A 160 IRNSVFCNKDDCLKL---EDYLIVIDEAHNL--LEAD 191 (540)
T ss_dssp HHHHHSCSSTTSCCG---GGEEEEETTGGGG--GGGG
T ss_pred HHHhhCcccccccCc---CCCEEEEEccccH--HHHH
Confidence 333222000000223 6789999999998 4354
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=124.34 Aligned_cols=123 Identities=13% Similarity=0.055 Sum_probs=94.1
Q ss_pred CCchhHHHHHHHHhCC--CeEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHDG--SIAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|+|.|..+...++++ .|+.+.||.|||+++.+++......|. .|.|++|+..|+.+-.+.+..+....++.++.+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 6899999999976644 388999999999999888764434554 8999999999999999999888777777888888
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.+... .....++|+++|++.+ ..+. ....+ .++++||||||.+.
T Consensus 193 ~~~~~~~-~~~~~~~I~v~T~~~l-----~~~~-----~~~~~---~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 193 GGASKDD-KYKNDAPVVVGTWQTV-----VKQP-----KEWFS---QFGMMMNDECHLAT 238 (282)
T ss_dssp TTCSSTT-CCCTTCSEEEECHHHH-----TTSC-----GGGGG---GEEEEEEETGGGCC
T ss_pred CCCcchh-hhccCCcEEEEchHHH-----HhhH-----HHHHh---hCCEEEEECCccCC
Confidence 7764322 2235689999999644 2211 12234 78999999999985
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.4e-10 Score=128.47 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=92.4
Q ss_pred eeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEE
Q 005155 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (711)
Q Consensus 279 Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV 358 (711)
.++..++..-.....+|.|......++ .-.++..+. +|.... .|.........+...++.++....+.|.+|||
T Consensus 377 l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~-r~~~l~-~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlV 450 (661)
T 2d7d_A 377 LRFEEFEKHMHNIVYVSATPGPYEIEH----TDEMVEQII-RPTGLL-DPLIDVRPIEGQIDDLIGEIQARIERNERVLV 450 (661)
T ss_dssp CCHHHHHHTCSEEEEECSSCCHHHHHH----CSSCEEECC-CTTCCC-CCEEEEECSTTHHHHHHHHHHHHHTTTCEEEE
T ss_pred ccHHHHhccCCCEEEEecCCChhHHHh----hhCeeeeee-cccCCC-CCeEEEecccchHHHHHHHHHHHHhcCCeEEE
Confidence 345556555556778999986543222 112222211 111111 11122233445677788888887778999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 359 ~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
||+|...++.|++.|.+.|+++..+|+++.+.+|+..+-. +.| .-.|+||||+++||.||.
T Consensus 451 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip 512 (661)
T 2d7d_A 451 TTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIP 512 (661)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCT
T ss_pred EECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccC
Confidence 9999999999999999999999999998766667655444 556 457999999999999994
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=130.26 Aligned_cols=130 Identities=16% Similarity=0.089 Sum_probs=97.4
Q ss_pred CCCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 1 MRHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 1 ~rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
+.|+|.|.-.+- ++.+|+ ++|+.||+|||+++++|+.. .+.+|.|+||+..|+.|-.+++..+.+.+++++
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~ 78 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITF 78 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccE
Confidence 357888887544 455777 99999999999999999974 688999999999999999999998888889999
Q ss_pred EEEcCCC---------------------------------CH--------------------HHHHhccCCCeEEECCCc
Q 005155 75 GLIQRGM---------------------------------IP--------------------EERRSNYRCDITYTNNSE 101 (711)
Q Consensus 75 ~~i~~~~---------------------------------~~--------------------~~r~~aY~~DI~YgT~~e 101 (711)
.++.+.. +. ..|+.+-.|||+++|.+-
T Consensus 79 ~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~ 158 (551)
T 3crv_A 79 SFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPY 158 (551)
T ss_dssp EECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHH
T ss_pred EEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchH
Confidence 8876521 00 014556789999999986
Q ss_pred hhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCC
Q 005155 102 LGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (711)
Q Consensus 102 lgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~t 144 (711)
|--+.+++.+. ... ...++||||||.+. | ++.
T Consensus 159 l~~~~~~~~~~------~~~---~~~~vIiDEAHnl~-d-~~~ 190 (551)
T 3crv_A 159 FFIDRYREFID------IDL---REYMIVIDEAHNLD-K-VNE 190 (551)
T ss_dssp HHCHHHHTTSC------CCS---TTEEEEETTGGGGG-G-GGG
T ss_pred hcCHHHHHhcC------CCc---CCeEEEEecccchH-H-HHH
Confidence 62222232211 122 67899999999986 6 654
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-11 Score=117.90 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCc
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAG 414 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAG 414 (711)
.+|..++.+.+.. ..+.++||||+++..++.+++.|+..|+++..+|+++...+++..+-. +.| ...|.|||++++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~ 91 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVAA 91 (170)
Confidence 5677776665544 356789999999999999999999999999999998666666654444 344 457999999999
Q ss_pred CCccee
Q 005155 415 RGTDII 420 (711)
Q Consensus 415 RGTDIk 420 (711)
||+|+.
T Consensus 92 ~Gid~~ 97 (170)
T 2yjt_D 92 RGIDIP 97 (170)
Confidence 999995
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=9e-10 Score=110.76 Aligned_cols=123 Identities=20% Similarity=0.080 Sum_probs=89.1
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC----CEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE----GVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~-G~----~VhVvT~NdyLA~RDae~~~~~y~-~LGLtv 74 (711)
.+++|.-+...+.+|+ ++...||+|||..+.++++-..+. |+ ++.++.|+..||.+-++.+...+. .+|..+
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 4789999999999998 889999999999888887644442 33 788899999999999888766553 457777
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhc
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDe 141 (711)
+...... .+...-.++|+++|++.+ .+.|+. ..+ ++.++||||||.+.+|.
T Consensus 142 g~~~~~~---~~~~~~~~~Ivv~Tpg~l-~~~l~~---------~l~---~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 142 GYSVRFE---SILPRPHASIMFCTVGVL-LRKLEA---------GIR---GISHVIVDEIHERDINT 192 (235)
T ss_dssp EEEETTE---EECCCSSSEEEEEEHHHH-HHHHHH---------CCT---TCCEEEECCTTSCCHHH
T ss_pred EEeechh---hccCCCCCeEEEECHHHH-HHHHHh---------hhc---CCcEEEEECCccCCcch
Confidence 7543221 111123578999999877 344432 144 89999999999863343
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-09 Score=106.25 Aligned_cols=110 Identities=21% Similarity=0.086 Sum_probs=85.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe-EEEEc
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS-VGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt-v~~i~ 78 (711)
.|+|.|..+...+.+++ |+.+.||.|||+++..++.. .+..+.|++|+..|+.+-.+.+.. +|++ ++.+.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~----~~~~~v~~~~ 165 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGI----FGEEYVGEFS 165 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGG----GCGGGEEEES
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHh----CCCCeEEEEe
Confidence 57899999999887765 89999999999998887752 288999999999999875555544 5899 88887
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++.. ..++|+++|...+ ...+. .... .++++||||+|.+.
T Consensus 166 g~~~-------~~~~i~v~T~~~l-----~~~~~-----~~~~---~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 166 GRIK-------ELKPLTVSTYDSA-----YVNAE-----KLGN---RFMLLIFDEVHHLP 205 (237)
T ss_dssp SSCB-------CCCSEEEEEHHHH-----HHTHH-----HHTT---TCSEEEEECSSCCC
T ss_pred CCCC-------CcCCEEEEeHHHH-----HhhHH-----Hhcc---cCCEEEEECCccCC
Confidence 7653 3679999996543 22221 1223 68999999999974
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=105.91 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=73.7
Q ss_pred eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCCCcc-EEEE
Q 005155 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYA-ITIS 409 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~-VTIA 409 (711)
.....|+.++.+.+.+..+.|.+|||||.+....+.|...|.+. |+++..+++.+...+|++.+-. +.|.... +.|+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34568999998888887788999999999999999999999985 9999999998766677766655 5663444 7899
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+.+|+|+|+.
T Consensus 172 t~~~g~Glnl~ 182 (271)
T 1z5z_A 172 VKAGGFGINLT 182 (271)
T ss_dssp CCTTCCCCCCT
T ss_pred hhhhcCCcCcc
Confidence 99999999984
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-05 Score=90.64 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred CCchhHHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
+|+|-|.--+- ++.+|+ ++|+.||.|||+++++|+...+. .|.+|.|+|++..|+.|-.+++..+-...++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 57788866554 456676 99999999999999999975443 488999999999999999999999988889998
Q ss_pred EEEcC
Q 005155 75 GLIQR 79 (711)
Q Consensus 75 ~~i~~ 79 (711)
..+.|
T Consensus 83 ~~l~g 87 (620)
T 4a15_A 83 IPMQG 87 (620)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 87665
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00033 Score=80.45 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=56.6
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHH--HHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKT--LVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKT--Lva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.+.|..++...+.++ ++.-.+|+||| ++++++++ ..+ .|..|.+++||..+|.|-.+.++.....+|++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l-~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL-IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH-HHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-HHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 467999998887777 88889999999 45556654 333 466899999999999999999998888888763
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.22 Score=58.05 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=68.3
Q ss_pred chhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHH-HHHHcC---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAY-LNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~-l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
-|-|.-++-. .+|. ++...-|+|||.+.+--+. +..-.| ..+.+||.|.-.|..-.+.+..+ +|-.
T Consensus 13 n~~Q~~av~~-~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~---l~~~----- 83 (724)
T 1pjr_A 13 NKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL---LGGA----- 83 (724)
T ss_dssp CHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH---HGGG-----
T ss_pred CHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH---hccc-----
Confidence 4567665543 3566 8899999999987765443 222123 57999999998777544444433 2211
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
..++.++|...|....||.....- -- +.+|-|+|+.|..
T Consensus 84 ------------~~~~~v~Tfhs~~~~ilr~~~~~~-----g~---~~~f~i~d~~d~~ 122 (724)
T 1pjr_A 84 ------------AEDVWISTFHSMCVRILRRDIDRI-----GI---NRNFSILDPTDQL 122 (724)
T ss_dssp ------------GTTSEEEEHHHHHHHHHHHHGGGG-----TC---CTTCEECCHHHHH
T ss_pred ------------ccCcEEeeHHHHHHHHHHHHHHHh-----CC---CCCCEECCHHHHH
Confidence 124788999999998888754321 11 4568899998863
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=1.6 Score=49.33 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=68.7
Q ss_pred hhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc-C---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT-G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL~-G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
+-|.-++-. .+|. ++...-|+|||.+.+--+....-. | ..+.++|+|.-.|..-.+.+..+ +|-.
T Consensus 12 ~~Q~~av~~-~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~---~~~~------ 81 (647)
T 3lfu_A 12 DKQREAVAA-PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL---MGTS------ 81 (647)
T ss_dssp HHHHHHHTC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH---HCSC------
T ss_pred HHHHHHHhC-CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH---hccc------
Confidence 456655542 2455 889999999998766544322223 2 58999999999998666665544 3321
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...+.++|...|....|+...... -- +.++-|+|+.|..
T Consensus 82 -----------~~~~~v~Tfhs~~~~il~~~~~~~-----~~---~~~~~i~~~~~~~ 120 (647)
T 3lfu_A 82 -----------QGGMWVGTFHGLAHRLLRAHHMDA-----NL---PQDFQILDSEDQL 120 (647)
T ss_dssp -----------CTTCEEEEHHHHHHHHHHHTTGGG-----TC---CTTCEEECHHHHH
T ss_pred -----------cCCcEEEcHHHHHHHHHHHHHHHh-----CC---CCCCEEeCHHHHH
Confidence 135888999999988888653211 11 3467888988764
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.069 Score=61.48 Aligned_cols=109 Identities=26% Similarity=0.283 Sum_probs=70.1
Q ss_pred CCCchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHH-HHHHHcC---CCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAA-YLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa-~l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
|...|-|.-++-.. +|. ++...-|+|||.+.+--+ ++..-.| ..+.+||.|.-.|..-.+.+... +|-.
T Consensus 1 ~~L~~~Q~~av~~~-~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~---l~~~-- 74 (673)
T 1uaa_A 1 MRLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT---LGRK-- 74 (673)
T ss_dssp -CCCHHHHHHHHCC-SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH---SCTT--
T ss_pred CCCCHHHHHHHhCC-CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH---cCcc--
Confidence 45567787766543 555 788999999998766443 3222123 68999999999988555554433 3321
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
-..++.++|...|...+|+..... .-. +.+|-|+|+.|..
T Consensus 75 --------------~~~~~~v~Tfhs~~~~il~~~~~~----~g~----~~~~~i~d~~~~~ 114 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGLDIIKREYAA----LGM----KANFSLFDDTDQL 114 (673)
T ss_dssp --------------TTTTSEEEEHHHHHHHHHHHHHHH----TTC----CCCCCEECHHHHH
T ss_pred --------------cccCCEEEeHHHHHHHHHHHHHHH----hCC----CCCCEEeCHHHHH
Confidence 012588899999999988875321 111 3456788988764
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.15 Score=58.46 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=42.6
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHH-HHHHcCCCEEEEecCHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWME 64 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~ 64 (711)
+-|..++-..+.+. +++-..|+|||.+.+-.+. +....+..|.|+++|..-|.+-.+.+.
T Consensus 183 ~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 183 HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 56777776655544 7888899999976543332 222268899999999988877766654
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.21 Score=57.29 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=40.6
Q ss_pred hhHHHHHHHHh-CCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLH-DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 5 dvQl~g~~~L~-~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~ 63 (711)
+-|..|+...+ ... |++=.-|+|||-|.+-.++...-.|+.|.|+|+|..=+..-.+.+
T Consensus 192 ~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 192 TSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHH
Confidence 45777777544 343 777789999997655444433457999999999977665554444
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.27 Score=58.34 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHH-HHHHHcCCCEEEEecCHHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa-~l~AL~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
+-|..++-..+.+. +++-..|+|||.+.+-.+ .+....+..|.|+|+|..-|.+-.+.+..
T Consensus 363 ~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 363 SSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp HHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 56888877776655 889999999997644333 33334789999999999888877776654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=92.95 E-value=0.27 Score=58.34 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHH-HHHHHcCCCEEEEecCHHHHHHHHHHHH
Q 005155 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWME 64 (711)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa-~l~AL~G~~VhVvT~NdyLA~RDae~~~ 64 (711)
+-|..++-..+.+. +++-..|+|||.+.+-.+ .+....|..|.|+++|.--|.+-.+.+.
T Consensus 359 ~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 359 HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp HHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 56777777655555 788899999997644333 2222368899999999988877666654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.08 E-value=0.17 Score=49.57 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
.|.|||..++-.+.-..-.|+.|.+++|.
T Consensus 17 mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 17 MYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 47799977666665344589999999976
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.99 Score=49.08 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHhCC--CeEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDG--SIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G--~IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
.++|-|.--.-.+... .++++.-+-|||.+++..++..++. |..|.++.++..-|+.-++.+.++++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 3556665433333322 3899999999997655555445554 55799999999999988888888887654
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.83 Score=51.97 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=50.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (711)
+++|-|.--.-.+...+ ++++.-|.|||.+++..+.+.++. |..|.++.++...|+.-++.+.++++.++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 45677754443444444 899999999997655444445554 34699999999999999888888887664
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.23 Score=47.99 Aligned_cols=30 Identities=20% Similarity=0.022 Sum_probs=21.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecC
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~N 52 (711)
..|.|||..+.-.+.-....|+.|.++++.
T Consensus 11 ~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 348899987655554334578899999987
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=0.56 Score=53.45 Aligned_cols=60 Identities=20% Similarity=0.074 Sum_probs=44.2
Q ss_pred chhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Q 005155 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~ 63 (711)
-+-|..++-.+..+. +..=.-|+|||.++.-.+....-.|..|.+++||.-.|++-.+..
T Consensus 191 ~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 191 SEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 467888877776655 677789999997544433334457999999999999998766543
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=86.35 E-value=4.8 Score=39.79 Aligned_cols=36 Identities=31% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCC-eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEec
Q 005155 16 DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (711)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~ 51 (711)
+|. ++--..|-|||-+|+-.++-.+-.|.+|.|+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 454 333445666776554444434558999999954
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=2.6 Score=43.72 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=32.7
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
-+.|+|||-++...+.+.+-.|+.|.++...-+-+... +++..+.+.+|+.+-
T Consensus 105 g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-~ql~~~~~~~~l~~~ 157 (295)
T 1ls1_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-EQLRLLGEKVGVPVL 157 (295)
T ss_dssp CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-HHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-HHHHHhcccCCeEEE
Confidence 46899998766666656677899999988654322111 223334445566554
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=85.25 E-value=2.2 Score=47.13 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=35.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
=.+|+|||-++.-.+...+-.|+.|.+++...|=+. ..+++..+.+..|+.+..
T Consensus 104 G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~-a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 104 GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA-AYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHH-HHHHHHHHHHTTTCCEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchh-HHHHHHHHHHhcCCceee
Confidence 358999987655555545678999999986544321 234555566677776553
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.13 E-value=2 Score=47.61 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=35.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
.+|+|||.+++-.+...+-.|+.|.+++.-.|=+. -.+++....+..|+.+..
T Consensus 108 ~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a-a~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG-AYHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH-HHHHHHHHHGGGTCEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh-HHHHHHHHHHhcCCcEEe
Confidence 48999987544444435668999999986544331 245666666777887653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=84.46 E-value=1.8 Score=45.41 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=32.7
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 23 ~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
.+|+|||.++...+.+.+-.|+.|.++....+=+. -.+++....+.+|+.+
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-AIEQLKIWGERVGATV 162 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-HHHHHHHHHHHHTCEE
T ss_pred CCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-HHHHHHHHHHHcCCcE
Confidence 48999997666666556778999999886543211 1233444455667765
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=84.39 E-value=1.6 Score=50.42 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCchhHHHHHHHH----hCCC---eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 2 RHFDVQIIGGAVL----HDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 2 rp~dvQl~g~~~L----~~G~---IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
.|..-|.-++-.| .+|. +..-.||+|||++++-. +..+ ++++.|||+|..+|.+-++++..|+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~--~~~~-~~~~lvv~~~~~~A~~l~~el~~~~ 81 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNL--IKEV-NKPTLVIAHNKTLAGQLYSEFKEFF 81 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH--HHHH-CCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHH--HHHh-CCCEEEEECCHHHHHHHHHHHHHHc
Confidence 4667776554433 3452 56788999999765432 2333 6789999999999999999988886
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=82.04 E-value=0.42 Score=48.12 Aligned_cols=30 Identities=13% Similarity=-0.188 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCEEEEecCH
Q 005155 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (711)
Q Consensus 24 TGEGKTLva~Lpa~l~AL~G~~VhVvT~Nd 53 (711)
+|.|||..+.-.+.-.+-.|..|.++++.-
T Consensus 21 mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 588999776666654445788999997643
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=81.46 E-value=5.5 Score=43.52 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=36.3
Q ss_pred hhHHHHHHHHh------CCC-eEEecCCCcHHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHH
Q 005155 5 DVQIIGGAVLH------DGS-IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAE 61 (711)
Q Consensus 5 dvQl~g~~~L~------~G~-IaEm~TGEGKTLva~Lpa~l~AL~G~-~VhVvT~NdyLA~RDae 61 (711)
+-|..+.-.+. +|. ++.-..|+|||.++...+....-.|. .|.++|+|.-.|+.-.+
T Consensus 28 ~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 45666665442 223 88889999999654333322222454 89999999887765443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 711 | ||||
| d1nkta3 | 288 | c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa | 6e-54 | |
| d1nkta3 | 288 | c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa | 1e-16 | |
| d1tf5a3 | 273 | c.37.1.19 (A:1-226,A:349-395) Translocation ATPase | 2e-46 | |
| d1tf5a3 | 273 | c.37.1.19 (A:1-226,A:349-395) Translocation ATPase | 3e-20 | |
| d1tf5a1 | 122 | a.162.1.1 (A:227-348) Pre-protein crosslinking dom | 1e-31 | |
| d1nkta4 | 219 | c.37.1.19 (A:397-615) Translocation ATPase SecA, n | 3e-30 | |
| d1nkta4 | 219 | c.37.1.19 (A:397-615) Translocation ATPase SecA, n | 3e-23 | |
| d1nkta1 | 124 | a.162.1.1 (A:226-349) Pre-protein crosslinking dom | 4e-30 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 2e-22 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 2e-22 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 8e-09 | |
| d1nkta2 | 220 | a.172.1.1 (A:616-835) Helical scaffold and wing do | 2e-07 | |
| d1tf5a2 | 210 | a.172.1.1 (A:571-780) Helical scaffold and wing do | 9e-07 |
| >d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 185 bits (470), Expect = 6e-54
Identities = 98/151 (64%), Positives = 115/151 (76%), Gaps = 3/151 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
R FDVQ++G A LH G++AEMKTGEGKTL L AYLNAL G GVH+VTVNDYLA+RD+
Sbjct: 96 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDS 155
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM RVHRFLGL VG+I M P+ERR Y DITY N+E GFDYLRDN+A + + LV
Sbjct: 156 EWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 215
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151
R H+AIVDEVDS+LIDE R PL+IS +
Sbjct: 216 RG---HHYAIVDEVDSILIDEARTPLIISNQ 243
|
| >d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 78.5 bits (193), Expect = 1e-16
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 277 AQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319
A IT Q+ F+LY KL+GMTGTA+TE E +++++ V+ +PTN
Sbjct: 246 ATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 288
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 164 bits (416), Expect = 2e-46
Identities = 97/151 (64%), Positives = 116/151 (76%), Gaps = 3/151 (1%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
M F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDA
Sbjct: 79 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDA 138
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
E M ++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V
Sbjct: 139 EQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 198
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151
R P HFA++DEVDS+LIDE R PL+ISG+
Sbjct: 199 R---PLHFAVIDEVDSILIDEARTPLIISGQ 226
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 89.2 bits (221), Expect = 3e-20
Identities = 30/58 (51%), Positives = 43/58 (74%)
Query: 262 EAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319
EA+ L I S+ +A IT+Q+ F++Y KL+GMTGTAKTEE+EF ++ M V+ +PTN
Sbjct: 216 EARTPLIISGQSMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 273
|
| >d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Pre-protein crosslinking domain of SecA superfamily: Pre-protein crosslinking domain of SecA family: Pre-protein crosslinking domain of SecA domain: Pre-protein crosslinking domain of SecA species: Bacillus subtilis [TaxId: 1423]
Score = 117 bits (294), Expect = 1e-31
Identities = 48/122 (39%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPW 210
A+K Y A L YT ++K +V+LTEEG+ AE A ++L+D ++
Sbjct: 1 AAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVAL 60
Query: 211 ARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQ 270
+ ALKA ++DV Y+V +G+ +I++ TGR+ + RR+SEG+HQA+EAKEGL+IQ
Sbjct: 61 NHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQ 120
Query: 271 AD 272
+
Sbjct: 121 NE 122
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 116 bits (292), Expect = 3e-30
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379
+P IR D + T K+ +V + G+PVL+G+TSVE SEYLS ++ IP
Sbjct: 1 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP 60
Query: 380 HNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLL 438
HNVLNA+ Y +EA +A AGR+ +T++TNMAGRGTDI+LGGN L + + +R L
Sbjct: 61 HNVLNAK--YHEQEATIIAVAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGL 117
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 96.6 bits (240), Expect = 3e-23
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 536 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVS 595
+ S L + S E EV GGL+V+GT HESRRIDNQLRGR+GRQGDPG +RF +S
Sbjct: 130 WHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLS 189
Query: 596 LQDEMFQKFSFDTSWAVDLISRITNDEDMPIE 627
L DE+ ++F+ L++R+ +D+PIE
Sbjct: 190 LGDELMRRFNGA--ALETLLTRLNLPDDVPIE 219
|
| >d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Pre-protein crosslinking domain of SecA superfamily: Pre-protein crosslinking domain of SecA family: Pre-protein crosslinking domain of SecA domain: Pre-protein crosslinking domain of SecA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 112 bits (282), Expect = 4e-30
Identities = 52/124 (41%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-END 208
G A Y A++A L+ + +HY V+L+ +V + E+G+ E L ++L++ N
Sbjct: 1 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANS 60
Query: 209 PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLK 268
P ++ NALKAKE + RD YIVR+G+ LI++E TGRV RR++EG+HQA+EAKE ++
Sbjct: 61 PLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVE 120
Query: 269 IQAD 272
I+A+
Sbjct: 121 IKAE 124
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 92.6 bits (230), Expect = 2e-22
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 321 PNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPH 380
P +R D P + T GK++ ++V + G+PVLVG+ +VE SE +S LLK +GIPH
Sbjct: 2 PVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH 61
Query: 381 NVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPK 426
VLNA+ REA+ + +AG+K A+TI+TNMAGRGTDI LG K
Sbjct: 62 QVLNAK--NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVK 105
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 92.6 bits (230), Expect = 2e-22
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F +
Sbjct: 101 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAE--R 158
Query: 611 AVDLISRITNDEDMPIE 627
+ ++ R D+ PI+
Sbjct: 159 TMAMLDRFGMDDSTPIQ 175
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 54.5 bits (130), Expect = 8e-09
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 11/132 (8%)
Query: 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78
A TG GKT + AL G+ +V+ L + AE + + G+ +
Sbjct: 62 AATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLI 121
Query: 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLV--MRWPKPFHFAIVDEVDS 136
+ + N + ++ L R F F VD+VD+
Sbjct: 122 GYYHGRIPKREKENFMQNLRNF--------KIVITTTQFLSKHYRELGHFDFIFVDDVDA 173
Query: 137 VLIDEGRNPLLI 148
+L +N +
Sbjct: 174 IL-KASKNVDKL 184
|
| >d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 220 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Helical scaffold and wing domains of SecA superfamily: Helical scaffold and wing domains of SecA family: Helical scaffold and wing domains of SecA domain: Helical scaffold and wing domains of SecA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.3 bits (119), Expect = 2e-07
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 631 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYM 690
+ R + Q E+ F +RK+++++DEV+ QRK +Y R+ IL E+ Q +
Sbjct: 4 VTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILE--GENLKDQALDMV 61
Query: 691 QAVVDEIIF 699
+ V+ +
Sbjct: 62 RDVITAYVD 70
|
| >d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} Length = 210 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Helical scaffold and wing domains of SecA superfamily: Helical scaffold and wing domains of SecA family: Helical scaffold and wing domains of SecA domain: Helical scaffold and wing domains of SecA species: Bacillus subtilis [TaxId: 1423]
Score = 47.9 bits (113), Expect = 9e-07
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 631 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYM 690
+ R + Q E F RK L+++D+VL QR+ +Y R ++ +E+ + + +
Sbjct: 4 VSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVI--DSENLREIVENMI 61
Query: 691 QAVVDEIIFGNVDPLKILEF 710
++ ++ I ++ E
Sbjct: 62 KSSLERAIAAYTPREELPEE 81
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 711 | |||
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1nkta1 | 124 | Pre-protein crosslinking domain of SecA {Mycobacte | 100.0 | |
| d1tf5a1 | 122 | Pre-protein crosslinking domain of SecA {Bacillus | 100.0 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.75 | |
| d1nkta2 | 220 | Helical scaffold and wing domains of SecA {Mycobac | 99.73 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.72 | |
| d1tf5a2 | 210 | Helical scaffold and wing domains of SecA {Bacillu | 99.7 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.7 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.7 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.7 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.68 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.67 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.66 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.64 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.64 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.49 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.44 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.41 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.39 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.35 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.33 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.29 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.26 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.18 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.18 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.13 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.07 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.01 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.0 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.94 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.88 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.73 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.57 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 98.56 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.48 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.47 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.37 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.26 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.24 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.2 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.17 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.17 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.95 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.9 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 97.65 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 96.95 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 96.63 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.13 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.96 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.31 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.93 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 88.28 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 85.06 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 82.44 |
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1e-79 Score=610.10 Aligned_cols=219 Identities=46% Similarity=0.697 Sum_probs=199.0
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
.|++|+|+||.||.|..+||+||+++|+++|++||||||||.||+.||.||++|++.||+|+|||| ++|++||+||++
T Consensus 1 lP~iR~D~~D~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNA--K~herEAeIIAq 78 (219)
T d1nkta4 1 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAV 78 (219)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS--SCHHHHHHHHHT
T ss_pred CCCcccCCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccch--hhHHHHHHHHHh
Confidence 389999999999999999999999999999999999999999999999999999999999999999 689999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+||||||||||||||+||||++++++..+++......
T Consensus 79 AG~~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~-------------------------------------- 120 (219)
T d1nkta4 79 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPV-------------------------------------- 120 (219)
T ss_dssp TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTT--------------------------------------
T ss_pred cccCCcEEeeccccCCCCceeecCchhhhhHHHhhhcccCcc--------------------------------------
Confidence 999999999999999999999999999999987664311000
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
. .......+|...+..+++.|.+++++|+++||
T Consensus 121 ------------------------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 153 (219)
T d1nkta4 121 ------------------------------E-----------------TPEEYEAAWHSELPIVKEEASKEAKEVIEAGG 153 (219)
T ss_dssp ------------------------------T-----------------SHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred ------------------------------c-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 00112334556667788899999999999999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCccc
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIE 627 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~ 627 (711)
|||||||||||||||||||||||||||||||+|||||||||||+|| ++++.++|.++++++|+||+
T Consensus 154 L~VIGTErHeSrRIDnQLRGRsGRQGDPGsSrFflSLeDdLmr~F~--~~~i~~lm~~l~~~e~~~Ie 219 (219)
T d1nkta4 154 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIE 219 (219)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCC
T ss_pred cEEEeccccccccccccccccccccCCCccceeEEeccHHHHHHHC--hHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999 99999999999999999986
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3.4e-76 Score=606.65 Aligned_cols=195 Identities=63% Similarity=1.029 Sum_probs=190.9
Q ss_pred CCCchhHHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
|||||||++||++||+|+||||+|||||||+++||+|++||.|++|||||+|||||+||++||+|+|++||||||++.++
T Consensus 79 ~RhyDVQLiGgi~L~~G~iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~~~~~ 158 (273)
T d1tf5a3 79 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS 158 (273)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred eEEehhHHHHHHHHHhhhheeecCCCcchhHHHHHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcCCCccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCCccchH
Q 005155 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (711)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~~~~y~ 160 (711)
+++++|+.+|.||||||||++||||||||||+.+.+..+|| +++|||||||||||||||||||||||
T Consensus 159 ~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r---~~~~aIvDEvDsiliDeartpliisg---------- 225 (273)
T d1tf5a3 159 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR---PLHFAVIDEVDSILIDEARTPLIISG---------- 225 (273)
T ss_dssp SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEEETHHHHHTTTTTCEEEEEE----------
T ss_pred cCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccC---CCCEEEEEcchhhhhhccCCceEecc----------
Confidence 99999999999999999999999999999999988889998 99999999999999999999999997
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCcceEEeCCeEEEE
Q 005155 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (711)
Q Consensus 161 ~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d~~IviV 240 (711)
T Consensus 226 -------------------------------------------------------------------------------- 225 (273)
T d1tf5a3 226 -------------------------------------------------------------------------------- 225 (273)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCccccccccChhhhHHHHhHhCCccccCceeeeeeeehhHhhhcCccccccCCcccHHHHHHHHcCCCeEEeCCC
Q 005155 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (711)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~es~t~a~Is~q~~F~~Y~kl~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (711)
+++|+|+|||||||++|+||+||||||.++++||+++||++|++||||
T Consensus 226 -------------------------------~~~~~a~it~q~~f~~y~~l~gmtgta~~~~~e~~~iy~l~v~~iptn 273 (273)
T d1tf5a3 226 -------------------------------QSMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 273 (273)
T ss_dssp -------------------------------EEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred -------------------------------CccchhhhhHHHHHHHHHHHhCCccccHHHHHHHHhccCCceEeCCCC
Confidence 246899999999999999999999999999999999999999999997
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5.6e-67 Score=509.39 Aligned_cols=175 Identities=52% Similarity=0.847 Sum_probs=171.2
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHh
Q 005155 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (711)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~ 399 (711)
||++|.|+||.||.|..+||+||+++|.++|++||||||||.|++.||.||++|++.|++|+|||| +++++|++||++
T Consensus 1 rP~~R~d~~D~vf~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnA--k~~~~Ea~II~~ 78 (175)
T d1tf5a4 1 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEE 78 (175)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS--SCHHHHHHHHTT
T ss_pred CCcCccCCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehh--hhHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 005155 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (711)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (711)
||++|+|||||||||||||||||
T Consensus 79 Ag~~g~VtIATNmAGRGtDikl~--------------------------------------------------------- 101 (175)
T d1tf5a4 79 AGQKGAVTIATNMAGRGTDIKLG--------------------------------------------------------- 101 (175)
T ss_dssp TTSTTCEEEEETTSSTTCCCCCC---------------------------------------------------------
T ss_pred ccCCCceeehhhHHHcCCCccch---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred HhhhccccCCchhhhhhhhcchhhhhhhhhhhHHHHHHHhhhhccCCCCChhhHHHhhhhhhhccccccccchhhhhcCC
Q 005155 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (711)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (711)
++|.++||
T Consensus 102 ------------------------------------------------------------------------~~v~~~GG 109 (175)
T d1tf5a4 102 ------------------------------------------------------------------------EGVKELGG 109 (175)
T ss_dssp ------------------------------------------------------------------------TTSGGGTS
T ss_pred ------------------------------------------------------------------------HHHHhCCC
Confidence 47899999
Q ss_pred eEEEeecCCCchhHHHHhhcccccCCCCCcceEEEecchhhhhhccCCchHHHHHHHhcCCCCCCccc
Q 005155 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIE 627 (711)
Q Consensus 560 L~VIgTerheSrRiD~QLrGRaGRQGDpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~ 627 (711)
|||||||||||+|||+||+||||||||||||+||+||||+||++|| ++++.++|.++++++++||+
T Consensus 110 LhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD~l~~~f~--~~~~~~~~~~~~~~~~~~i~ 175 (175)
T d1tf5a4 110 LAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFG--AERTMAMLDRFGMDDSTPIQ 175 (175)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSH--HHHHHHHHHHHTCCSSSCBC
T ss_pred cEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCHHHHHHHh--HHHHHHHHHHhCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999 99999999999999999986
|
| >d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Pre-protein crosslinking domain of SecA superfamily: Pre-protein crosslinking domain of SecA family: Pre-protein crosslinking domain of SecA domain: Pre-protein crosslinking domain of SecA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=6.2e-38 Score=289.68 Aligned_cols=123 Identities=41% Similarity=0.734 Sum_probs=118.7
Q ss_pred CCCCCCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCc
Q 005155 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDV 228 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~ 228 (711)
||+...+++|..+++++..|.++.||.+|++.|+|+||++|+.++|+++++.+||++.+ +|.|+|++||+|+++|++|+
T Consensus 1 Gpae~ss~~Y~~~~~l~~~L~~d~dY~iDek~k~V~LTe~Gi~~iE~~l~~~~Ly~~~n~~~~~~v~~AL~A~~lf~~d~ 80 (124)
T d1nkta1 1 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 80 (124)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCchhHHHHHHHHHHHhcCCCCCEEEEcCCCEEEeeHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHhhhcCc
Confidence 56777888999999999999999999999999999999999999999999999999876 89999999999999999999
Q ss_pred ceEEeCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccC
Q 005155 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQAD 272 (711)
Q Consensus 229 dYiV~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~e 272 (711)
||||+||+|+|||+||||+|||||||+||||||||||||+|++|
T Consensus 81 dYiV~d~~v~ivDe~TGR~~~grr~s~GLHQaiEaKE~v~i~~E 124 (124)
T d1nkta1 81 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAE 124 (124)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCC
T ss_pred eEEEecCeEEEEeccCCCcccCCCcChHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999986
|
| >d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Pre-protein crosslinking domain of SecA superfamily: Pre-protein crosslinking domain of SecA family: Pre-protein crosslinking domain of SecA domain: Pre-protein crosslinking domain of SecA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4.6e-37 Score=283.19 Aligned_cols=119 Identities=39% Similarity=0.639 Sum_probs=114.6
Q ss_pred CCccchHHHHHHHHHcccCCCeEEeCCCCeeeecHhhHHHHHHhcCCCCCCCCCC-chHHHHHHHHHHHHHhccCcceEE
Q 005155 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIV 232 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~AL~A~~l~~~d~dYiV 232 (711)
.++++|..++++++.|.++.||.+|+++|+|+||++|+.++|+++++.+||++.+ .+.++|++||+|+++|++|+||||
T Consensus 3 ~ss~lY~~a~~lv~~L~~~~DY~iDek~rsV~LTe~G~~~vE~~l~~~~Ly~~~n~~~~~~i~~ALkA~~lf~~d~~YiV 82 (122)
T d1tf5a1 3 KSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVV 82 (122)
T ss_dssp CCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEE
T ss_pred ccHHHHHHHHHHHHhCCCCCCEEEecCccEeeeeccHHHHHHHhcCccccccccchhHHHHHHHHHHHHHHHhcCcceee
Confidence 3467899999999999999999999999999999999999999999999999887 799999999999999999999999
Q ss_pred eCCeEEEEeCCCCccccccccChhhhHHHHhHhCCccccC
Q 005155 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQAD 272 (711)
Q Consensus 233 ~d~~IviVD~~TGR~~~gr~ws~GLHQaiEaKEgv~I~~e 272 (711)
+||+|+|||+||||+|||||||+||||||||||||+|++|
T Consensus 83 ~~~~v~ivDe~TGR~~~gr~~~~GlhQaiEaKE~v~i~~e 122 (122)
T d1tf5a1 83 EDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNE 122 (122)
T ss_dssp ETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCC
T ss_pred cCCeEEEEeccCCCCccCcccCcHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999886
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.8e-18 Score=170.56 Aligned_cols=143 Identities=19% Similarity=0.259 Sum_probs=116.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+|++||..+++.+++|+ +++.+||+|||++|++|++ +.+ .+..+.|++|+++||.+.++.+..+....++++.
T Consensus 39 ~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil-~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~ 117 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 117 (222)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccc-ccccccccCceeEEecchHHHHHHHHHHHHHHhCccceeEE
Confidence 69999999999999999 9999999999999999996 555 2346899999999999999999999999999999
Q ss_pred EEcCCCCHHH--HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~~~~--r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
++.++.+... .....++||++|||+++ .|+++.. ....+ .+.|+|+||||.|| |.+
T Consensus 118 ~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl-~~~~~~~------~~~~~---~l~~lVlDEaD~ll-~~~----------- 175 (222)
T d2j0sa1 118 ACIGGTNVGEDIRKLDYGQHVVAGTPGRV-FDMIRRR------SLRTR---AIKMLVLDEADEML-NKG----------- 175 (222)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHT-STT-----------
T ss_pred EEeecccchhhHHHhccCCeEEeCCCCcH-Hhccccc------ccccc---cceeeeecchhHhh-hcC-----------
Confidence 9999877433 34457899999999987 4444322 22344 89999999999997 543
Q ss_pred CCccchHHHHHHHHHccc
Q 005155 154 KDVARYPVAAKVAELLVQ 171 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~ 171 (711)
+...+..+.+.+++
T Consensus 176 ----f~~~i~~I~~~l~~ 189 (222)
T d2j0sa1 176 ----FKEQIYDVYRYLPP 189 (222)
T ss_dssp ----THHHHHHHHTTSCT
T ss_pred ----cHHHHHHHHHhCCC
Confidence 34567777777753
|
| >d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Helical scaffold and wing domains of SecA superfamily: Helical scaffold and wing domains of SecA family: Helical scaffold and wing domains of SecA domain: Helical scaffold and wing domains of SecA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=2.8e-18 Score=170.99 Aligned_cols=77 Identities=26% Similarity=0.434 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 628 GDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 628 ~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
|+|++|+|++||++||++||++||+||+||+|||.||++||++|++||+ ++++.+.|.+|+++++++++..+.++..
T Consensus 1 skmvtk~Ie~AQkkVE~~nfdiRK~lleYDdVmn~QR~~IY~~R~~iL~--~~~~~~~i~~~~~~~i~~~v~~~~~~~~ 77 (220)
T d1nkta2 1 AKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILE--GENLKDQALDMVRDVITAYVDGATGEGY 77 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred ChhhHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHhhHHHHhc--ccchHHHHHHHHHHHHHHhhhhhcccch
Confidence 6899999999999999999999999999999999999999999999995 4689999999999999999998876554
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.72 E-value=5.4e-18 Score=172.12 Aligned_cols=67 Identities=9% Similarity=0.148 Sum_probs=52.8
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceec
Q 005155 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 351 ~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkL 421 (711)
..+.++||||+++++++.+++.|.+.|+.+..+|++..+..+ ...+.| .-.+.||||.++||.|++.
T Consensus 176 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~---~~~~~~-~~~~lvaT~~~~~G~~~~~ 242 (305)
T d2bmfa2 176 DFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY---IKTRTN-DWDFVVTTDISEMGANFKA 242 (305)
T ss_dssp SSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG---GGGGTS-CCSEEEECGGGGTTCCCCC
T ss_pred hhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH---hhhhcc-chhhhhhhHHHHhcCCCCc
Confidence 456789999999999999999999999999999986322111 112334 4479999999999999864
|
| >d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Helical scaffold and wing domains of SecA superfamily: Helical scaffold and wing domains of SecA family: Helical scaffold and wing domains of SecA domain: Helical scaffold and wing domains of SecA species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=1.4e-17 Score=164.69 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHhhcCCCcc
Q 005155 628 GDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (711)
Q Consensus 628 ~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (711)
|+|++|+|++||++||++||++||+|++||+|||.||++||++|++||. ++++.+.+.++++++++.+++.+.++..
T Consensus 1 Sk~isk~ie~AQkkvE~~nf~iRK~lleyDdVln~QR~~IY~~R~~iL~--~~~~~~~i~~~~~~~i~~~i~~~~~~~~ 77 (210)
T d1tf5a2 1 SKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVID--SENLREIVENMIKSSLERAIAAYTPREE 77 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHhhhHHHHHHHHHhcccc
Confidence 6899999999999999999999999999999999999999999999995 4689999999999999999998876654
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.7e-17 Score=158.13 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=113.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhc-CCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLtv~ 75 (711)
+|++||..+++.+++|+ |++++||+|||++|++|++.+.. .+..+.|++|+++||.+..+++..+.... ++.+.
T Consensus 25 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T d1veca_ 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccCcccc
Confidence 69999999999999999 99999999999999999974322 34579999999999999999999988755 67788
Q ss_pred EEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCC
Q 005155 76 LIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (711)
Q Consensus 76 ~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~ 153 (711)
...++.+..... ..-.+||++|||+++ .++++.+ ....+ .+.++|+||||.|| |.+
T Consensus 105 ~~~g~~~~~~~~~~l~~~~~ivv~TPgrl-~~~~~~~------~~~~~---~l~~lVlDEaD~ll-~~~----------- 162 (206)
T d1veca_ 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRI-LDLIKKG------VAKVD---HVQMIVLDEADKLL-SQD----------- 162 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEEETHHHHT-STT-----------
T ss_pred cccCCccHHHHHHHHHhccCeEEeCCccc-cccccch------hcccc---ccceEEEecccccc-ccc-----------
Confidence 887777654433 345789999999987 3444322 12344 79999999999987 543
Q ss_pred CCccchHHHHHHHHHccc
Q 005155 154 KDVARYPVAAKVAELLVQ 171 (711)
Q Consensus 154 ~~~~~y~~~~~i~~~l~~ 171 (711)
+...+..+.+.+++
T Consensus 163 ----f~~~i~~I~~~~~~ 176 (206)
T d1veca_ 163 ----FVQIMEDIILTLPK 176 (206)
T ss_dssp ----THHHHHHHHHHSCT
T ss_pred ----hHHHHHHHHHhCCC
Confidence 34578888888854
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.4e-17 Score=162.02 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=112.9
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+|++||..+++.++.|+ +++..||+|||++|++|++ +.+ .+..+.|++|+.+||.|.++++..+....++++.
T Consensus 34 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l-~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~ 112 (218)
T d2g9na1 34 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL-QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 112 (218)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhh-heecccccCccEEEEcccchhhhhHHHHHhhhccccceeEE
Confidence 69999999999999999 9999999999999999997 555 3567999999999999999999999999999998
Q ss_pred EEcCCCCHHH---HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 76 LIQRGMIPEE---RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 76 ~i~~~~~~~~---r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+..++..... +...-.+||+++||+++ .++|+.+ ....+ .+.++|+||||.|+ |..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl-~~~l~~~------~~~~~---~l~~lVlDEaD~ll-~~~---------- 171 (218)
T d2g9na1 113 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRV-FDMLNRR------YLSPK---YIKMFVLDEADEML-SRG---------- 171 (218)
T ss_dssp EECC--CCCSTTTSSSSCCCSEEEECHHHH-HHHHHTT------SSCST---TCCEEEEESHHHHH-HTT----------
T ss_pred eeecccchhHHHHHHhcCCCEEEEeCChhH-HHHHhcC------Ccccc---cceEEEeeecchhh-cCc----------
Confidence 8887644222 22234689999999987 3444321 12344 89999999999987 443
Q ss_pred CCCccchHHHHHHHHHccc
Q 005155 153 SKDVARYPVAAKVAELLVQ 171 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~~ 171 (711)
+...+..+.+.+++
T Consensus 172 -----f~~~~~~Il~~~~~ 185 (218)
T d2g9na1 172 -----FKDQIYDIFQKLNS 185 (218)
T ss_dssp -----CHHHHHHHHHHSCT
T ss_pred -----hHHHHHHHHHhCCC
Confidence 33467777777754
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.8e-17 Score=160.10 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=111.6
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHhhhcC-CeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Ltv~ 75 (711)
+|+|||..+++.+++|+ +++.+||+|||++|++|++-.... +..+.|++|+++||.+..+++..+...++ ++++
T Consensus 23 ~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~ 102 (207)
T d1t6na_ 23 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 102 (207)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeE
Confidence 69999999999999999 999999999999999999743332 34699999999999999999999999875 6777
Q ss_pred EEcCCCCHHH--HHh-ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCC
Q 005155 76 LIQRGMIPEE--RRS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (711)
Q Consensus 76 ~i~~~~~~~~--r~~-aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~ 152 (711)
+..++.+... ++. ...+||++|||+++ .++++.+ ...++ .+.++|+||||.||-+.+
T Consensus 103 ~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl-~~~~~~~------~~~l~---~l~~lVlDEaD~ll~~~~---------- 162 (207)
T d1t6na_ 103 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARNK------SLNLK---HIKHFILDECDKMLEQLD---------- 162 (207)
T ss_dssp EESCCSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEESHHHHHSSHH----------
T ss_pred EEeccccHHHHHHHHHhcCCCEEEeCcchh-hhhccCC------ceecc---ccceeehhhhhhhhhcCC----------
Confidence 7788776432 222 35789999999987 3444421 23345 899999999999972211
Q ss_pred CCCccchHHHHHHHHHcc
Q 005155 153 SKDVARYPVAAKVAELLV 170 (711)
Q Consensus 153 ~~~~~~y~~~~~i~~~l~ 170 (711)
+...+..+.+.++
T Consensus 163 -----~~~~i~~I~~~~~ 175 (207)
T d1t6na_ 163 -----MRRDVQEIFRMTP 175 (207)
T ss_dssp -----HHHHHHHHHHTSC
T ss_pred -----cHHHHHHHHHhCC
Confidence 3345667777765
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.68 E-value=3.4e-16 Score=157.32 Aligned_cols=143 Identities=18% Similarity=0.206 Sum_probs=115.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------------CCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------------GEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~------------G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
+|+++|..+++.+++|+ +++..||+|||++|++|++-+-+. +..+.|++|+++||.+-.+.+..+.
T Consensus 43 ~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~~~~~ 122 (238)
T d1wrba1 43 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 122 (238)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchheeeeecc
Confidence 69999999999999998 999999999999999999854432 3479999999999999999999999
Q ss_pred hhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCc
Q 005155 68 RFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (711)
Q Consensus 68 ~~LGLtv~~i~~~~~--~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tP 145 (711)
...++++..+.++.. .+.+...-.+||++|||++| .++++++ ...++ .+.++||||||.|| |.++
T Consensus 123 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l-~~~~~~~------~~~l~---~v~~lViDEaD~ll-~~~f-- 189 (238)
T d1wrba1 123 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRL-VDFIEKN------KISLE---FCKYIVLDEADRML-DMGF-- 189 (238)
T ss_dssp TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHH-HHHHHTT------SBCCT---TCCEEEEETHHHHH-HTTC--
T ss_pred cCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHH-HhHHccC------ceecc---ccceeeeehhhhhh-hhcc--
Confidence 999999999988754 44455667899999999987 3333332 22345 78999999999998 4433
Q ss_pred eeccCCCCCCccchHHHHHHHHHcc
Q 005155 146 LLISGEASKDVARYPVAAKVAELLV 170 (711)
Q Consensus 146 LiiSg~~~~~~~~y~~~~~i~~~l~ 170 (711)
...+..+.+.+.
T Consensus 190 -------------~~~i~~Il~~~~ 201 (238)
T d1wrba1 190 -------------EPQIRKIIEESN 201 (238)
T ss_dssp -------------HHHHHHHHHSSC
T ss_pred -------------HHHHHHHHHHhc
Confidence 346666766553
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.67 E-value=3.6e-16 Score=153.58 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=113.0
Q ss_pred CCchhHHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~Lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
+|+|+|..+.+.+++|+ |++..||.|||+++.+|+.-... .|..+.|++|+.+||.+-.+++..+...+++.+..
T Consensus 26 ~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~ 105 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 105 (208)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeeccccchhhhhhhhhhcccCCeEEEE
Confidence 69999999998877663 88999999999999999973222 35579999999999999999999999999999999
Q ss_pred EcCCCCHHH-HHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCCC
Q 005155 77 IQRGMIPEE-RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (711)
Q Consensus 77 i~~~~~~~~-r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~~ 155 (711)
..++.+... .+..-+|||++|||+.| .|+++.+ ....+ .+.++||||||.|+ |..
T Consensus 106 ~~g~~~~~~~~~~l~~~~IlV~TP~~l-~~~l~~~------~~~~~---~l~~lViDEad~l~-~~~------------- 161 (208)
T d1hv8a1 106 IYGGKAIYPQIKALKNANIVVGTPGRI-LDHINRG------TLNLK---NVKYFILDEADEML-NMG------------- 161 (208)
T ss_dssp ECTTSCHHHHHHHHHTCSEEEECHHHH-HHHHHTT------CSCTT---SCCEEEEETHHHHH-TTT-------------
T ss_pred eeCCCChHHHHHhcCCCCEEEEChHHH-HHHHHcC------CCCcc---cCcEEEEEChHHhh-cCC-------------
Confidence 988876433 33335799999999987 4544321 12244 89999999999986 432
Q ss_pred ccchHHHHHHHHHccc
Q 005155 156 VARYPVAAKVAELLVQ 171 (711)
Q Consensus 156 ~~~y~~~~~i~~~l~~ 171 (711)
.+..+.++.+.+++
T Consensus 162 --~~~~i~~I~~~~~~ 175 (208)
T d1hv8a1 162 --FIKDVEKILNACNK 175 (208)
T ss_dssp --THHHHHHHHHTSCS
T ss_pred --ChHHHHHHHHhCCC
Confidence 34567778777753
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=4.1e-17 Score=162.31 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=101.0
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE--
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI-- 77 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i-- 77 (711)
+|+++|..++..+++|+ ++.+.||+|||+++.+|+...+..|++|.+|+|+..|+.|.++++..+++.+|+++..+
T Consensus 43 ~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~ 122 (237)
T d1gkub1 43 EPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 122 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 69999999999999999 99999999999999999988888999999999999999999999999999999876433
Q ss_pred --cCCCCHHHHH----hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 78 --QRGMIPEERR----SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 78 --~~~~~~~~r~----~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.++.+...+. ....+||+++|+.. |.+++. ..+ .++++||||||+||
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~-----l~~~~~------~~~---~~~~vVvDE~d~~l 175 (237)
T d1gkub1 123 YYHGRIPKREKENFMQNLRNFKIVITTTQF-----LSKHYR------ELG---HFDFIFVDDVDAIL 175 (237)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHH-----HHHCST------TSC---CCSEEEESCHHHHH
T ss_pred eeecccchhhhhhhhccccccceeccChHH-----HHHhhh------hcC---CCCEEEEEChhhhh
Confidence 3333322222 34567999999854 444432 233 79999999999997
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=9.4e-16 Score=151.53 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=110.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
+|++||..+++.+++|+ +++.+||+|||++|++|++ +.+ .+..+.|++|+..||.+-.+.+..+....++.+.
T Consensus 32 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i-~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~ 110 (212)
T d1qdea_ 32 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 110 (212)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhH-hhhhccCCCcceEEEcccHHHhhhhhhhhccccccccccee
Confidence 69999999999999999 9999999999999999997 454 4568999999999999999999999999999998
Q ss_pred EEcCCCCHH-HHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 76 LIQRGMIPE-ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 76 ~i~~~~~~~-~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
...++.+.. ++...-++||++|||+.+ .+.+... ...++ .++++||||||.|+ |.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~IvI~TP~~l-----~~~~~~~--~~~l~---~l~~lVlDEad~ll-d~~------------ 167 (212)
T d1qdea_ 111 ACIGGTSFVEDAEGLRDAQIVVGTPGRV-----FDNIQRR--RFRTD---KIKMFILDEADEML-SSG------------ 167 (212)
T ss_dssp EECC----------CTTCSEEEECHHHH-----HHHHHTT--SSCCT---TCCEEEEETHHHHH-HTT------------
T ss_pred eEeeccchhHHHHHhcCCcEEEECCCcc-----ccccccC--ceecC---cceEEeehhhhhhc-ccc------------
Confidence 888775533 333334789999999876 2222221 22345 79999999999997 543
Q ss_pred CccchHHHHHHHHHccc
Q 005155 155 DVARYPVAAKVAELLVQ 171 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~ 171 (711)
+...+.++.+.+++
T Consensus 168 ---f~~~v~~I~~~~~~ 181 (212)
T d1qdea_ 168 ---FKEQIYQIFTLLPP 181 (212)
T ss_dssp ---CHHHHHHHHHHSCT
T ss_pred ---hHHHHHHHHHhCCC
Confidence 34577788887754
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=6.6e-16 Score=151.18 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=116.5
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHH---HcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNA---LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~A---L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~ 76 (711)
+|+++|..+++.+++|+ |++..||+|||++|++|+..+. ..+..+-+++++..++.+...++..+....++++..
T Consensus 23 ~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (206)
T d1s2ma1 23 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMV 102 (206)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccCeeEEe
Confidence 69999999999999999 9999999999999999997442 245578899999999999999999999999999999
Q ss_pred EcCCCCHHHH--HhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceeccCCCCC
Q 005155 77 IQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (711)
Q Consensus 77 i~~~~~~~~r--~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiSg~~~~ 154 (711)
..++.+.... ...-.+||+++||+.| .++|+. . ...++ .++++||||||.|+ |.+
T Consensus 103 ~~g~~~~~~~~~~l~~~~~Ili~TP~~l-~~~l~~----~--~~~l~---~l~~lV~DEaD~l~-~~~------------ 159 (206)
T d1s2ma1 103 TTGGTNLRDDILRLNETVHILVGTPGRV-LDLASR----K--VADLS---DCSLFIMDEADKML-SRD------------ 159 (206)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHT----T--CSCCT---TCCEEEEESHHHHS-SHH------------
T ss_pred ecCccchhhHHHHhcccceEEEECCccc-cccccc----c--eeecc---cceEEEeechhhhh-hhh------------
Confidence 9998775443 3446799999999987 344432 1 23345 89999999999996 432
Q ss_pred CccchHHHHHHHHHccc
Q 005155 155 DVARYPVAAKVAELLVQ 171 (711)
Q Consensus 155 ~~~~y~~~~~i~~~l~~ 171 (711)
+...+..+.+.+++
T Consensus 160 ---f~~~v~~I~~~l~~ 173 (206)
T d1s2ma1 160 ---FKTIIEQILSFLPP 173 (206)
T ss_dssp ---HHHHHHHHHTTSCS
T ss_pred ---hHHHHHHHHHhCCC
Confidence 44567777777753
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.49 E-value=7.4e-14 Score=135.70 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=107.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHhhhc----C
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL----G 71 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~----G~~VhVvT~NdyLA~RDae~~~~~y~~L----G 71 (711)
+|+++|..+++.+++|+ |++..||+|||++|.+|+. +.+. +..+.++.++..++..-++++.....++ +
T Consensus 23 ~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (209)
T d1q0ua_ 23 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM-EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 101 (209)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeec-cccccccccccccccccccchhHHHHHHHHhhhcccccccc
Confidence 69999999999999999 9999999999999999996 5553 4478899999999999998888777655 3
Q ss_pred CeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhhhhcCCCceecc
Q 005155 72 LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (711)
Q Consensus 72 Ltv~~i~~~~~~~~r~--~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~LiDea~tPLiiS 149 (711)
..+.+..++.+..... ...++||+++|++.+ .+. +... ..... .++++||||||.+| |.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l-~~~----~~~~--~~~~~---~l~~lViDEad~ll-~~~------- 163 (209)
T d1q0ua_ 102 IVARCLIGGTDKQKALEKLNVQPHIVIGTPGRI-NDF----IREQ--ALDVH---TAHILVVDEADLML-DMG------- 163 (209)
T ss_dssp CCEEEECCCSHHHHTTCCCSSCCSEEEECHHHH-HHH----HHTT--CCCGG---GCCEEEECSHHHHH-HTT-------
T ss_pred ccccccccchhhHHHHHHhccCceEEEecCchh-hhh----hhhh--ccccc---cceEEEEeeccccc-ccc-------
Confidence 5666666665433322 345689999999886 222 2221 12334 79999999999997 443
Q ss_pred CCCCCCccchHHHHHHHHHccc
Q 005155 150 GEASKDVARYPVAAKVAELLVQ 171 (711)
Q Consensus 150 g~~~~~~~~y~~~~~i~~~l~~ 171 (711)
+...+..+...+++
T Consensus 164 --------f~~~v~~I~~~~~~ 177 (209)
T d1q0ua_ 164 --------FITDVDQIAARMPK 177 (209)
T ss_dssp --------CHHHHHHHHHTSCT
T ss_pred --------cHHHHHHHHHHCCC
Confidence 34567777777754
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.44 E-value=1.2e-13 Score=132.20 Aligned_cols=128 Identities=19% Similarity=0.220 Sum_probs=103.0
Q ss_pred CCCchhHHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~Lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
+.|+|-|..+.-.+.+++ |+.+.||+|||+++++++..... .|+.+.+|+|+..|+.|.++.+..++...++.++...
T Consensus 8 ~~pr~~Q~~~~~~~~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (200)
T ss_dssp HCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CCCCHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeee
Confidence 369999999887776655 99999999999999988864443 4778999999999999999999999999999999888
Q ss_pred CCCCHHHHHhc-cCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 79 RGMIPEERRSN-YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 79 ~~~~~~~r~~a-Y~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
++....++... ..++|+++|+..+..++.++ ..... .++++|+||||.+.
T Consensus 88 ~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~-------~~~~~---~~~~vIiDE~H~~~ 138 (200)
T d1wp9a1 88 GEKSPEERSKAWARAKVIVATPQTIENDLLAG-------RISLE---DVSLIVFDEAHRAV 138 (200)
T ss_dssp SCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT-------SCCTT---SCSEEEEETGGGCS
T ss_pred cccchhHHHHhhhcccccccccchhHHHHhhh-------hhhcc---ccceEEEEehhhhh
Confidence 88887777665 45789999987764333222 12233 78999999999875
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=1.2e-12 Score=126.01 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCcC
Q 005155 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGR 415 (711)
Q Consensus 337 ~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAGR 415 (711)
.+...++++|.+..++|.++||||.|++.|+.|+..|.+.|+++..+|+++++.+|++.+-. +.| ...|.|||++|+|
T Consensus 15 ~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G-~~~vLVaT~v~~~ 93 (174)
T d1c4oa2 15 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLRE 93 (174)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCT
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCC-CeEEEEeeeeeee
Confidence 35566889998888899999999999999999999999999999999999888888877776 666 7789999999999
Q ss_pred Cccee
Q 005155 416 GTDII 420 (711)
Q Consensus 416 GTDIk 420 (711)
|+||.
T Consensus 94 GiDip 98 (174)
T d1c4oa2 94 GLDIP 98 (174)
T ss_dssp TCCCT
T ss_pred eccCC
Confidence 99995
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2.6e-12 Score=125.86 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=71.2
Q ss_pred eChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcC
Q 005155 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (711)
Q Consensus 333 ~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATn 411 (711)
....+|...+++.+.. ..+.++||||+|...++.|+..|...|+++..+|+++.+.+++..+-. +.| .-.|.|||+
T Consensus 12 ~~~~~k~~~L~~~l~~--~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~ilvaTd 88 (200)
T d1oywa3 12 MEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQIVVATV 88 (200)
T ss_dssp EECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECT
T ss_pred EcCCcHHHHHHHHHHh--cCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcc-cceEEEecc
Confidence 3455688888877765 467899999999999999999999999999999998777777766655 555 568999999
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
++|||+||.
T Consensus 89 ~~~~GiD~p 97 (200)
T d1oywa3 89 AFGMGINKP 97 (200)
T ss_dssp TSCTTTCCT
T ss_pred hhhhccCCC
Confidence 999999994
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.35 E-value=1.9e-12 Score=121.19 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=72.1
Q ss_pred EEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEE
Q 005155 331 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (711)
Q Consensus 331 i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIA 409 (711)
+.....+|+.++++.+.. .+.++||||+|.+.++.+++.|.+.|+++..+|+.+...+++..+.+ +.| ...|.||
T Consensus 9 i~v~~~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~-~~~ilv~ 84 (155)
T d1hv8a2 9 VEVNENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILIA 84 (155)
T ss_dssp EECCGGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEEE
T ss_pred EEeChHHHHHHHHHHHcc---CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcc-cceeeee
Confidence 345678899999877653 34579999999999999999999999999999998767777666666 455 6799999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|++++||+||.
T Consensus 85 T~~~~~Gid~~ 95 (155)
T d1hv8a2 85 TDVMSRGIDVN 95 (155)
T ss_dssp CTTHHHHCCCS
T ss_pred hhHHhhhhhhc
Confidence 99999999994
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.33 E-value=6.3e-12 Score=121.52 Aligned_cols=84 Identities=25% Similarity=0.319 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCCc
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAG 414 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmAG 414 (711)
..+...++.+|.+..+++.++||||++++.++.++..|++.|+++..+|+++++.+|+..+-. +.| .-.|.|||++|+
T Consensus 14 ~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g-~~~vLVaTdv~~ 92 (181)
T d1t5la2 14 KGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLR 92 (181)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHT-SCSEEEESCCCS
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCC-CCCEEEehhHHH
Confidence 455667888998888889999999999999999999999999999999999888888877766 677 779999999999
Q ss_pred CCccee
Q 005155 415 RGTDII 420 (711)
Q Consensus 415 RGTDIk 420 (711)
||+||.
T Consensus 93 rGiDip 98 (181)
T d1t5la2 93 EGLDIP 98 (181)
T ss_dssp SSCCCT
T ss_pred ccCCCC
Confidence 999994
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=1.7e-11 Score=116.51 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=75.6
Q ss_pred eEEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEE
Q 005155 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITIS 409 (711)
Q Consensus 330 ~i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIA 409 (711)
.++.+..+|..++.+.+.+ ..+.++||||+|...++.++..|...|+++..+|+++...+++..+-......-.|.||
T Consensus 11 yi~v~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~ 88 (171)
T d1s2ma2 11 YAFVEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVC 88 (171)
T ss_dssp EEECCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEcCHHHHHHHHHHHHHh--CCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccccccc
Confidence 4566778899999888765 35668999999999999999999999999999999887777777666644446789999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|+.++||+|+.
T Consensus 89 Td~~~~Gid~~ 99 (171)
T d1s2ma2 89 SDLLTRGIDIQ 99 (171)
T ss_dssp SSCSSSSCCCT
T ss_pred hhHhhhccccc
Confidence 99999999994
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.8e-11 Score=114.96 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=72.2
Q ss_pred EEeChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEE
Q 005155 331 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (711)
Q Consensus 331 i~~t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIA 409 (711)
+.....+|.+++++.+... .+..+||||++++.++.|++.|.+.|+++..+|+++...++...+-+ +.| .-.|.||
T Consensus 7 v~~~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g-~~~iLv~ 83 (168)
T d1t5ia_ 7 VKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVA 83 (168)
T ss_dssp EECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEE
T ss_pred EEeChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccc-cceeeec
Confidence 3456788999998877653 45679999999999999999999999999999998766666655554 556 5578999
Q ss_pred cCCCcCCccee
Q 005155 410 TNMAGRGTDII 420 (711)
Q Consensus 410 TnmAGRGTDIk 420 (711)
|++++||+|+.
T Consensus 84 T~~~~~Gid~~ 94 (168)
T d1t5ia_ 84 TNLFGRGMDIE 94 (168)
T ss_dssp SSCCSTTCCGG
T ss_pred cccccchhhcc
Confidence 99999999995
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=9.1e-11 Score=111.51 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=70.7
Q ss_pred ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCC
Q 005155 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNM 412 (711)
Q Consensus 334 t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnm 412 (711)
+.+.|..++++.+.. ..+.++||||++.+.++.++..|...|+++..+++++...+++..+.+ +.| ...|.|||++
T Consensus 17 ~~~~K~~~L~~ll~~--~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g-~~~iLv~Td~ 93 (168)
T d2j0sa2 17 REEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLISTDV 93 (168)
T ss_dssp STTHHHHHHHHHHHH--HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEEECGG
T ss_pred ChHHHHHHHHHHHHh--CCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC-CccEEeccch
Confidence 345699998877654 367799999999999999999999999999999998777777666555 566 6689999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
++||+||.
T Consensus 94 ~~rGiDi~ 101 (168)
T d2j0sa2 94 WARGLDVP 101 (168)
T ss_dssp GSSSCCCT
T ss_pred hccccccc
Confidence 99999994
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=1.1e-10 Score=110.33 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCC
Q 005155 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNM 412 (711)
Q Consensus 334 t~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnm 412 (711)
..+.|+..+.+.+.. ..+.++||||+|...++.+++.|...|+++..+++.+...+++..+-. +.| .-.|.|||++
T Consensus 10 ~~e~K~~~L~~ll~~--~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~-~~~iLv~Tdv 86 (162)
T d1fuka_ 10 EEEYKYECLTDLYDS--ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDL 86 (162)
T ss_dssp SGGGHHHHHHHHHHH--TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEEGG
T ss_pred CcHHHHHHHHHHHHh--CCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhc-ccceeecccc
Confidence 345588888776654 356789999999999999999999999999999998777777665555 455 5579999999
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
++||+||.
T Consensus 87 ~~rGiDi~ 94 (162)
T d1fuka_ 87 LARGIDVQ 94 (162)
T ss_dssp GTTTCCCC
T ss_pred ccccccCC
Confidence 99999995
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.13 E-value=3.1e-11 Score=116.37 Aligned_cols=125 Identities=21% Similarity=0.246 Sum_probs=94.3
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.|||.|.-+...+++|+ |+.+.||.|||.++.++++.....+++|.+++|+..|+.+-.+++.+++... ..++...+
T Consensus 25 ~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~~~L~~q~~~~~~~~~~~~-~~v~~~~~ 103 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIG-LRIGISTG 103 (202)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTT-CCEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhccCcceeecccHHHHHHHHHHHHHHhhcc-ccceeecc
Confidence 48899999999998888 9999999999999999987666678899999999999999999988776544 45555555
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+... .......++|+++|+..+.. +++.. ....+ .++++|+||+|.+.
T Consensus 104 ~~~~-~~~~~~~~~ii~~~~~~~~~-~~~~~------~~~~~---~~~~ii~DE~h~~~ 151 (202)
T d2p6ra3 104 DYES-RDEHLGDCDIIVTTSEKADS-LIRNR------ASWIK---AVSCLVVDEIHLLD 151 (202)
T ss_dssp SCBC-CSSCSTTCSEEEEEHHHHHH-HHHTT------CSGGG---GCCEEEETTGGGGG
T ss_pred Cccc-ccccccccceeeeccHHHHH-HHhcc------chhhh---hhhhccccHHHHhc
Confidence 4321 12233568999999877632 22221 12344 78999999999874
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=4.9e-10 Score=114.09 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=98.8
Q ss_pred chhHHHHHHHHh----C----CCeEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 005155 4 FDVQIIGGAVLH----D----GSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (711)
Q Consensus 4 ~dvQl~g~~~L~----~----G~IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~ 75 (711)
++-|..++--+. . .++.+=.||+|||.||+.+++.....|++|.+++|+.-||.|-++.+..+|..+|+.++
T Consensus 85 T~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~ 164 (264)
T d1gm5a3 85 TNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVA 164 (264)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEE
T ss_pred CchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccce
Confidence 455666555432 2 34999999999999999999877779999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 76 LIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 76 ~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
+..++++..+|+..+ .++|++||-+-| .+.+ ..+ ++.++||||-|..=
T Consensus 165 ~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~-----~~~~-------~f~---~LglviiDEqH~fg 218 (264)
T d1gm5a3 165 LLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI-----QEDV-------HFK---NLGLVIIDEQHRFG 218 (264)
T ss_dssp ECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH-----HHCC-------CCS---CCCEEEEESCCCC-
T ss_pred eeccccchHHHHHHHHHHHCCCCCEEEeehHHh-----cCCC-------Ccc---ccceeeeccccccc
Confidence 999999988887665 479999999765 3322 234 78999999998753
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=4.9e-10 Score=107.79 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=86.6
Q ss_pred CchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 005155 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (711)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~ 80 (711)
++|.|.-++.++++|+ |+.+.||.|||++|.+|+. ..++.+.+++|+..|+.+-.+.+... |...+.....
T Consensus 26 ~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~---~~~~~~~~v~P~~~L~~q~~~~l~~~----~~~~~~~~~~ 98 (206)
T d1oywa2 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL---LLNGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNST 98 (206)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHH---HSSSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhh---hccCceEEeccchhhhhhHHHHHHhh----cccccccccc
Confidence 4577999999999987 9999999999999999986 46788999999999999887766544 4455555444
Q ss_pred CCHHHHH------hccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 81 MIPEERR------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 81 ~~~~~r~------~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
....... ..-..+|+|+|+..+..+.... ..... .+.++|+||+|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~-------~~~~~---~v~~lviDEaH~~~ 152 (206)
T d1oywa2 99 QTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-------HLAHW---NPVLLAVDEAHCIS 152 (206)
T ss_dssp SCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-------HHTTS---CEEEEEESSGGGGC
T ss_pred cccccchhHHHHHhcCCceEEEEechhhhchhhcc-------cchhh---eeeeeeeeeeeeee
Confidence 4432222 2235789999987653322221 12233 79999999999875
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.94 E-value=6.1e-10 Score=102.87 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=52.2
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCccee
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (711)
++.++||||+|...++.|++.|++.|+++..+|+++.+.++ +.| ...|.||||.++||+|..
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~~------~~~-~~~vlvaTd~~~~GiD~~ 95 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVI------PTN-GDVVVVATDALMTGFTGD 95 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCCC------TTS-SCEEEEESSSSCSSSCCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhhh------hhh-hcceeehhHHHHhccccc
Confidence 56689999999999999999999999999999997544332 234 568999999999999843
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=2.2e-09 Score=107.36 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=97.8
Q ss_pred CchhHHHHHHHH----hCCC----eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 005155 3 HFDVQIIGGAVL----HDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (711)
Q Consensus 3 p~dvQl~g~~~L----~~G~----IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv 74 (711)
+++-|..+.-.+ ..++ +.+=.||+|||.||..+++...-.|++|.+++|+.-||.|-++.+...|..+|+.|
T Consensus 56 lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v 135 (233)
T d2eyqa3 56 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 135 (233)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCE
T ss_pred cchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEE
Confidence 345566655433 3343 99999999999999999986666899999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHhcc------CCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 75 GLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY------~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
.+..+..+..+|+..+ ..+|++||-+-+ .+. ...+ ++..+||||=|..
T Consensus 136 ~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l-----~~~-------~~f~---~LgLiIiDEeH~f 189 (233)
T d2eyqa3 136 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSD-------VKFK---DLGLLIVDEEHRF 189 (233)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSC-------CCCS---SEEEEEEESGGGS
T ss_pred EeccCcccchhHHHHHHHHhCCCCCEEEeehhhh-----ccC-------Cccc---cccceeeechhhh
Confidence 9999999988877665 469999998765 221 2234 7899999999963
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.73 E-value=2.1e-08 Score=101.23 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhh--hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCc--------chHhHHHHHH-hcCCCcc
Q 005155 337 GKWEYARQEVESMF--RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK--------YAAREAETVA-QAGRKYA 405 (711)
Q Consensus 337 ~K~~aIi~ei~~~~--~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~--------~~~~Ea~Iia-~AG~~G~ 405 (711)
.|...+.+.+.+.. ..+..|||||++...++.+++.|.+.|+++..+++... ..++...+-. +.| .-.
T Consensus 143 pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g-~~~ 221 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFN 221 (286)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SCS
T ss_pred cHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcC-CCc
Confidence 46666555554432 34568999999999999999999999999998876311 1223333333 566 457
Q ss_pred EEEEcCCCcCCccee
Q 005155 406 ITISTNMAGRGTDII 420 (711)
Q Consensus 406 VTIATnmAGRGTDIk 420 (711)
|.|||+.+|+|+||.
T Consensus 222 vLv~T~~~~~Gld~~ 236 (286)
T d1wp9a2 222 VLVATSVGEEGLDVP 236 (286)
T ss_dssp EEEECGGGGGGGGST
T ss_pred EEEEccceeccccCC
Confidence 999999999999994
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.57 E-value=3e-08 Score=95.18 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEcCCC
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIATnmA 413 (711)
...|..++.+.+.. ..+.++||||.++..++.|++.|.. ..++++....+|++.+-. +.| ...|.|+|+|+
T Consensus 77 ~~~K~~~l~~ll~~--~~~~k~lvf~~~~~~~~~l~~~l~~-----~~i~g~~~~~~R~~~l~~F~~~-~~~vLv~~~~~ 148 (200)
T d2fwra1 77 SKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFLI-----PAITHRTSREEREEILEGFRTG-RFRAIVSSQVL 148 (200)
T ss_dssp CSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTTC-----CBCCSSSCSHHHHTHHHHHHHS-SCSBCBCSSCC
T ss_pred cHHHHHHHHHHHHh--CCCCcEEEEeCcHHHHHHHHhhcCc-----ceeeCCCCHHHHHHHHHHhhcC-Ceeeeeecchh
Confidence 35688887766654 3578999999999999999988743 346777666677765554 556 55689999999
Q ss_pred cCCccee
Q 005155 414 GRGTDII 420 (711)
Q Consensus 414 GRGTDIk 420 (711)
|.|+|+.
T Consensus 149 ~~Gidl~ 155 (200)
T d2fwra1 149 DEGIDVP 155 (200)
T ss_dssp CSSSCSC
T ss_pred hcccCCC
Confidence 9999995
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=98.56 E-value=9.2e-08 Score=97.40 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=84.3
Q ss_pred CCchhHHHHHHHHhC-CC-eEEecCCCcHHHHHHHHHH-HHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 005155 2 RHFDVQIIGGAVLHD-GS-IAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (711)
Q Consensus 2 rp~dvQl~g~~~L~~-G~-IaEm~TGEGKTLva~Lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~ 78 (711)
.|.|-|.-++-.+++ ++ |+.+.||.|||+++.+.+. +..-.+.++.||+|+..|..|-++++..+...-...+..+.
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~~~ 192 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhccccccceeec
Confidence 578889888886654 33 9999999999998766553 22334568999999999999988888777654445566666
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++... ..+..-.++|+++|...+ .+ .. ..... .++++|+||||.+
T Consensus 193 ~g~~~-~~~~~~~~~i~i~t~qs~-----~~----~~-~~~~~---~f~~VIvDEaH~~ 237 (282)
T d1rifa_ 193 GGASK-DDKYKNDAPVVVGTWQTV-----VK----QP-KEWFS---QFGMMMNDECHLA 237 (282)
T ss_dssp TTCSS-TTCCCTTCSEEEECHHHH-----TT----SC-GGGGG---GEEEEEEETGGGC
T ss_pred ceecc-cccccccceEEEEeeehh-----hh----hc-ccccC---CCCEEEEECCCCC
Confidence 65432 222334578999996432 11 11 11233 7999999999975
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.48 E-value=4.8e-07 Score=87.27 Aligned_cols=110 Identities=20% Similarity=0.062 Sum_probs=74.4
Q ss_pred CCchhHHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 005155 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (711)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~ 79 (711)
.++|-|.-+.-.+.++. |..+.||.|||+++...+ +-.++++.||+|+..|+.|-.+.+..+ ..-.++...+
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~Liv~p~~~L~~q~~~~~~~~---~~~~~~~~~~ 143 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI---NELSTPTLIVVPTLALAEQWKERLGIF---GEEYVGEFSG 143 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHH---HHSCSCEEEEESSHHHHHHHHHHHGGG---CGGGEEEESS
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHH---HHhcCceeEEEcccchHHHHHHHHHhh---cccchhhccc
Confidence 46777888887776544 999999999999876443 234678999999999999866655443 3334555544
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
+. ....+|+.+|...+. . .. ..... .++++|+||+|.+
T Consensus 144 ~~-------~~~~~i~i~t~~~~~-----~----~~-~~~~~---~~~lvIiDEaH~~ 181 (206)
T d2fz4a1 144 RI-------KELKPLTVSTYDSAY-----V----NA-EKLGN---RFMLLIFDEVHHL 181 (206)
T ss_dssp SC-------BCCCSEEEEEHHHHH-----H----TH-HHHTT---TCSEEEEECSSCC
T ss_pred cc-------ccccccccceehhhh-----h----hh-HhhCC---cCCEEEEECCeeC
Confidence 32 124578888864331 1 11 12233 7899999999975
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=2.2e-08 Score=98.26 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHH--------HHHHHC---CCCeEEEeCCCcchHhHHHHHHhcCCCc
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS--------DLLKQQ---GIPHNVLNARPKYAAREAETVAQAGRKY 404 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls--------~~L~~~---gi~~~vLnA~~~~~~~Ea~Iia~AG~~G 404 (711)
.+|.+.+.+.|++..++|+.|-+.|+-|++|+.+. +.|.+. +++..++|+++++.++|..+-+..-..-
T Consensus 12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~ 91 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRY 91 (206)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSS
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCE
Confidence 34556677778777789999999999999888652 333333 4556789999999999988887443377
Q ss_pred cEEEEcCCCcCCccee
Q 005155 405 AITISTNMAGRGTDII 420 (711)
Q Consensus 405 ~VTIATnmAGRGTDIk 420 (711)
.|.|||+++++|+||+
T Consensus 92 ~iLVaTtViE~GIDip 107 (206)
T d1gm5a4 92 DILVSTTVIEVGIDVP 107 (206)
T ss_dssp SBCCCSSCCCSCSCCT
T ss_pred EEEEEehhhhcccccc
Confidence 9999999999999995
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.37 E-value=1.2e-07 Score=97.34 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=51.2
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhH----------HHHHH-hcCCCccEEEEcCCCcCCccee
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE----------AETVA-QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~E----------a~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (711)
+|..+||||+|...+|.|++.|++.|+....+|+++.+..+. ..+.. ..| .-.+.|+|+.+.||.|+.
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G-~~dvVVaT~~~a~g~~gi 113 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTG-DFDSVIDCNTCVTQTVDF 113 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCC-CBSEEEECCEEEEEEEEC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcC-CCcEEEEEeehhccCCCC
Confidence 477899999999999999999999999999999875554331 11111 233 336789999999988753
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.26 E-value=1.6e-06 Score=83.94 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHHhhhcCCcEEEEecchhhHHHHHHHHHHC--------------------------------CCCeEEEeCCCcchHhH
Q 005155 346 VESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--------------------------------GIPHNVLNARPKYAARE 393 (711)
Q Consensus 346 i~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--------------------------------gi~~~vLnA~~~~~~~E 393 (711)
+.+..+.|.|+||||+|...++.++..|.+. | ...+|+++...++
T Consensus 33 ~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~G--Ia~hh~~l~~~~r- 109 (201)
T d2p6ra4 33 VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG--AAFHHAGLLNGQR- 109 (201)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT--CCEECTTSCHHHH-
T ss_pred HHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhcc--HHHHHHHhhhhhH-
Confidence 3444567899999999999999888777652 2 2467887554444
Q ss_pred HHHHH---hcCCCccEEEEcCCCcCCccee
Q 005155 394 AETVA---QAGRKYAITISTNMAGRGTDII 420 (711)
Q Consensus 394 a~Iia---~AG~~G~VTIATnmAGRGTDIk 420 (711)
.++. +.| .-.|.|||+.+++|+|+.
T Consensus 110 -~~ie~~f~~g-~i~vlvaT~~l~~Gin~p 137 (201)
T d2p6ra4 110 -RVVEDAFRRG-NIKVVVATPTLAAGVNLP 137 (201)
T ss_dssp -HHHHHHHHTT-SCCEEEECSTTTSSSCCC
T ss_pred -HHHHHHHhCC-CceEEEechHHHhhcCCC
Confidence 3443 444 458999999999999995
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.24 E-value=3.1e-07 Score=80.52 Aligned_cols=102 Identities=16% Similarity=0.063 Sum_probs=61.7
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHH-HHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCC
Q 005155 16 DGS--IAEMKTGEGKTLVSTLAAYL-NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRC 92 (711)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~Lpa~l-~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~ 92 (711)
+|+ |+.|.||.|||+++..++.- ..-.+..+.|++|+..|+.+-++++ ...+..+....... ......
T Consensus 6 ~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~----~~~~~~~~~~~~~~-----~~~~~~ 76 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAF----HGLDVKFHTQAFSA-----HGSGRE 76 (140)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT----TTSCEEEESSCCCC-----CCCSSC
T ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHh----hhhhhhhccccccc-----cccccc
Confidence 455 89999999999887555432 2346788999999999988665543 33333333222211 112234
Q ss_pred CeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 93 DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
++...|...+ ++..+. ..... +++++|+||||.+
T Consensus 77 ~~~~~~~~~l----~~~~~~----~~~~~---~~~lvIiDEaH~~ 110 (140)
T d1yksa1 77 VIDAMCHATL----TYRMLE----PTRVV---NWEVIIMDEAHFL 110 (140)
T ss_dssp CEEEEEHHHH----HHHHTS----SSCCC---CCSEEEETTTTCC
T ss_pred chhhhhHHHH----HHHHhc----ccccc---ceeEEEEcccccc
Confidence 5555554333 221111 12233 8999999999974
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=6.1e-06 Score=80.73 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcc
Q 005155 341 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTD 418 (711)
Q Consensus 341 aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~--gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTD 418 (711)
.+.+.|.+..+.|..|-+.|+.++.++.+...|++. ++...++|++++..++|..+.+..-....|.|||.+...|+|
T Consensus 19 ~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiD 98 (211)
T d2eyqa5 19 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 98 (211)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSC
T ss_pred HHHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccC
Confidence 355666666688999999999999999999999884 678889999998888888887744447799999999999999
Q ss_pred ee
Q 005155 419 II 420 (711)
Q Consensus 419 Ik 420 (711)
|.
T Consensus 99 vp 100 (211)
T d2eyqa5 99 IP 100 (211)
T ss_dssp CT
T ss_pred CC
Confidence 95
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.17 E-value=2.8e-06 Score=87.31 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=50.5
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHHhcCCCccEEEEcCCCcCCcceec
Q 005155 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIIL 421 (711)
Q Consensus 352 ~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkL 421 (711)
.+..+||||+|+.+++.+++.|++.|.+.-+||++..+.+.+ -+ +.|. -.|.||||+|+.|+||.+
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~--~~-~~~~-~~~~~~t~~~~~~~~~~~ 100 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP--TI-KQKK-PDFILATDIAEMGANLCV 100 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC-----------CC-CSEEEESSSTTCCTTCCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh--hh-hcCC-cCEEEEechhhhceecCc
Confidence 355799999999999999999999999999999975443333 22 4553 479999999999999953
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.17 E-value=1.2e-06 Score=78.18 Aligned_cols=95 Identities=19% Similarity=0.153 Sum_probs=64.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEEC
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTN 98 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~~aY~~DI~YgT 98 (711)
|..+.||.|||+++. .+ ..-.|+.|.|++|+..|+++-++.+.. +++...+....+.. ..-..++++.|
T Consensus 12 ll~apTGsGKT~~~~--~~-~~~~~~~vli~~P~~~l~~q~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~ 80 (136)
T d1a1va1 12 HLHAPTGSGKSTKVP--AA-YAAQGYKVLVLNPSVAATLGFGAYMSK---AHGVDPNIRTGVRT-----ITTGSPITYST 80 (136)
T ss_dssp EEECCTTSCTTTHHH--HH-HHTTTCCEEEEESCHHHHHHHHHHHHH---HHSCCCEEECSSCE-----ECCCCSEEEEE
T ss_pred EEEeCCCCCHHHHHH--HH-HHHcCCcEEEEcChHHHHHHHHHHHHH---Hhhccccccccccc-----cccccceEEEe
Confidence 889999999997653 33 235788999999999999987766654 45566665554421 11234688887
Q ss_pred CCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhh
Q 005155 99 NSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (711)
Q Consensus 99 ~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~ 137 (711)
...+ ... .....+ +++++||||+|.+
T Consensus 81 ~~~~-----~~~-----~~~~~~---~~~~vIiDE~H~~ 106 (136)
T d1a1va1 81 YGKF-----LAD-----GGCSGG---AYDIIICDECHST 106 (136)
T ss_dssp HHHH-----HHT-----TGGGGC---CCSEEEEETTTCC
T ss_pred eeee-----ccc-----cchhhh---cCCEEEEeccccc
Confidence 5432 111 112344 8999999999974
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.95 E-value=2.3e-05 Score=76.96 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEEeCCCcchHhHHHHHH-hcCCCccEE-EEcCC
Q 005155 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYAIT-ISTNM 412 (711)
Q Consensus 336 ~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~-gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VT-IATnm 412 (711)
..|+.++++.+......|.+|||||......+.+...|.+. |+++..+++.....+|+..+-. +++....|. ++|..
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~ 147 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 147 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccc
Confidence 46999998888887889999999999999999999999765 8999999998766667766655 556444554 55688
Q ss_pred CcCCccee
Q 005155 413 AGRGTDII 420 (711)
Q Consensus 413 AGRGTDIk 420 (711)
+|.|.++.
T Consensus 148 ~g~Glnl~ 155 (244)
T d1z5za1 148 GGFGINLT 155 (244)
T ss_dssp TCCCCCCT
T ss_pred cccccccc
Confidence 88988874
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.90 E-value=3e-07 Score=91.14 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHhhhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCccEEEEc---
Q 005155 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST--- 410 (711)
Q Consensus 335 ~~~K~~aIi~ei~~~~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G~VTIAT--- 410 (711)
.++|+..+.+.+. .-|.++||||++.+.++.|++.|++. +|++..+.+++..+-+ +.| .-.|.|||
T Consensus 10 ~~~~~~~l~~~l~---~~~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g-~~~vLVaT~a~ 79 (248)
T d1gkub2 10 NDESISTLSSILE---KLGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEG-EIDHLIGTAHY 79 (248)
T ss_dssp SCCCTTTTHHHHT---TSCSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHT-SCSEEEEECC-
T ss_pred CchHHHHHHHHHH---HhCCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence 4567777766664 34778999999999999999999864 4565445555544444 567 45799999
Q ss_pred -CCCcCCccee
Q 005155 411 -NMAGRGTDII 420 (711)
Q Consensus 411 -nmAGRGTDIk 420 (711)
|+|+||+||.
T Consensus 80 ~~v~~rGlDip 90 (248)
T d1gkub2 80 YGTLVRGLDLP 90 (248)
T ss_dssp -----CCSCCT
T ss_pred cchhhhccCcc
Confidence 8999999993
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=97.65 E-value=0.00024 Score=73.83 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHh-hhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEEeCCCcchHhHHHHHH-hcCCCc--cEEEEcC
Q 005155 336 RGKWEYARQEVESM-FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITISTN 411 (711)
Q Consensus 336 ~~K~~aIi~ei~~~-~~~grPVLV~t~Si~~SE~Ls~~L~~~gi~~~vLnA~~~~~~~Ea~Iia-~AG~~G--~VTIATn 411 (711)
..|+..+.+.+... ...|..||||+.+....+.|...|...|+++..+++.....+|++.+-. +.+... -+.++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 45776655554443 3678899999999999999999999999999999998666666665555 455433 4778889
Q ss_pred CCcCCccee
Q 005155 412 MAGRGTDII 420 (711)
Q Consensus 412 mAGRGTDIk 420 (711)
.+|-|+++.
T Consensus 180 agg~GlnL~ 188 (346)
T d1z3ix1 180 AGGCGLNLI 188 (346)
T ss_dssp GSCTTCCCT
T ss_pred hhhhccccc
Confidence 999999873
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.95 E-value=0.0015 Score=62.66 Aligned_cols=115 Identities=19% Similarity=0.174 Sum_probs=64.2
Q ss_pred chhHHHHHHHH------hCCCeEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHhhhcC-CeE
Q 005155 4 FDVQIIGGAVL------HDGSIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSV 74 (711)
Q Consensus 4 ~dvQl~g~~~L------~~G~IaEm~TGEGKTLva~Lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Ltv 74 (711)
+|-|+.|+--| +.|-|.-..+|-|||+.+...+...... ...+.||||..-+.. |...+-.+.. ..+
T Consensus 14 ~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~~l~~~----W~~e~~~~~~~~~~ 89 (230)
T d1z63a1 14 RPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKN----WEEELSKFAPHLRF 89 (230)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHH----HHHHHHHHCTTSCE
T ss_pred hHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecchhhhhH----HHHHHHhhcccccc
Confidence 45588876322 2355887889999999765544322223 357999999655433 5444444443 344
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeechhhhh
Q 005155 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (711)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs~L 138 (711)
.......+ . ......||+..|-.. ++.. ...... +++++|+||+|.+-
T Consensus 90 ~~~~~~~~-~--~~~~~~~vvi~~~~~-----~~~~-----~~l~~~---~~~~vI~DEah~~k 137 (230)
T d1z63a1 90 AVFHEDRS-K--IKLEDYDIILTTYAV-----LLRD-----TRLKEV---EWKYIVIDEAQNIK 137 (230)
T ss_dssp EECSSSTT-S--CCGGGSSEEEEEHHH-----HTTC-----HHHHTC---CEEEEEEETGGGGS
T ss_pred eeeccccc-h--hhccCcCEEEeeHHH-----HHhH-----HHHhcc---cceEEEEEhhhccc
Confidence 43322211 1 122345777665322 2211 112223 78899999999874
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=96.63 E-value=0.0046 Score=61.66 Aligned_cols=118 Identities=25% Similarity=0.235 Sum_probs=63.9
Q ss_pred chhHHHHHHHHh-----------CCCeEEecCCCcHHHHHHH--HHHHHHH-----cCCCEEEEecCHHHHHHHHHHHHH
Q 005155 4 FDVQIIGGAVLH-----------DGSIAEMKTGEGKTLVSTL--AAYLNAL-----TGEGVHVVTVNDYLAQRDAEWMER 65 (711)
Q Consensus 4 ~dvQl~g~~~L~-----------~G~IaEm~TGEGKTLva~L--pa~l~AL-----~G~~VhVvT~NdyLA~RDae~~~~ 65 (711)
+|-|.-|+--|. .|-|.--..|-|||+.+.. ..++..- ..+.+.||+|+. |.. .|...
T Consensus 57 r~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~---qW~~E 132 (298)
T d1z3ix2 57 RPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVR---NWYNE 132 (298)
T ss_dssp CHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH-HHH---HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch-hhH---HHHHH
Confidence 455777765442 2446667789999985432 2221111 113599999986 433 37777
Q ss_pred HhhhcC--CeEEEEcCCCCHHHHHh----------ccCCCeEEECCCchhhHHHHHhhhcchhhhhcCCCCCccEEEeec
Q 005155 66 VHRFLG--LSVGLIQRGMIPEERRS----------NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDE 133 (711)
Q Consensus 66 ~y~~LG--Ltv~~i~~~~~~~~r~~----------aY~~DI~YgT~~elgfDyLrD~l~~~~~~~v~r~~R~~~~aIVDE 133 (711)
|-++++ +.+..+.++...+.+.. ....+|+..|-.. ++... +..... +++++|+||
T Consensus 133 i~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~-----~~~~~----~~l~~~---~~~~vI~DE 200 (298)
T d1z3ix2 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYET-----FRLHA----EVLHKG---KVGLVICDE 200 (298)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHH-----HHHHT----TTTTTS---CCCEEEETT
T ss_pred HHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecc-----cccch----hccccc---ceeeeeccc
Confidence 766664 44445554432221111 0123566665332 22211 112222 788999999
Q ss_pred hhhh
Q 005155 134 VDSV 137 (711)
Q Consensus 134 vDs~ 137 (711)
+|.+
T Consensus 201 aH~i 204 (298)
T d1z3ix2 201 GHRL 204 (298)
T ss_dssp GGGC
T ss_pred cccc
Confidence 9986
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.16 Score=52.06 Aligned_cols=70 Identities=24% Similarity=0.204 Sum_probs=49.0
Q ss_pred chhHHHHHHHHhCCCe--EEecCCCcHHHHH-HHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 005155 4 FDVQIIGGAVLHDGSI--AEMKTGEGKTLVS-TLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (711)
Q Consensus 4 ~dvQl~g~~~L~~G~I--aEm~TGEGKTLva-~Lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLt 73 (711)
.+-|..++...+.+++ ..=.-|+|||-+. .+...+..+ .|..|.+++||--=|.|-.+..+.....++..
T Consensus 150 ~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~ 225 (359)
T d1w36d1 150 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 225 (359)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred ccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcCch
Confidence 3568888887777774 4445789998653 232333333 46689999999999999888887776665543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.96 E-value=0.43 Score=45.14 Aligned_cols=83 Identities=20% Similarity=0.158 Sum_probs=58.4
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH-------HhccCCC-
Q 005155 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER-------RSNYRCD- 93 (711)
Q Consensus 22 m~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r-------~~aY~~D- 93 (711)
=.||.|||.+.+=.|+..+..|+.|.++|.-.|=+.= .|+++.+.+.+|+.+-.+....++..- ...-.+|
T Consensus 17 Gp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA-~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 95 (207)
T d1ls1a2 17 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA-REQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDL 95 (207)
T ss_dssp CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH-HHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchH-HHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhccCcc
Confidence 3699999986554455467889999999996665442 378889999999999887766554321 1234566
Q ss_pred eEEECCCchhhH
Q 005155 94 ITYTNNSELGFD 105 (711)
Q Consensus 94 I~YgT~~elgfD 105 (711)
|.+=|+++...|
T Consensus 96 vlIDTaGr~~~d 107 (207)
T d1ls1a2 96 ILVDTAGRLQID 107 (207)
T ss_dssp EEEECCCCSSCC
T ss_pred eeecccccchhh
Confidence 446788877654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.22 Score=47.57 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=45.1
Q ss_pred cCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 005155 23 KTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (711)
Q Consensus 23 ~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~ 82 (711)
.||.|||-+ +=|++. ..-.|+.|-+||...|=+. -.|+++.+.+.+|+.+-.+....+
T Consensus 17 ptGvGKTTTiAKLA~~-~~~~g~kV~lit~Dt~R~g-A~eQL~~~a~~l~v~~~~~~~~~d 75 (211)
T d2qy9a2 17 VNGVGKTTTIGKLARQ-FEQQGKSVMLAAGDTFRAA-AVEQLQVWGQRNNIPVIAQHTGAD 75 (211)
T ss_dssp CTTSCHHHHHHHHHHH-HHTTTCCEEEECCCTTCHH-HHHHHHHHHHHTTCCEECCSTTCC
T ss_pred CCCCCHHHHHHHHHHH-HHHCCCcEEEEeccccccc-chhhhhhhhhhcCCcccccccCCC
Confidence 699999975 445544 4578999999999888665 468889899999999876655544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.93 E-value=0.61 Score=44.30 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=54.2
Q ss_pred cCCCcHHHHH-HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-------HHhccCCC-
Q 005155 23 KTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-------RRSNYRCD- 93 (711)
Q Consensus 23 ~TGEGKTLva-~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~-------r~~aY~~D- 93 (711)
.||.|||.+. =|+++ ....|+.|-+||..-|=+-- .|+++.+.+.+|+.+-....+.++.. ....-++|
T Consensus 19 ptGvGKTTTiAKLAa~-~~~~~~kV~lit~Dt~R~gA-~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d~ 96 (213)
T d1vmaa2 19 VNGTGKTTSCGKLAKM-FVDEGKSVVLAAADTFRAAA-IEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 96 (213)
T ss_dssp CTTSSHHHHHHHHHHH-HHHTTCCEEEEEECTTCHHH-HHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHH-HHHCCCceEEEeecccccch-hHHHHHHhhhcCccccccCCCCcHHHHHHHHHHHHHHcCCCE
Confidence 5999999864 45554 46789999999998775543 37888899999999886665544321 11122445
Q ss_pred eEEECCCchhhH
Q 005155 94 ITYTNNSELGFD 105 (711)
Q Consensus 94 I~YgT~~elgfD 105 (711)
|.+=|+|+...|
T Consensus 97 ilIDTaGr~~~d 108 (213)
T d1vmaa2 97 VIIDTAGRLHTK 108 (213)
T ss_dssp EEEEECCCCSCH
T ss_pred EEEeccccccch
Confidence 445566665443
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=88.28 E-value=0.24 Score=51.77 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=35.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHh
Q 005155 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (711)
Q Consensus 19 IaEm~TGEGKTLva~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y 67 (711)
+..=-||+|||++. +.++. =.++++.|||+|.++|.+-++++..|+
T Consensus 35 ~l~GltGS~ka~~i--A~l~~-~~~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 35 TLLGATGTGKTFTI--SNVIA-QVNKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp EEEECTTSCHHHHH--HHHHH-HHTCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEeCCCCcHHHHHH--HHHHH-HhCCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 55557999999644 34333 358899999999999999888887765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=85.06 E-value=1.1 Score=42.39 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=50.5
Q ss_pred cCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH--HH-----hccCCC-
Q 005155 23 KTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE--RR-----SNYRCD- 93 (711)
Q Consensus 23 ~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~--r~-----~aY~~D- 93 (711)
.||.|||-+ +=|+++ ....|+.|-+||..-|=+-= .|++..+-+.+|+.+-......++.. ++ ....+|
T Consensus 20 ptGvGKTTTiAKLA~~-~~~~g~kV~lit~Dt~R~ga-~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~~~~~~~d~ 97 (211)
T d1j8yf2 20 VQGTGKATTAGKLAYF-YKKKGFKVGLVGADVYRPAA-LEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEI 97 (211)
T ss_dssp SCCC----HHHHHHHH-HHHTTCCEEEEECCCSSHHH-HHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHH-HHHCCCceEEEEeeccccch-hHHHHHhccccCcceeecccchhhhHHHHHHHHHhhccCCce
Confidence 699999975 446555 45789999999997665543 58889999999999887665544321 11 223455
Q ss_pred eEEECCCchhh
Q 005155 94 ITYTNNSELGF 104 (711)
Q Consensus 94 I~YgT~~elgf 104 (711)
|.+=|+|+-..
T Consensus 98 IlIDTaGr~~~ 108 (211)
T d1j8yf2 98 IIVDTAGRHGY 108 (211)
T ss_dssp EEEECCCSCCT
T ss_pred EEEecCCcCcc
Confidence 44557776443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=82.44 E-value=0.93 Score=42.76 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=53.0
Q ss_pred ecCCCcHHHH-HHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH-------hccCCC
Q 005155 22 MKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-------SNYRCD 93 (711)
Q Consensus 22 m~TGEGKTLv-a~Lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLtv~~i~~~~~~~~r~-------~aY~~D 93 (711)
=.||.|||-+ +=|+++ ....|+.|-+||.--|=+- -.|+++.+.+.+|+.+-....+.++..-- ..-.+|
T Consensus 13 GptGvGKTTTiaKLA~~-~~~~g~kV~lit~Dt~R~g-A~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d 90 (207)
T d1okkd2 13 GVNGVGKTTTIAKLGRY-YQNLGKKVMFCAGDTFRAA-GGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYD 90 (207)
T ss_dssp CSTTSSHHHHHHHHHHH-HHTTTCCEEEECCCCSSTT-HHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHH-HHHCCCcEEEEEecccccc-chhhHhhcccccCceEEeccCCccHHHHHHHHHHHHHHCCCC
Confidence 3699999975 556554 4578999999998655222 24788888999999987666555543211 112355
Q ss_pred -eEEECCCchhhH
Q 005155 94 -ITYTNNSELGFD 105 (711)
Q Consensus 94 -I~YgT~~elgfD 105 (711)
|.+=|+|+...|
T Consensus 91 ~ilIDTaGr~~~d 103 (207)
T d1okkd2 91 LLFVDTAGRLHTK 103 (207)
T ss_dssp EEEECCCCCCTTC
T ss_pred EEEcCccccchhh
Confidence 444677765433
|