Citrus Sinensis ID: 005161
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 711 | 2.2.26 [Sep-21-2011] | |||||||
| O65567 | 904 | Pentatricopeptide repeat- | yes | no | 0.873 | 0.686 | 0.696 | 0.0 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.869 | 0.754 | 0.232 | 2e-47 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.853 | 0.738 | 0.233 | 6e-45 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.924 | 0.754 | 0.221 | 9e-45 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.933 | 0.597 | 0.241 | 5e-44 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.786 | 0.667 | 0.241 | 1e-42 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.700 | 0.702 | 0.240 | 4e-41 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.784 | 0.765 | 0.235 | 1e-38 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.904 | 0.660 | 0.237 | 1e-38 | |
| Q0WPZ6 | 874 | Pentatricopeptide repeat- | no | no | 0.834 | 0.678 | 0.224 | 2e-38 |
| >sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/696 (69%), Positives = 594/696 (85%)
Query: 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAF 73
++Q+FNT+IYAC K+G V+L +KWFHMMLE V+PNVAT GMLMGLY+K+WNVEEAEFAF
Sbjct: 209 SYQVFNTVIYACTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAF 268
Query: 74 NQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133
+ MRK G+VCESAYS+MITIYTRL LY+KAEEVI L+++D+V LENWLVMLNAYSQQG
Sbjct: 269 SHMRKFGIVCESAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQG 328
Query: 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYR 193
K+E AE +LVSM AGFSPNI+AYNTL+TGYGK+ MEAAQ LF + ++GLEPDET+YR
Sbjct: 329 KMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYR 388
Query: 194 SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253
SMIEGWGRA NY EAK YY+ELK GYKPN+ NL+TLINL AKY D +GA+ T++DM +
Sbjct: 389 SMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGI 448
Query: 254 GCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM 313
GCQ+SSILG +LQAYEK G+ D VP +LKGS + H+ N TS S LVMAYVKHG++DD +
Sbjct: 449 GCQYSSILGIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCL 508
Query: 314 KVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTY 373
+L +K+W+D+ FE +LYHLLICSCK+SG L +AVKIY+H D + NLHI TMID Y
Sbjct: 509 GLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIY 568
Query: 374 SVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD 433
+VMG F+EAEKLYLNLKSSG+ LD I F++VVRMYVKAGSL++AC+VLE M++QKDI PD
Sbjct: 569 TVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPD 628
Query: 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD 493
YL+ DMLRIYQ+C + DKL +LYY+I KSGI WNQE+Y+CVINCCARALP+DELS F+
Sbjct: 629 VYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFE 688
Query: 494 EMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553
EM+++GFTPN +T NV+LD+YGKAKLFK+V +LF +AK+ G+VDVISYNTIIAAYG+NK+
Sbjct: 689 EMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKD 748
Query: 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613
+MSS ++ MQFDGFSVSLEAYN++LDAYGK+ QME F+++L+RMK+++ DHYTYNI
Sbjct: 749 YTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 808
Query: 614 MIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENG 673
MI+IYGEQGWI+EV VL ELKE GL PDLCSYNTLIKAYGI GMVE+AVGLVKEMR
Sbjct: 809 MINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRN 868
Query: 674 IEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
I PDK+TYTN++TAL+RND+FLEAIKWSLWMKQ+G+
Sbjct: 869 IIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMGI 904
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/640 (23%), Positives = 295/640 (46%), Gaps = 22/640 (3%)
Query: 84 ESAYSAMITIYTRLSLYEKAEEVIR----LIREDKVVPNLENWLV--MLNAYSQQGKLEE 137
ES S ++ L ++K + +R +++ L+N +V +++ ++G++
Sbjct: 132 ESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSS 191
Query: 138 AELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIE 197
A + ++E GFS ++ +Y +L++ + A +F +++ G +P TY ++
Sbjct: 192 AANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251
Query: 198 GWGRAGN-YREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256
+G+ G + + +++K G P+A TLI + + A ++M G
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFS 311
Query: 257 HSSIL-GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKV 315
+ + LL Y K+ R ++L + ++ + + L+ AY + G++D+AM++
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMEL 371
Query: 316 ---LGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDT 372
+ +K K VF Y L+ + +G + +A+ I+ M KPN+ I
Sbjct: 372 KNQMAEKGTKPDVF---TYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428
Query: 373 YSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEP 432
Y G FTE K++ + G+ D++ + ++ ++ + G + V + M K+ P
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM-KRAGFVP 487
Query: 433 DAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVF 492
+ + ++ Y +CG ++ +Y ++L +G+T + Y+ V+ AR ++ +V
Sbjct: 488 ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL 547
Query: 493 DEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKL--GLVD--VISYNTIIAAY 548
EM PN +T +L Y K + + S+A+++ G+++ + T++
Sbjct: 548 AEMEDGRCKPNELTYCSLLHAYANGK---EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC 604
Query: 549 GQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDH 608
+ L E++ GFS + NSM+ YG+ + VL MKE T
Sbjct: 605 SKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSM 664
Query: 609 YTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKE 668
TYN ++ ++ + +L E+ G++PD+ SYNT+I AY + DA + E
Sbjct: 665 ATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSE 724
Query: 669 MRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIG 708
MR +GI PD ITY I + + F EAI +M + G
Sbjct: 725 MRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG 764
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 144/617 (23%), Positives = 280/617 (45%), Gaps = 10/617 (1%)
Query: 90 MITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149
+ I R S Y A +++ I + + ++ + +L+AYS+ GK E+A + M+E G
Sbjct: 181 FVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMG 240
Query: 150 FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD----VGLEPDETTYRSMIEGWGRAGNY 205
SP +V YN ++ +GK M + R L + D GL+ DE T +++ R G
Sbjct: 241 PSPTLVTYNVILDVFGK---MGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLL 297
Query: 206 REAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL-GTL 264
REAK ++ ELK GY+P L+ + K A++ L +M C S+ L
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNEL 357
Query: 265 LQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDT 324
+ AY +AG + +++ + V+ N + + ++ AY K G D+A+K+ +
Sbjct: 358 VAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417
Query: 325 VFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEK 384
V Y+ ++ +K+ M PN TM+ GM +
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477
Query: 385 LYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIY 444
++ +KS G D F ++ Y + GS DA + M + Y +L
Sbjct: 478 VFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRA-GFNACVTTYNALLNAL 536
Query: 445 QQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNI 504
+ G + + G + Y ++ C A+ + R+ + + + P+
Sbjct: 537 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSW 596
Query: 505 ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMSSTVQE 563
+ L +L K + + F++ KK G D++ +N++++ + +N + ++
Sbjct: 597 MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILES 656
Query: 564 MQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGW 623
++ DG S L YNS++D Y + G+ + +L+ ++++ D +YN +I + +G
Sbjct: 657 IREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGL 716
Query: 624 INEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTN 683
+ E V +L+E+ E G+RP + +YNT + Y GM + +++ M +N P+++T+
Sbjct: 717 MQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKM 776
Query: 684 MITALQRNDKFLEAIKW 700
++ R K+ EA+ +
Sbjct: 777 VVDGYCRAGKYSEAMDF 793
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 156/703 (22%), Positives = 307/703 (43%), Gaps = 46/703 (6%)
Query: 48 PNVAT-FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106
P+V T M++G K + + E MRK A+SA T+ S ++ +
Sbjct: 131 PSVNTCIEMVLGCVKAN-KLREGYDVVQMMRKFKF--RPAFSAYTTLIGAFSAVNHSDMM 187
Query: 107 IRLIREDKVV---PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163
+ L ++ + + P + + ++ ++++G+++ A +L M+ + +IV YN +
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247
Query: 164 YGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIE-------------------------- 197
+GKV ++ A + F I+ GL+PDE TY SMI
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307
Query: 198 ---------GWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLD 248
G+G AG + EA + + G P+ ++ K + A+ +
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367
Query: 249 DMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF-NLTSCSILVMAYVKHG 307
+M + S L+ +AG+ D L+ S+ + LF N+ + +I+V K
Sbjct: 368 EMKKDAAPNLSTYNILIDMLCRAGKLDTAFE-LRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426
Query: 308 LIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMC 367
+D+A + + +K ++ + LI G + +A K+Y M D + N +
Sbjct: 427 KLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYT 486
Query: 368 TMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ 427
++I + G + K+Y ++ + DL + KAG + A+ E ++ +
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKAR 546
Query: 428 KDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDE 487
+ + PDA Y ++ + G ++ L+Y + + G + Y+ VI+ + +++
Sbjct: 547 RFV-PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNK 605
Query: 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIA 546
++ +EM GF P ++T ++D K LF AK + ++V+ Y+++I
Sbjct: 606 AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID 665
Query: 547 AYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTF 606
+G+ ++ ++E+ G + +L +NS+LDA K ++ + MKE CT
Sbjct: 666 GFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTP 725
Query: 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLV 666
+ TY I+I+ + N+ E+++ G++P SY T+I AG + +A L
Sbjct: 726 NQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALF 785
Query: 667 KEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
+ NG PD Y MI L ++ ++A ++ GL
Sbjct: 786 DRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 166/686 (24%), Positives = 316/686 (46%), Gaps = 22/686 (3%)
Query: 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAF 73
N +NTLI + ++ + F M V+P T+ + + Y KS + A F
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456
Query: 74 NQMRKLGLVCE-SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132
+M+ G+ A +A + + +A+++ +++ +VP+ + +M+ YS+
Sbjct: 457 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKV 516
Query: 133 GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTY 192
G+++EA +L M E G P+++ N+L+ K ++ A ++F+ +K++ L+P TY
Sbjct: 517 GEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTY 576
Query: 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLN 252
+++ G G+ G +EA ++ + G PN TL + K ++ A+ L M++
Sbjct: 577 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMD 636
Query: 253 MGCQHSSIL-GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDD 311
MGC T++ K G+ + + V + + L+ VK LI+D
Sbjct: 637 MGCVPDVFTYNTIIFGLVKNGQVKEAMCFFH-QMKKLVYPDFVTLCTLLPGVVKASLIED 695
Query: 312 AMKVLGDKRWKDTVFEDNLY-HLLICSCKDSGHLANAVKIYSHM---HIC-DGK----PN 362
A K++ + + NL+ LI S + NAV + IC DG P
Sbjct: 696 AYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPI 755
Query: 363 LHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLE 422
+ C +V G T EK +L G++ L + +++ ++A ++ A V
Sbjct: 756 IRYSCKH---NNVSGARTLFEKFTKDL---GVQPKLPTYNLLIGGLLEADMIEIAQDVFL 809
Query: 423 TMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARA 482
++ I PD Y +L Y + G +D+L LY ++ N ++ VI+ +A
Sbjct: 810 QVKSTGCI-PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKA 868
Query: 483 LPIDE-LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVIS 540
+D+ L +D M F+P T ++D K+ ++LF G +
Sbjct: 869 GNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAI 928
Query: 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600
YN +I +G+ ++ + + M +G L+ Y+ ++D G+++ + + +K
Sbjct: 929 YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC-GLRPDLCSYNTLIKAYGIAGMV 659
E+ D YN++I+ G+ + E + + E+K G+ PDL +YN+LI GIAGMV
Sbjct: 989 ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMV 1048
Query: 660 EDAVGLVKEMRENGIEPDKITYTNMI 685
E+A + E++ G+EP+ T+ +I
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALI 1074
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 142/587 (24%), Positives = 264/587 (44%), Gaps = 28/587 (4%)
Query: 90 MITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149
++T R + ++K E ++ + V P++ + +NA+ + GK+EEA + M EAG
Sbjct: 245 LLTSLVRANEFQKCCEAFDVVCKG-VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAG 303
Query: 150 FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAK 209
+PN+V +NT++ G G + A + + G+EP TY +++G RA +A
Sbjct: 304 VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAY 363
Query: 210 WYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ-HSSILGTLLQAY 268
+ KE+ G+ PN LI+ + A+ D M++ G SS TL++ Y
Sbjct: 364 FVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 423
Query: 269 EKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFED 328
K G+ DN R+LK L N S + ++ H + D A++ +G+ ++
Sbjct: 424 CKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGG 483
Query: 329 NLYHLLICSCKDSGHLANAVKIYSHM----HICDGKPN---LHIMCTMIDTYSVMGMFTE 381
L LI G + A++++ + D + + LH +C G E
Sbjct: 484 GLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCE-------AGKLDE 536
Query: 382 AEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDML 441
A ++ + G +D +++ ++ L +A L+ M K + ++PD Y Y ++
Sbjct: 537 AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK-RGLKPDNYTYSILI 595
Query: 442 RIYQQCGM-----LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496
CG+ +++ + ++G+ + Y +I+ C +A +E FDEM+
Sbjct: 596 -----CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM 650
Query: 497 QHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLE 555
PN + N ++ Y ++ +L K G+ + +Y ++I +E
Sbjct: 651 SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 710
Query: 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI 615
+EM+ +G ++ Y +++D YGK GQM + +LR M + + TY +MI
Sbjct: 711 EAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMI 770
Query: 616 DIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDA 662
Y G + E +L E++E G+ PD +Y I Y G V +A
Sbjct: 771 GGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 817
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/512 (24%), Positives = 237/512 (46%), Gaps = 14/512 (2%)
Query: 189 ETTYRSMIEGWGRAGNYREAKWYYKE--LKHLGYKPNASNLYTLINLHAKYEDEEGAVNT 246
E Y +I GR+ EA ++ L L Y LI A+ D E A+N
Sbjct: 167 ELLYSILIHALGRSEKLYEAFLLSQKQTLTPLTYN-------ALIGACARNNDIEKALNL 219
Query: 247 LDDMLNMGCQHSSILGTL-LQAYEKAGRTDNVP--RILKGSLYQHVLFNLTSCSILVMAY 303
+ M G Q + +L +Q+ ++ + D+V R+ K + ++ + ++M +
Sbjct: 220 IAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGF 279
Query: 304 VKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNL 363
K G A+++LG + + +I + DSG A ++ + KP
Sbjct: 280 AKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRT 339
Query: 364 HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET 423
++ Y G +AE + ++ G+ D +++++ YV AG + A VL+
Sbjct: 340 RAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKE 399
Query: 424 MEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL 483
ME D++P+++++ +L ++ G K + ++ G+ +++ Y+ VI+ +
Sbjct: 400 MEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFN 458
Query: 484 PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD-VISYN 542
+D FD ML G P+ +T N ++D + K ++F ++ G + +YN
Sbjct: 459 CLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYN 518
Query: 543 TIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602
+I +YG + + M + +M+ G ++ + +++D YGK G+ + L MK
Sbjct: 519 IMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSV 578
Query: 603 SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDA 662
YN +I+ Y ++G + V + GL+P L + N+LI A+G +A
Sbjct: 579 GLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEA 638
Query: 663 VGLVKEMRENGIEPDKITYTNMITALQRNDKF 694
+++ M+ENG++PD +TYT ++ AL R DKF
Sbjct: 639 FAVLQYMKENGVKPDVVTYTTLMKALIRVDKF 670
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/599 (23%), Positives = 255/599 (42%), Gaps = 41/599 (6%)
Query: 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGL-VCESAYSAMITIYTRLSLYEKAEEVI 107
N + F +L+ Y ++ + EA AF +R G V A +A+I R+ E A V
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223
Query: 108 RLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167
+ I V N+ +M+NA + GK+E+ L ++E G P+IV YNTL++ Y
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
Query: 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNL 227
ME A L ++ G P TY ++I G + G Y AK + E+ G P+++
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 228 YTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSI-LGTLLQAYEKAGRTDNVPRILKGSLY 286
+L+ K D DM + + +++ + ++G D
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 287 QHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLAN 346
++ + +IL+ Y + G+I AM + + + + Y+ ++ L
Sbjct: 404 AGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE 463
Query: 347 AVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVR 406
A K+++ M P+ + + +ID + +G A +L+ +K IRLD++ + ++
Sbjct: 464 ADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523
Query: 407 MYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT 466
+ K G DI+ ++ DM+ +IL + I+
Sbjct: 524 GFGKVG----------------DIDTAKEIWADMVS---------------KEILPTPIS 552
Query: 467 WNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKL 526
Y ++N + E RV+DEM+ P ++ N M+ Y ++
Sbjct: 553 -----YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESF 607
Query: 527 FSMAKKLGLV-DVISYNTIIAAYGQNKNLESMSSTVQEMQFD--GFSVSLEAYNSMLDAY 583
G V D ISYNT+I + + +N+ V++M+ + G + YNS+L +
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGF 667
Query: 584 GKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD 642
++ QM+ + VLR+M E D TY MI+ + Q + E + E+ + G PD
Sbjct: 668 CRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 162/683 (23%), Positives = 303/683 (44%), Gaps = 40/683 (5%)
Query: 41 MLECDVQPNVATFGMLMGLYKKSWNVE---------EAEFAFNQMR-------KLGLVCE 84
M+E +V +V T+ ML+ + ++ NV+ E EF + K ++C+
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271
Query: 85 S------AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN--WLVMLNAYSQQGKLE 136
Y +I ++ E A+ + L+ D + +L+N + ++++ + +
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSL--LVEMDSLGVSLDNHTYSLLIDGLLKGRNAD 329
Query: 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMI 196
A+ ++ M G + Y+ + K ME A+ LF + GL P Y S+I
Sbjct: 330 AAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLI 389
Query: 197 EGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256
EG+ R N R+ E+K + T++ D +GA N + +M+ GC+
Sbjct: 390 EGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCR 449
Query: 257 HSSIL-GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKV 315
+ ++ TL++ + + R + R+LK Q + ++ + L++ K +D+A
Sbjct: 450 PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF 509
Query: 316 LGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCT-MIDTYS 374
L + Y I ++ A+A K M C PN ++CT +I+ Y
Sbjct: 510 LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN-KVLCTGLINEYC 568
Query: 375 VMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDA 434
G EA Y ++ GI D +TV++ K + DA + M + K I PD
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREM-RGKGIAPDV 627
Query: 435 YLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDE 494
+ Y ++ + + G + K S ++ ++++ G+T N +Y+ ++ R+ I++ + DE
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Query: 495 MLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-DVISYNTIIAAYGQNKN 553
M G PN +T ++D Y K+ +LF K GLV D Y T++ + +
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747
Query: 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY---- 609
+E + T+ G + S +N++++ K G+ E VL R+ + S FD +
Sbjct: 748 VER-AITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGS--FDRFGKPN 804
Query: 610 --TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVK 667
TYNIMID ++G + + +++ L P + +Y +L+ Y G + +
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864
Query: 668 EMRENGIEPDKITYTNMITALQR 690
E GIEPD I Y+ +I A +
Sbjct: 865 EAIAAGIEPDHIMYSVIINAFLK 887
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 145/645 (22%), Positives = 286/645 (44%), Gaps = 52/645 (8%)
Query: 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMR 77
FN LI A CV+ + F M E +PN TFG+L+ Y K+ ++ N M
Sbjct: 150 FNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAME 209
Query: 78 KLGLVCESA-YSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136
G++ Y+ +++ + R + +E+++ +RE+ +VP++ + ++A ++GK+
Sbjct: 210 SFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVL 269
Query: 137 EAELVLVSMREAGF----SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTY 192
+A + M + PN + YN ++ G+ KV +E A+ LF SI++ +Y
Sbjct: 270 DASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSY 329
Query: 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLN 252
++G R G + EA+ K++ G P+ + L++ K A + M
Sbjct: 330 NIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR 389
Query: 253 MG-CQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDD 311
G C + G LL Y G+ D +L+ + + L N +C+IL+ + K G I +
Sbjct: 390 NGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE 449
Query: 312 AMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGK----------- 360
A ++L K + ++++ SG L A++I M +
Sbjct: 450 AEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIG 509
Query: 361 ------------PNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMY 408
P+L T+++ G F EA+ L+ + ++ D +A+ + + +
Sbjct: 510 LVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHF 569
Query: 409 VKAGSLKDACAVLETMEKQ---KDIEPDAYLYCDML---RIYQQCGMLDKLSYLYYKILK 462
K G + A VL+ MEK+ K +E L + +I++ G++D++ +
Sbjct: 570 CKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMK-------E 622
Query: 463 SGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKR 522
GI+ N Y+ I +++ + + DEM+Q PN+ + +++ + K F
Sbjct: 623 KGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDM 682
Query: 523 VRKLFSMA-----KKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYN 577
+++F A +K GL ++ +N ++AA K E + + + GF + Y
Sbjct: 683 AQEVFETAVSICGQKEGLYSLM-FNELLAAGQLLKATELLEAVLDR----GFELGTFLYK 737
Query: 578 SMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG 622
++++ K+ ++E +L +M + FD +ID G+ G
Sbjct: 738 DLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMG 782
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 711 | ||||||
| 255574996 | 955 | pentatricopeptide repeat-containing prot | 0.977 | 0.727 | 0.748 | 0.0 | |
| 359490053 | 900 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.785 | 0.737 | 0.0 | |
| 449457967 | 894 | PREDICTED: pentatricopeptide repeat-cont | 0.940 | 0.748 | 0.718 | 0.0 | |
| 224086334 | 670 | predicted protein [Populus trichocarpa] | 0.938 | 0.995 | 0.752 | 0.0 | |
| 356508382 | 854 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.810 | 0.708 | 0.0 | |
| 297802950 | 906 | pentatricopeptide repeat-containing prot | 0.988 | 0.775 | 0.685 | 0.0 | |
| 2980784 | 1075 | puative protein [Arabidopsis thaliana] g | 0.873 | 0.577 | 0.696 | 0.0 | |
| 18417671 | 904 | pentatricopeptide repeat-containing prot | 0.873 | 0.686 | 0.696 | 0.0 | |
| 357450749 | 785 | Pentatricopeptide repeat-containing prot | 0.981 | 0.889 | 0.652 | 0.0 | |
| 125563762 | 962 | hypothetical protein OsI_31412 [Oryza sa | 0.876 | 0.647 | 0.596 | 0.0 |
| >gi|255574996|ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532192|gb|EEF33997.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/709 (74%), Positives = 623/709 (87%)
Query: 1 MIREVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLY 60
MI EV S G++L+F++FNTLIYAC++RG + LG KWF MMLE VQPN+ATFGMLMGLY
Sbjct: 247 MIGEVSDSFGSELDFRVFNTLIYACSRRGNMLLGGKWFRMMLELGVQPNIATFGMLMGLY 306
Query: 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE 120
+K WNVEEAEF F++MR G++C+SAYSAMITIYTRLSLY KAEE+I L+ EDKV N+E
Sbjct: 307 QKGWNVEEAEFVFSKMRSFGIICQSAYSAMITIYTRLSLYNKAEEIIGLMGEDKVAMNVE 366
Query: 121 NWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180
NWLV+LNAYSQQG+LEEAE VLV M+EA FSPNIVA+NTL+TGYGK+SNM AAQRLFL I
Sbjct: 367 NWLVLLNAYSQQGRLEEAEQVLVEMQEASFSPNIVAFNTLITGYGKLSNMAAAQRLFLDI 426
Query: 181 KDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240
++ GLEPDETTYRSMIEGWGR GNY+EA+WYYKELK LGY PN+SNLYTLINL AK++D+
Sbjct: 427 QNAGLEPDETTYRSMIEGWGRTGNYKEAEWYYKELKRLGYMPNSSNLYTLINLQAKHDDD 486
Query: 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300
EGA+ TLDDML +GCQHSSILGTLL+AYEKAGR + VP +LK S YQHVL N TSCSILV
Sbjct: 487 EGAIGTLDDMLKIGCQHSSILGTLLKAYEKAGRINKVPLLLKDSFYQHVLVNQTSCSILV 546
Query: 301 MAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGK 360
M YVK+ L+D+A+KVLGDK+WKD FEDNLYHLLICSCK+ G+L +AV+IY+ M + K
Sbjct: 547 MTYVKNCLVDEALKVLGDKKWKDQTFEDNLYHLLICSCKELGNLESAVRIYTQMPKSEDK 606
Query: 361 PNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAV 420
PNLHI CT+ID YSV+G F EAEKLY LK SGI LD++AF++VVRMYVKAGSLKDAC+V
Sbjct: 607 PNLHISCTVIDIYSVLGCFAEAEKLYQQLKCSGIALDMVAFSIVVRMYVKAGSLKDACSV 666
Query: 421 LETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCA 480
L TMEKQ++I PD YLY DMLRIYQQCGM+ KL LY+KILKS + W+QELY+C+INCCA
Sbjct: 667 LATMEKQENIIPDIYLYRDMLRIYQQCGMMSKLKDLYHKILKSEVDWDQELYNCIINCCA 726
Query: 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS 540
RALP+ ELSR+F EMLQ GF+PN IT NVMLD+YGKAKLF + ++LF MA+K GLVDVIS
Sbjct: 727 RALPVGELSRLFSEMLQRGFSPNTITFNVMLDVYGKAKLFNKAKELFWMARKRGLVDVIS 786
Query: 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600
YNT+IAAYG NK+ ++M+S V+ MQFDGFSVSLEAYN MLD YGKEGQME F+NVL+RMK
Sbjct: 787 YNTVIAAYGHNKDFKNMASAVRNMQFDGFSVSLEAYNCMLDGYGKEGQMECFRNVLQRMK 846
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVE 660
++S T DHYTYNIMI+IYGEQGWI+EV GVLTEL+ECGLRPDLCSYNTLIKAYG+AGMVE
Sbjct: 847 QSSYTSDHYTYNIMINIYGEQGWIDEVAGVLTELRECGLRPDLCSYNTLIKAYGVAGMVE 906
Query: 661 DAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
DA+ LVKEMRENGIEPDKITY+N+ITALQ+NDK+LEA+KWSLWMKQ+GL
Sbjct: 907 DAIDLVKEMRENGIEPDKITYSNLITALQKNDKYLEAVKWSLWMKQLGL 955
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490053|ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Vitis vinifera] gi|297745081|emb|CBI38673.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1116 bits (2886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/709 (73%), Positives = 620/709 (87%), Gaps = 2/709 (0%)
Query: 1 MIREVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLY 60
MI E+ ++NFQ++NTLIYAC K+G VELG KWF +MLE V+PNVATFGM+M LY
Sbjct: 194 MIWEMNGDSDCQVNFQVYNTLIYACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLY 253
Query: 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE 120
+K WNV ++E+AF+QMR G+ C+SAYSAMITIYTR+SLY+KAEEVI I+EDKV+ NLE
Sbjct: 254 QKGWNVADSEYAFSQMRSFGITCQSAYSAMITIYTRMSLYDKAEEVIDFIQEDKVILNLE 313
Query: 121 NWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180
NWLV+LNAYSQQGKL+EAE VL SM+ AGFSPNIVAYN L+TGYGK SNM+AAQ +F ++
Sbjct: 314 NWLVLLNAYSQQGKLQEAERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNL 373
Query: 181 KDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240
K+VGLEPDE+TYRSMIEGWGRA NY+EA+WYY ELK LG+KPN+SNLYT+INL AKY D
Sbjct: 374 KNVGLEPDESTYRSMIEGWGRAENYKEAEWYYNELKRLGFKPNSSNLYTMINLQAKYADG 433
Query: 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300
E A TLDDM +GCQ+SS+LGTLLQAYE+AGR D VP ILKGS Y++VL N TSCSILV
Sbjct: 434 EDAARTLDDMKRIGCQYSSVLGTLLQAYERAGRIDRVPLILKGSFYEYVLVNQTSCSILV 493
Query: 301 MAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGK 360
MAYVKH L+DDA+KVL +K+WKDT+FEDNLYHL+ICSCK+ G L NAVKIYS M + K
Sbjct: 494 MAYVKHCLVDDAIKVLQEKQWKDTIFEDNLYHLVICSCKELGRLENAVKIYSQMP--NKK 551
Query: 361 PNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAV 420
PNLHIMCTMID YS +G F++AE LYL LKSS I LD+IAF++VVRMYVK+GSLKDAC+V
Sbjct: 552 PNLHIMCTMIDIYSTLGRFSDAENLYLKLKSSEISLDMIAFSIVVRMYVKSGSLKDACSV 611
Query: 421 LETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCA 480
LETM++QK+I PD YL+CDMLRIYQQCGMLDKL LYY+ILK+G+TW+ E+Y+CVINCCA
Sbjct: 612 LETMDEQKNIVPDIYLFCDMLRIYQQCGMLDKLQDLYYRILKTGVTWDSEMYNCVINCCA 671
Query: 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS 540
RALP+DELSR+FDEML HGF PN ITLNVMLD+YGK++LFK+ RK+ +A+K GLVDVIS
Sbjct: 672 RALPVDELSRLFDEMLLHGFAPNTITLNVMLDVYGKSRLFKKARKVLWLARKRGLVDVIS 731
Query: 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600
YNTIIAAYGQ+K+L+ M STV++MQF+GFSVSLE YN MLD+YGKEGQ+E+F++VLRRMK
Sbjct: 732 YNTIIAAYGQSKDLKKMLSTVRQMQFNGFSVSLEVYNCMLDSYGKEGQIESFRSVLRRMK 791
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVE 660
E+SC DHYTYNIMI+IYGEQGWI EV VLTELKE GL PDLCSYNTLIKAYGIAGMVE
Sbjct: 792 ESSCASDHYTYNIMINIYGEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIAGMVE 851
Query: 661 DAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
DAV LVKEMRENGI+PD+ITY N+I AL++ND+FLEA+KWSLWMKQ+GL
Sbjct: 852 DAVVLVKEMRENGIQPDRITYINLINALRKNDEFLEAVKWSLWMKQMGL 900
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457967|ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/707 (71%), Positives = 609/707 (86%)
Query: 1 MIREVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLY 60
+I EVR LG++L+FQ+FNTLIYAC K VE G KWF MMLEC VQPNVATFGMLMGLY
Sbjct: 186 LIEEVRAELGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLMGLY 245
Query: 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE 120
+K +++E+EFAFNQMR G+VCE+AY++MITIY R++LY+KAEEVI+L++EDKV+PNLE
Sbjct: 246 QKKCDIKESEFAFNQMRNFGIVCETAYASMITIYIRMNLYDKAEEVIQLMQEDKVIPNLE 305
Query: 121 NWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180
NW+VMLNAY QQGK+EEAELV SM EAGFS NI+AYNTL+TGYGK SNM+ AQRLFL I
Sbjct: 306 NWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGI 365
Query: 181 KDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240
K+ G+EPDETTYRSMIEGWGRAGNY+ A+WYYKELK GY PN+SNL+TLINL AK+EDE
Sbjct: 366 KNSGVEPDETTYRSMIEGWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDE 425
Query: 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300
G + TL+DML +GC+ SSI+G +LQAYEKA R +VP +L GS Y+ VL + TSCSILV
Sbjct: 426 AGTLKTLNDMLKIGCRPSSIVGNVLQAYEKARRMKSVPVLLTGSFYRKVLSSQTSCSILV 485
Query: 301 MAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGK 360
MAYVKH L+DDA+KVL +K WKD FE+NLYHLLICSCK+ GHL NA+KIY+ + + K
Sbjct: 486 MAYVKHCLVDDALKVLREKEWKDHHFEENLYHLLICSCKELGHLENAIKIYTQLPKRENK 545
Query: 361 PNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAV 420
PNLHI CTMID YS+MG F++ EKLYL+L+SSGI LDLIA+ VVVRMYVKAGSL+DAC+V
Sbjct: 546 PNLHITCTMIDIYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSV 605
Query: 421 LETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCA 480
L+ M +Q+DI PD YL DMLRIYQ+CGM+ KL+ LYY+ILKSG++W+QE+Y+CVINCC+
Sbjct: 606 LDLMAEQQDIVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSWDQEMYNCVINCCS 665
Query: 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS 540
RALP+DELSR+FDEMLQ GF PN +TLNVMLD+YGK+KLF + R LF +A+K GLVD IS
Sbjct: 666 RALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGLVDAIS 725
Query: 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600
YNT+I+ YG+NK+ ++MSSTVQ+M+F+GFSVSLEAYN MLDAYGKE QMENF++VL+RM+
Sbjct: 726 YNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQ 785
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVE 660
ETS DHYTYNIMI+IYGEQGWI+EV VLTELK CGL PDL SYNTLIKAYGIAGMVE
Sbjct: 786 ETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVE 845
Query: 661 DAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQI 707
+A LVKEMRE IEPD+ITY NMI ALQRND+FLEA+KWSLWMKQ+
Sbjct: 846 EAAQLVKEMREKRIEPDRITYINMIRALQRNDQFLEAVKWSLWMKQM 892
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086334|ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|222853828|gb|EEE91375.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/670 (75%), Positives = 591/670 (88%)
Query: 40 MMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL 99
MMLE VQPNVATFGM+MGLY+K WNVEEAEF+F QMR G++C+SAYSAMITIYTRLSL
Sbjct: 1 MMLELGVQPNVATFGMVMGLYQKGWNVEEAEFSFAQMRSFGIICQSAYSAMITIYTRLSL 60
Query: 100 YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNT 159
Y+KAEEVI L+R+DKVV NLENWLV+LNAYSQQGKLE+AE +LV+M+EA FSP IVAYN
Sbjct: 61 YDKAEEVIGLMRDDKVVLNLENWLVLLNAYSQQGKLEKAEQLLVAMQEAKFSPTIVAYNI 120
Query: 160 LMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219
L+TGYGK SNM AAQRLF I++ GLEPD+TTYRSMIEGWGR GNY+EA+WYYKELK LG
Sbjct: 121 LITGYGKASNMVAAQRLFSGIQNAGLEPDDTTYRSMIEGWGRVGNYKEAEWYYKELKRLG 180
Query: 220 YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPR 279
+KPN+ NLYTLINL A++ DEEGA TLDDML +GCQ+SSILGTLL+AYEK GR D +P
Sbjct: 181 FKPNSPNLYTLINLQAEHGDEEGACRTLDDMLKIGCQYSSILGTLLKAYEKVGRIDKIPF 240
Query: 280 ILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCK 339
+LKGS YQHV N SCSILV+AYVK+ L+D+A+K+LGDK+W D VFEDNLYHLLICSCK
Sbjct: 241 LLKGSFYQHVTVNQNSCSILVIAYVKNLLVDEAIKLLGDKKWNDPVFEDNLYHLLICSCK 300
Query: 340 DSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI 399
+ GHL +AVKIYS M D +PNLHI CTMID Y+ MG F E EKLY+ LKSSGI LD+I
Sbjct: 301 ELGHLDSAVKIYSLMPKSDDRPNLHISCTMIDIYTTMGQFNEGEKLYMKLKSSGIGLDVI 360
Query: 400 AFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYK 459
AF++V+RMYVKAGSLKDAC+VLETMEK+KD+ PD YL+ DMLR+YQQCGM+DKL+ LY+K
Sbjct: 361 AFSIVIRMYVKAGSLKDACSVLETMEKEKDMVPDIYLFRDMLRVYQQCGMMDKLNDLYFK 420
Query: 460 ILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKL 519
ILKSG+ W+QELY+C+INCCARALP+ ELSR+F+EMLQ GF PN IT NVMLD+Y KAKL
Sbjct: 421 ILKSGVVWDQELYNCLINCCARALPVGELSRLFNEMLQRGFDPNTITFNVMLDVYAKAKL 480
Query: 520 FKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSM 579
F + R+LF MA+K GLVDVISYNTIIAAYG+ ++ ++M+ST+ MQFDGFSVSLEAYN +
Sbjct: 481 FNKARELFMMARKRGLVDVISYNTIIAAYGRKRDFKNMASTIHTMQFDGFSVSLEAYNCV 540
Query: 580 LDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL 639
LDAYGKEGQME+F++VL+RMK +SCT DHYTYNIM++IYGE GWI+EV GVLTEL+ECGL
Sbjct: 541 LDAYGKEGQMESFRSVLQRMKNSSCTADHYTYNIMMNIYGELGWIDEVAGVLTELRECGL 600
Query: 640 RPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIK 699
PDLCSYNTLIKAYGIAGMVEDAVGLVKEMR+NG+EPDKITYTN+IT LQ+NDK+LEA+K
Sbjct: 601 GPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRQNGVEPDKITYTNLITTLQKNDKYLEAVK 660
Query: 700 WSLWMKQIGL 709
WSLWMKQ GL
Sbjct: 661 WSLWMKQRGL 670
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508382|ref|XP_003522936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/693 (70%), Positives = 593/693 (85%), Gaps = 1/693 (0%)
Query: 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMR 77
FNTLIYAC K+ V+LG KWF MML+C V PNVAT GMLMGLY+K WN+EEAEFAF++MR
Sbjct: 162 FNTLIYACCKQSLVQLGTKWFRMMLDCGVVPNVATIGMLMGLYRKGWNLEEAEFAFSRMR 221
Query: 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEE 137
+VCESAYS+MITIYTRL LYEKAE VI L+R+D+VVPNLENWLVMLNAYSQQGKL +
Sbjct: 222 GFRIVCESAYSSMITIYTRLRLYEKAEGVIELMRKDEVVPNLENWLVMLNAYSQQGKLGD 281
Query: 138 AELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI-KDVGLEPDETTYRSMI 196
AE VL +M+EAGFS NIVA+NT++TG+GK M+AAQRLF+ I + + ++PDETTYRSMI
Sbjct: 282 AERVLEAMQEAGFSDNIVAFNTMITGFGKARRMDAAQRLFMRITRCLEVDPDETTYRSMI 341
Query: 197 EGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256
EGWGRA NY A YYKELK +G+KP++SNL+TLI L A Y D+EGAV LDDM++ GC
Sbjct: 342 EGWGRADNYEYATRYYKELKQMGFKPSSSNLFTLIKLEANYGDDEGAVGILDDMVDCGCH 401
Query: 257 HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVL 316
++SI+GTLL YE+A + VPR+LKGS YQHVL N +SCS LVMAYVKH L++DA+KVL
Sbjct: 402 YASIIGTLLHVYERAAKVHKVPRLLKGSFYQHVLVNQSSCSTLVMAYVKHRLVEDALKVL 461
Query: 317 GDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVM 376
DK+W+D +EDNLYHLLICSCK++G L +AVKIYS M D PN+HI CTMID YSVM
Sbjct: 462 NDKKWQDPRYEDNLYHLLICSCKEAGLLEDAVKIYSRMPKSDDNPNMHIACTMIDIYSVM 521
Query: 377 GMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYL 436
G+F +AE LYL LKSSG+ LD+IAF++VVRMYVKAG+LKDACAVL+ ++ + DI PD +L
Sbjct: 522 GLFKDAEVLYLKLKSSGVALDMIAFSIVVRMYVKAGALKDACAVLDAIDMRPDIVPDKFL 581
Query: 437 YCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496
CDMLRIYQ+C M KL+ LYYKI KS W+QELY+CV+NCCA+ALP+DELSR+FDEM+
Sbjct: 582 LCDMLRIYQRCNMATKLADLYYKISKSREDWDQELYNCVLNCCAQALPVDELSRLFDEMV 641
Query: 497 QHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLES 556
QHGF P+ IT NVMLD++GKAKLF +V +L+ MAKK GLVDVI+YNTIIAAYG+NK+ +
Sbjct: 642 QHGFAPSTITFNVMLDVFGKAKLFNKVWRLYCMAKKQGLVDVITYNTIIAAYGKNKDFNN 701
Query: 557 MSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMID 616
MSSTVQ+M+FDGFSVSLEAYNSMLDAYGK+GQME F++VL++MK+++C DHYTYN +I+
Sbjct: 702 MSSTVQKMEFDGFSVSLEAYNSMLDAYGKDGQMETFRSVLQKMKDSNCASDHYTYNTLIN 761
Query: 617 IYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676
IYGEQGWINEV VLTELKECGLRPDLCSYNTLIKAYGIAGMV +AVGL+KEMR+NGIEP
Sbjct: 762 IYGEQGWINEVANVLTELKECGLRPDLCSYNTLIKAYGIAGMVAEAVGLIKEMRKNGIEP 821
Query: 677 DKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
DK +YTN+ITAL+RNDKFLEA+KWSLWMKQ+ +
Sbjct: 822 DKKSYTNLITALRRNDKFLEAVKWSLWMKQMKI 854
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802950|ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315195|gb|EFH45618.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/709 (68%), Positives = 602/709 (84%)
Query: 1 MIREVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLY 60
+I E+ G + +FQ+FNT+IYAC K+G V+L +KWF MMLE V+PNVAT GMLMGLY
Sbjct: 198 LIEELCGFQGFQQSFQVFNTVIYACTKKGNVKLASKWFQMMLELGVRPNVATIGMLMGLY 257
Query: 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE 120
+K+WNV+EAEFAF+ MRK +VCESAYS+MITIYTRL LYEKAEEVI L+++D+V LE
Sbjct: 258 QKNWNVDEAEFAFSHMRKFEIVCESAYSSMITIYTRLRLYEKAEEVINLMKQDRVRLKLE 317
Query: 121 NWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180
NWLVMLNAYSQQGK+E+AE VL+SM AGF+PNI+AYNTL+TGYGKVS MEAA+ LF +
Sbjct: 318 NWLVMLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRL 377
Query: 181 KDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240
D+GLEPDET+YRSMIEGWGRA NY EA YY+ELK GYKPN+SNL+TLINL AKY D
Sbjct: 378 SDIGLEPDETSYRSMIEGWGRADNYEEANHYYQELKRCGYKPNSSNLFTLINLQAKYGDR 437
Query: 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300
+GA+ T++DM ++GCQ+ SILG +LQAYEK G+ D VP +LKGS + H+ N TS SILV
Sbjct: 438 DGAIKTIEDMTSIGCQYPSILGIILQAYEKVGKIDVVPYLLKGSFHNHIRLNQTSFSILV 497
Query: 301 MAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGK 360
MAY+KHG++DD + +L +K+W+D+ FE +LYHLLICSCK+SG L +AVK+Y+H D +
Sbjct: 498 MAYIKHGMVDDCLALLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKLYNHTMESDEE 557
Query: 361 PNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAV 420
NLHI TMID Y+VMG F EAEKLYLNLKSSG+ LD I F++VVRMYVKAGSL++AC+V
Sbjct: 558 INLHITSTMIDIYTVMGEFGEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSV 617
Query: 421 LETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCA 480
LE M++QKDI PD YL+ DMLRIYQ+C + DKL +LYY+I KSGI W+QE+Y+CVINCCA
Sbjct: 618 LEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWDQEMYNCVINCCA 677
Query: 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS 540
RALP+DELSR F+EM+++GFTPN +T NV+LD+YGKAKLFK+V +LF +AK+ G+VDVIS
Sbjct: 678 RALPLDELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVIS 737
Query: 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600
YNTIIAAYG+NK+ +MSS ++ MQFDGFSVSLEAYN++LDAYGK+ QME F+++L+RMK
Sbjct: 738 YNTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMK 797
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVE 660
+++ DHYTYNIMI+IYGEQGWI+EV GVL ELKE GL PDLCSYNTLIKAYGI GMVE
Sbjct: 798 KSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 857
Query: 661 DAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
+AVGLVKEMR I PDK+TYTN++TAL++ND+FLEAIKWSLWMKQ+G+
Sbjct: 858 EAVGLVKEMRGKNITPDKVTYTNLVTALRKNDEFLEAIKWSLWMKQMGI 906
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2980784|emb|CAA18211.1| puative protein [Arabidopsis thaliana] gi|7269983|emb|CAB79800.1| puative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/696 (69%), Positives = 594/696 (85%)
Query: 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAF 73
++Q+FNT+IYAC K+G V+L +KWFHMMLE V+PNVAT GMLMGLY+K+WNVEEAEFAF
Sbjct: 380 SYQVFNTVIYACTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAF 439
Query: 74 NQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133
+ MRK G+VCESAYS+MITIYTRL LY+KAEEVI L+++D+V LENWLVMLNAYSQQG
Sbjct: 440 SHMRKFGIVCESAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQG 499
Query: 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYR 193
K+E AE +LVSM AGFSPNI+AYNTL+TGYGK+ MEAAQ LF + ++GLEPDET+YR
Sbjct: 500 KMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYR 559
Query: 194 SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253
SMIEGWGRA NY EAK YY+ELK GYKPN+ NL+TLINL AKY D +GA+ T++DM +
Sbjct: 560 SMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGI 619
Query: 254 GCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM 313
GCQ+SSILG +LQAYEK G+ D VP +LKGS + H+ N TS S LVMAYVKHG++DD +
Sbjct: 620 GCQYSSILGIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCL 679
Query: 314 KVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTY 373
+L +K+W+D+ FE +LYHLLICSCK+SG L +AVKIY+H D + NLHI TMID Y
Sbjct: 680 GLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIY 739
Query: 374 SVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD 433
+VMG F+EAEKLYLNLKSSG+ LD I F++VVRMYVKAGSL++AC+VLE M++QKDI PD
Sbjct: 740 TVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPD 799
Query: 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD 493
YL+ DMLRIYQ+C + DKL +LYY+I KSGI WNQE+Y+CVINCCARALP+DELS F+
Sbjct: 800 VYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFE 859
Query: 494 EMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553
EM+++GFTPN +T NV+LD+YGKAKLFK+V +LF +AK+ G+VDVISYNTIIAAYG+NK+
Sbjct: 860 EMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKD 919
Query: 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613
+MSS ++ MQFDGFSVSLEAYN++LDAYGK+ QME F+++L+RMK+++ DHYTYNI
Sbjct: 920 YTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 979
Query: 614 MIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENG 673
MI+IYGEQGWI+EV VL ELKE GL PDLCSYNTLIKAYGI GMVE+AVGLVKEMR
Sbjct: 980 MINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRN 1039
Query: 674 IEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
I PDK+TYTN++TAL+RND+FLEAIKWSLWMKQ+G+
Sbjct: 1040 IIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMGI 1075
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417671|ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635625|sp|O65567.2|PP342_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g30825, chloroplastic; Flags: Precursor gi|332660415|gb|AEE85815.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/696 (69%), Positives = 594/696 (85%)
Query: 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAF 73
++Q+FNT+IYAC K+G V+L +KWFHMMLE V+PNVAT GMLMGLY+K+WNVEEAEFAF
Sbjct: 209 SYQVFNTVIYACTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAF 268
Query: 74 NQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133
+ MRK G+VCESAYS+MITIYTRL LY+KAEEVI L+++D+V LENWLVMLNAYSQQG
Sbjct: 269 SHMRKFGIVCESAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQG 328
Query: 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYR 193
K+E AE +LVSM AGFSPNI+AYNTL+TGYGK+ MEAAQ LF + ++GLEPDET+YR
Sbjct: 329 KMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYR 388
Query: 194 SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253
SMIEGWGRA NY EAK YY+ELK GYKPN+ NL+TLINL AKY D +GA+ T++DM +
Sbjct: 389 SMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGI 448
Query: 254 GCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM 313
GCQ+SSILG +LQAYEK G+ D VP +LKGS + H+ N TS S LVMAYVKHG++DD +
Sbjct: 449 GCQYSSILGIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCL 508
Query: 314 KVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTY 373
+L +K+W+D+ FE +LYHLLICSCK+SG L +AVKIY+H D + NLHI TMID Y
Sbjct: 509 GLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIY 568
Query: 374 SVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD 433
+VMG F+EAEKLYLNLKSSG+ LD I F++VVRMYVKAGSL++AC+VLE M++QKDI PD
Sbjct: 569 TVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPD 628
Query: 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD 493
YL+ DMLRIYQ+C + DKL +LYY+I KSGI WNQE+Y+CVINCCARALP+DELS F+
Sbjct: 629 VYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFE 688
Query: 494 EMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553
EM+++GFTPN +T NV+LD+YGKAKLFK+V +LF +AK+ G+VDVISYNTIIAAYG+NK+
Sbjct: 689 EMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKD 748
Query: 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613
+MSS ++ MQFDGFSVSLEAYN++LDAYGK+ QME F+++L+RMK+++ DHYTYNI
Sbjct: 749 YTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 808
Query: 614 MIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENG 673
MI+IYGEQGWI+EV VL ELKE GL PDLCSYNTLIKAYGI GMVE+AVGLVKEMR
Sbjct: 809 MINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRN 868
Query: 674 IEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
I PDK+TYTN++TAL+RND+FLEAIKWSLWMKQ+G+
Sbjct: 869 IIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMGI 904
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450749|ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355484699|gb|AES65902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/706 (65%), Positives = 577/706 (81%), Gaps = 8/706 (1%)
Query: 11 AKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAE 70
+L +Q+FNTLIYA +KRG V+L +KWF MML+C+V PNVATFGMLM LY+K+WNVEEAE
Sbjct: 81 PQLTYQIFNTLIYASSKRGLVKLTSKWFRMMLDCNVTPNVATFGMLMRLYQKNWNVEEAE 140
Query: 71 FAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130
F + M++ +VCESAYS+MITIYTRL LY KAE V+ L+ ++ +V N+ENWLV+LN Y
Sbjct: 141 FVMSHMKRFSVVCESAYSSMITIYTRLGLYAKAESVVELMEKEVMVLNVENWLVILNLYC 200
Query: 131 QQGKLEEAELVLVSMRE-AGFS-PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD 188
QQGK+ EAE VL M E AGF NIV YNT++TGYGK SNM+ A+ +FL + +EPD
Sbjct: 201 QQGKMVEAERVLAIMEEEAGFCVENIVVYNTMITGYGKASNMDGAESVFLRLGG-RIEPD 259
Query: 189 ETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLD 248
ET+YRSMIEGWGRAGNY +A+WYY+ELK LG+KP++SNL+T+I L A +D +G V TLD
Sbjct: 260 ETSYRSMIEGWGRAGNYEKARWYYEELKRLGFKPSSSNLFTMIKLQANEDDLDGVVGTLD 319
Query: 249 DMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGL 308
DM+ GC +SSI+GTL+ YE+AG+ +PR+LKGS Y+++L N + CS +VMAYVK+ L
Sbjct: 320 DMVRCGCHYSSIIGTLVSVYERAGKVYELPRLLKGSFYRYILVNQSCCSTVVMAYVKNKL 379
Query: 309 IDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDG---KPNLHI 365
+DDA++VL DK+WKD+ EDNLYHLLICSCK++G L +AV IY+ M + K N HI
Sbjct: 380 VDDALRVLSDKKWKDSRNEDNLYHLLICSCKEAGLLEDAVGIYNQMMKSNADEKKLNKHI 439
Query: 366 MCTMIDTYSVMGMFTEAEKLYLNLK--SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET 423
+CTMID YSVMG F +AE LYL LK SS LD+IA+++VVRMYV+AGSL+DAC+VL+
Sbjct: 440 VCTMIDIYSVMGCFKDAEMLYLKLKKSSSPNSLDMIAYSIVVRMYVRAGSLEDACSVLDD 499
Query: 424 MEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL 483
++K+ DI PD +L DMLRIYQ+ M+DKL+ +YYKILK + W+QE Y+CVINCCARAL
Sbjct: 500 IDKRPDIVPDVFLLRDMLRIYQRRNMVDKLAQVYYKILKDRLNWDQEFYNCVINCCARAL 559
Query: 484 PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNT 543
PIDELSR+FDEMLQ GF PN T NVML+++GKAKLFK+VR+L+ MAKK GLVDVI+YNT
Sbjct: 560 PIDELSRLFDEMLQRGFMPNTFTYNVMLNVFGKAKLFKKVRRLYFMAKKQGLVDVITYNT 619
Query: 544 IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS 603
II +YG+ K+ +MS TV++MQFDGFSVSLEAYNSMLDAYGK+ QM+ F++VL+ MKE++
Sbjct: 620 IIDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESN 679
Query: 604 CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAV 663
C D YTYNI+I+IYGEQGWI EV VL EL ECGLRPDLCSYNTLIKAYGIAGMVE+AV
Sbjct: 680 CASDLYTYNIVINIYGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEAV 739
Query: 664 GLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
L+KEMR+NGIEPD+ TYTN+I AL+RNDKFLEA+KWSLWMKQI L
Sbjct: 740 ELIKEMRKNGIEPDQTTYTNLINALKRNDKFLEAVKWSLWMKQIKL 785
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125563762|gb|EAZ09142.1| hypothetical protein OsI_31412 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/709 (59%), Positives = 538/709 (75%)
Query: 1 MIREVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLY 60
++ E+ G L+ Q FN LIY C KR V+ G KW HMMLE DVQPNV+T GMLMGLY
Sbjct: 249 LLHEMVADSGCALDAQAFNGLIYVCAKRRLVDWGTKWLHMMLERDVQPNVSTVGMLMGLY 308
Query: 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE 120
++ N+ EAEF F +MRK G+ C +AYSAM+T+YTRL + K+EEVI L+ D+VVPN+E
Sbjct: 309 QRIGNLPEAEFTFAKMRKCGIKCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNME 368
Query: 121 NWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180
NWLV LNAY QQGK+EEAELVL S+ + G + N+VAYNT++TGYGKVS+M+ A +F +
Sbjct: 369 NWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRL 428
Query: 181 KDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240
K GL PDETTYRSMIEG+GRA Y++A YY++L++ G+KPNASN YT+INL A+++D
Sbjct: 429 KSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDS 488
Query: 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300
EGA L+DM GCQ SSI+ L++AY GR V +ILK Y+ +LF+ TSCSILV
Sbjct: 489 EGATEILEDMRAAGCQCSSIVTVLVRAYGSVGRMHKVLQILKACFYKKILFDATSCSILV 548
Query: 301 MAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGK 360
+V++ L+++AM+VL +K+WKD+ FEDNLYH+LICSCK++G +AV+IY+ M
Sbjct: 549 TGFVQNSLVEEAMRVLREKKWKDSDFEDNLYHILICSCKEAGCCDDAVRIYNQMPKSATH 608
Query: 361 PNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAV 420
PNL I C+MID +S+M FT+AE LYL LK+S LD+IA++V+VRMY KAG +DAC V
Sbjct: 609 PNLRIYCSMIDVFSIMERFTDAEALYLELKASSCVLDMIAYSVIVRMYTKAGRPEDACLV 668
Query: 421 LETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCA 480
LE MEKQK+I PD YL+ DMLR YQ+CG+L+KLS YY ILKS + ++ +Y+C+INCC
Sbjct: 669 LEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCIINCCG 728
Query: 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS 540
RA+P+DELSR+FDEM+Q G N +TLNV+LDIYGKA LF + K+F MA+K G+ D+IS
Sbjct: 729 RAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLMARKQGMADIIS 788
Query: 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600
YNTIIAA+ +N + SM VQ MQ GF VSLEAYN MLDAYGK GQ+E F VL++M+
Sbjct: 789 YNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKME 848
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVE 660
C FDHYTYNIMI+IYG +GWI V VL ELK G PDL SYNTLIKAYGIAGM E
Sbjct: 849 RAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPE 908
Query: 661 DAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
DAV L++EMR GI D++TYTN+I ALQRN+ FLEA+KWSLWMKQ G+
Sbjct: 909 DAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVKWSLWMKQTGV 957
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 711 | ||||||
| TAIR|locus:505006535 | 904 | AT4G30825 "AT4G30825" [Arabido | 0.978 | 0.769 | 0.696 | 9.1e-274 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.959 | 0.613 | 0.244 | 3e-46 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.900 | 0.781 | 0.204 | 2.6e-45 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.849 | 0.734 | 0.234 | 4.7e-45 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.949 | 0.774 | 0.210 | 4.5e-42 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.701 | 0.703 | 0.246 | 7.7e-40 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.881 | 0.643 | 0.241 | 6.1e-39 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.848 | 0.738 | 0.228 | 8.2e-38 | |
| TAIR|locus:2181286 | 1038 | EMB976 "AT5G27270" [Arabidopsi | 0.924 | 0.632 | 0.221 | 9.6e-38 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.810 | 0.904 | 0.227 | 2.9e-35 |
| TAIR|locus:505006535 AT4G30825 "AT4G30825" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2632 (931.6 bits), Expect = 9.1e-274, P = 9.1e-274
Identities = 485/696 (69%), Positives = 594/696 (85%)
Query: 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAF 73
++Q+FNT+IYAC K+G V+L +KWFHMMLE V+PNVAT GMLMGLY+K+WNVEEAEFAF
Sbjct: 209 SYQVFNTVIYACTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAF 268
Query: 74 NQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133
+ MRK G+VCESAYS+MITIYTRL LY+KAEEVI L+++D+V LENWLVMLNAYSQQG
Sbjct: 269 SHMRKFGIVCESAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQG 328
Query: 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYR 193
K+E AE +LVSM AGFSPNI+AYNTL+TGYGK+ MEAAQ LF + ++GLEPDET+YR
Sbjct: 329 KMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYR 388
Query: 194 SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253
SMIEGWGRA NY EAK YY+ELK GYKPN+ NL+TLINL AKY D +GA+ T++DM +
Sbjct: 389 SMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGI 448
Query: 254 GCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM 313
GCQ+SSILG +LQAYEK G+ D VP +LKGS + H+ N TS S LVMAYVKHG++DD +
Sbjct: 449 GCQYSSILGIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCL 508
Query: 314 KVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTY 373
+L +K+W+D+ FE +LYHLLICSCK+SG L +AVKIY+H D + NLHI TMID Y
Sbjct: 509 GLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIY 568
Query: 374 SVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD 433
+VMG F+EAEKLYLNLKSSG+ LD I F++VVRMYVKAGSL++AC+VLE M++QKDI PD
Sbjct: 569 TVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPD 628
Query: 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD 493
YL+ DMLRIYQ+C + DKL +LYY+I KSGI WNQE+Y+CVINCCARALP+DELS F+
Sbjct: 629 VYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFE 688
Query: 494 EMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553
EM+++GFTPN +T NV+LD+YGKAKLFK+V +LF +AK+ G+VDVISYNTIIAAYG+NK+
Sbjct: 689 EMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKD 748
Query: 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613
+MSS ++ MQFDGFSVSLEAYN++LDAYGK+ QME F+++L+RMK+++ DHYTYNI
Sbjct: 749 YTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 808
Query: 614 MIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENG 673
MI+IYGEQGWI+EV VL ELKE GL PDLCSYNTLIKAYGI GMVE+AVGLVKEMR
Sbjct: 809 MINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRN 868
Query: 674 IEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
I PDK+TYTN++TAL+RND+FLEAIKWSLWMKQ+G+
Sbjct: 869 IIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMGI 904
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 172/704 (24%), Positives = 323/704 (45%)
Query: 4 EVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKS 63
+V G N +NTLI + ++ + F M V+P T+ + + Y KS
Sbjct: 387 DVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKS 446
Query: 64 WNVEEAEFAFNQMRKLGLVCES-AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENW 122
+ A F +M+ G+ A +A + + +A+++ +++ +VP+ +
Sbjct: 447 GDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTY 506
Query: 123 LVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182
+M+ YS+ G+++EA +L M E G P+++ N+L+ K ++ A ++F+ +K+
Sbjct: 507 NMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKE 566
Query: 183 VGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG 242
+ L+P TY +++ G G+ G +EA ++ + G PN TL + K ++
Sbjct: 567 MKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTL 626
Query: 243 AVNTLDDMLNMGCQHSSIL-GTLLQAYEKAGRTDNVPRI---LKGSLYQHVLFNLTSCSI 298
A+ L M++MGC T++ K G+ +K +Y + T C++
Sbjct: 627 ALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFV---TLCTL 683
Query: 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLY-HLLICSCKDSGHLANAVKIYSHM--- 354
L VK LI+DA K++ + + NL+ LI S + NAV +
Sbjct: 684 LP-GVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVAN 742
Query: 355 HIC-DGKPNL-HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAG 412
IC DG L I+ +V G T EK K G++ L + +++ ++A
Sbjct: 743 GICRDGDSILVPIIRYSCKHNNVSGARTLFEKF---TKDLGVQPKLPTYNLLIGGLLEAD 799
Query: 413 SLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELY 472
++ A V ++ I PD Y +L Y + G +D+L LY ++ N +
Sbjct: 800 MIEIAQDVFLQVKSTGCI-PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITH 858
Query: 473 DCVINCCARALPIDE-LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAK 531
+ VI+ +A +D+ L +D M F+P T ++D K+ ++LF
Sbjct: 859 NIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGML 918
Query: 532 KLGL-VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQME 590
G + YN +I +G+ ++ + + M +G L+ Y+ ++D G+++
Sbjct: 919 DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVD 978
Query: 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC-GLRPDLCSYNTL 649
+ + +KE+ D YN++I+ G+ + E + + E+K G+ PDL +YN+L
Sbjct: 979 EGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSL 1038
Query: 650 IKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDK 693
I GIAGMVE+A + E++ G+EP+ T+ +I + K
Sbjct: 1039 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 2.6e-45, P = 2.6e-45
Identities = 134/655 (20%), Positives = 298/655 (45%)
Query: 57 MGLYKK-SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKV 115
+G +KK + ++ Q ++ S + +I++ + A + ++ED
Sbjct: 145 LGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGF 204
Query: 116 VPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN-MEAAQ 174
++ ++ +++A++ G+ EA V M E G P ++ YN ++ +GK+
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKIT 264
Query: 175 RLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLH 234
L +K G+ PD TY ++I R ++EA ++E+K G+ + L++++
Sbjct: 265 SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY 324
Query: 235 AKYEDEEGAVNTLDDMLNMGCQHSSIL-GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNL 293
K + A+ L++M+ G S + +L+ AY + G D + + ++
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384
Query: 294 TSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL--YHLLICSCKDSGHLANAVKIY 351
+ + L+ + + G ++ AM + + R + + N+ ++ I + G +KI+
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMR--NAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 352 SHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA 411
+++C P++ T++ + GM +E ++ +K +G + F ++ Y +
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 412 GSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQEL 471
GS + A V M + PD Y +L + GM ++ + ++ N+
Sbjct: 503 GSFEQAMTVYRRM-LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561
Query: 472 YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAK 531
Y +++ A I + + +E+ P + L ++ + K L + FS K
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELK 621
Query: 532 KLGLV-DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQME 590
+ G D+ + N++++ YG+ + + + + M+ GF+ S+ YNS++ + +
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFG 681
Query: 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLI 650
+ +LR + D +YN +I Y + + + +E++ G+ PD+ +YNT I
Sbjct: 682 KSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFI 741
Query: 651 KAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITA---LQRNDK---FLEAIK 699
+Y M E+A+G+V+ M ++G P++ TY +++ L R D+ F+E ++
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 4.7e-45, P = 4.7e-45
Identities = 144/614 (23%), Positives = 279/614 (45%)
Query: 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF 150
+ I R S Y A +++ I + + ++ + +L+AYS+ GK E+A + M+E G
Sbjct: 182 VRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGP 241
Query: 151 SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV----GLEPDETTYRSMIEGWGRAGNYR 206
SP +V YN ++ +GK M + R L + D GL+ DE T +++ R G R
Sbjct: 242 SPTLVTYNVILDVFGK---MGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLR 298
Query: 207 EAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL-GTLL 265
EAK ++ ELK GY+P L+ + K A++ L +M C S+ L+
Sbjct: 299 EAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV 358
Query: 266 QAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTV 325
AY +AG + +++ + V+ N + + ++ AY K G D+A+K+ + V
Sbjct: 359 AAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV 418
Query: 326 FEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKL 385
Y+ ++ +K+ M PN TM+ GM ++
Sbjct: 419 PNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRV 478
Query: 386 YLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQ 445
+ +KS G D F ++ Y + GS DA + M + Y +L
Sbjct: 479 FREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRA-GFNACVTTYNALLNALA 537
Query: 446 QCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNII 505
+ G + + G + Y ++ C A+ + R+ + + + P+ +
Sbjct: 538 RKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWM 597
Query: 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-DVISYNTIIAAYGQNKNLESMSSTVQEM 564
L +L K + + F++ KK G D++ +N++++ + +N + ++ +
Sbjct: 598 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI 657
Query: 565 QFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWI 624
+ DG S L YNS++D Y + G+ + +L+ ++++ D +YN +I + +G +
Sbjct: 658 REDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLM 717
Query: 625 NEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNM 684
E V +L+E+ E G+RP + +YNT + Y GM + +++ M +N P+++T+ +
Sbjct: 718 QEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMV 777
Query: 685 ITALQRNDKFLEAI 698
+ R K+ EA+
Sbjct: 778 VDGYCRAGKYSEAM 791
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 4.5e-42, P = 4.5e-42
Identities = 143/680 (21%), Positives = 301/680 (44%)
Query: 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLG 80
++ C K + G MM + +P + + L+G + + + F QM++LG
Sbjct: 139 MVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG 198
Query: 81 LV-CESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAE 139
++ +I + + + A ++ ++ + ++ + V ++++ + GK++ A
Sbjct: 199 YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAW 258
Query: 140 LVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199
+ G P+ V Y +++ K + ++ A +F ++ P Y +MI G+
Sbjct: 259 KFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGY 318
Query: 200 GRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSS 259
G AG + EA + + G P+ ++ K + A+ ++M + S
Sbjct: 319 GSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLS 378
Query: 260 ILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF-NLTSCSILVMAYVKHGLIDDAMKVLGD 318
L+ +AG+ D L+ S+ + LF N+ + +I+V K +D+A + +
Sbjct: 379 TYNILIDMLCRAGKLDTAFE-LRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEE 437
Query: 319 KRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGM 378
+K ++ + LI G + +A K+Y M D + N + ++I + G
Sbjct: 438 MDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497
Query: 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYC 438
+ K+Y ++ + DL + KAG + A+ E ++ ++ + PDA Y
Sbjct: 498 KEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV-PDARSYS 556
Query: 439 DMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQH 498
++ + G ++ L+Y + + G + Y+ VI+ + +++ ++ +EM
Sbjct: 557 ILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK 616
Query: 499 GFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESM 557
GF P ++T ++D K LF AK + ++V+ Y+++I +G+ ++
Sbjct: 617 GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676
Query: 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDI 617
++E+ G + +L +NS+LDA K ++ + MKE CT + TY I+I+
Sbjct: 677 YLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILING 736
Query: 618 YGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677
+ N+ E+++ G++P SY T+I AG + +A L + NG PD
Sbjct: 737 LCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796
Query: 678 KITYTNMITALQRNDKFLEA 697
Y MI L ++ ++A
Sbjct: 797 SACYNAMIEGLSNGNRAMDA 816
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 7.7e-40, P = 7.7e-40
Identities = 126/511 (24%), Positives = 241/511 (47%)
Query: 189 ETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLD 248
E Y +I GR+ EA + + + L P N LI A+ D E A+N +
Sbjct: 167 ELLYSILIHALGRSEKLYEA-FLLSQKQTL--TPLTYN--ALIGACARNNDIEKALNLIA 221
Query: 249 DMLNMGCQHSSILGTL-LQAYEKAGRTDNVP--RILKGSLYQHVLFNLTSCSILVMAYVK 305
M G Q + +L +Q+ ++ + D+V R+ K + ++ + ++M + K
Sbjct: 222 KMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAK 281
Query: 306 HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHI 365
G A+++LG + + +I + DSG A ++ + KP
Sbjct: 282 SGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRA 341
Query: 366 MCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETME 425
++ Y G +AE + ++ G+ D +++++ YV AG + A VL+ ME
Sbjct: 342 YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEME 401
Query: 426 KQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS-GITWNQELYDCVINCCARALP 484
D++P+++++ +L ++ G K ++ K +KS G+ +++ Y+ VI+ +
Sbjct: 402 AG-DVQPNSFVFSRLLAGFRDRGEWQK-TFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNC 459
Query: 485 IDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD-VISYNT 543
+D FD ML G P+ +T N ++D + K ++F ++ G + +YN
Sbjct: 460 LDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNI 519
Query: 544 IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS 603
+I +YG + + M + +M+ G ++ + +++D YGK G+ + L MK
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579
Query: 604 CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAV 663
YN +I+ Y ++G + V + GL+P L + N+LI A+G +A
Sbjct: 580 LKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAF 639
Query: 664 GLVKEMRENGIEPDKITYTNMITALQRNDKF 694
+++ M+ENG++PD +TYT ++ AL R DKF
Sbjct: 640 AVLQYMKENGVKPDVVTYTTLMKALIRVDKF 670
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 156/646 (24%), Positives = 288/646 (44%)
Query: 65 NVEEAEFAFNQMRKLGLV-CESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN-- 121
NV+ A M GLV + Y +I ++ E A+ + L+ D + +L+N
Sbjct: 257 NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSL--LVEMDSLGVSLDNHT 314
Query: 122 WLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181
+ ++++ + + A+ ++ M G + Y+ + K ME A+ LF +
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMI 374
Query: 182 DVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEE 241
GL P Y S+IEG+ R N R+ E+K + T++ D +
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434
Query: 242 GAVNTLDDMLNMGCQHSSIL-GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300
GA N + +M+ GC+ + ++ TL++ + + R + R+LK Q + ++ + L+
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494
Query: 301 MAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGK 360
+ K +D+A L + Y I ++ A+A K M C
Sbjct: 495 IGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVL 554
Query: 361 PNLHIMCT-MIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACA 419
PN ++CT +I+ Y G EA Y ++ GI D +TV++ K + DA
Sbjct: 555 PN-KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEE 613
Query: 420 VLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCC 479
+ M + K I PD + Y ++ + + G + K S ++ ++++ G+T N +Y+ ++
Sbjct: 614 IFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672
Query: 480 ARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-DV 538
R+ I++ + DEM G PN +T ++D Y K+ +LF K GLV D
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDS 732
Query: 539 ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRR 598
Y T++ + ++E + T+ G + S +N++++ K G+ E VL R
Sbjct: 733 FVYTTLVDGCCRLNDVER-AITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNR 791
Query: 599 MKETSCTFDHY------TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKA 652
+ + S FD + TYNIMID ++G + + +++ L P + +Y +L+
Sbjct: 792 LMDGS--FDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849
Query: 653 YGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAI 698
Y G + + E GIEPD I Y+ +I A + +A+
Sbjct: 850 YDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895
|
|
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 8.2e-38, P = 8.2e-38
Identities = 141/616 (22%), Positives = 277/616 (44%)
Query: 87 YSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMR 146
Y I +LS K E+ ++ D++ P++ + V+++ + ++ +AE + M
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML 241
Query: 147 EAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYR 206
P+++ YNTL+ GY K N E + ++ +K +EP T+ ++++G +AG
Sbjct: 242 ARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVE 301
Query: 207 EAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL-GTLL 265
+A+ KE+K LG+ P+A L + ++ E E A+ + ++ G + ++ LL
Sbjct: 302 DAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILL 361
Query: 266 QAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHG-LIDDAMKVLGDKRWKDT 324
A K G+ + IL + + ++ N + ++ Y + G L+ MK+ + K
Sbjct: 362 NALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI--EAMEKQG 419
Query: 325 VFEDNL-YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAE 383
+ D+L Y+ LI + G + NA K + M + P++ +I Y F +
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCF 479
Query: 384 KLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRI 443
+ ++ +G +++++ ++ K L +A V ME + + P +Y +ML I
Sbjct: 480 DILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDME-DRGVSPKVRIY-NML-I 536
Query: 444 YQQC--GMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFT 501
C G ++ ++LK GI N Y+ +I+ + + E + E+ + G
Sbjct: 537 DGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLK 596
Query: 502 PNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTV 561
P++ T N ++ YG A +R L+ K+ G+ + ++ + + +E
Sbjct: 597 PDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLF 656
Query: 562 QEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ 621
EM L YN +L Y G ME N+ ++M E S D TYN +I +
Sbjct: 657 GEMSL---KPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKV 713
Query: 622 GWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITY 681
G + EV ++ E+ + P+ +YN ++K + A +EM+E G D
Sbjct: 714 GKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIG 773
Query: 682 TNMITALQRNDKFLEA 697
+++ L+ + EA
Sbjct: 774 NELVSGLKEEWRSKEA 789
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| TAIR|locus:2181286 EMB976 "AT5G27270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 151/681 (22%), Positives = 299/681 (43%)
Query: 37 WFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESA-YSAMITIYT 95
W M+ E V PN T+ +++ Y K EEA AF +M+ LG V E YS++I++
Sbjct: 281 WLEMVEE-GVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSV 339
Query: 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIV 155
+ +EKA + +R +VP+ ML+ Y + +A + M + V
Sbjct: 340 KAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEV 399
Query: 156 AYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215
++ YGK+ AQ +F + + L DE TY +M + +GN +A + +
Sbjct: 400 IRGLIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMM 459
Query: 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTD 275
K + ++ +AK ++ + A + G +S +L Y + +
Sbjct: 460 KTRDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGE 519
Query: 276 NVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLI 335
+K + V F++ + Y K G++ +A ++ K ++ +DN + +
Sbjct: 520 KAKGFIKQIMVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIV-KMGREARVKDNRF---V 575
Query: 336 CSCKDSGHLANAVKIYSHMHICDGKPNLHIMCT--MIDTYSVMGMFTEAEKLYLNLKSSG 393
+ +S H+ N K H + + L +M M++ G E K LNL
Sbjct: 576 QTLAESMHIVN--KHDKHEAVLNVS-QLDVMALGLMLNLRLKEGNLNET-KAILNLM--- 628
Query: 394 IRLDLIAFTV--VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLD 451
+ DL + V V+ +V+ G + A + + + + + + ++ +Y + L
Sbjct: 629 FKTDLGSSAVNRVISSFVREGDVSKAEMIADIIIRL-GLRMEEETIATLIAVYGRQHKLK 687
Query: 452 KLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVML 511
+ LY +S T + + +I+ R +++ +F E + G P +T+++++
Sbjct: 688 EAKRLYLAAGESK-TPGKSVIRSMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILV 746
Query: 512 DIY---GKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDG 568
+ GK + + + + + K + L D + YNT+I A + L+ S + M G
Sbjct: 747 NALTNRGKHREAEHISRT-CLEKNIEL-DTVGYNTLIKAMLEAGKLQCASEIYERMHTSG 804
Query: 569 FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVV 628
S++ YN+M+ YG+ Q++ + + + D Y MI YG+ G ++E +
Sbjct: 805 VPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEAL 864
Query: 629 GVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITAL 688
+ +E+++ G++P SYN ++K + + + L++ M NG D TY +I
Sbjct: 865 SLFSEMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVY 924
Query: 689 QRNDKFLEAIKWSLWMKQIGL 709
+ +F EA K +K+ G+
Sbjct: 925 AESSQFAEAEKTITLVKEKGI 945
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| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 2.9e-35, P = 2.9e-35
Identities = 134/589 (22%), Positives = 255/589 (43%)
Query: 74 NQMRKLGLVCESAYSAM----ITIYTRL--SLYE-KAEEVIRLIREDKVVPNLENWLVML 126
N +L CE +SA ++ RL L + KA++ I L R+ L +
Sbjct: 33 NCPNELSFCCERGFSAFSDRNLSYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFS 92
Query: 127 NAYSQQGKLEEAELVLV---SMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV 183
+S K ++ +LVL M G + N+ + ++ + + + A I +
Sbjct: 93 RLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKL 152
Query: 184 GLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGA 243
G EP+ T+ ++I G G EA + +G+KP+ + TL+N E A
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212
Query: 244 VNTLDDMLNMGCQHSSIL-GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMA 302
+ +D M+ GCQ +++ G +L K+G+T +L+ +++ + SI++
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 303 YVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPN 362
KHG +D+A + + K Y++LI ++G + K+ M PN
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332
Query: 363 LHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLE 422
+ +ID++ G EAE+L+ + GI D I +T ++ + K L A +++
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 392
Query: 423 TMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARA 482
M K +P+ + ++ Y + +D L+ K+ G+ + Y+ +I
Sbjct: 393 LMVS-KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 451
Query: 483 LPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISY 541
++ +F EM+ PNI+T ++LD ++ ++F +K + +D+ Y
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511
Query: 542 NTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE 601
N II ++ + G ++ YN M+ K+G + + + R+M+E
Sbjct: 512 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571
Query: 602 TSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLI 650
D +TYNI+I + G + V ++ ELK CG D + +I
Sbjct: 572 DGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVI 620
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65567 | PP342_ARATH | No assigned EC number | 0.6968 | 0.8734 | 0.6869 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00060060 | hypothetical protein (670 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 711 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 2e-16
Identities = 79/371 (21%), Positives = 165/371 (44%), Gaps = 38/371 (10%)
Query: 330 LYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNL 389
LY LI +C SG + +++ M + N+H +ID + G +A Y +
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 390 KSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ-KDIEPDAYLYCDMLRIYQQCG 448
+S ++ D + F ++ ++G++ A VL M+ + I+PD +++ G
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 449 MLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLN 508
+D+ +Y I + I E+Y +N C++ D ++D+M + G P+ + +
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 509 VMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMSSTVQEMQFD 567
++D+ G A + ++ A+K G+ + +SY++++ A KN +
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK----------- 702
Query: 568 GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEV 627
+LE Y E+ K++ +++ T T N +I E + +
Sbjct: 703 ----ALELY-------------EDIKSI--KLRPTVST-----MNALITALCEGNQLPKA 738
Query: 628 VGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMIT- 686
+ VL+E+K GL P+ +Y+ L+ A + + L+ + +E+GI+P+ + +
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
Query: 687 ALQRNDKFLEA 697
L+R +K
Sbjct: 799 CLRRFEKACAL 809
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-16
Identities = 74/330 (22%), Positives = 138/330 (41%), Gaps = 39/330 (11%)
Query: 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLM------------ 57
G K + +L+ TLI C K G V+ + FH M+ V+ NV TFG L+
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 58 -GLYK--KSWNVEEAEFAFNQM-----------RKLGLVCES------------AYSAMI 91
G Y +S NV+ FN + R ++ E A++
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586
Query: 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFS 151
++A+EV ++I E + E + + +N+ SQ+G + A + M++ G
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
Query: 152 PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWY 211
P+ V ++ L+ G +++ A + + G++ +Y S++ A N+++A
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
Query: 212 YKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG-CQHSSILGTLLQAYEK 270
Y+++K + +P S + LI + A+ L +M +G C ++ LL A E+
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 271 AGRTDNVPRILKGSLYQHVLFNLTSCSILV 300
D +L + + NL C +
Sbjct: 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
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Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 8e-16
Identities = 95/467 (20%), Positives = 184/467 (39%), Gaps = 57/467 (12%)
Query: 138 AELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIE 197
+ V + +GF P+ N ++ + K + A+RLF D E + ++ ++I
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF----DEMPERNLASWGTIIG 197
Query: 198 GWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257
G AGNYREA ++E+ G ++ A L H
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR----------ASAGLGSARAGQQLH 247
Query: 258 SSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLG 317
+L K G + SC+++ M Y K G I+DA V
Sbjct: 248 CCVL--------KTGVVGDT---------------FVSCALIDM-YSKCGDIEDARCVFD 283
Query: 318 DKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLH--IMCTMIDTYSV 375
K TV +++ + G+ A+ +Y M D ++ MI +S
Sbjct: 284 GMPEKTTVAWNSM----LAGYALHGYSEEALCLYYEM--RDSGVSIDQFTFSIMIRIFSR 337
Query: 376 MGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAY 435
+ + A++ + L +G LD++A T +V +Y K G ++DA V + M ++ I +A
Sbjct: 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA- 396
Query: 436 LYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEM 495
++ Y G K ++ +++ G+ N + V++ C + ++ +F M
Sbjct: 397 ----LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
Query: 496 LQ-HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS-YNTIIAAYGQNKN 553
+ H P + M+++ G+ L ++M ++ ++ + ++ A +KN
Sbjct: 453 SENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKN 509
Query: 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600
LE + E + L Y +L+ Y G+ V+ +K
Sbjct: 510 LE-LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 94/448 (20%), Positives = 184/448 (41%), Gaps = 74/448 (16%)
Query: 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLAN-----AVKIYSH 353
L+ YVK G + A V +D + ++ +I SG+ N ++++
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCIS----WNAMI-----SGYFENGECLEGLELFFT 278
Query: 354 MHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGS 413
M P+L + ++I ++G +++ + +G +D+ +++MY+ GS
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 414 LKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYD 473
+A V ME + DA + M+ Y++ G+ DK Y + + ++ ++
Sbjct: 339 WGEAEKVFSRMETK-----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393
Query: 474 CVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLF-SMAKK 532
V++ CA +D ++ + + G ++ N ++++Y K K + ++F ++ +K
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
Query: 533 LGLVDVISYNTIIAAYG-QNKNLES------MSSTVQE---------------------- 563
DVIS+ +IIA N+ E+ M T++
Sbjct: 454 ----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509
Query: 564 ----------MQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613
+ FDGF N++LD Y + G+M N S D ++NI
Sbjct: 510 EIHAHVLRTGIGFDGF-----LPNALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNI 559
Query: 614 MIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMREN- 672
++ Y G + V + + E G+ PD ++ +L+ A +GMV + M E
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619
Query: 673 GIEPDKITYTNMITALQRNDKFLEAIKW 700
I P+ Y ++ L R K EA +
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNF 647
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 4e-14
Identities = 77/364 (21%), Positives = 143/364 (39%), Gaps = 60/364 (16%)
Query: 366 MCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETME 425
+C+ I+ G EA +L+ L++ FT+ Y +L +AC L+++
Sbjct: 90 LCSQIEKLVACGRHREALELFEILEAGC------PFTLPASTY---DALVEACIALKSIR 140
Query: 426 KQKDI---------EPDAYLYCDMLRIYQQCGMLDKLSYLYYKI-LKSGITWNQELYDCV 475
K + EPD Y+ +L ++ +CGML L+ ++ ++ +W +
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGT-----I 195
Query: 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVML-------DIYGKAKLFKRVRK--- 525
I A E +F EM + G T VML +L V K
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 526 ---------LFSMAKKLGLVD-------------VISYNTIIAAYGQNKNLESMSSTVQE 563
L M K G ++ +++N+++A Y + E E
Sbjct: 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315
Query: 564 MQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGW 623
M+ G S+ ++ M+ + + +E+ K + T D ++D+Y + G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 624 INEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTN 683
+ + V + R +L S+N LI YG G AV + + M G+ P+ +T+
Sbjct: 376 MEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 684 MITA 687
+++A
Sbjct: 432 VLSA 435
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 46/289 (15%)
Query: 463 SGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKR 522
+G+ + +LY +I+ CA++ +D + VF EM+ G N+ T ++D +A +
Sbjct: 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG---Q 522
Query: 523 VRKLFS----MAKKLGLVDVISYNTIIAAYGQNKN-------LESMSSTVQEMQFDGFSV 571
V K F M K D + +N +I+A GQ+ L M + + D +V
Sbjct: 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 572 ---------------SLEAYNSMLDAYGKEGQMENFKNVLRR----------------MK 600
+ E Y M+ Y +G E + + MK
Sbjct: 583 GALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVE 660
+ D ++ ++D+ G G +++ +L + ++ G++ SY++L+ A A +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 661 DAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709
A+ L ++++ + P T +ITAL ++ +A++ MK++GL
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-13
Identities = 71/354 (20%), Positives = 139/354 (39%), Gaps = 17/354 (4%)
Query: 335 ICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGI 394
+CS G L A+K+ M + + E ++ SS
Sbjct: 61 LCS---HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117
Query: 395 RLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLS 454
L + ++ M+V+ G L A V M E D + + ++ Y + G D+
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 455 YLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIY 514
LY+++L +G+ + + CV+ C + V +++ GF ++ +N ++ +Y
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 515 GKAKLFKRVRKLF-SMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSL 573
K R +F M ++ D IS+N +I+ Y +N M+ L
Sbjct: 233 VKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 574 EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTE 633
S++ A G + + + +T D N +I +Y G E V +
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 634 LKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITA 687
++ D S+ +I Y G+ + A+ M ++ + PD+IT ++++A
Sbjct: 349 ME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 8e-13
Identities = 87/421 (20%), Positives = 184/421 (43%), Gaps = 34/421 (8%)
Query: 298 ILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL--YHLLICSCKDSGHLANAVKIYSHMH 355
+L+M +VK G++ DA ++ D + E NL + +I D+G+ A ++ M
Sbjct: 164 VLLM-HVKCGMLIDARRLF------DEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 356 ICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLK 415
M+ + +G ++L+ + +G+ D ++ MY K G ++
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 416 DACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCV 475
DA V + M ++ + + ML Y G ++ LYY++ SG++ +Q + +
Sbjct: 277 DARCVFDGMPEKTTVA-----WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL 535
I +R ++ + +++ GF +I+ ++D+Y K + R +F ++
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF---DRMPR 388
Query: 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNV 595
++IS+N +IA YG + + M +G + + + ++L A G E +
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 596 LRRMKETSCTFDHYT------YNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTL 649
+ M E +H Y MI++ G +G ++E + ++ +P + + L
Sbjct: 449 FQSMSE-----NHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAAL 500
Query: 650 IKAYGIAGMVEDAVGLVKEMRENGIEPDKI-TYTNMITALQRNDKFLEAIKWSLWMKQIG 708
+ A I +E +G + + G+ P+K+ Y ++ + + EA K +K+ G
Sbjct: 501 LTACRIHKNLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558
Query: 709 L 709
L
Sbjct: 559 L 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 8e-13
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 641 PDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITAL 688
PD+ +YNTLI Y G VE+A+ L EM++ GI+P+ TY+ +I L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 81/382 (21%), Positives = 160/382 (41%), Gaps = 18/382 (4%)
Query: 108 RLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167
+LIR P L + ++++ + ++ A VL ++EAG + Y TL++ K
Sbjct: 430 KLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485
Query: 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNL 227
++A +F + + G+E + T+ ++I+G RAG +A Y ++ KP+
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545
Query: 228 YTLINLHAKYEDEEGAVNTLDDML-NMGCQHSSIL------GTLLQAYEKAGRTDNVPRI 280
LI+ + GAV+ D+L M + I G L++A AG+ D +
Sbjct: 546 NALISACG----QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 281 LKGSLYQHVLFNLTSC-SILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCK 339
+ ++++ + +I V + + G D A+ + D + K ++ + L+
Sbjct: 602 YQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 340 DSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI 399
+G L A +I K +++ S + +A +LY ++KS +R +
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720
Query: 400 AFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYK 459
++ + L A VL M K+ + P+ Y +L ++ D L +
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
Query: 460 ILKSGITWNQELYDCVINCCAR 481
+ GI N + C+ C R
Sbjct: 780 AKEDGIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 82/373 (21%), Positives = 163/373 (43%), Gaps = 21/373 (5%)
Query: 331 YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLK 390
Y L+ +C + +Y H+ +P+ ++M ++ + GM +A +L+ +
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 391 SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETM-EKQKDIEPDAYLYCDMLRIYQQCGM 449
+L ++ ++ V AG+ ++A A+ M E D EP ++ MLR G
Sbjct: 186 ER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV--MLRASAGLGS 239
Query: 450 LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNV 509
L+ +LK+G+ + + +I+ ++ I++ VFD M + + N
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNS 295
Query: 510 MLDIY---GKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQF 566
ML Y G ++ + + + M +D +++ +I + + LE +
Sbjct: 296 MLAGYALHGYSE--EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 567 DGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINE 626
GF + + A +++D Y K G+ME+ +NV RM + ++N +I YG G +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTK 409
Query: 627 VVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMREN-GIEPDKITYTNMI 685
V + + G+ P+ ++ ++ A +G+ E + + M EN I+P + Y MI
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 686 TALQRNDKFLEAI 698
L R EA
Sbjct: 470 ELLGREGLLDEAY 482
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 100/422 (23%), Positives = 163/422 (38%), Gaps = 84/422 (19%)
Query: 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATF-------GML-------------- 56
+N +I + G G + F M E V P++ T +L
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315
Query: 57 ----------------MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100
M L SW EAE F++M V +++AMI+ Y + L
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWG--EAEKVFSRMETKDAV---SWTAMISGYEKNGLP 370
Query: 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL 160
+KA E L+ +D V P+ +L+A + G L+ + G +V N L
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 161 MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYR--EAKWYYKELKHL 218
+ Y K ++ A +F +I E D ++ S+I G N R EA +++++ L
Sbjct: 431 IEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGL--RLNNRCFEALIFFRQML-L 483
Query: 219 GYKPNASNLYTLINLHAKYEDEEGAVNTLDDM----LNMGCQHSSIL-GTLLQAYEKAGR 273
KPN+ L ++ A+ GA+ ++ L G L LL Y + GR
Sbjct: 484 TLKPNSVTLIAALSACARI----GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 274 TDNVPRILKGSLYQHVLFNL-----TSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFED 328
+ Y FN S +IL+ YV HG A++ L ++ + V D
Sbjct: 540 MN----------YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE-LFNRMVESGVNPD 588
Query: 329 NLYHL-LICSCKDSGHLANAVKIYSHM----HICDGKPNLHIMCTMIDTYSVMGMFTEAE 383
+ + L+C+C SG + ++ + M I PNL ++D G TEA
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLTEAY 645
Query: 384 KL 385
Sbjct: 646 NF 647
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 7e-11
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 152 PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEG 198
P++V YNTL+ GY K +E A +LF +K G++P+ TY +I+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-10
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 9/222 (4%)
Query: 470 ELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLF-S 528
YD ++ C I + V+ + GF P+ +N +L ++ K + R+LF
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 529 MAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQ 588
M ++ ++ S+ TII N + +EM DG + ML A G
Sbjct: 184 MPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 589 MENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNT 648
+ + + +T D + +ID+Y + G I + V + ++N+
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF----DGMPEKTTVAWNS 295
Query: 649 LIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQR 690
++ Y + G E+A+ L EMR++G+ D+ T++ MI R
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 87/419 (20%), Positives = 163/419 (38%), Gaps = 89/419 (21%)
Query: 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCES-AYSAMITIYTRLSLYEKAEEVI 107
N+A++G ++G + N EA F +M + G E + M+ L +++
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 108 RLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167
+ + VV + +++ YS+ G +E+A V M E VA+N+++ GY
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALH 303
Query: 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNL 227
E A L+ ++D G+ D+ T+ MI + R AK + L G+ +
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 228 YTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILG--TLLQAYEKAGRTDNVPR-----I 280
L++L++K+ E A N D M +++ L+ Y GR I
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRM-----PRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 281 LKGSLYQHVLF--NLTSCS-----------ILVMAYV------------------KHGLI 309
+G HV F L++C M+ + GL+
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478
Query: 310 DDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTM 369
D+A ++ +K TV N++ L A +I+ ++
Sbjct: 479 DEAYAMIRRAPFKPTV---NMW----------AALLTACRIHKNLE-------------- 511
Query: 370 IDTYSVMGMFTEAEKLYLNLKSSGIRLDLIA-FTVVVRMYVKAGSLKDACAVLETMEKQ 427
+G AEKLY G+ + + + V++ +Y +G +A V+ET++++
Sbjct: 512 ------LGRLA-AEKLY------GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 575 AYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMID 616
YN+++D Y K+G++E + MK+ + YTY+I+ID
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 117 PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166
P++ + +++ Y ++GK+EEA + M++ G PN+ Y+ L+ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAY 653
D TYN +ID Y ++G + E + + E+K+ G++P++ +Y+ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 638 GLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMR 670
GL+PD+ +YNTLI AG V++AV L+ EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-07
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 644 CSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677
+YNTLI AG VE+A+ L KEM+E GIEPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 82/404 (20%), Positives = 150/404 (37%), Gaps = 96/404 (23%)
Query: 342 GHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAF 401
G L +A ++ M + +L ++ Y+ G F EA LY + +G+R D+ F
Sbjct: 135 GELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 402 TVVVR-----------------------------------MYVKAGSLKDACAVLETMEK 426
V+R MYVK G + A V + M +
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250
Query: 427 QKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPID 486
+ I +A M+ Y + G + L++ + + + + VI+ C L +
Sbjct: 251 RDCISWNA-----MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE-LLGDE 304
Query: 487 ELSR-VFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTII 545
L R + +++ GF ++ N ++ +Y + K+FS ++ D +S+ +I
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS---RMETKDAVSWTAMI 361
Query: 546 AAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCT 605
+ Y +N + T M+ D S S+L A G ++
Sbjct: 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD--------------- 406
Query: 606 FDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSY----NTLIKAYGIAGMVED 661
VGV +L E R L SY N LI+ Y ++
Sbjct: 407 ----------------------VGV--KLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 662 AVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMK 705
A+ + + E D I++T++I L+ N++ EA+ + M
Sbjct: 443 ALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML 482
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 100/525 (19%), Positives = 210/525 (40%), Gaps = 66/525 (12%)
Query: 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATF-------GMLMGLYK-KSWNVEEA 69
+N L+ K G + +H ML V+P+V TF G + L + + +
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 70 EFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVI-RLIREDKVVPNLENWLVMLNA 128
F F + +V +A+IT+Y + A V R+ R D + +W M++
Sbjct: 215 RFGFEL--DVDVV-----NALITMYVKCGDVVSARLVFDRMPRRDCI-----SWNAMISG 262
Query: 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD 188
Y + G+ E + +MRE P+++ ++++ + + + + + G D
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 189 ETTYRSMIEGWGRAGNYREAKWYYK--ELKHL--------GYKPN-----ASNLYTLINL 233
+ S+I+ + G++ EA+ + E K GY+ N A Y L+
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 234 HAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNL 293
DE + L C L ++ +E A R + + +
Sbjct: 383 DNVSPDEITIASVLS-----ACACLGDLDVGVKLHELAERK------------GLISYVV 425
Query: 294 TSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSH 353
+ +++ M Y K ID A++V + KD + + +I + + A+ +
Sbjct: 426 VANALIEM-YSKCKCIDKALEVFHNIPEKDVIS----WTSIIAGLRLNNRCFEALIFFRQ 480
Query: 354 MHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGS 413
M + KPN + + + +G ++++ ++ +GI D ++ +YV+ G
Sbjct: 481 M-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 414 LKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYD 473
+ A + EK D + +L Y G L+ ++++SG+ ++ +
Sbjct: 540 MNYAWNQFNSHEK------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 474 CVINCCARALPIDELSRVFDEM-LQHGFTPNIITLNVMLDIYGKA 517
++ C+R+ + + F M ++ TPN+ ++D+ G+A
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 645 SYNTLIKAYGIAGMVEDAVGLVKEMRENGI 674
+YN+LI Y AG +E+A+ L KEM+E G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 502 PNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-DVISYNTIIAAY 548
P+++T N ++D Y K + KLF+ KK G+ +V +Y+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 20/238 (8%)
Query: 19 NTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQM-- 76
N LI +K C++ + FH + E DV ++ ++ GL + E A F QM
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDV---ISWTSIIAGLRLNNRCFE-ALIFFRQMLL 483
Query: 77 --RKLGLVCESAYSAMITIYTRLSLYEKAEEVIRL-IREDKVVPNLENWLVMLNAYSQQG 133
+ + +A SA I + E V+R I D +PN +L+ Y + G
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCG 538
Query: 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYR 193
++ A S + ++V++N L+TGY A LF + + G+ PDE T+
Sbjct: 539 RMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 194 SMIEGWGRAGNYREAKWYYKELKH-LGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250
S++ R+G + Y+ ++ PN + +++L + A N ++ M
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 537 DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK 585
DV++YNT+I Y + +E EM+ G ++ Y+ ++D K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 465 ITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLD 512
+T+N +I+ + ++E ++F+EM + G PN+ T ++++D
Sbjct: 4 VTYN-----TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 645 SYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676
+YN L+ A AG + A+ +++EM+ +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 8e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 609 YTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD 642
TYN +ID + G + E + + E+KE G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 26/116 (22%), Positives = 52/116 (44%)
Query: 572 SLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVL 631
+L +N ++ ++ VLR ++E D Y +I + G ++ + V
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 632 TELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITA 687
E+ G+ ++ ++ LI AG V A G MR ++PD++ + +I+A
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 361 PNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK 410
P++ T+ID Y G EA KL+ +K GI+ ++ +++++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 122 WLVMLNAYSQQGKLEEAELVLVSMREAGFSPNI 154
+ +++ + G++EEA + M+E G P++
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLM-GLYK 61
+NTLI K+G VE K F+ M + ++PNV T+ +L+ GL K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 397 DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLR 442
D++ + ++ Y K G +++A + M K++ I+P+ Y Y ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 711 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.93 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.46 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.29 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.07 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.86 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.81 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.78 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.72 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.42 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.08 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.02 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.99 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.95 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.94 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.89 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.88 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.75 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.71 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.68 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.68 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.62 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.42 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.3 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.27 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.24 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.19 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.09 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.98 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.98 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.89 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.78 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.78 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.77 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.65 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.53 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.43 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.42 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.34 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.26 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.25 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.22 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.11 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.08 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.02 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.96 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.92 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.88 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.82 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.66 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.64 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.4 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.31 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.3 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.26 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.23 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.09 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.05 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.59 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.31 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.29 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.01 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.96 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.94 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.83 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.83 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.58 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.35 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.98 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.94 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.82 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.8 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.54 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.43 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.39 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.21 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.13 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.96 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.62 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.53 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 91.43 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.24 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.07 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.05 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.73 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.34 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.12 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 88.98 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.71 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.69 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.54 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.32 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.93 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.46 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.0 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.45 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.4 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.03 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.63 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.59 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.55 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.14 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.05 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.03 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.94 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 84.69 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 84.58 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.48 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.48 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.3 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.28 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.25 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.07 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.93 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 83.91 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.36 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.98 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.72 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.54 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.45 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.13 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.25 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.07 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.06 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.8 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.59 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-84 Score=697.04 Aligned_cols=675 Identities=17% Similarity=0.228 Sum_probs=647.0
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-hhHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-ESAYS 88 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 88 (711)
...|+..+++.++++|++.|++++|..+|+.|.+.|++|+..+|..++..|.+.+.++.|..++..+.+.++.. ...++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999888754 56889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS 168 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (711)
.++..|++.|+.+.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 999999999999999999999975 6888999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHH
Q 005161 169 NMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLD 248 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (711)
++..+.+++..+.+.|+.||..+|+++|.+|++.|+++.|..+|++|. .||..+|+.++.+|.+.|+.++|..+|.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 4688999999999999999999999999
Q ss_pred HHHHCCCCCh-hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCcc
Q 005161 249 DMLNMGCQHS-SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFE 327 (711)
Q Consensus 249 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 327 (711)
+|.+.|..|+ .+++.++.++.+.|+.+.+.+++..+...+..||..+|+.++.+|++.|++++|.++|++|.. |+
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC
Confidence 9999999888 889999999999999999999999999999999999999999999999999999999999975 46
Q ss_pred HhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 328 DNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRM 407 (711)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (711)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHH
Q 005161 408 YVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDE 487 (711)
Q Consensus 408 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 487 (711)
|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.
T Consensus 434 y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 999999999999999994 46889999999999999999999999999986 589999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005161 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD 567 (711)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 567 (711)
+.+++..+.+.|+.++..+++.++.+|+++|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999987 579999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 005161 568 GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK-ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSY 646 (711)
Q Consensus 568 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 646 (711)
|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~ 660 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVW 660 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHH
Confidence 999999999999999999999999999999999 67999999999999999999999999999999983 78999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
++|+.+|...|+.+.+....+++.+ +.|+ ...|..+.+.|...|+|++|.++.+.|+++|++.
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999988 7885 5778888999999999999999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-81 Score=676.52 Aligned_cols=650 Identities=17% Similarity=0.246 Sum_probs=623.5
Q ss_pred ChHHhHhhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 005161 1 MIREVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLG 80 (711)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 80 (711)
+|++|. ..|++|+..+|..++++|.+.+.+..|.+++..+++.+..++...++.++..|++.|+++.|.++|+.|.+.+
T Consensus 73 l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d 151 (857)
T PLN03077 73 LLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151 (857)
T ss_pred HHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCC
Confidence 367887 7899999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005161 81 LVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL 160 (711)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (711)
..+|+.++.+|++.|++++|+++|++|...|+.||..||+.++.+|++.++++.+.+++..+.+.|+.|+..++|.|
T Consensus 152 ---~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 152 ---LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred ---eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (711)
+.+|++.|+++.|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 9999999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCh-hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 241 EGAVNTLDDMLNMGCQHS-SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
+.+.+++..+.+.|..++ .+++.++..|++.|++++|.++|+.+. .||..+|+.++.+|.+.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999888 899999999999999999999999985 358889999999999999999999999999
Q ss_pred hhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 005161 320 RWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI 399 (711)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 399 (711)
...++.|+..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|+.|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 5888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 400 AFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCC 479 (711)
Q Consensus 400 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (711)
+|+.++.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.++..+++.+++.|
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 999999999999999999999999964 589999999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHhcCCHHHHH
Q 005161 480 ARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMS 558 (711)
Q Consensus 480 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 558 (711)
++.|++++|..+|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.+. ||..+|+.++.+|.+.|.+++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 9999999999999887 67999999999999999999999999999999887 89999999999999999999999
Q ss_pred HHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 559 STVQEMQ-FDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 559 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~- 685 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE- 685 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Confidence 9999999 67999999999999999999999999999999985 789999999999999999999999999999987
Q ss_pred CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 638 GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 638 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+.|+ ...|..+.+.|...|+|++|.++.+.|.+.|+.+++
T Consensus 686 -l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 686 -LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred -hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 5676 677888889999999999999999999999998865
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=562.96 Aligned_cols=549 Identities=17% Similarity=0.229 Sum_probs=501.0
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 46 VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWL 123 (711)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (711)
..++...|..++..|++.|++++|.++|+.|.+.+..+ ...+..++..|.+.|..++|+.+++.|.. |+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 35778889999999999999999999999999988754 44567788999999999999999998865 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.|+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 005161 204 NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKG 283 (711)
Q Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 283 (711)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|...+
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~----------------------------- 572 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET----------------------------- 572 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-----------------------------
Confidence 999999999999999999999999999999999999999999999987631
Q ss_pred hhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcH
Q 005161 284 SLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNL 363 (711)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (711)
.+..||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 573 ---~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 573 ---HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred ---CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 12457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 005161 364 HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRI 443 (711)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (711)
.+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|+.| ...++.||..+|+.++.+
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM-~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 457899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHH
Q 005161 444 YQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRV 523 (711)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 523 (711)
|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.++|.+|.+.|+.||..+|+.++..|. +.++++
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka 806 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKA 806 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654 246666
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 524 RKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS 603 (711)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (711)
..+.+.+...+.. ......+..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.+...+
T Consensus 807 ~~l~~~v~~f~~g---------~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 807 CALGEPVVSFDSG---------RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred hhhhhhhhhhhcc---------ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6655433322110 1111223346799999999999999999999999988888899999999999998888
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChH
Q 005161 604 CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLC 644 (711)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 644 (711)
..|+..+|+.+++++.+. .++|..+|++|.+.|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999999998532 468999999999999999864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=555.66 Aligned_cols=542 Identities=15% Similarity=0.248 Sum_probs=335.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 117 PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 117 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
++...|..++..+++.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4555666677777777777777777777777664 45666666777777777777777777777764 777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCC
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTD 275 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (711)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-------------------- 503 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-------------------- 503 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--------------------
Confidence 777777777777777777777777777777777777777777777777777776666553
Q ss_pred cHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHh
Q 005161 276 NVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMH 355 (711)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 355 (711)
.||..+|+.+|.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 504 --------------~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 504 --------------EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred --------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346666666666666666666666666666666666666666666666666666666666666665
Q ss_pred h--cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 005161 356 I--CDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD 433 (711)
Q Consensus 356 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 433 (711)
. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++| ...|+.||
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv~PD 648 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPD 648 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCC
Confidence 4 45566666666666666666666666666666666666666666666666666666666666666666 34556666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 005161 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDI 513 (711)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (711)
..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.|+.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhccCcHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENF 592 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 592 (711)
|++.|++++|.++|+.|...+. |+..+|+.++.+|++.|++++|.+++.+|.+.|+.|+..+|++++..|.+ ++++|
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka 806 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKA 806 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHH
Confidence 6666666666666666665555 56666666666666666666666666666666666666666666654331 23333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHc
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMREN 672 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 672 (711)
..+.+.+... + ........+..+.|..+|++|++.|+.||..+|+.++.+++..+..+.+..+++.|...
T Consensus 807 ~~l~~~v~~f---------~-~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 807 CALGEPVVSF---------D-SGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred hhhhhhhhhh---------h-ccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 3332222210 0 00001111223345555555555555555555555554444445555555555444444
Q ss_pred CCCCCcchHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 673 GIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 673 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+..|+..+|+.++.++.+. .++|..++++|.+.|+.|
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 4444455555555544221 234555555555555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-61 Score=506.16 Aligned_cols=511 Identities=18% Similarity=0.255 Sum_probs=462.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDK-VVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMT 162 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (711)
...|+.++..|.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.|+.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3579999999999999999999999998764 678999999999999999999999999999999999999999999999
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG 242 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (711)
+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|...|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999985 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 005161 243 AVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK 322 (711)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 322 (711)
+.+++..+.+.|. .+|..+++.|+.+|++.|++++|.++|++|...
T Consensus 243 ~~~l~~~~~~~g~----------------------------------~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 243 GQQLHCCVLKTGV----------------------------------VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred HHHHHHHHHHhCC----------------------------------CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 9998888877664 458889999999999999999999999999754
Q ss_pred CCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 323 DTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFT 402 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 402 (711)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|+.||..+++
T Consensus 289 ----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 289 ----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred ----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 5669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 005161 403 VVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARA 482 (711)
Q Consensus 403 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (711)
+++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999994 4799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 483 LPIDELSRVFDEMLQ-HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTV 561 (711)
Q Consensus 483 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 561 (711)
|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++.+. ..|+..+|++++.+|...|+++.|..++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999986 6999999999999999999999999999987652 2378899999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHh----hc----CCHHHHHH
Q 005161 562 QEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY-TYNIMI---DIYG----EQ----GWINEVVG 629 (711)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~---~~~~----~~----g~~~~A~~ 629 (711)
+++.+.+ +.+..+|..++..|++.|++++|.++++.|.+.|+...+. +|..+. ..+. .. .-++...+
T Consensus 518 ~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 518 EKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 9987653 4457899999999999999999999999999988764332 232111 0000 00 11345667
Q ss_pred HHHHHHHCCCCCChH
Q 005161 630 VLTELKECGLRPDLC 644 (711)
Q Consensus 630 ~~~~~~~~~~~p~~~ 644 (711)
+..+|.+.|..|+..
T Consensus 597 l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 597 LMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCCCCcc
Confidence 778888899999853
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-61 Score=506.36 Aligned_cols=473 Identities=19% Similarity=0.279 Sum_probs=415.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHH
Q 005161 187 PDETTYRSMIEGWGRAGNYREAKWYYKELKHLG-YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLL 265 (711)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 265 (711)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..+.+.|.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---------- 154 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---------- 154 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------
Confidence 455567777777777777777777777776543 567777777777777777777776666666665543
Q ss_pred HHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChh
Q 005161 266 QAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLA 345 (711)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (711)
.||..+++.++..|++.|++++|.++|++|.. |+..+|+.++.+|++.|+++
T Consensus 155 ------------------------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 155 ------------------------EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred ------------------------CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHH
Confidence 34677777888888888888888888888864 56668888888888888888
Q ss_pred hHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005161 346 NAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETME 425 (711)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 425 (711)
+|.++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH
Q 005161 426 KQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNII 505 (711)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 505 (711)
.+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..
T Consensus 287 -----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 287 -----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred -----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK 585 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 585 (711)
+++.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999998864 58889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHH
Q 005161 586 EGQMENFKNVLRRMKE-TSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVG 664 (711)
Q Consensus 586 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 664 (711)
.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999976 589999999999999999999999999998876 578999999999999999999999999
Q ss_pred HHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhCcC
Q 005161 665 LVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIGLQ 710 (711)
Q Consensus 665 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 710 (711)
+++++.+ +.|+ ..+|..+++.|.+.|++++|.+++++|+++|++
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999875 7785 579999999999999999999999999999985
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=392.67 Aligned_cols=675 Identities=15% Similarity=0.070 Sum_probs=370.6
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|.++++.+++.. +++...+..+..++...|++++|...|+.+.+.+|.+..++..++..+
T Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 159 LYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3344444455555555555555555554432 334444444445555555555555555555555554444455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC--------------------------------C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVV--------------------------------P-NLENWLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~--------------------------------~-~~~~~~~l~~~~~~~~~~~~a~~~ 141 (711)
...|++++|...++.+.+..+. | +...+..+...+...|++++|...
T Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 238 IEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555444444433221 1 112222333344455555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK 221 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 221 (711)
++.+.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...+..+...+.+.|++++|..+|+++.+...
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 394 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP- 394 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 55555442 23444555555566666666666666666655432 3455566666666666666666666666655421
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHH
Q 005161 222 PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVM 301 (711)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 301 (711)
.+...+..+...+...|++++|...++.+.+..+........++..+.+.|++++|..+++.+....+. +...+..+..
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 473 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGA 473 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHH
Confidence 234445555556666666666666666666655554444555555666666666666666665554433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHH
Q 005161 302 AYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTE 381 (711)
Q Consensus 302 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (711)
.+...|++++|...|+++...++. +...+..+...+...|++++|...++.+.... +.+..++..+...+...|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666554432 23345555566666666666666666665543 3345556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005161 382 AEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKIL 461 (711)
Q Consensus 382 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (711)
|...++.+...+ +.+...+..+...+.+.|++++|..+++.+.... +.+...|..+..++...|++++|...|+.+.
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665543 2344555556666666666666666666664322 3445566666666666666666666666665
Q ss_pred hcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHH
Q 005161 462 KSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISY 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 541 (711)
+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+.+..+.+...+
T Consensus 629 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 706 (899)
T TIGR02917 629 ALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706 (899)
T ss_pred HhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH
Confidence 543 2244455566666666666666666666666542 33455555566666666666666666666666655555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 005161 542 NTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ 621 (711)
Q Consensus 542 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (711)
..+...+...|++++|...++.+...+ |+..++..+..++.+.|++++|.+.++++.+. .+.+...+..+...|...
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHC
Confidence 666666666666666666666655542 33344445555555555555555555555543 233444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHH
Q 005161 622 GWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKW 700 (711)
Q Consensus 622 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~ 700 (711)
|++++|...|+++.+.. ++++.+++.++..+...|+ .+|+..++++.+ ..|+ ..++..+..++...|++++|.++
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555531 2234445555555544444 444444444444 2332 23334444444444555555555
Q ss_pred HHHHHHhC
Q 005161 701 SLWMKQIG 708 (711)
Q Consensus 701 ~~~m~~~g 708 (711)
++++.+.+
T Consensus 860 ~~~a~~~~ 867 (899)
T TIGR02917 860 LRKAVNIA 867 (899)
T ss_pred HHHHHhhC
Confidence 54444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=389.78 Aligned_cols=672 Identities=13% Similarity=0.036 Sum_probs=561.3
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCH--------------------------
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNV-------------------------- 66 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------------------- 66 (711)
.+...+..+...+...|++++|...|+.+++.+ +.+..++..++.++...|++
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 344555555555556666666666666665543 33444444444455444544
Q ss_pred --------HHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 67 --------EEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 67 --------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
++|...|+.+.+.++....++..+...+...|++++|...++.+.+..+. +...+..+...+.+.|++++|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHH
Confidence 45555555554444444444555666777888888888888888776543 566777888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 139 ELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
...++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|...|+++.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 99999998875 45778899999999999999999999999987653 45667888889999999999999999999886
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHH
Q 005161 219 GYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSI 298 (711)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 298 (711)
... .......++..+...|++++|..+++.+....+.....+..++..+...|++++|...+++++...+. +...+..
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 504 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAAN 504 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHH
Confidence 433 33455667788999999999999999999988888889999999999999999999999999987766 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCC
Q 005161 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGM 378 (711)
Q Consensus 299 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (711)
++..+...|++++|.+.++++...++. +..++..+...+...|+.++|...++++...+ +.+...+..++..+...|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC
Confidence 999999999999999999999877654 56678889999999999999999999998765 5567788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYY 458 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 458 (711)
+++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.... +.+...+..+..++...|++++|...++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998764 4578899999999999999999999999986543 4466778899999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCch
Q 005161 459 KILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDV 538 (711)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 538 (711)
++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.+..+....+.+
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 736 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS- 736 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-
Confidence 998764 3357788899999999999999999999998875 5677788888899999999999999999999887654
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005161 539 ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIY 618 (711)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (711)
.++..++.++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +++...++.+...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 677789999999999999999999998874 6778899999999999999999999999999863 66788999999999
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHH
Q 005161 619 GEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLE 696 (711)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 696 (711)
...|+ .+|+.+++++.+. .|+ +.++..+..++...|++++|.+.++++.+. .| +..++..++.++.+.|++++
T Consensus 815 ~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHH
Confidence 99999 8899999999984 454 778889999999999999999999999984 45 67899999999999999999
Q ss_pred HHHHHHHHH
Q 005161 697 AIKWSLWMK 705 (711)
Q Consensus 697 A~~~~~~m~ 705 (711)
|.+++++|.
T Consensus 890 A~~~~~~~~ 898 (899)
T TIGR02917 890 ARKELDKLL 898 (899)
T ss_pred HHHHHHHHh
Confidence 999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=292.07 Aligned_cols=655 Identities=10% Similarity=0.000 Sum_probs=403.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHH----------
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAY---------- 87 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 87 (711)
+-..++-+...++.+.|.+.++++.... +.++..+..+..++.+.|+.++|.+.++++.+.+|.+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4455566677788888888888777654 44666777777777788888888888888888777664432
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 88 ------SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 88 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
..++..+...|++++|++.|+.+.+.++.................|+.++|.+.++++.+.. +.+...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33344667777777777777777665432111111111122223477777777777777764 33566667777
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-hhHHHHHHHHHcCCCH
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNA-SNLYTLINLHAKYEDE 240 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 240 (711)
..+...|+.++|...|+++.+.. ... ...+...++.+...+..+.. ..+...+..+......
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~---~~~--------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSP---AGR--------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCC---Cch--------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 77777777777777777775521 100 01111111111111111110 1111112222222223
Q ss_pred HHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
+.+...+.........+..........+...|++++|...|++++..+|. +..++..+...+.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443333333322233455566667777777777777666555 56666777777777777777777777666
Q ss_pred hcCCCccH-hhH------------HHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 005161 321 WKDTVFED-NLY------------HLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 321 ~~~~~~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
..++.... ..| ......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55433211 111 112334567778888888888877654 3455566667777778888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005161 388 NLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIE-------PDAYLYCDMLRIYQQCGMLDKLSYLYYKI 460 (711)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (711)
++.+.. +.+...+..+...|. .++.++|+.+++.+....... -....+..+...+...|++++|.+.|++.
T Consensus 410 ~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 410 QALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 877653 224455555655553 456777777776552211000 01123445566677788888888888887
Q ss_pred HhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-c--
Q 005161 461 LKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-D-- 537 (711)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-- 537 (711)
++.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...... .
T Consensus 488 l~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 488 LALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 776432 45566677777888888888888888877643 334444444444556677888888877765332211 1
Q ss_pred -------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005161 538 -------VISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYT 610 (711)
Q Consensus 538 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (711)
...+..++..+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..++++.+.. +.+...
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a 639 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADA 639 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 11123455667788888888887762 35566677778888888888888888888888752 445677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCC--CC---CcchHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGI--EP---DKITYTNM 684 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l 684 (711)
+..++..+...|++++|.+.++++.+. .|+ ..++..+..++...|++++|.++++++....- .| +...+..+
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 888888888888888888888877763 454 56667777888888888888888888876211 11 11345556
Q ss_pred HHHHHhcchHHHHHHHHHHHH
Q 005161 685 ITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 685 ~~~~~~~~~~~~A~~~~~~m~ 705 (711)
...+...|++++|+..+++..
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777888888888888888764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-29 Score=279.43 Aligned_cols=619 Identities=11% Similarity=0.008 Sum_probs=337.5
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhH----------------HHHHHHHHccCCHHHHHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATF----------------GMLMGLYKKSWNVEEAEFAFNQMR 77 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~ 77 (711)
|..++....+.+.+.|+.++|.+.++++.+.. +.+.... ..+.+.+...|++++|.+.|+.+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 56778888889999999999999999999875 3232222 334457889999999999999999
Q ss_pred HcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 005161 78 KLGLVCES-AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIV- 155 (711)
Q Consensus 78 ~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 155 (711)
+.+|.+.. ............|+.++|++.++++.+..+. +...+..+...+...|+.++|...++++.+.... +..
T Consensus 140 ~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~a 217 (1157)
T PRK11447 140 NGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAA 217 (1157)
T ss_pred cCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHH
Confidence 88776532 2222223334569999999999999987755 6677888999999999999999999998764211 110
Q ss_pred -------------------HHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 156 -------------------AYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 156 -------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
.+...+..+-.......|...++........|+... ......+...|++++|...|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011111111111223334444443332211222111 122344555666666666666666
Q ss_pred hcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhH--------------HHHHHHHHHhcCCCCcHHHHHH
Q 005161 217 HLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSI--------------LGTLLQAYEKAGRTDNVPRILK 282 (711)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~ 282 (711)
+... .+...+..+..++.+.|++++|...|+++++..+..... .......+.+.|++++|...++
T Consensus 297 ~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5421 144555566666666666666666666666655543210 0112334445555555555555
Q ss_pred HhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCc
Q 005161 283 GSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPN 362 (711)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 362 (711)
+++..++. +..++..+...+...|++++|++.|++....++. +...+..+...+. .++.++|..+++.+........
T Consensus 376 ~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 376 QARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 55555443 4444555555555555555555555555544332 2223333333332 2344555555444322100000
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 005161 363 LHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLR 442 (711)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (711)
... . . ......+..+...+...|++++|++.|++..+.. +.+...+..+..
T Consensus 453 ~~~------------------------~-~--~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~ 503 (1157)
T PRK11447 453 DDI------------------------E-R--SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQ 503 (1157)
T ss_pred HHH------------------------H-H--HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 000 0 0 0001123334444444455555555554443321 112333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH---------HHHHHHHHH
Q 005161 443 IYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNI---------ITLNVMLDI 513 (711)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~ 513 (711)
.|.+.|++++|...++++.+.... +...+..+...+...++.++|+..++.+......++. ..+..+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 444455555555555444433211 2222222222333444455555444443221111111 111233455
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFK 593 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (711)
+...|+.++|.++++ ..+.++..+..+...+.+.|++++|+..|++..+.. |.+...+..++..+...|++++|.
T Consensus 583 l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 583 LRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666777777777665 344455566667777777777777777777777653 445666667777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CC---ChHhHHHHHHHHhccCChHHHHHHHHH
Q 005161 594 NVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL--RP---DLCSYNTLIKAYGIAGMVEDAVGLVKE 668 (711)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 668 (711)
+.++.+.+. -+.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|+..|++
T Consensus 658 ~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766653 123344555566666777777777777777765311 11 123455556667777777777777777
Q ss_pred HHH-cCCCC
Q 005161 669 MRE-NGIEP 676 (711)
Q Consensus 669 ~~~-~~~~p 676 (711)
... .|+.|
T Consensus 737 Al~~~~~~~ 745 (1157)
T PRK11447 737 AMVASGITP 745 (1157)
T ss_pred HHhhcCCCC
Confidence 652 34444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-26 Score=241.03 Aligned_cols=650 Identities=12% Similarity=-0.003 Sum_probs=445.6
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 17 LFNTLIYACN--KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 17 ~~~~~l~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
++.-++.+.. ..|++++|...|+.+++.. |-+..++..|...|.+.|+.++|+..+++..+.+|.+...+..+..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 3334444433 3489999999999998876 44577788888889999999999999999999888665555554333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhh
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA--------YSQQGKLEEAELVLVSMREAGFSPNIVAYNTL-MTGYG 165 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~ 165 (711)
+++.+|..+++++....+. +..++..+... |.+. +.|.+.++ .......|++.+.... ...|.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 8888999999998887655 45555555554 5444 55555555 3333334445544444 78888
Q ss_pred ccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHH
Q 005161 166 KVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR-AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAV 244 (711)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (711)
+.|+++.|.+.+.++.+.++ .+......|...|.. .++ +++..+++. .++.++.....+...+...|+.+.|.
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999999988764 344546667777777 366 777777553 23357778888888999999999999
Q ss_pred HHHHHHHHCCCCChhHHHHHHHHHHhcCCCC-cHHHHHHHhhhccCCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 005161 245 NTLDDMLNMGCQHSSILGTLLQAYEKAGRTD-NVPRILKGSLYQHVLFN-LTSCSILVMAYVKHGLIDDAMKVLGDKRWK 322 (711)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 322 (711)
.+++++....+..+.- ...+..+.+.+... .|..-|..- ..++ ......++..+.+.+.++.+.++..
T Consensus 268 ~~L~~~~~~~~~~~~~-~~~~~~l~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 337 (987)
T PRK09782 268 HYLIENKPLFTTDAQE-KSWLYLLSKYSANPVQALANYTVQ----FADNRQYVVGATLPVLLKEGQYDAAQKLLA----- 337 (987)
T ss_pred HHHHhCcccccCCCcc-HHHHHHHHhccCchhhhccchhhh----hHHHHHHHHHHHHHHHHhccHHHHHHHHhc-----
Confidence 8888876554431100 11111133333322 111111110 0001 1123344788888888887776632
Q ss_pred CCCccHhhHHHHHHH--HHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-C-CCCCH
Q 005161 323 DTVFEDNLYHLLICS--CKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSS-G-IRLDL 398 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 398 (711)
..|.... ..+.. ....+...++...+..|.+.. +-+......+.-.....|+.++|.++++..... + -.++.
T Consensus 338 -~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 338 -TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred -CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 2222222 12222 223466667777777776542 334555555555567888999999999888773 1 23344
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHhcCCC-CC--cHHHHHHHHHHHHHcCCH
Q 005161 399 IAFTVVVRMYVKAGS---LKDACAV----------------------LETMEKQKDI-EP--DAYLYCDMLRIYQQCGML 450 (711)
Q Consensus 399 ~~~~~l~~~~~~~~~---~~~A~~~----------------------~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~ 450 (711)
....-++..|.+.+. ..++..+ +.......+. ++ +...|..+..++.. ++.
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 455567777777655 3333222 2222222222 33 56677777777766 788
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005161 451 DKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMA 530 (711)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 530 (711)
++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...++..
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999888877664 44444334455556899999999999988654 444445566677888899999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005161 531 KKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYT 610 (711)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (711)
.+..+.....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+.. +.+...
T Consensus 569 L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a 645 (987)
T PRK09782 569 EQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNY 645 (987)
T ss_pred HhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 9887766666655656666779999999999999876 4568888889999999999999999999999863 456668
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITAL 688 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 688 (711)
++.+...+...|++++|+..+++..+ ..|+ ...+..+..++...|++++|+..+++..+ +.|+. .+.....+..
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHH
Confidence 88888899999999999999999998 4565 78899999999999999999999999998 77875 6666777888
Q ss_pred HhcchHHHHHHHHHHHHHhC
Q 005161 689 QRNDKFLEAIKWSLWMKQIG 708 (711)
Q Consensus 689 ~~~~~~~~A~~~~~~m~~~g 708 (711)
.+..+++.|.+-+++.-...
T Consensus 722 ~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 88888888888777655433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-25 Score=235.30 Aligned_cols=608 Identities=11% Similarity=0.009 Sum_probs=428.9
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
...|++++|+..|+++.+.+|.+..++..+...|...|++++|+..+++....++. |...+..+ . ..+++++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~L-a---~i~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSL-A---AIPVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHH-H---HhccChhHHH
Confidence 34599999999999999999999899999999999999999999999999887642 44444333 2 2289999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------hhccCChHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhcCCHHHHHHH
Q 005161 141 VLVSMREAGFSPNIVAYNTLMTG--------YGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM-IEGWGRAGNYREAKWY 211 (711)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 211 (711)
+++++.+.. +.+..++..+... |.+. ++|.+.++ .....+.|+....... ...|.+.|++++|+.+
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999999875 3356666666665 5555 55555554 3333334444444444 8899999999999999
Q ss_pred HHHHHhcCCCccHhhHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCC
Q 005161 212 YKELKHLGYKPNASNLYTLINLHAK-YEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVL 290 (711)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (711)
+.++.+.+.. +......+..+|.. .++ +.+..+++...+ ....+...++..|.+.|+.+.|.+++++.....+.
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999998543 34446666667777 366 777777553222 34478889999999999999999999887654333
Q ss_pred -cchhHHHHHHHHHHhcCCHH-HHHHHHHhhhhcCCCccH-hhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHH
Q 005161 291 -FNLTSCSILVMAYVKHGLID-DAMKVLGDKRWKDTVFED-NLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMC 367 (711)
Q Consensus 291 -~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (711)
|+..+|.-+ +.+.+... .|..-|.+ ...++. ...-.++..+.+.+.++.+.++.. +.|......
T Consensus 280 ~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 346 (987)
T PRK09782 280 DAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLE 346 (987)
T ss_pred CCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHH
Confidence 444444333 34444432 11111111 000110 112334677888898887776622 233322221
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHH
Q 005161 368 TMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEK-QKDIEPDAYLYCDMLRIYQQ 446 (711)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 446 (711)
.-.......+...++.+.+..+.... +-+......+.....+.|+.++|.++|+.... ......+......++..|.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 11222234466777777777777652 23666666666777889999999999998855 22233444555677888877
Q ss_pred cCC---HHHHHHH----------------------HHHHHhc-CC-CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 447 CGM---LDKLSYL----------------------YYKILKS-GI-TW--NQELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 447 ~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
.+. ...+..+ +...... +. ++ +...+..+..++.. ++.++|+..+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 765 3333322 1111111 11 23 55667777776666 788899998888876
Q ss_pred CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 005161 498 HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYN 577 (711)
Q Consensus 498 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 577 (711)
. .|+......+...+...|++++|...++.+... +++...+..+..++.+.|++++|...+++..+.. +.....+.
T Consensus 505 ~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 505 R--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred h--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 5 355544444455557899999999999987665 3444556777888999999999999999998864 33444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhcc
Q 005161 578 SMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIA 656 (711)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 656 (711)
.+.......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++.++. .|+ ...++.+..++...
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 4444455669999999999999984 578889999999999999999999999999984 676 77889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhC
Q 005161 657 GMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIG 708 (711)
Q Consensus 657 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 708 (711)
|++++|+..+++..+ +.|+ ...+..+..++...|++++|...+++..+..
T Consensus 657 G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 657 GDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999998 7785 5788899999999999999999999987654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-24 Score=209.18 Aligned_cols=562 Identities=12% Similarity=0.084 Sum_probs=429.7
Q ss_pred hHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 31 VELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-ESAYSAMITIYTRLSLYEKAEEVIRL 109 (711)
Q Consensus 31 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 109 (711)
++.|...|...++.. ++|+..+..-..+....+++..|+.+|..+...+|.. +.....+..++.+.|+.+.|+..|++
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 578888888888764 5565555544555567889999999999999988875 56777788888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCC
Q 005161 110 IREDKVVPNLENWLVMLNAYSQQ---GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE 186 (711)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (711)
+++.++. +..++..+...-... ..+..++.++...-... +.++.+.+.|...|.-.|+++.+..+...+......
T Consensus 225 alqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 225 ALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9997753 444544443333333 33556666666665553 458888999999999999999999999998875321
Q ss_pred C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHH
Q 005161 187 P--DETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTL 264 (711)
Q Consensus 187 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 264 (711)
. -+..|..+.++|...|++++|..+|.+........-...+..+...+.+.|+++.+...|+.+.+..|....+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 1 23347889999999999999999999887753222234566788999999999999999999999999988999889
Q ss_pred HHHHHhcC----CCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh----hhcCCCccHhhHHHHHH
Q 005161 265 LQAYEKAG----RTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK----RWKDTVFEDNLYHLLIC 336 (711)
Q Consensus 265 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~ 336 (711)
...|...+ ..+.|..++.+.....+. |..+|-.+...+....-+.. +..+... ...+..+.+...|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 88888775 567788888888887766 88999998888876555444 6666543 34455577889999999
Q ss_pred HHHccCChhhHHHHHHHHhhc---CCCCcH------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH
Q 005161 337 SCKDSGHLANAVKIYSHMHIC---DGKPNL------HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI-AFTVVVR 406 (711)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 406 (711)
.+...|+++.|...|...... ...++. .+--.+.......++++.|.+.|..+.+. .|... .|.-+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999988654 122333 22334555667778999999999999886 34432 3333332
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHcc---
Q 005161 407 MYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG-ITWNQELYDCVINCCARA--- 482 (711)
Q Consensus 407 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--- 482 (711)
+-...+...+|...++.........| ..++.+...+.+...+..|.+-|....+.. ..+|+.+...|.+.|.+.
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np--~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNP--NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCc--HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 33334778899999998876654444 455666778888888988988777776554 335777776777755432
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 483 ---------LPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553 (711)
Q Consensus 483 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 553 (711)
+..+.|+++|.++++.. |.|...-|.+.-+++..|++.+|..+|.+..+.......+|..+..+|...|+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence 45678999999988764 66888888888889999999999999999998877778899999999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 554 LESMSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602 (711)
Q Consensus 554 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (711)
+..|++.|+...+. ....+..+...|..++...|.+.+|...+......
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999987766 33456778889999999999999999998888764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-23 Score=201.93 Aligned_cols=681 Identities=13% Similarity=0.079 Sum_probs=446.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcC----CCCCHh---hHHHHHHHHHcc-----------CCHHHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECD----VQPNVA---TFGMLMGLYKKS-----------WNVEEAEFAFNQM 76 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~-----------g~~~~A~~~~~~~ 76 (711)
.++|..+...|...|.+++...+++..+-.. -.++.. .+..|..-+... ..+..|..+|..+
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 6788899999999999999999888776211 011111 111222222121 1234566666666
Q ss_pred HHcCCCchhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC
Q 005161 77 RKLGLVCESAYSAMITIYTRLSL--YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG--FSP 152 (711)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 152 (711)
...+......+..-...|...|. .+.|...|..+++..+. |.-.+..-+......+++-.|..+|+.+.... .+|
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a 199 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKA 199 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC
Confidence 55554433333333333333443 47888888887776543 55454444444556788999999999876653 344
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCccHhhHHH
Q 005161 153 NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR---AGNYREAKWYYKELKHLGYKPNASNLYT 229 (711)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (711)
|+. -.+..++.+.|+.+.|...|++..+.++ .++.++..|...-.. ...+..+..++...-..+ .-|+...+.
T Consensus 200 D~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 200 DVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred Ccc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 443 2334566788899999999998887432 222222222221111 234556666666665442 336777888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhc
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLNMGCQHS---SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKH 306 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (711)
|...+...|+++.+..+...+........ ..+..++++|...|+++.|...+......++..-...+.-+.+.+.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 88888888999999988888877653333 557788899999999999999998888776653355666788889999
Q ss_pred CCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccC----ChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHH
Q 005161 307 GLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSG----HLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEA 382 (711)
Q Consensus 307 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (711)
|+++.+...|+.+....+. +..+...+...|...+ ..+.|..++....+.. +.|...|..+...+...+-+..
T Consensus 356 ~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s- 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS- 432 (1018)
T ss_pred chHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-
Confidence 9999999999888776654 4456666666666554 4566667776666543 5577778777776665544433
Q ss_pred HHHHHHHH----hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCcH------HHHHHHHHHHHHcCCH
Q 005161 383 EKLYLNLK----SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKD--IEPDA------YLYCDMLRIYQQCGML 450 (711)
Q Consensus 383 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~~~ 450 (711)
+..|..+. ..+..+.+...|.+...+...|+++.|...|+....... ..++. .+--.+..+.-..++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 66665443 344457788889999999999999999999887744311 11222 2233345556667788
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005161 451 DKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMA 530 (711)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 530 (711)
+.|.+.|..+.+..+. -...|..++......++..+|...+...+..+ ..++..++.+...+.....+..|.+-|..+
T Consensus 513 ~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 8899999888876321 12233333323334467788888888887643 344555555666777788888888877766
Q ss_pred HHcCC--CchhHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 531 KKLGL--VDVISYNTIIAAYGQ------------NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVL 596 (711)
Q Consensus 531 ~~~~~--~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (711)
.+... +|..+...|...|.. .+..++|++.|.+..+.. |.+...-|-+.-.++..|++++|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 65443 456666666665532 234567888888877764 667777777888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 005161 597 RRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL-RPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIE 675 (711)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 675 (711)
.+..+.. .....+|-.+.++|..+|++..|+++|+...+.-. ..+..+.+.|.+++...|.+.+|.+.+..... ..
T Consensus 670 sqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~ 746 (1018)
T KOG2002|consen 670 SQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LA 746 (1018)
T ss_pred HHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hC
Confidence 9888763 34556788888999999999999999988776433 33477888889999999999999888888776 55
Q ss_pred CCc--chHHHHHHHH------------------HhcchHHHHHHHHHHHHHhCc
Q 005161 676 PDK--ITYTNMITAL------------------QRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 676 p~~--~~~~~l~~~~------------------~~~~~~~~A~~~~~~m~~~g~ 709 (711)
|.. ..++..+... ...+..++|.++|.+|...+-
T Consensus 747 p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred CccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 532 2222221111 112456778888888776654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-23 Score=194.59 Aligned_cols=434 Identities=15% Similarity=0.136 Sum_probs=312.2
Q ss_pred CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 238 EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLG 317 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 317 (711)
|++.+|++....+-..++...+....+...+.+..+.+.....-...+...+. -..+|+.+.+.+-..|++++|+.+++
T Consensus 62 gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred cCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 34444443333333333333333333333344444444433333333333333 34566666666666677777777666
Q ss_pred hhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHH-HHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 005161 318 DKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMC-TMIDTYSVMGMFTEAEKLYLNLKSSGIRL 396 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 396 (711)
.+.+..+. ....|..+..++...|+.+.|.+.|...++. .|+..... .+.......|++.+|...|.+.++.. +.
T Consensus 141 ~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~ 216 (966)
T KOG4626|consen 141 AAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PC 216 (966)
T ss_pred HHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-Cc
Confidence 66655544 3445666666777777777777777666653 34443332 23333445677778877777777652 12
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 397 DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD-AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCV 475 (711)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (711)
=..+|..|...+...|+...|++.|++..+. .|+ ...|-.|...|...+.++.|...+.+..... +.....+..+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNl 292 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNL 292 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhccce
Confidence 2356777777777788888888888777543 333 4567777778888888888888887776653 2245667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPN-IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNL 554 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 554 (711)
...|...|.++-|+..|++.++. .|+ ...|+.|..++-..|+..+|.+.+.+.....+....+.+.|...|...|.+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 77888899999999999999876 344 667899999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHH
Q 005161 555 ESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDH-YTYNIMIDIYGEQGWINEVVGVLTE 633 (711)
Q Consensus 555 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (711)
++|..+|....+-. +.-....+.|...|-+.|++++|...+++.++ +.|+- ..++.+...|-..|+.+.|.+.+.+
T Consensus 371 e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 371 EEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred hHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 99999999988752 34456778899999999999999999999987 57764 5899999999999999999999999
Q ss_pred HHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHH
Q 005161 634 LKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITALQ 689 (711)
Q Consensus 634 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 689 (711)
.+. +.|. ...++.|...|..+|+..+|+..|++..+ ++||. ..+..++.++.
T Consensus 448 AI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 448 AIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 998 6787 78899999999999999999999999998 88985 56666666554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=190.01 Aligned_cols=433 Identities=16% Similarity=0.128 Sum_probs=346.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 19 NTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS 98 (711)
Q Consensus 19 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (711)
..+.+-..+.|++.+|++.-...-+++ +.+......+-..+.+..+++....--....+.+++..++|..+.+++-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 345556667888888888666555543 3344444444556667777777776666677778888899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhccCChHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAY-NTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~ 177 (711)
++++|+..++.+.+..+. ....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+...|+.++|...|
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999887655 6788999999999999999999999999886 4554433 33444445578999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
.+..+..+ -=.+.|+.|...+-.+|+...|++.|++.... .|+ ...|..+...|...+.+++|...+.+.....|.
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 88877542 23566888888888999999999999998875 444 567888899999999999999999999998888
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHH
Q 005161 257 HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLIC 336 (711)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 336 (711)
...++..++..|...|..|-|...+++.++..|. =..+|+.|..++-..|++.+|.+.+.+...-.+. ...+.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 8888899999999999999999999999988776 4678999999999999999999999888766554 4457788889
Q ss_pred HHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChH
Q 005161 337 SCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD-LIAFTVVVRMYVKAGSLK 415 (711)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 415 (711)
.+...|.++.|..+|+....-. +.-...++.+...|-.+|++++|...|++.+.- .|+ ...|+.+...|-..|++.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999887642 223457888888999999999999999998874 455 467888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005161 416 DACAVLETMEKQKDIEPD-AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT 466 (711)
Q Consensus 416 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 466 (711)
.|++.+.+.+.. .|. ...++.|...|...|++.+|+.-++..++....
T Consensus 440 ~A~q~y~rAI~~---nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 440 AAIQCYTRAIQI---NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHhc---CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999887553 343 567888999999999999999999998887544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-18 Score=160.02 Aligned_cols=610 Identities=12% Similarity=0.060 Sum_probs=483.2
Q ss_pred CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 64 WNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLV 143 (711)
Q Consensus 64 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 143 (711)
+|+..|..+++.+.+.+|.++..|.+-.+.--..|++..|..+...=.+.-+. +...|...+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-SeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-SEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-hHHHHHHHH----hcCChHHHHHHHH
Confidence 47788999999999999999999999999999999999999988765554443 556664443 5667777888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 005161 144 SMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN 223 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 223 (711)
..++. ++.++..|..-... ..+...-.+++.+..+. ++.+...|-.. +...+.+.|.-++.+..+. ++..
T Consensus 340 ~Avr~-~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 340 NAVRF-LPTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHHh-CCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccch
Confidence 88876 34455555444332 23344445666666664 23455556544 4556777798888888875 2222
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhh----ccCCcchhHHHHH
Q 005161 224 ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLY----QHVLFNLTSCSIL 299 (711)
Q Consensus 224 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l 299 (711)
.. |.-++++..-++.|..+++...+.-|....++......-...|..+...+++.+.+. .++..+...|..=
T Consensus 410 ~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 410 MD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 22 344566677889999999999998888888888888888889999999988876543 4666788888888
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhcCCCcc--HhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccC
Q 005161 300 VMAYVKHGLIDDAMKVLGDKRWKDTVFE--DNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMG 377 (711)
Q Consensus 300 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 377 (711)
...+-..|..-.+..+......-|+.-. ..+|..-...|.+.+.++-|..+|...++.. +.+...|......--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcC
Confidence 8888888888888888887766665433 3578888999999999999999999998763 556777888877777889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005161 378 MFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLY 457 (711)
Q Consensus 378 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (711)
..+....++++.... ++-....|......+...|++..|..++....... +.+...|..-+.....+..++.|..+|
T Consensus 565 t~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred cHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 999999999999886 34456677777888888999999999999886543 346678888888889999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCc
Q 005161 458 YKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD 537 (711)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 537 (711)
.+.... .|+..+|..-+...--.++.++|++++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+..|..
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 988775 567777777777777789999999999999876 34445677788889999999999999999888888889
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 538 VISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDI 617 (711)
Q Consensus 538 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (711)
...|..+...--+.|++-+|..++++..-.+ |.+...|...+..-.+.|..+.|..+..+.+.. ++.+...|...|..
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 9999999999999999999999999998776 778889999999999999999999999988875 56677788888888
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHH
Q 005161 618 YGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLE 696 (711)
Q Consensus 618 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 696 (711)
..+.++-......+++ +.-|+...-.+...+....++++|.+.|.+..+ +.||. .+|..+.+.+.++|.-++
T Consensus 797 e~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred ccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHH
Confidence 7777765555444443 466778888888888899999999999999998 67875 789999999999998888
Q ss_pred HHHHHHHHHHhC
Q 005161 697 AIKWSLWMKQIG 708 (711)
Q Consensus 697 A~~~~~~m~~~g 708 (711)
-.+++++.....
T Consensus 870 ~kev~~~c~~~E 881 (913)
T KOG0495|consen 870 QKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHhccC
Confidence 888888765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-18 Score=166.88 Aligned_cols=673 Identities=12% Similarity=0.055 Sum_probs=392.0
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
|.+...-.....+.-+|++++|.+++.+.++.. +.+...|..|..+|-..|+.+.+...+-.+--.+|.+...|..+..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 434445555556666799999999999999986 6788899999999999999999999988888888888899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccC
Q 005161 93 IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN----TLMTGYGKVS 168 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~ 168 (711)
...+.|++.+|.-.|.++++.++. +...+-.-+..|-+.|+...|.+.|.++.+..++.|..-.. ..+..+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999887654 44455566778888999999999999999875432322222 2345566677
Q ss_pred ChHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 005161 169 NMEAAQRLFLSIKDV-GLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (711)
+-+.|.+.++..... +-..+...++.++..+.+...++.|......+.....++|..-+.+--. +. .-.
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-----~~~ 364 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-----EEP 364 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-----ccc
Confidence 778888888876652 2234555678888889999999999988888776433333322210000 00 000
Q ss_pred HHHHHCC--CCCh-hHHHHHHHHHHhcCCCCcHHHHHHHhhhcc--CCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 005161 248 DDMLNMG--CQHS-SILGTLLQAYEKAGRTDNVPRILKGSLYQH--VLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK 322 (711)
Q Consensus 248 ~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 322 (711)
.-....+ ...+ .+ -.+.-++...+..+....+.......+ +.-+...+.-+..+|...|++.+|+++|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 0000000 0000 11 112222222222222222222222222 2223444555555555555555555555555544
Q ss_pred CCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------CCC
Q 005161 323 DTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS--------SGI 394 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~ 394 (711)
...-+...|-.+..+|...|..+.|++.|+..+... +.+...-..+...+.+.|+.++|.+.+..+.. .+.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 443344455555555555555555555555554432 22333334444445555555555555555321 112
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC-----------------CCCcHHHHHHHHHHHHHcCCHHHH
Q 005161 395 RLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ----KD-----------------IEPDAYLYCDMLRIYQQCGMLDKL 453 (711)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-----------------~~~~~~~~~~l~~~~~~~~~~~~a 453 (711)
.|+..........+.+.|+.++-+.+-..|... .- ..........++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 233333334444455555544433322222110 00 111112222223333333222111
Q ss_pred HHH------HHHHHhcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CccH---HHHHHHHHHHhccCcH
Q 005161 454 SYL------YYKILKSGITWNQ--ELYDCVINCCARALPIDELSRVFDEMLQHGF--TPNI---ITLNVMLDIYGKAKLF 520 (711)
Q Consensus 454 ~~~------~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~ 520 (711)
..- +..-...++..+. ..+..++.+.++.+..++|..+...+..... .++. ..-...+.+....+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 111 1111122222222 2456677788899999999999888875421 1222 2234455667789999
Q ss_pred HHHHHHHHHHHHc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 005161 521 KRVRKLFSMAKKL-----GLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNV 595 (711)
Q Consensus 521 ~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (711)
..|...+..+... .+.-...|+.......+.++-..-..++..+......-++..+..........+.+..|...
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHH
Confidence 9999999988877 44455667766666666666554444444444332222233333344555678899999998
Q ss_pred HHHHHHcCCCCCHHHHHHHH-HHHhh----------cCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHhccCChHHHH
Q 005161 596 LRRMKETSCTFDHYTYNIMI-DIYGE----------QGWINEVVGVLTELKECGLR-PDLCSYNTLIKAYGIAGMVEDAV 663 (711)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~-~~~~~----------~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 663 (711)
+-++... .|+....+.++ .++.. .-.+-+++.++.+..+.... -...++..+.++|-..|-+.-|.
T Consensus 763 y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 763 YMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888764 56644444333 22211 11244677777777663222 13567778899999999999999
Q ss_pred HHHHHHHHcCCCCC-------------cchHHHHHHHHHhcchHHHHHHHHHH
Q 005161 664 GLVKEMRENGIEPD-------------KITYTNMITALQRNDKFLEAIKWSLW 703 (711)
Q Consensus 664 ~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 703 (711)
.+|++.+. +.|- ...-..|.-.|..+|+...|..++++
T Consensus 841 ~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 841 SYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999986 4321 11223344568899999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-19 Score=186.81 Aligned_cols=360 Identities=11% Similarity=-0.025 Sum_probs=208.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
+...-..+...|+++.|+..|+.+++. .|+...|..+..+|.+.|++++|++.+..+.+.+|....+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667788899999999999999875 567788888889999999999999999999999998888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|++++|+..|..+...+...+. ....++..+.. ..+........+.. +++...+..+...+ ..........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhh
Confidence 9999999888776554322121 11222222211 12223333333332 22222222222221 111111111112
Q ss_pred HHHHhcCCCCCh-hhHHHHHHHH---HhcCCHHHHHHHHHHHHhcC-CCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005161 178 LSIKDVGLEPDE-TTYRSMIEGW---GRAGNYREAKWYYKELKHLG-YKP-NASNLYTLINLHAKYEDEEGAVNTLDDML 251 (711)
Q Consensus 178 ~~~~~~~~~~~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (711)
+...+. .++. ..+..+...+ ...+.+++|...|++..+.+ ..| ....+..+...+...|++++|...+++.+
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 211111 1111 1111111111 22467888888888887754 223 33456666677777888888888888888
Q ss_pred HCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhH
Q 005161 252 NMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLY 331 (711)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 331 (711)
+..|.....+..++..+...|++++|...++.++..++. +..+|..+...+...|++++|+..|++....++. +...+
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 777665566666666666667777777766666665544 4556666666666666666666666655544332 22333
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 332 HLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS 391 (711)
Q Consensus 332 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 391 (711)
..+...+.+.|++++|+..|+..++.. +.+...++.+...+...|++++|.+.|+....
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 444444444555555555555444321 22334444444444445555555555544444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-20 Score=189.73 Aligned_cols=361 Identities=9% Similarity=-0.025 Sum_probs=196.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
++..+.+.|+++.|+.+++.+....|.+..++..++.++...|++++|...++++....+. +...+..+...+.+.|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 4444555666666666666666666655555555555556666666666666666555433 444555555566666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
++|...++++.+.. +.+...+..++..+...|++++|...++.+....+.+ ...+..+ ..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 66666666665542 2344555555666666666666666666554433211 2222222 2345556666666666665
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc----HHHHHHHhhhccCCc
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN----VPRILKGSLYQHVLF 291 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~ 291 (711)
......++......+...+...|++++|...++++.+..+.....+..++..+...|++++ |...++.++...|.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 5443222333333344555566666666666666666655555556666666666666654 56666666665554
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcH-HHHHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNL-HIMCTMI 370 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 370 (711)
+..++..+...+...|++++|...+++....++. +...+..+...+.+.|++++|+..++.+.... |+. ..+..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 5556666666666666666666666666555433 33345555566666666666666666665542 222 2233334
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHH
Q 005161 371 DTYSVMGMFTEAEKLYLNLKSSGIRLDLI----AFTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
.++...|+.++|...|+...+........ +...+-.++...+...+......++
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 45566666666666666665542221122 2233333344444454444444444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-19 Score=184.99 Aligned_cols=428 Identities=11% Similarity=-0.047 Sum_probs=293.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh
Q 005161 226 NLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK 305 (711)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (711)
.+......+...|+++.|...|++.++..+. ...+..+..+|.+.|++++|...++.++..++. +..++..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 4556777888899999999999999888775 457778888899999999999999998887766 67788888999999
Q ss_pred cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 005161 306 HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKL 385 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 385 (711)
.|++++|+.-|......+...+. ....++..... ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 99999998887665444322111 12222222111 12222233332221 222222222222 2111111111111
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHH---HHcCChHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005161 386 YLNLKSSGIRLDL-IAFTVVVRMY---VKAGSLKDACAVLETMEKQKDIEP-DAYLYCDMLRIYQQCGMLDKLSYLYYKI 460 (711)
Q Consensus 386 ~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (711)
+....+. .+.. ..+..+...+ ...+++++|.+.|+.........| ....+..+...+...|++++|...+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211111 1111 1111111111 224678899999988865433333 4456777788888899999999999988
Q ss_pred HhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhH
Q 005161 461 LKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS 540 (711)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 540 (711)
+.... .....+..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...|+......|.+...
T Consensus 358 l~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 358 IELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 87642 235567777888888899999999999888763 4456778888888888999999999999999888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H-------HHH
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDH-Y-------TYN 612 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~-------~~~ 612 (711)
+..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|...|++..+. .|+. . .++
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHH
Confidence 8888888999999999999999888753 556778888888899999999999999998864 2221 1 112
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.....+...|++++|.+++++.++. .|+ ...+..++.++...|++++|++.|++..+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222334468899999999988874 455 55788888999999999999999999876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-19 Score=186.31 Aligned_cols=334 Identities=11% Similarity=0.028 Sum_probs=273.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
...++..+.+.|++.+|..+++..+... +-+...+..++.++...|+++.|...|+++.+.+|....++..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3456778889999999999999998875 334555566667777899999999999999999999888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|++++|...++++....+. +...+..++..+...|++++|...++.+....+. +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999999886544 5677888889999999999999999988776433 33444333 3477889999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHH----HHHHHHHHHHC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG----AVNTLDDMLNM 253 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 253 (711)
+.+.+....++...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998775443444555566778889999999999999998864 2356677788889999999885 89999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHH
Q 005161 254 GCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHL 333 (711)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 333 (711)
.|.....+..++..+...|++++|...++.++..+|. +...+..+...+.+.|++++|+..|+.+...++. +...+..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~ 357 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRY 357 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 8888889999999999999999999999999988777 6778888999999999999999999988876544 2233444
Q ss_pred HHHHHHccCChhhHHHHHHHHhhcC
Q 005161 334 LICSCKDSGHLANAVKIYSHMHICD 358 (711)
Q Consensus 334 l~~~~~~~~~~~~a~~~~~~~~~~~ 358 (711)
+..++...|+.++|...|+...+..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5667888999999999999987753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=186.30 Aligned_cols=304 Identities=11% Similarity=0.100 Sum_probs=213.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHc
Q 005161 370 IDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEP--DAYLYCDMLRIYQQC 447 (711)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 447 (711)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.......+ ....+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567788888999998888864 23556788888888888889899888888855322211 124567777888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHhccCcHHHH
Q 005161 448 GMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPN----IITLNVMLDIYGKAKLFKRV 523 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 523 (711)
|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887653 33566777778888888888888888888776542221 12334555666777888888
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 524 RKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS 603 (711)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (711)
...++++.+..+.+...+..++..+.+.|++++|.++++++...+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 8888877776666666777777777778888888888777776532222455667777777777888887777777764
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCCcc
Q 005161 604 CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGI---AGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
.|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++..+++|.+.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 455555667777777777777888777777763 5776677766665553 457777777777777766666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-16 Score=146.21 Aligned_cols=578 Identities=10% Similarity=0.030 Sum_probs=453.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
++..+|..++..+.+.++. ++..|.+-.+.--..|++..|..+...--+. ++.+..+|-.-+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 5678899999999888866 5666766666666678888887776654443 345666665444 345677788887
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
......- +.++..|--.+.. ..+...-..++++..+. ++.+...| .+.....+.+.|+-++.++.+.-|.+
T Consensus 339 A~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LW----KaAVelE~~~darilL~rAveccp~s 409 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLW----KAAVELEEPEDARILLERAVECCPQS 409 (913)
T ss_pred HHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHH----HHHHhccChHHHHHHHHHHHHhccch
Confidence 7777643 2334444322221 22333445566666664 22233333 34445666777999999999877776
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHh----hhhcCCCccHhhHHH
Q 005161 258 SSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGD----KRWKDTVFEDNLYHL 333 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~ 333 (711)
...+..+ .+..-++.|.+++.++.+.-|. +...|.+-...--.+|+.+...+++.+ +...|+..+...|-.
T Consensus 410 ~dLwlAl----arLetYenAkkvLNkaRe~ipt-d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MDLWLAL----ARLETYENAKKVLNKAREIIPT-DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 6655544 4455678899999988776555 889999888888899999999888765 556788888889988
Q ss_pred HHHHHHccCChhhHHHHHHHHhhcCCCC--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005161 334 LICSCKDSGHLANAVKIYSHMHICDGKP--NLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA 411 (711)
Q Consensus 334 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (711)
=...|-..|..-.+..+....+.-|+.. -..+|..-.+.|.+.+.++-+..+|...++- ++.+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 8889999999999999999988777643 3468999999999999999999999999886 455777888887777778
Q ss_pred CChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 005161 412 GSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRV 491 (711)
Q Consensus 412 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 491 (711)
|..+.-..+|++..... +.....|......+...|+...|..++....+.... +..++...+.....+.++++|..+
T Consensus 564 gt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred CcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999987653 445566777778888899999999999999988655 788899999999999999999999
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005161 492 FDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV 571 (711)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 571 (711)
|.+.... .|+...|.--+..---.++.++|.++++...+..+.-...|..+.+.+-+.++.+.|.+.|..-.+. +|.
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~ 717 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPN 717 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCC
Confidence 9998875 5677777666666666899999999999999999888999999999999999999999999887665 567
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 005161 572 SLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIK 651 (711)
Q Consensus 572 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 651 (711)
.+..|..+...-.+.|..-.|..++++..-.+ +.+...|-..|.+-.+.|+.+.|..+..+..+. ++.+...|..-|+
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIW 795 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHH
Confidence 77888888888889999999999999998664 667889999999999999999999999998885 4555778888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 652 AYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 652 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
..-+.++-.+....+++ ..-|+.+...+...+....+++.|.+||++..+.+.
T Consensus 796 le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred hccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 88777776666665555 456888888999999999999999999999887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-18 Score=183.82 Aligned_cols=410 Identities=10% Similarity=0.019 Sum_probs=295.6
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
..+.+.....-.+......|+.++|++++..+.... +.+...+..+..++.+.|++++|..+|+.+.+..|.+..++..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445677777888889999999999999999998733 4566678889999999999999999999999999988888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 90 MITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
++.++...|++++|+..++++....+. +.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999887644 555 8888889999999999999999999975 3366667778888888899
Q ss_pred hHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCccHh-hH----HH
Q 005161 170 MEAAQRLFLSIKDVGLEPDE------TTYRSMIEGWG-----RAGNY---REAKWYYKELKHL-GYKPNAS-NL----YT 229 (711)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ 229 (711)
.+.|.+.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987664 2331 11222222222 12234 6788888888754 2233221 11 11
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCC-ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCc---chhHHHHHHHHHHh
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLNMGCQ-HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF---NLTSCSILVMAYVK 305 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 305 (711)
.+..+...|+.++|+..|+.+.+.++. |......+...+...|++++|...++.++..++.. .......+..++..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 133445678999999999999887654 44444556788889999999999999887665432 13445666667888
Q ss_pred cCCHHHHHHHHHhhhhcCCC-----------ccH---hhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005161 306 HGLIDDAMKVLGDKRWKDTV-----------FED---NLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMID 371 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~~-----------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (711)
.|++++|..+++.+....+. |+. ..+..+...+...|+.++|++.++++.... +.+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 89999999988887765431 221 233445556667777777777777776553 445666666777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 005161 372 TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQK 428 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 428 (711)
.+...|++++|++.++.+.... +.+...+......+...|++++|..+++.+.+..
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777653 2234555556666677777777777777776543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-16 Score=156.71 Aligned_cols=640 Identities=15% Similarity=0.099 Sum_probs=414.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
..+.+...|++++|++++..+.+.+|....+|..|..+|-+.|+.+++...+-.+--.++. |..-|..+.....+.|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccH
Confidence 3344445599999999999999999999999999999999999999999888766555544 668899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHH----HHHHHHhcCCHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRS----MIEGWGRAGNYREAKWY 211 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~ 211 (711)
+.|.-.+.++++.. +++....-.-+..|-+.|+...|..-|.++....+..|..-... .++.+...++.+.|++.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999986 44555555667788899999999999999988654333333333 34556667777999999
Q ss_pred HHHHHhcC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCC
Q 005161 212 YKELKHLG-YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVL 290 (711)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (711)
++.....+ -..+...++.++..+.+...++.+.............+++.-. ..... ++ ..-..++ -...+..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~---~~~~~-~~-~~~~~~~--~~~~~~s 375 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW---DTDER-RR-EEPNALC--EVGKELS 375 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh---hhhhh-cc-ccccccc--cCCCCCC
Confidence 98887632 2234456778888888888888887776666553222220000 00000 00 0000000 0111222
Q ss_pred cchhH-HHHHHHHHHhcCCHHHHHHHHHhhhhcC--CCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHH
Q 005161 291 FNLTS-CSILVMAYVKHGLIDDAMKVLGDKRWKD--TVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMC 367 (711)
Q Consensus 291 ~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (711)
++..+ ...+.-...+.+...+++ .......+ +.-+...|..+..++...|++..|+.+|..+.....-.+...|-
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~l--l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEAL--LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHH--HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 33333 222222233344444444 44444444 44455678899999999999999999999998876666788999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCCcHHHHHHH
Q 005161 368 TMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEK-------QKDIEPDAYLYCDM 440 (711)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l 440 (711)
.+..+|...|..++|.+.|..+.... +.+..+-.+|...+-+.|+.++|.+.+..+.. .....|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 99999999999999999999999863 33556667788889999999999999998631 12234455555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----------------------CCCChhhHHHHHHHHHccCCHHHHHHH------H
Q 005161 441 LRIYQQCGMLDKLSYLYYKILKSG----------------------ITWNQELYDCVINCCARALPIDELSRV------F 492 (711)
Q Consensus 441 ~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~------~ 492 (711)
...+.+.|+.++-...-..|+... ..........++.+-.+.++......- +
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 667778888777544444433211 111222223333333333332221111 1
Q ss_pred HHHHhCCCCccH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--Cchh----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 493 DEMLQHGFTPNI--ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VDVI----SYNTIIAAYGQNKNLESMSSTVQEM 564 (711)
Q Consensus 493 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~ 564 (711)
.....+++..+. ..+..++...++.+.+++|..+...+..... .+.. .-...+.+....+++..|...++.+
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111123333222 2445567788899999999999998877665 2222 2345566778899999999999998
Q ss_pred HHC-CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 005161 565 QFD-GF---SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLR 640 (711)
Q Consensus 565 ~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (711)
... +. +--...|+.......+.++----.+.+..+....-..++.......+.....+.+..|+..+-++-. ..
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~ 770 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QN 770 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hC
Confidence 876 11 2234456655566666665544445555444321111223333333445667889999998877766 46
Q ss_pred CChHhHHHHH-HHHh----------ccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHHHHHHHHHHHHhC
Q 005161 641 PDLCSYNTLI-KAYG----------IAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLEAIKWSLWMKQIG 708 (711)
Q Consensus 641 p~~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 708 (711)
|+...++.++ .++. ++-..-.++.++++..+....- .......++++|...|=..-|..++++....-
T Consensus 771 pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 7755444433 2221 1222455667777666532211 24677889999999999999999999987664
Q ss_pred c
Q 005161 709 L 709 (711)
Q Consensus 709 ~ 709 (711)
+
T Consensus 851 p 851 (895)
T KOG2076|consen 851 P 851 (895)
T ss_pred c
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-20 Score=182.51 Aligned_cols=311 Identities=13% Similarity=0.063 Sum_probs=238.5
Q ss_pred HHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 005161 335 ICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD---LIAFTVVVRMYVKA 411 (711)
Q Consensus 335 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 411 (711)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567788899999999988764 44566788888888889999999999988887532221 24567788888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCCHHH
Q 005161 412 GSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQ----ELYDCVINCCARALPIDE 487 (711)
Q Consensus 412 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 487 (711)
|++++|..+|+.+.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999888653 2456778888888899999999999999988876543322 234556667788899999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD-VISYNTIIAAYGQNKNLESMSSTVQEMQF 566 (711)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 566 (711)
|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...++.+ ..++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999888753 3345567777788888999999999999888776543 45678888889999999999999998887
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHCCCCCCh
Q 005161 567 DGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE---QGWINEVVGVLTELKECGLRPDL 643 (711)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 643 (711)
. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6 355566678888888999999999999888874 6788888877776664 45888899999988887777776
Q ss_pred HhHHHHHHHHhccCCh
Q 005161 644 CSYNTLIKAYGIAGMV 659 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~ 659 (711)
. ++|.++|..
T Consensus 354 ~------~~c~~cg~~ 363 (389)
T PRK11788 354 R------YRCRNCGFT 363 (389)
T ss_pred C------EECCCCCCC
Confidence 5 346666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-19 Score=186.50 Aligned_cols=415 Identities=10% Similarity=0.020 Sum_probs=233.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
..+...+......|+.++|++++.......+. +...+..+...+.+.|++++|..++++.....+. +...+..+...+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQL-PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444444444444444444444444332211 3333455555555555555555555554444322 233344444455
Q ss_pred HccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005161 339 KDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDAC 418 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 418 (711)
...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+... .+...+..+...+...+..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHH
Confidence 55555555555555555442 22333 55555555666666666666666665432 23344444555555556666666
Q ss_pred HHHHHHHhcCCCCCcH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhc-CCCCChh-hHH----HHHHH
Q 005161 419 AVLETMEKQKDIEPDA------YLYCDMLRIYQ-----QCGML---DKLSYLYYKILKS-GITWNQE-LYD----CVINC 478 (711)
Q Consensus 419 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~ 478 (711)
..++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..
T Consensus 171 ~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 66554421 1211 01111111111 11122 5566666666543 1222211 111 11223
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCc----hhHHHHHHHHHHhcCC
Q 005161 479 CARALPIDELSRVFDEMLQHGFT-PNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD----VISYNTIIAAYGQNKN 553 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 553 (711)
+...+++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..+.+ ......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 34557777777777777765421 221 11224556777777888887777776655422 2345556666777788
Q ss_pred HHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 554 LESMSSTVQEMQFDGF-----------SVS---LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 554 ~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
+++|...++.+..... .|+ ...+..+...+...|+.++|..+++++... .+.+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 8888877777765421 112 123455667778888899999988888775 3556677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005161 620 EQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITAL 688 (711)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 688 (711)
..|++++|++.+++..+ +.|+ ...+..++..+...|++++|...++++++ ..|+......+-+.+
T Consensus 405 ~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 405 ARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred hcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 88889999999988887 4566 66677777788888889999999988887 677765544444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-16 Score=166.08 Aligned_cols=448 Identities=12% Similarity=0.072 Sum_probs=240.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccH--hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcH
Q 005161 200 GRAGNYREAKWYYKELKHLGYKPNA--SNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNV 277 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 277 (711)
.+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+.+......++..+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 46777777777777776642 332 222 5566666667777777777766622222223333445566666666666
Q ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhc
Q 005161 278 PRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHIC 357 (711)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 357 (711)
.+++++++..+|. +...+..++..+...++.++|++.++++...++. ...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 6666666666655 4555556666666666666666666666555433 222222222222234443466666666554
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHH
Q 005161 358 DGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLY 437 (711)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 437 (711)
. +.+...+..+..++.+.|-...|.++...-... + +...+..+- .+.|.+..+.... ++..
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~--------~~~~a~~vr~a~~----~~~~--- 259 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE--------RDAAAEQVRMAVL----PTRS--- 259 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------HHHHHHHHhhccc----cccc---
Confidence 3 334445555555555555555555444332211 1 111110000 0000000000000 0000
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhcC-CCCC-hhhH----HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHH
Q 005161 438 CDMLRIYQQCG---MLDKLSYLYYKILKSG-ITWN-QELY----DCVINCCARALPIDELSRVFDEMLQHGFTPNIITLN 508 (711)
Q Consensus 438 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 508 (711)
... -.+.|+.-++.+...- ..|. ...| .-.+-++...++..++++.|+.+...+.+.......
T Consensus 260 --------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 260 --------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred --------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 000 1233333333333311 1111 1111 122234455566666666666666555443444555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC
Q 005161 509 VMLDIYGKAKLFKRVRKLFSMAKKLGL------VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGF-----------SV 571 (711)
Q Consensus 509 ~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~ 571 (711)
.+.++|...+++++|..++..+....+ ++......|..+|...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 566666666666666666666544331 1222235566666666666666666666655210 11
Q ss_pred C--h-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHH
Q 005161 572 S--L-EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYN 647 (711)
Q Consensus 572 ~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 647 (711)
+ - ..+..++..+...|+..+|.+.++++... -|-|......+.+.+...|++.+|...++.... +.|+ ..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHH
Confidence 1 1 12334566677788888888888888765 356777888888888888888888888866665 4565 56677
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005161 648 TLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMI 685 (711)
Q Consensus 648 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 685 (711)
..+.++...|++.+|..+.+.+.+ ..|+......|-
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~ 524 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHH
Confidence 778888888888888888888877 667655444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-16 Score=165.38 Aligned_cols=450 Identities=10% Similarity=-0.018 Sum_probs=269.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
...+.|+++.|+..|+++.+.+|........++..+...|+.++|+..+++...... ........++..+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 346788888888888888888887643444778888888888888888888773221 1333444446677788888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 139 ELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
.++++++.+..+ .++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 888888888753 35667777778888888888888888888774 355555544444443456665688888888876
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh--hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHH
Q 005161 219 GYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS--SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSC 296 (711)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 296 (711)
. +.+...+..+..+..+.|-...|.++..+-.......+ .+-...+....+..... ... ...
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~------------~~~-~~~-- 262 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP------------TRS-ETE-- 262 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc------------ccc-chh--
Confidence 3 22456667777777888877777766655332211111 11111111111111000 000 000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhc-CCCccHh-----hHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHH
Q 005161 297 SILVMAYVKHGLIDDAMKVLGDKRWK-DTVFEDN-----LYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMI 370 (711)
Q Consensus 297 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 370 (711)
+.--.+.|+.-++.+... +..|... ...-.+-++...++..++++.|+.+...+.+....+-..+.
T Consensus 263 --------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 263 --------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred --------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 000123333333333321 1112111 11223344555666666666666666655444445566666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----------CCCcH-
Q 005161 371 DTYSVMGMFTEAEKLYLNLKSSG-----IRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKD----------IEPDA- 434 (711)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~- 434 (711)
++|...+++++|..+|+.+.... ..++......|..+|...+++++|..+++.+.+... ..|+.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 66666677777777766665432 122333345666667777777777777776644221 01221
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 005161 435 --YLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLD 512 (711)
Q Consensus 435 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 512 (711)
..+..++..+...|+..+|.+.++.+.... +-|......+...+...|.+.+|.+.++...... +-+..+....+.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHH
Confidence 233445566677777777777777776554 3466777777777777888888888876665542 344555556666
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCch
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDV 538 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 538 (711)
.+...+++++|..+.+.+....|.+.
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 67777888888888877777776444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-14 Score=131.04 Aligned_cols=448 Identities=11% Similarity=0.069 Sum_probs=186.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...|......-..++++..|..+|++++..+..+...|...+..-.++.....|..+++.....-+..+ ..|...+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHH
Confidence 3334444444434444555555555555554444444555555555555555555555554443222211 112222222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
--..|++..|.++|++-..- .|+...|++.+..=.+-++.+.|..+|++..-. .|++.+|---...-.+.|+...|
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 22335555555555554443 455555555555444455555555555554432 24555554444444445555555
Q ss_pred HHHHHHHHhc-CC-CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh--hHHHHHHHHHHhcCCCCcHHHHH---
Q 005161 209 KWYYKELKHL-GY-KPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS--SILGTLLQAYEKAGRTDNVPRIL--- 281 (711)
Q Consensus 209 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~--- 281 (711)
..+|+.+.+. |- ..+...+.+....-..+..++.|.-+++-.+..-|... .++..+...--+-|+....+...
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 5555544432 10 01122233333333344444555555555544444332 33444444444444433333221
Q ss_pred -----HHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccH-hhHHHHHHHHHccCChhhHHHHHHHHh
Q 005161 282 -----KGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFED-NLYHLLICSCKDSGHLANAVKIYSHMH 355 (711)
Q Consensus 282 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 355 (711)
+..+..+|. |-.+|-..++.-...|+.+...+++++....-+..+. ..|...|-...
T Consensus 307 Rk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi---------------- 369 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI---------------- 369 (677)
T ss_pred hhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH----------------
Confidence 222222222 4444444444444444444444444444332211111 11111110000
Q ss_pred hcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHHcCChHHHHHHHHHHHhcCCCC
Q 005161 356 ICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRM----YVKAGSLKDACAVLETMEKQKDIE 431 (711)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~ 431 (711)
|-.+-.-....+++.+.++|+..++. ++....|+..+--+ -.++.++..|.+++... -|..
T Consensus 370 -----------nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A---IG~c 434 (677)
T KOG1915|consen 370 -----------NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA---IGKC 434 (677)
T ss_pred -----------HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH---hccC
Confidence 00000111334455555555554442 22233333322222 22344455555555443 2334
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCccHHHHHHH
Q 005161 432 PDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHG-FTPNIITLNVM 510 (711)
Q Consensus 432 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 510 (711)
|-..+|...|..-.+.+.+|.+..++++.+..++. +-.+|......-...|+.+.|..+|.-.++.. .......|...
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY 513 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY 513 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 45555555555555555555555555555544322 33344444444444455555555555444321 11122333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcC
Q 005161 511 LDIYGKAKLFKRVRKLFSMAKKLG 534 (711)
Q Consensus 511 ~~~~~~~~~~~~a~~~~~~~~~~~ 534 (711)
|+.-...|.++.|..+++++.+..
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhc
Confidence 333344555555555555554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-16 Score=143.04 Aligned_cols=496 Identities=14% Similarity=0.086 Sum_probs=290.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENW-LVMLNAYSQQGKLEEAELVLVSMREAGFSP----NIVAYNTL 160 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 160 (711)
+...|.+.|..+..+.+|+..|+-+.+....|+...+ ..+...+.+.+.+.+|.+.+...+..-+.. -....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4556677788888888888888887777666665443 234556777788888888877766542111 12345555
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (711)
.-.+.+.|.++.|..-|+...+. .|+..+-..|+-++.--|+.++-.+.|.+|......||..-|.. ...+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~ddp 354 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKDDP 354 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcCCc
Confidence 56677888888888888877664 36666544455555556788888888888877655554432210 00000
Q ss_pred HHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcC--CHHHHHHHHHh
Q 005161 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHG--LIDDAMKVLGD 318 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~ 318 (711)
+. .++.+ ..-+-.+.-+-+.+ +.++++-.-.+
T Consensus 355 ~~--~ll~e--------------------------------------------ai~nd~lk~~ek~~ka~aek~i~ta~k 388 (840)
T KOG2003|consen 355 DD--NLLNE--------------------------------------------AIKNDHLKNMEKENKADAEKAIITAAK 388 (840)
T ss_pred ch--HHHHH--------------------------------------------HHhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 00 00000 00011111111111 12222222222
Q ss_pred hhhcCCCccHhh-HHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 005161 319 KRWKDTVFEDNL-YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD 397 (711)
Q Consensus 319 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 397 (711)
+...-+.|+-.. +...+.....+...+.|.++ -..-...+.+.|+++.|.+++.-..+..-+.-
T Consensus 389 iiapvi~~~fa~g~dwcle~lk~s~~~~la~dl---------------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 389 IIAPVIAPDFAAGCDWCLESLKASQHAELAIDL---------------EINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred HhccccccchhcccHHHHHHHHHhhhhhhhhhh---------------hhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 222222222111 11112211111111111111 01112346788899999988888777644433
Q ss_pred HHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 398 LIAFTVVVRMYVK--AGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCV 475 (711)
Q Consensus 398 ~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (711)
...-+.|...+.- -.++.+|.++-+...... +-+......-.+....+|++++|.+.+++.+..........|+.-
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig 531 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG 531 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3334444333333 235777777666554322 122333222333445678888888888888776544444444433
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLE 555 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (711)
+ .+...|+.++|+..|-++..- +..+...+..+...|....+..+|.+++.+....-|.++.....+...|-+.|+-.
T Consensus 532 l-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 532 L-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred c-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 3 355677888888887766532 12355666667777777888888888888777777778888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIY-GEQGWINEVVGVLTEL 634 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 634 (711)
.|.+.+-+--+. +|-+..+...|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|++.+|..+++..
T Consensus 610 qafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 610 QAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777765554433 466777777777777777778888888877654 577888887777544 4567888888888877
Q ss_pred HHCCCCCChHhHHHHHHHHhccCC
Q 005161 635 KECGLRPDLCSYNTLIKAYGIAGM 658 (711)
Q Consensus 635 ~~~~~~p~~~~~~~l~~~~~~~g~ 658 (711)
... ++-|......|++.+...|.
T Consensus 687 hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 HRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHh-CccchHHHHHHHHHhccccc
Confidence 664 55567777777777776664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-14 Score=129.38 Aligned_cols=488 Identities=11% Similarity=0.081 Sum_probs=362.6
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005161 72 AFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFS 151 (711)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (711)
-|+.-.+.+..+...|....+.-..++++..|..+|+..++.+.. +...|...+..-.+...+..|..++++.+..-+.
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 344444445445567888888888899999999999999987754 7778888999999999999999999999986333
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHH
Q 005161 152 PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLI 231 (711)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 231 (711)
-...|...+..=-..|++..|.++|++..+ ..|+...|++.|..-.+.+..+.|..+|++..- +.|+..+|....
T Consensus 140 -VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikya 214 (677)
T KOG1915|consen 140 -VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYA 214 (677)
T ss_pred -HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHH
Confidence 334455555444567999999999999887 469999999999999999999999999999986 469999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcc-hhHHHHHHHHHHhcC
Q 005161 232 NLHAKYEDEEGAVNTLDDMLNMGCQHS---SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFN-LTSCSILVMAYVKHG 307 (711)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 307 (711)
..-.+.|....+..+++.+++.-.+.. .++.+.+..-.....++.|.-+++-+++.-|... ...|..+...--+.|
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 999999999999999999887544322 5667777777777888888888888887765522 233444444333444
Q ss_pred CHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 005161 308 LIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 308 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
+-....+..-.- -.--++.+.+.+ +.|-.+|...+..-...|+.+...++|+
T Consensus 295 d~~gIEd~Iv~K---------------------------Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 295 DKEGIEDAIVGK---------------------------RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred chhhhHHHHhhh---------------------------hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 433333221100 001133343333 5566677777777777788888888888
Q ss_pred HHHhCCCCCCHH-------HH---HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH----HHcCCHHHH
Q 005161 388 NLKSSGIRLDLI-------AF---TVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIY----QQCGMLDKL 453 (711)
Q Consensus 388 ~~~~~~~~~~~~-------~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a 453 (711)
..+.. ++|-.. +| |..+..-....+++.+.++|+..++. ++....||..+--.| .++.++..|
T Consensus 347 rAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 347 RAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 88775 333221 11 11122223568999999999988663 455566665554444 467899999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 454 SYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
.+++-..+ |..|-..+|...|..-.+.++++....+++..++.+ |.+..+|......-...|+.+.|..+|..+.++
T Consensus 424 RkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 424 RKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 99887765 457788899999999999999999999999999876 668888888888888899999999999998887
Q ss_pred CC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-----hcC-----------CHHHHHHH
Q 005161 534 GL--VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYG-----KEG-----------QMENFKNV 595 (711)
Q Consensus 534 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~ 595 (711)
.. .....|.+.|..-...|.++.|..+|+++.+.. +...+|.++...-. +.| ....|..+
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~i 578 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKI 578 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHH
Confidence 66 355678888888889999999999999998863 44446666554332 233 56689999
Q ss_pred HHHHHH
Q 005161 596 LRRMKE 601 (711)
Q Consensus 596 ~~~~~~ 601 (711)
|+++..
T Consensus 579 ferAn~ 584 (677)
T KOG1915|consen 579 FERANT 584 (677)
T ss_pred HHHHHH
Confidence 998764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-16 Score=139.63 Aligned_cols=280 Identities=11% Similarity=0.103 Sum_probs=209.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HHH-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 005161 406 RMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRI-YQQ-CGMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL 483 (711)
Q Consensus 406 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 483 (711)
--+.+.|+++.|+++++-+.+..+...+. .-+.+-.. |.+ -.++.+|..+-+..+... ..++.....-.+.....|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~sa-aa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASA-AANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHH-HhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 34789999999999999885543322222 22223222 222 336667776666655432 122222222233445679
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 484 PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQE 563 (711)
Q Consensus 484 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 563 (711)
++++|.+.|++.+...-.-....|+. .-.+...|++++|++.|-.+...-..+..+...+...|....++..|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999997643333333333 33467789999999999887766557888888999999999999999999988
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh
Q 005161 564 MQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDL 643 (711)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 643 (711)
.... +|.++...+.|.+.|-+.|+-..|.+..-..-.. ++-+..+...|...|....-+++|+.+|++..- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 8765 6888999999999999999999999887665543 677889999999999999999999999999865 78999
Q ss_pred HhHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcch
Q 005161 644 CSYNTLIKA-YGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDK 693 (711)
Q Consensus 644 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 693 (711)
.-|..++.. +.+.|++.+|.++|+..-.. ++-|......|++.+...|-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999888755 55789999999999998752 55577888888888877763
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-15 Score=135.61 Aligned_cols=461 Identities=14% Similarity=0.093 Sum_probs=232.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHH--ccCCHHHH-HHHHHHHHHc------------
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYK--KSWNVEEA-EFAFNQMRKL------------ 79 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~------------ 79 (711)
+.+=|+++. ....|.+..+.-+|+.|.+.|++.+...-..|++.-+ +..++--| .+.|-.+...
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 334445544 4567788999999999999998888887777776543 33332211 1122222222
Q ss_pred --------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005161 80 --------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFS 151 (711)
Q Consensus 80 --------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (711)
-|..+.++..||.++++-...+.|.+++++......+....+++.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 23334456666666666666666666666655555555555666655443221 124555666666566
Q ss_pred CCHHHHHHHHHHhhccCChHHH----HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCC-
Q 005161 152 PNIVAYNTLMTGYGKVSNMEAA----QRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE-AKWYYKELKH----LGYK- 221 (711)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~- 221 (711)
||..|+|+++.+.++.|+++.| .+++.+|++.|++|...+|..+|..+++.++..+ |..++.+... ..++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 6666666666666666655443 3344555556666666666666666655555432 2222222221 1111
Q ss_pred --c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHH
Q 005161 222 --P-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSI 298 (711)
Q Consensus 222 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 298 (711)
| |...|...+..|.+..|.+-|.++..-+...... +. +.... -....|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~------------------~~--------ig~~~-~~~fYyr~ 403 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW------------------KF--------IGPDQ-HRNFYYRK 403 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------------------hh--------cChHH-HHHHHHHH
Confidence 1 2334455555555555555555544433321100 00 00000 02234455
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCC
Q 005161 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGM 378 (711)
Q Consensus 299 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (711)
+....++....+.-..+++.|.-+-..|+..+...++++....+.++-.-+++..+...|..-+..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-------------- 469 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD-------------- 469 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH--------------
Confidence 666666777777777777777777777777777777777777777777777777776554222211
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHH-HHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-GSLKDA-CAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYL 456 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 456 (711)
-.++++..+......|+...-..+-....+. -++.++ ...-.++ ... .-.....+.++-.+.+.|..++|.++
T Consensus 470 --l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~-r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 470 --LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ-RAQ--DWPATSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred --HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhc--cCChhHHHHHHHHHHHcchHHHHHHH
Confidence 1222333333322222222111111111111 011111 1111222 111 22233344445555666666666666
Q ss_pred HHHHHhcC-CCCChhhHH---HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHH
Q 005161 457 YYKILKSG-ITWNQELYD---CVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKL 526 (711)
Q Consensus 457 ~~~~~~~~-~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 526 (711)
+..+.+.+ -.|-....+ -+++...+.++...|+..++-+...+.+.-...-+.++..|.-.....+++.-
T Consensus 545 l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~ 618 (625)
T KOG4422|consen 545 LGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSN 618 (625)
T ss_pred HHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhh
Confidence 66664433 122222333 44455556666777777777776655443333455555555544444444433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-14 Score=137.78 Aligned_cols=663 Identities=11% Similarity=0.092 Sum_probs=314.5
Q ss_pred hhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC------------------------CCHhhHHHHHHHHHc
Q 005161 7 MSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQ------------------------PNVATFGMLMGLYKK 62 (711)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~------------------------~~~~~~~~l~~~~~~ 62 (711)
+.+|+.||+.+|.++|..||..|+.+.|- +|..|.-...+ |...+|..|..+|..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~ 95 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRI 95 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHh
Confidence 47899999999999999999999999887 66666543333 445566666666666
Q ss_pred cCCHHH---HHHHHHHHH----HcCCCchhHH---------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005161 63 SWNVEE---AEFAFNQMR----KLGLVCESAY---------------SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE 120 (711)
Q Consensus 63 ~g~~~~---A~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (711)
.||+.. .++.+..+. ..+....+.| ...+...+-.|.++.+++++..+...... .
T Consensus 96 hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~-~-- 172 (1088)
T KOG4318|consen 96 HGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN-A-- 172 (1088)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc-c--
Confidence 666443 111111111 1111111111 22223333334444444444332221100 0
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 121 NWLVMLNAYSQ-QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199 (711)
Q Consensus 121 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 199 (711)
+....++-+.. ...+++...+.....+ .|++.+|..++..-...|+++.|..++.+|.+.|+.-+..-|-.|+-+
T Consensus 173 p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 173 PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 00001111111 1112222222222222 477888888888777888888888888888888887777766666654
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHH-----------HHHHHHHH----------------
Q 005161 200 GRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAV-----------NTLDDMLN---------------- 252 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~---------------- 252 (711)
.++..-+..+.+-|.+.|+.|+..|+...+..+..+|....+. .++..+..
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 6777777888888888888888888776666555543321111 01111110
Q ss_pred ---------CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhcc---CCcchhHHHHHHHHHHhcCCHHHHHHHHH--h
Q 005161 253 ---------MGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQH---VLFNLTSCSILVMAYVKHGLIDDAMKVLG--D 318 (711)
Q Consensus 253 ---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~ 318 (711)
.|............-....|+-+..+++...+.... ...++..+..++.-|.+.-+..-...++. .
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~q 406 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQ 406 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111111222222222333455555555554443211 11133344444333322111100000000 0
Q ss_pred hhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHh----hcCC-------CCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 005161 319 KRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMH----ICDG-------KPNLHIMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
....+. +......+..... .-....+.+-+..+. .+.. .+-...-+.++..|.+.-+..+++..-+
T Consensus 407 gls~~l--~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e 483 (1088)
T KOG4318|consen 407 GLSLNL--NSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE 483 (1088)
T ss_pred HHHhhh--chhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000000000000 001111111111110 0000 0111122334444444444444443332
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005161 388 NLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ-KDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT 466 (711)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 466 (711)
.....-+ ...|..++..+......+.|.....++... ..+.-+..-+..+.+.+.+.+....+..++.++.+.-..
T Consensus 484 kye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n 560 (1088)
T KOG4318|consen 484 KYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAEN 560 (1088)
T ss_pred HHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhC
Confidence 2222111 145677777777777777777777766211 112234445667777777777777777777777653322
Q ss_pred CC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 467 WN--QELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTI 544 (711)
Q Consensus 467 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 544 (711)
-+ ..++-.+++.....|+.+...++++-+...|+..+ ..++....+.++...+.+.++...+...+.+.....+
T Consensus 561 ~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~l 636 (1088)
T KOG4318|consen 561 EPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGL 636 (1088)
T ss_pred CchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHH
Confidence 11 33444555666667777777777777666654432 2233334445555555555554444433333222222
Q ss_pred HHH---------------------HHhcCCHHHHHHHHHHH---HHC--------C-CCC---------ChhhHHHHHHH
Q 005161 545 IAA---------------------YGQNKNLESMSSTVQEM---QFD--------G-FSV---------SLEAYNSMLDA 582 (711)
Q Consensus 545 ~~~---------------------~~~~~~~~~a~~~~~~~---~~~--------~-~~~---------~~~~~~~l~~~ 582 (711)
.+. |.+.|+...+.++.+.= .+. | +.| +......++..
T Consensus 637 crlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~s 716 (1088)
T KOG4318|consen 637 CRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQS 716 (1088)
T ss_pred HHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHH
Confidence 222 33333333333222110 000 0 000 11223346778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHCC-CCC-ChHhHHHHHHHHhccC
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG---WINEVVGVLTELKECG-LRP-DLCSYNTLIKAYGIAG 657 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 657 (711)
|.+.|+++.|..+|.++. +.|+..+...|...+.+.. |..++....++..+.. ..| +..-|.-.+...+...
T Consensus 717 y~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~ 793 (1088)
T KOG4318|consen 717 YLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTE 793 (1088)
T ss_pred HHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHH
Confidence 888888888888888887 5667666666666655443 3344444444444321 111 1222333233333444
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcc
Q 005161 658 MVEDAVGLVKEMRENGIEPDKITYTNMITALQRND 692 (711)
Q Consensus 658 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 692 (711)
.-+.|.+.+.+..+.....+..++..+++++.+..
T Consensus 794 qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 794 QKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 44567777777776544345566666666666554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-13 Score=123.44 Aligned_cols=389 Identities=12% Similarity=0.154 Sum_probs=259.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMID 371 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (711)
...++..+|.++++-...+.|.+++++......+.+..+||.+|.+..-.. ..++..+|......||..|||++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 567899999999999999999999999998888889999999997654332 2788999999999999999999999
Q ss_pred HHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhc---CCC----CCcHHHHHH
Q 005161 372 TYSVMGMFTE----AEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKD-ACAVLETMEKQ---KDI----EPDAYLYCD 439 (711)
Q Consensus 372 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~---~~~----~~~~~~~~~ 439 (711)
+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++... ..+ +.+...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998765 56788889999999999999999999998887644 55555555322 112 224566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSG----ITWN---QELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLD 512 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 512 (711)
-+..|....+.+.|.++-..+.... +.|+ ..-|..+....++....+.....|+.++-+-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8888888888888877765543321 2222 22355666777788888888888888887777788888888888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCH
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLE---AYNSMLDAYGKEGQM 589 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 589 (711)
+..-.+.++-..+++..+...+.. + +-+--++++..+.+....|+.. -+.....-|+ ..-.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght----~-----------r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~ 505 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT----F-----------RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA-ADIK 505 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh----h-----------hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHH
Confidence 888888888888888776664321 1 1111223344444433333322 2222222111 1111
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-CCChHhHH---HHHHHHhccCChHHHHHH
Q 005161 590 ENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL-RPDLCSYN---TLIKAYGIAGMVEDAVGL 665 (711)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~---~l~~~~~~~g~~~~A~~~ 665 (711)
+.....-.++... .-.....+.+.-.+.+.|..++|.++|.-+.+.+- -|-....| -++......+.+..|..+
T Consensus 506 e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 1222222333333 33445566777778889999999999998865432 23333344 556677788889999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHH
Q 005161 666 VKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSL 702 (711)
Q Consensus 666 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 702 (711)
++-|...++..-...-..+...|.-.....+|+.-+.
T Consensus 584 lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l~ 620 (625)
T KOG4422|consen 584 LQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNLT 620 (625)
T ss_pred HHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhhh
Confidence 9998764432222233344444444434444444333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-14 Score=127.99 Aligned_cols=422 Identities=14% Similarity=0.068 Sum_probs=222.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHh
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEK 270 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (711)
+-....-|.++|.+++|.++|.+.++. .|+ +..|.....+|...|+++.+.+..-..++..|...-.+.+-..++..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344566778899999999999999885 667 77788888899999999999999999998888877788888888888
Q ss_pred cCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHH
Q 005161 271 AGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKI 350 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 350 (711)
.|++++|+.=+ +-..+...+....-.--+.+++.+.. ..-
T Consensus 196 lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a---------------------------~~k 235 (606)
T KOG0547|consen 196 LGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQA---------------------------MKK 235 (606)
T ss_pred hccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHH---------------------------HHH
Confidence 88888776321 22233333333222222233322211 000
Q ss_pred HHHHhh-c--CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 005161 351 YSHMHI-C--DGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-GSLKDACAVLETMEK 426 (711)
Q Consensus 351 ~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 426 (711)
.++-.+ . .+-|......+....+...-.. .+...+...|...-..+-..+... ..+..|.+.+.+-..
T Consensus 236 a~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~ 307 (606)
T KOG0547|consen 236 AKEKLKENRPPVLPSATFIASYFGSFHADPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL 307 (606)
T ss_pred HHHhhcccCCCCCCcHHHHHHHHhhccccccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh
Confidence 000000 0 0112222222221111100000 000000000000000000000000 011111111111100
Q ss_pred cCCCCC-----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 427 QKDIEP-----D------AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEM 495 (711)
Q Consensus 427 ~~~~~~-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 495 (711)
.....+ | ..+.......+.-.|+.-.+..-|+..+.....++. .|-.+...|....+.++....|...
T Consensus 308 ~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 308 GSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred hhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHH
Confidence 000000 0 111111112233455666666666666655433322 1444455566666666666666666
Q ss_pred HhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 005161 496 LQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEA 575 (711)
Q Consensus 496 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 575 (711)
.+.+ +.++.+|..-.+.+.-.+++++|..-|+......|.+...|..+.-+..+.+.++++...|++..+. +|..+.+
T Consensus 387 ~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Ev 464 (606)
T KOG0547|consen 387 EDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEV 464 (606)
T ss_pred HhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchH
Confidence 6543 3344455555555555666777777777777666666666666666666666777777777776655 4666667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHH--HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHh
Q 005161 576 YNSMLDAYGKEGQMENFKNVLRRMKETSCTFD-------HYT--YNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCS 645 (711)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 645 (711)
|+.....+...++++.|.+.++...+. .|+ ... --+++ .+.-.+|++.|..++.+.++ +.|. ...
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A 539 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQA 539 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHH
Confidence 777777777777777777777766652 222 111 11111 11122667777777777766 3454 556
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
|..|...-...|+.++|+++|++...
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777777776553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-10 Score=107.74 Aligned_cols=562 Identities=13% Similarity=0.073 Sum_probs=305.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
+..|...+..+.++|++-.-...|++.+..-|.. ...|...+......+-++-+..++++.++.. +....-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHH
Confidence 4677888888899999999999999998877654 5689999999999999999999999998854 334666788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHhhccCChHH---HHHHHHHHHhcCCCCC--hhhHHHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAG------FSPNIVAYNTLMTGYGKVSNMEA---AQRLFLSIKDVGLEPD--ETTYRSMI 196 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~li 196 (711)
.+++.+++++|.+.+..++... .+.+...|..+....++..+.-. ...++..+... -+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 8899999999999998887532 24566777777776665543222 22333333332 234 34589999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc
Q 005161 197 EGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN 276 (711)
Q Consensus 197 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (711)
.-|++.|.+++|.++|++.... .....-|..+...|+......-+..+= ...+.+...... -+++-
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-----------~dl~~ 321 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-----------VDLEL 321 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-----------hhHHH
Confidence 9999999999999999998875 234445666666665433221111111 010111111100 00011
Q ss_pred HHHHHHHhh------------hccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc-CC----CccHhhHHHHHHHHH
Q 005161 277 VPRILKGSL------------YQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK-DT----VFEDNLYHLLICSCK 339 (711)
Q Consensus 277 a~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~----~~~~~~~~~l~~~~~ 339 (711)
...-|+..+ .+++. ++..|..-+..+ .|+..+-...+.+.... ++ ..-...|..+...|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~-nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPH-NVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCc-cHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 111122221 22222 444444433322 34444444444443322 11 001123444444444
Q ss_pred ccCChhhHHHHHHHHhhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 005161 340 DSGHLANAVKIYSHMHICDGKPN---LHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKD 416 (711)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (711)
.+|+++.|..+|++..+...+.- ..+|..-...-.+..+++.|+++.+..... |.... ..+...+.+.+
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ 470 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQ 470 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHH
Confidence 45555555555554444332211 122222223333344444444444433332 11100 01111111100
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 417 ACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496 (711)
Q Consensus 417 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 496 (711)
+ .+ ..+...|+..++.--..|-++....+++++++..+.....+.| ....+....-++++.+++++-+
T Consensus 471 ~-rl----------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 471 A-RL----------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred H-HH----------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCC
Confidence 0 00 0133456666666666777777788888887766542222222 2222334455667777776655
Q ss_pred hCCCCcc-HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005161 497 QHGFTPN-IITLNVMLDIYGK---AKLFKRVRKLFSMAKKLGLVDVI--SYNTIIAAYGQNKNLESMSSTVQEMQFDGFS 570 (711)
Q Consensus 497 ~~~~~~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 570 (711)
..--.|+ ...|+..+.-+.+ ...++.|..+|+++.+..||... .|-.....--+.|-...|++++++.... ++
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~ 617 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VK 617 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC
Confidence 4322333 2345554443332 34578888888888886554322 2222222334467777888888886543 33
Q ss_pred CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHhhcCCHHHHHHHHHHHHHCCCCCC--h
Q 005161 571 VS--LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI---MIDIYGEQGWINEVVGVLTELKECGLRPD--L 643 (711)
Q Consensus 571 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 643 (711)
+. ...|+..|.--...=-+.....++++.++. -|+...-.. ..+.-++.|.++.|..++..-.+. +.|. .
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~ 694 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCCh
Confidence 32 345666655444333445566777777763 455443222 223446678888888888766653 3443 5
Q ss_pred HhHHHHHHHHhccCC
Q 005161 644 CSYNTLIKAYGIAGM 658 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~ 658 (711)
..|.+.=.--.+.|+
T Consensus 695 ~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 556666666667777
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-10 Score=105.35 Aligned_cols=312 Identities=13% Similarity=0.097 Sum_probs=171.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHH
Q 005161 376 MGMFTEAEKLYLNLKSSGIRL------DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEP---DAYLYCDMLRIYQQ 446 (711)
Q Consensus 376 ~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 446 (711)
.|+..+-...|.++... +.| -...|..+...|-..|+++.|..+|++..+.. .+. -..+|..-...-.+
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHh
Confidence 45566666666666553 112 12456777777888888888888888774321 111 13345555555556
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-----------------ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 005161 447 CGMLDKLSYLYYKILKSGITW-----------------NQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNV 509 (711)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 509 (711)
..+++.|.++++........| +..+|...++.-...|-++....+++.+.+..+. ++...-.
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 677777777777665443221 1224444555555566677777777777765433 2222222
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCC-C-chhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHH
Q 005161 510 MLDIYGKAKLFKRVRKLFSMAKKLGL-V-DVISYNTIIAAYGQ---NKNLESMSSTVQEMQFDGFSVSLEA--YNSMLDA 582 (711)
Q Consensus 510 l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 582 (711)
....+-...-++++.+.+++-....+ | -...|+..+.-+.+ ...++.|..+|++..+ |+||...- |......
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 22233445556777777765555444 3 23455555554433 3356777777777776 55554322 1122222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHH---HHHHHhccC
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFDH--YTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNT---LIKAYGIAG 657 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g 657 (711)
-...|-...|..+++++... +++.. ..||..|.--...=-+.....+|++.++. -|+...-.. ....-.+.|
T Consensus 596 EEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklG 672 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLG 672 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhh
Confidence 23446666777777776543 33322 35666664333333344566777777773 455433222 233445677
Q ss_pred ChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhcchHH
Q 005161 658 MVEDAVGLVKEMRENGIEPD--KITYTNMITALQRNDKFL 695 (711)
Q Consensus 658 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~ 695 (711)
..+.|..+|....+- ..|. ...|.+.-.-=.+.|+-+
T Consensus 673 EidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 673 EIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence 888888887776653 4453 345666655556777733
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-12 Score=113.77 Aligned_cols=294 Identities=14% Similarity=0.066 Sum_probs=205.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHcCC
Q 005161 371 DTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIE-PDAYLYCDMLRIYQQCGM 449 (711)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 449 (711)
.++....+.+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++.+..+.. .|..+|+.++-.- ..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence 4455555777777777777777776665555555556666778888888888886654332 2455666554332 211
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005161 450 LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 529 (711)
.. +..+.+-...--+--+.|...+.+-|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|.+-+..
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1111111111112345567777778888888888888888888765 44566677777788888888888888888
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY 609 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (711)
+.+.+|.|...|-.+.++|.-.+-+.-|+-+|++..... |.|...|..|.++|.+.++.++|++.|.+....| ..+..
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 888888888888888888888888888888888888764 6778888888888888888888988888888764 33556
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKE----CGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.+..|...|-+.++.++|...|++-++ .|...+ ..+.-.|..-+.+.+++++|.........
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 788888888888888888888887765 222222 22333355556677888887776666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-13 Score=122.59 Aligned_cols=417 Identities=12% Similarity=0.041 Sum_probs=233.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPN-VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
+-+.-+-|.++|++++|.++|.++++. .|+ +.-|.....+|...|+++...+--.+.++.+|....+++.-..++-+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 334456688999999999999999986 577 77788888899999999999999999999999888899999999999
Q ss_pred cCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHhhccCChHH
Q 005161 97 LSLYEKAEEVIRLI-REDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE-AG--FSPNIVAYNTLMTGYGKVSNMEA 172 (711)
Q Consensus 97 ~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~ 172 (711)
.|++.+|+.=..-. +..++. |..+- .++.-..+. .|....++-.+ .+ +-|+.....+....+-.. +.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~- 266 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NASIE-PMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK- 266 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc-
Confidence 99999987543322 122222 22121 122211111 12222222222 22 234444444333332110 00
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHH--hc---CCHHHHHHHHHHHHhc---CCCcc---------HhhHHHHHHHHH
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWG--RA---GNYREAKWYYKELKHL---GYKPN---------ASNLYTLINLHA 235 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~---g~~~~A~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~ 235 (711)
..+. .+.......+..++- .. ..+.+|.+.+.+-... ....+ ..++....-.+.
T Consensus 267 -----~~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 267 -----PLFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred -----cccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0000 011111111111111 01 1233343333322111 00111 112222222344
Q ss_pred cCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 236 KYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKV 315 (711)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 315 (711)
-.|+.-++...|+..++..+.+...|..+...|...++.++-.+.|..+.+.++. |+.+|..-..++.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 5677778888888888887777777777777777777777777777777777766 666676666666667777777777
Q ss_pred HHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 005161 316 LGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIR 395 (711)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 395 (711)
|++....++. +...|..+..+..+.+.++.++..|++..+. ++..+..|+.....+..+++++.|.+.|+..++....
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 7776655443 3334555555555666677777777766654 3445566666666667777777777777666654211
Q ss_pred -----CCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005161 396 -----LDLIA--FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKI 460 (711)
Q Consensus 396 -----~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (711)
.+... -..++..-. .+++..|+.+++...+.. +.....|..|...-.+.|+.++|+++|++.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11111 111111111 255555555555553321 122334555555555555555555555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-13 Score=130.97 Aligned_cols=553 Identities=11% Similarity=0.079 Sum_probs=286.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 105 EVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34555667889999999999999999999999998 8888888777888889999999988888877776
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHH
Q 005161 185 LEPDETTYRSMIEGWGRAGNYREAKWYYKE-LKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGT 263 (711)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 263 (711)
.|.+.||..|..+|.+.|+... ++..++ |.. +...+...|.......++..+. ..+...+....
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES------------INQSFSDHGVGSPERWFLMKIH-CCPHSLPDAEN 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcc-cCcccchhHHH
Confidence 4888999999999999998766 222222 221 2222222332222222221111 01111122333
Q ss_pred HHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCC
Q 005161 264 LLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGH 343 (711)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (711)
.+......|.++.+.+++..+...... .+... +++-..... ....+++.......-.|++.++..++.+-..+|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 344444445555555555432211100 00000 122221111 1222222222222125777788888888888888
Q ss_pred hhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005161 344 LANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET 423 (711)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 423 (711)
.+.|..++..|.+.|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+..
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---- 292 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---- 292 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc----
Confidence 88888888888888888888777777644 77778888888888888888888888887777776544221111
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHcC-----CH-----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 005161 424 MEKQKDIEPDAYLYCDMLRIYQQCG-----ML-----DKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD 493 (711)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 493 (711)
..+....++.-+..-.-.| +. .-....+++..-.|......+|....... .+|.-+++.++-.
T Consensus 293 ------~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg 365 (1088)
T KOG4318|consen 293 ------GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVG 365 (1088)
T ss_pred ------ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHh
Confidence 1122222222222222222 11 11222222222234333334444333322 2566666666666
Q ss_pred HHHhCCC--C-ccHHHHHHHHHHHhccCcHHHHHHHHH--HHHHcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHH--
Q 005161 494 EMLQHGF--T-PNIITLNVMLDIYGKAKLFKRVRKLFS--MAKKLGL--VDVISYNTIIAAYGQNKNLESMSSTVQEM-- 564 (711)
Q Consensus 494 ~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-- 564 (711)
.+..... . .+...+..++.-|.+.-+..-...++. +..+... .+..-..-++.-. ++..+..-+..+
T Consensus 366 ~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l----rkns~lr~lv~Lss 441 (1088)
T KOG4318|consen 366 QLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL----RKNSFLRQLVGLSS 441 (1088)
T ss_pred hhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh----CcchHHHHHhhhhH
Confidence 5553211 1 122223333332222111000000000 1111100 0000000000000 111111111111
Q ss_pred ---HHCCC------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 565 ---QFDGF------SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 565 ---~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
.+... .+-...-+.++..++..-+..+++..-+.....-+. ..|..|++-+......+.|..+.++..
T Consensus 442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 11000 011122334455555555555555544444432111 567777777777777777777777765
Q ss_pred HC--CCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 636 EC--GLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENG-IEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 636 ~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
.. .+..|..-+..+...+.+.+....+..+++++.+.- ..|+ ..+.-.+.+.....|+.+.-.+..+-+...|+
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 42 233445556777777777777777777777776521 1222 23344455555666666666666666555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-10 Score=108.46 Aligned_cols=462 Identities=14% Similarity=0.056 Sum_probs=224.1
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
..+.+...+.+.+.+++. .+....+.....-.+...|+.++|........+.++.+...|..++-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 444555555555555552 2333344443333445556666666666666655555555666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC-C
Q 005161 107 IRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG-L 185 (711)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 185 (711)
|+..+..+.. |...+.-+.-.-++.|+++.......++.+.. +.....|...+.++.-.|++..|..+.++..+.. -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6665554433 44455444444445556665555555555542 2233445555555555566666665555554432 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHH
Q 005161 186 EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLL 265 (711)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 265 (711)
.|+...+.-....+-+ .......|..+.|.+.+......-.+.......-+
T Consensus 176 ~~s~~~~e~se~~Ly~-----------------------------n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQ-----------------------------NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred CCCHHHHHHHHHHHHH-----------------------------HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence 2333333222111110 11222333333333333333222222223333344
Q ss_pred HHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHH-HHHHhhhhcCCCccHhhHHHHHHHHHccCC-
Q 005161 266 QAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM-KVLGDKRWKDTVFEDNLYHLLICSCKDSGH- 343 (711)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 343 (711)
..+.+.+++++|..++...+..+|. |...|-.+..++.+..+..++. .+|....+.-+.. .....+-........
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~--e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH--ECPRRLPLSVLNGEEL 303 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc--ccchhccHHHhCcchh
Confidence 4555555666666666655555443 3344444444443222222232 4444433322110 000000001111112
Q ss_pred hhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC----------CCCCHHHHHH--HHHH
Q 005161 344 LANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS----SG----------IRLDLIAFTV--VVRM 407 (711)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~~~--l~~~ 407 (711)
.+..-.++..+++.|+++- +..+...|-.....+-..++...+.. .| -+|....|+. ++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 2233344555566665543 22232222221111111111111111 10 1455555544 4566
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 005161 408 YVKAGSLKDACAVLETMEKQKDIEPD-AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPID 486 (711)
Q Consensus 408 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 486 (711)
+-+.|+++.|...++....+ .|+ ...|..-.+.+...|+++.|..++++..+.. .+|...-..-.....+.++.+
T Consensus 381 ~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 77788888888888877544 344 3345555677788888888888888877765 234444445556666778888
Q ss_pred HHHHHHHHHHhCCCCccHH--------HHHHH--HHHHhccCcHHHHHHHHHHHHH
Q 005161 487 ELSRVFDEMLQHGFTPNII--------TLNVM--LDIYGKAKLFKRVRKLFSMAKK 532 (711)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 532 (711)
+|.++....-+.|. +.. +|-.+ ..+|.+.|++..|++-|..+.+
T Consensus 457 eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 88888887776653 111 11111 3456666777777666655544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-13 Score=134.19 Aligned_cols=289 Identities=12% Similarity=0.002 Sum_probs=172.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 141 (711)
..|+++.|++.+.+..+..+.+...+.....++.+.|+++.|.+.+.+..+..+.+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 57888888888888877776665666666777788888888888888876654333323333446677778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHH-HHHH---HHHhcCCHHHHHHHHHHHHh
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYR-SMIE---GWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~---~~~~~g~~~~A~~~~~~~~~ 217 (711)
++.+.+.. |.++.++..+...+...|+++.|.+.++.+.+.++. +...+. .-.. +....+..+++.+.+..+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888775 346667777788888888888888888888876542 222221 1111 11222333333344444444
Q ss_pred cCC---CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHH--HhcCCCCcHHHHHHHhhhccCCcc
Q 005161 218 LGY---KPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAY--EKAGRTDNVPRILKGSLYQHVLFN 292 (711)
Q Consensus 218 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~ 292 (711)
... +.+...+..+...+...|+.+.|...+++..+..+++......++..+ ...++.+.+.+.++.....+|. |
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 321 125566666777777777777777777777776666552211111211 2234445555566555555444 4
Q ss_pred h--hHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHH
Q 005161 293 L--TSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSH 353 (711)
Q Consensus 293 ~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 353 (711)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 445556666666666666666665433333334444444555555555555555555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-11 Score=104.63 Aligned_cols=256 Identities=9% Similarity=0.082 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH-----HcCCHHHHH
Q 005161 380 TEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQ-----QCGMLDKLS 454 (711)
Q Consensus 380 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~ 454 (711)
+.|++++-.+.+. .| ..-..++--|.+.+++++|..+.+++ .+..|-.+....+..+-. ......-|.
T Consensus 271 EgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 271 EGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred ccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 4455555444432 12 22233444455666666666666655 222343333333332211 111233455
Q ss_pred HHHHHHHhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 455 YLYYKILKSGITWNQE-LYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
..|+..-.++...|.. --..+.+++.-..++++++..+..+...-...|...+ .+.++++..|++.+|+++|-++...
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 5555444444333321 1223334444455667777766666654333344333 3566777777777777777766655
Q ss_pred CCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 534 GLVDVISYNT-IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEA-YNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTY 611 (711)
Q Consensus 534 ~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (711)
...+..+|.+ +.++|.+.+.++.|+.++-.+.. +.+... ...+..-|.+++.+--|.+.|+.+.. ..|++.-|
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 5555555544 45566777777777666544321 222222 23334556777777777777777765 35666655
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccC
Q 005161 612 NIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAG 657 (711)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 657 (711)
. |+--...-+|..+....-.|- .....-++......+
T Consensus 498 e---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~ 535 (557)
T KOG3785|consen 498 E---------GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKP 535 (557)
T ss_pred C---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCC
Confidence 3 333344445555554333333 233444444444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-11 Score=107.90 Aligned_cols=456 Identities=10% Similarity=-0.014 Sum_probs=257.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNY 205 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 205 (711)
+.-+....++..|..+++--...+-+....+-..+..++.+.|++++|...|..+.... .++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33444566777777766655543322222333344556677788888888887766643 46666676676666677777
Q ss_pred HHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 206 REAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
.+|..+-....+ ++-....+.+...+.++-++.....+.+.... +-..
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~----EdqL----------------------- 155 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL----EDQL----------------------- 155 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----HHHH-----------------------
Confidence 777776655432 23333444555556666655555544443211 1112
Q ss_pred hccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHH-HHHHHccCChhhHHHHHHHHhhcCCCCcHH
Q 005161 286 YQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLL-ICSCKDSGHLANAVKIYSHMHICDGKPNLH 364 (711)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 364 (711)
+|.....-.-.+++|++++.++...++ +-...+.- .-+|.+..-++-+.+++.-.++. ++.++.
T Consensus 156 ------------SLAsvhYmR~HYQeAIdvYkrvL~dn~--ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSti 220 (557)
T KOG3785|consen 156 ------------SLASVHYMRMHYQEAIDVYKRVLQDNP--EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTI 220 (557)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHhcCh--hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHH
Confidence 222222223345555555555544332 12223332 23455666666666666665554 233444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCCCcHHHHHH
Q 005161 365 IMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-----GSLKDACAVLETMEKQKDIEPDAYLYCD 439 (711)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 439 (711)
+.|.......+.=.-..|..-...+...+-. . | ..+.-+++. ..-+.|++++-.+.+. -|.. -..
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEA--RlN 290 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEA--RLN 290 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHh--hhh
Confidence 4554444444433333344444444443211 1 1 122223333 3457888888776443 3332 334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-----HccCCHHHHHHHHHHHHhCCCCccH-HHHHHHHHH
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCC-----ARALPIDELSRVFDEMLQHGFTPNI-ITLNVMLDI 513 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 513 (711)
++--|.+.+++.+|..+.+++... .|.......+..+. ......+-|.+.|+..-..+..-|+ .--.++...
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 556688999999999988776422 33333333333221 1122345566777665555433332 223344555
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFK 593 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (711)
+.-..++++.+-.+..+..-...|...--.+.++++..|++.+|.++|-.+....++.+..-...+.++|.+++.++.|+
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 56667788888888888877776666666788999999999999999988765544434334455667888999998887
Q ss_pred HHHHHHHHcCCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 005161 594 NVLRRMKETSCTFDHYTYNIM-IDIYGEQGWINEVVGVLTELKECGLRPDLCSY 646 (711)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 646 (711)
.++-++. -+.+..+.-.+ .+-|.+.+.+=-|-+.|+.+.. ..|++..|
T Consensus 449 ~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 449 DMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 7665543 23344443333 4678888888888888887766 46776655
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-13 Score=131.82 Aligned_cols=297 Identities=12% Similarity=-0.023 Sum_probs=222.6
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHhHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch-hHHHHHHH
Q 005161 17 LFNTLIYACN--KRGCVELGAKWFHMMLECDVQPNVA-TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE-SAYSAMIT 92 (711)
Q Consensus 17 ~~~~~l~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~ 92 (711)
....+.++.. ..|++..|.+.+....+.. |+.. .+.....+..+.|+.+.|.+.+..+.+..|.+. ........
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 3444555544 6899999999999887753 4433 334446677889999999999999988777654 34555689
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHH---hhccC
Q 005161 93 IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNT-LMTG---YGKVS 168 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~~ 168 (711)
.+...|+++.|...++.+.+..+. +..++..+...+.+.|++++|.+.+..+.+.+.. +...+.. -..+ ....+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765 6778889999999999999999999999998654 3332321 1111 12222
Q ss_pred ChHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh--H-HHHHHHHHcCCCHHH
Q 005161 169 NMEAAQRLFLSIKDVGL---EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN--L-YTLINLHAKYEDEEG 242 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~ 242 (711)
..+...+.+..+.+..+ +.+...+..++..+...|++++|.+.+++..+.. |+... + ..........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence 23333334444443321 1377888899999999999999999999999863 33331 1 112222344578899
Q ss_pred HHHHHHHHHHCCCCCh--hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 243 AVNTLDDMLNMGCQHS--SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 243 a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
+...++...+..|.+. .....++..+.+.|++++|.+.|+.+......|+...+..+...+.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999988 8888999999999999999999995444334567777889999999999999999998864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=142.81 Aligned_cols=260 Identities=18% Similarity=0.147 Sum_probs=81.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECD-VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS 98 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (711)
.+...+.+.|+++.|++++....... .+.+...|..+..+....++++.|...++++...++.....+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44555666677777777665444433 233333344444455556667777777777666665555555555555 5666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG-FSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
++++|.++++...+.. +++..+...+..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777766666544432 344445556666666677777666666655432 2345566666666666667777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
++..+..+ .|....+.++..++..|+.+++..+++...... ..|+..+..+..++...|+.++|...+++..+..+..
T Consensus 170 ~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 66666432 235556666666666666666666666655542 3344455556666666666666666666666666655
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHh
Q 005161 258 SSILGTLLQAYEKAGRTDNVPRILKGS 284 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 284 (711)
..+...++..+...|+.++|..+.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555556666666666666665555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-13 Score=129.20 Aligned_cols=221 Identities=11% Similarity=0.029 Sum_probs=109.6
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------hhHHHHHHHHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNA-------SNLYTLINLHA 235 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 235 (711)
.+...|+++.|...++++.+..+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443321 22333334444444444444444444444433222111 11222222222
Q ss_pred cCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 236 KYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKV 315 (711)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 315 (711)
...+.+...++++.+.+..+........++..+...|+.+.|.+++++.....+. .. ..++......++.+++++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~--~~--l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD--ER--LVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--HH--HHHHHhhccCCChHHHHHH
Confidence 2333344444444444333334455555555555555555555555555553222 21 1122222334666666666
Q ss_pred HHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 316 LGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS 391 (711)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 391 (711)
++...+..+. +...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 317 ~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666555443 4445556666666667777777777666654 46666666777777777777777777766543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-13 Score=114.27 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=169.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHhhccCCh
Q 005161 97 LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIV------AYNTLMTGYGKVSNM 170 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~ 170 (711)
.++.++|.++|.+|.+.++. +..+-..+.+.|.+.|..|+|.++++.+.++ ||.. ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 35677777777777775543 4455566677777777777777777777764 3322 223344445555555
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
+.|+.+|..+.+.+. --......|+..|-...++++|.+.-+++...+-++...- +.
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IA------------------- 180 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IA------------------- 180 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HH-------------------
Confidence 555555555554221 1222334444445455555555555554444432222110 00
Q ss_pred HHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhh
Q 005161 251 LNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL 330 (711)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 330 (711)
.++-.++..+....+++.|...++++...++. .+.+--.+.+.+...|+++.|.+.++.+.+.++..-+.+
T Consensus 181 --------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 181 --------QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 23344455555556666666666666666555 556666777788888888888888888888877766777
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005161 331 YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK 410 (711)
Q Consensus 331 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (711)
...|..+|.+.|+.++...++..+.+.. +....-..+...-....-.+.|...+.+-..+ .|+...+..++.....
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 7777888888888888888887776653 33333333333333444455555555444443 5777777777776554
Q ss_pred c---CChHHHHHHHHHHH
Q 005161 411 A---GSLKDACAVLETME 425 (711)
Q Consensus 411 ~---~~~~~A~~~~~~~~ 425 (711)
. |...+-+..++.|.
T Consensus 328 daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 328 DAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cccccchhhhHHHHHHHH
Confidence 3 33455555555553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-12 Score=127.47 Aligned_cols=285 Identities=11% Similarity=0.029 Sum_probs=171.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
.|+++.|++.+....+....+...+........+.|+++.|.+.+.++.+..+.+...........+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57777777666665554322222333334444666777777777777665443322222223355666677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 143 VSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE-------TTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
+.+.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 7776664 335666666667777777777777777777665443222 12333333333334444455555544
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
.+. .+.++.....+...+...|+.++|...+++..+..+.+. ...+...+..++.+++.+..+.....+|. |...
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~---l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l 330 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER---LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLL 330 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH---HHHHHhhccCCChHHHHHHHHHHHhhCCC-CHHH
Confidence 332 233555666667777777777777777777766433221 11222233446677777777777777665 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHh
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMH 355 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 355 (711)
+..+...+.+.+++++|.+.|+...... |+...+..+...+.+.|+.++|.+++++-.
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777888888888888887776553 566666777777778888888888777664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=140.65 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
+..++..+...++++++..+++.+... ..+.+...|..+...+.+.|+.++|.+.+++.++.. +.|......++..+.
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLI 191 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 333344444444444444444443322 122344444445555555555555555555555431 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHHHH
Q 005161 620 EQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLEAI 698 (711)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~ 698 (711)
..|+.+++.++++...+.. +.|+..+..+..+|...|++++|+..+++..+ ..| |+.+...+..++...|+.++|.
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT---------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 5555555555555544421 23344445555555555555555555555544 333 3444455555555555555555
Q ss_pred HHHHHH
Q 005161 699 KWSLWM 704 (711)
Q Consensus 699 ~~~~~m 704 (711)
++++++
T Consensus 269 ~~~~~~ 274 (280)
T PF13429_consen 269 RLRRQA 274 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-11 Score=112.33 Aligned_cols=286 Identities=10% Similarity=-0.009 Sum_probs=198.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 396 LDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCV 475 (711)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (711)
-+......-..-+....++.+..++.+.+.+..+ +....+..-|.++...|+..+...+=.++.+.- +-.+.+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3455555566666677788888888877765543 334444455557777777776666666666553 3355667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLE 555 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (711)
..-|...|+..+|.+.|.+....+ +.=...|-.....|+-.|..++|...+..+.+.-+.....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 777777788888888887776532 1123456666777788888888888888777766644444445566677788888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET------SCTFDHYTYNIMIDIYGEQGWINEVVG 629 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (711)
.|.++|.+.... .|.|+...+-+.-.....+.+.+|..+|+..+.. .......+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 888888887765 3666777777777777778888888888876621 011244567888888888888888888
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005161 630 VLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQ 689 (711)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 689 (711)
.+++.+.. .+.+..++.++.-+|...|+++.|++.|.+..- +.|+..+...++..+.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 88888874 244578888888888888888888888888876 7887766555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-11 Score=111.45 Aligned_cols=286 Identities=13% Similarity=0.042 Sum_probs=206.3
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHH
Q 005161 360 KPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCD 439 (711)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 439 (711)
..+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.. +....+|-.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 3445555556666777788888888888887763 4455555556667777777766666666665543 445667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCc
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKL 519 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 519 (711)
+.--|...|..++|.+.|.+....+.. -...|-.+...++-.+..+.|+..+....+.- +-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 777777788888888888877655432 23456777778888888888888877766531 1111111222334777888
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 520 FKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD----G--FSVSLEAYNSMLDAYGKEGQMENFK 593 (711)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (711)
.+-|.++|.++....|.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999999988888888888888888888888888898888876632 1 1113456788889999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 005161 594 NVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAY 653 (711)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 653 (711)
..+++.+.. .+.+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..+
T Consensus 476 ~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999998876 466888899999999999999999999999886 678866555555433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-13 Score=129.63 Aligned_cols=289 Identities=15% Similarity=0.098 Sum_probs=171.0
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
+.++|...|.+++.+.+........+.++|...+++++|..+|+.+.+..+. -+.+.|...+-.+-+ .++. --+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v~L-s~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EVAL-SYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hHHH-HHHH
Confidence 4455666666655554444444455566666666666666666666553311 133444444432211 1110 1111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 005161 143 VSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP 222 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 222 (711)
+.++... +..+.+|-.+..+|+-+++.+.|.+.|++..+.++ ..+.+|+.+..-+.....++.|...|+..+.....
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 2222221 33566677777777777777777777776665331 25566666666666666777777777666543111
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHH
Q 005161 223 NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMA 302 (711)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (711)
+-..|..+.-.|.+.++++.|+-.|+.+.+..|.+..+...+...+.+.|+.|+|+.+++++...++. |+..-..-+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 12234445556667777777777777777777766666666777777777777777777777666665 55555566666
Q ss_pred HHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCC
Q 005161 303 YVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKP 361 (711)
Q Consensus 303 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (711)
+...+++++|+..|+++++.-+. +...+..+...|.+.|+.+.|+.-|..+.+.+.++
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 67777777777777777655433 34456667777777777777777777776654333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-11 Score=111.45 Aligned_cols=292 Identities=12% Similarity=0.078 Sum_probs=224.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHc
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGI--TWNQELYDCVINCCAR 481 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 481 (711)
+..++-.....+++.+-.... ...|++.+...-+....+.....++|+|+.+|+++.+..+ --|..+|+.++-. +
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 344455556777777777776 4455666666666666677788999999999999998842 1255667666533 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 482 ALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTV 561 (711)
Q Consensus 482 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 561 (711)
..+. .+.++.+-.-.--+-.+.|...+.+.|.-.++.++|...|+++.+.+|....+|+.+..-|...++...|++-+
T Consensus 310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2221 12222222111112344566777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 005161 562 QEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRP 641 (711)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 641 (711)
+..++-+ |.|-..|-.+.++|.-.+...-|+-.|++..+. -+-|...|.+|..+|.+.++.++|++.|++....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999885 778899999999999999999999999999985 25688899999999999999999999999999864 34
Q ss_pred ChHhHHHHHHHHhccCChHHHHHHHHHHHH----cCC-CCC-cchHHHHHHHHHhcchHHHHHHHHHH
Q 005161 642 DLCSYNTLIKAYGIAGMVEDAVGLVKEMRE----NGI-EPD-KITYTNMITALQRNDKFLEAIKWSLW 703 (711)
Q Consensus 642 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 703 (711)
+...+..|+..|.+.++.++|...|++..+ .|. .|. .....-|..-+.+.+++++|..+...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 668899999999999999999999998775 232 332 23344466667778888887765544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-12 Score=109.71 Aligned_cols=290 Identities=14% Similarity=0.068 Sum_probs=189.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN---LENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 139 (711)
+.+.+.|.++|-.|.+.++...++-.+|.+.|.+.|..+.|+.+-+.+.++.-.+. ..+.-.+..-|.+.|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 46789999999999999998888999999999999999999999999877532211 123456777888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhh----HHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 140 LVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETT----YRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
++|..+...+ .--......|+..|-...++++|..+-+++.+.+..+...- |.-+...+....++++|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998754 33556778899999999999999999999988654332211 222333333334455555555554
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
.+ .++.....-..+.+.+...|+++.|.+.++.+.+.++..-..+
T Consensus 207 lq-----------------------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 207 LQ-----------------------------------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred Hh-----------------------------------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 44 4444443334444445555555555555555555554444555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSV 375 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (711)
...|..+|.+.|+.++....+.++.+....++. -..+........-.+.|...+.+.+.. +|+...+..++..-..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 666677777777777777777766655444332 222222223334455555555555543 7888888888876543
Q ss_pred ---cCCHHHHHHHHHHHHhC
Q 005161 376 ---MGMFTEAEKLYLNLKSS 392 (711)
Q Consensus 376 ---~~~~~~a~~~~~~~~~~ 392 (711)
.|...+....++.|...
T Consensus 328 daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cccccchhhhHHHHHHHHHH
Confidence 33455556666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-13 Score=127.46 Aligned_cols=287 Identities=11% Similarity=0.015 Sum_probs=221.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF--SPNIVAYNTLMTGYGKVSNMEAAQRL 176 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (711)
+.++|...|+.....-.. +.+....+..+|...+++++|+.+|+.+.+..+ -.+..+|.+.+--+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 457888999885544333 457778888999999999999999999887631 125566766654332 1 112222
Q ss_pred H-HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 177 F-LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
+ +.+.+.. +-.+.+|.++..+|.-+++.+.|++.|++..+. .| ..++|..+..-+....++|.|...|...+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 2333322 246788999999999999999999999998875 34 56788888888888899999999999999888
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHH
Q 005161 255 CQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLL 334 (711)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 334 (711)
+..-..+..+...|.+.++++.|+-.|+++++-+|. +......+...+.+.|+.++|+.++++....+++ ++..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 888888899999999999999999999999988887 7778888888899999999999999988777665 44444455
Q ss_pred HHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 005161 335 ICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRL 396 (711)
Q Consensus 335 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 396 (711)
...+...++.++|+..++++.+. ++.+...+..+...|.+.|+.+.|+.-|..+.+...++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66677789999999999998775 34556677888889999999999998888888765443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-09 Score=103.90 Aligned_cols=462 Identities=12% Similarity=0.065 Sum_probs=285.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAK 236 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (711)
+..++..| ..+++...++..+.+.+..+ --..|.....-.+...|+-++|.+..+.....++. +.+.|+.+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 34444443 45667777766666665321 22333333344455667788888777777665443 55667777777777
Q ss_pred CCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 237 YEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVL 316 (711)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 316 (711)
..++++|...+..+...++.+.+++..+.-...+.++++.....-...+...+. ....|..++.++.-.|+...|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888887777888887777777666665544 6677888888888889999999988
Q ss_pred HhhhhcC-CCccHhhHHHHH------HHHHccCChhhHHHHHHHHhhcCCCCcHHH-HHHHHHHHHccCCHHHHHHHHHH
Q 005161 317 GDKRWKD-TVFEDNLYHLLI------CSCKDSGHLANAVKIYSHMHICDGKPNLHI-MCTMIDTYSVMGMFTEAEKLYLN 388 (711)
Q Consensus 317 ~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~ 388 (711)
+...... ..|+...+.... ......|..+.|.+.+..-... ..|... -..-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 8876654 345554444332 3345678888888777665432 122222 23445667889999999999999
Q ss_pred HHhCCCCCCHHHHHHH-HHHHHHcCChHHHH-HHHHHHHhcCCCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCC
Q 005161 389 LKSSGIRLDLIAFTVV-VRMYVKAGSLKDAC-AVLETMEKQKDIEPDAYLYCDM-LRIYQQCGMLDKLSYLYYKILKSGI 465 (711)
Q Consensus 389 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~ 465 (711)
++.. .||...|... ..++.+-.+.-+++ .+|....+. .|....-..+ ++......-.+....++....+.|+
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~---y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK---YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc---CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9987 3666655544 44443343444444 666665332 2221111111 1111112223344556666677776
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHh----CC----------CCccHHHHHH--HHHHHhccCcHHHHHHHHHH
Q 005161 466 TWNQELYDCVINCCARALPIDELSRVFDEMLQ----HG----------FTPNIITLNV--MLDIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~ 529 (711)
++ ++..+...|-.....+-..++.-.+.. .| -+|+...|.. ++..|-..|+++.|...++.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 53 333444333322221111111111111 10 1455554443 56667888999999999999
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY 609 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (711)
+....|.-+..|..-.+.+.+.|++++|..++++..+.+ .+|...-..-.....++++.++|.++.....+.|. +..
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 888877777777777888899999999999999888764 44544444556666788899999999888887653 211
Q ss_pred --------HHHHH--HHHHhhcCCHHHHHHHHHHHH
Q 005161 610 --------TYNIM--IDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 610 --------~~~~l--~~~~~~~g~~~~A~~~~~~~~ 635 (711)
+|..+ ..+|.+.|++-.|++-|..+-
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 33333 245667777766666555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-10 Score=104.19 Aligned_cols=294 Identities=12% Similarity=0.044 Sum_probs=174.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
.|++..|+++..+..+.+..+...|..-+.+--+.|+.+.+-.++.++.+....++........+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 56777777777776666666555566666666666777777777776665533445555666666666677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 005161 143 VSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP 222 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 222 (711)
.++.+.+ +.++.+......+|.+.|++.....++..+.+.+.-.|...-. .
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 7666664 3355566666667777777777777777776665433322100 0
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHH
Q 005161 223 NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMA 302 (711)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (711)
...++..+++-....++.++-.+.++.....--....+...++.-+...|+.++|.++.++.+++.-.++ -...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 1123444444444444444444444444443333345555566666666666666666666666554433 111112
Q ss_pred HHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHH
Q 005161 303 YVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEA 382 (711)
Q Consensus 303 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (711)
..+-++...-++..+......+. ++..+..+...|.+++.+.+|...|+..++. .|+..+|+.+.+++.+.|+..+|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHH
Confidence 33445555555555544333222 3356667777777777777777777766553 57777888888888888888888
Q ss_pred HHHHHHHHhC
Q 005161 383 EKLYLNLKSS 392 (711)
Q Consensus 383 ~~~~~~~~~~ 392 (711)
.+..++....
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 8777766543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-09 Score=104.63 Aligned_cols=364 Identities=11% Similarity=0.011 Sum_probs=184.9
Q ss_pred HHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 311 DAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLK 390 (711)
Q Consensus 311 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 390 (711)
.|+..+.+.....-. +..+|+.|.-. ...|++.-+...|-.-.... +....+|..+.-.+....+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 445555444332211 33455554433 44566666666665544332 4455677777777777788888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---HHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 005161 391 SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET---MEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS---- 463 (711)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 463 (711)
... +.+...|..........|+.-++..+|.. +....+-.|....|.........+|+.+.-+...+.+-..
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 653 23455555555555556777777777754 2222333444444444444555666655443333322111
Q ss_pred -----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHH----HHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 464 -----GITWNQELYDCVINCCARALPIDELSRVFDEMLQH-GFTPNIITLN----VMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 464 -----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
+.+.+...|........+.+.+..|.+...+.... ....+...++ .....+...|.++.|..-+......
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 22334555666666666666666666555544310 0012222333 2233445556666554433211110
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 534 GLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDG-FSVSL-EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTY 611 (711)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (711)
.+..+...-+. ..-.++++++.+.|+++.... -..+. .....++-+....+..+.|...+-+.... -+|+..+.
T Consensus 1037 --vdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sl 1112 (1238)
T KOG1127|consen 1037 --VDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSL 1112 (1238)
T ss_pred --HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhH
Confidence 01111111111 134577888888888876541 11221 23344444555667777787777766654 25666655
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhH---HHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHH
Q 005161 612 NIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSY---NTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMI 685 (711)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 685 (711)
-.+...+.-..+-.....+.+++... .+.....| -..=..|.+.|+-....+.+++..- ..| |+..|..|-
T Consensus 1113 l~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h--~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1113 LPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVH--SNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence 55555555444444444444444331 00000011 1112345577777777788888775 556 556666554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-11 Score=105.68 Aligned_cols=286 Identities=12% Similarity=0.070 Sum_probs=146.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005161 375 VMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLS 454 (711)
Q Consensus 375 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 454 (711)
..|++..|++......+.+-. ....|..-.++--..|+.+.+-.++.+..+. .-.++....-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHH
Confidence 357777777777776665432 2233444444555567777777777776332 22344445555556666677777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH-------HHHHHHHHHHhccCcHHHHHHHH
Q 005161 455 YLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNI-------ITLNVMLDIYGKAKLFKRVRKLF 527 (711)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 527 (711)
.-+.++.+.+.. ++.+......+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 766666666532 4556666666777777777777777777666543332 22333333333333333333333
Q ss_pred HHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005161 528 SMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFD 607 (711)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (711)
+.....-..++..-.+++.-+.+.|+.++|.++..+..+++..|+. ...-.+.+-++.+.-.+..+...+. .+.+
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 3333332234444445555555555555555555555554443331 1111233344444444444444332 2233
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 608 HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
+..+.+|...|.+.+.|.+|...|+..++ ..|+..+|+.+..++...|++.+|.+..++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34455555555555555555555554444 34555555555555555555555555555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-09 Score=98.80 Aligned_cols=293 Identities=10% Similarity=0.018 Sum_probs=162.0
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHH
Q 005161 410 KAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELS 489 (711)
Q Consensus 410 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 489 (711)
..++...|...+-.+.....++.|+.....+..++...|+.++|...|++....++- +........-.+.+.|+.+...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHH
Confidence 344555555555444444445556666666666666666666666666665544210 1111111112233455555555
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005161 490 RVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGF 569 (711)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 569 (711)
.+...+.... .-+...|-.-.......++++.|+.+-++..+.++.+...+..-...+...|++++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 5555544321 11222222222333445666666666666666666666666666666666666666666666665542
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhhcC-CHHHHHHHHHHHHHCCCCCC-hHhH
Q 005161 570 SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI-DIYGEQG-WINEVVGVLTELKECGLRPD-LCSY 646 (711)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g-~~~~A~~~~~~~~~~~~~p~-~~~~ 646 (711)
|-+...|.-|+..|...|++.+|.-.-+...+. ++.+..+...+. ..|.-.. --++|.+++++... +.|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 445666666677666666666666655555443 333444444442 3333222 23566666666555 4565 5556
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHHHhCcC
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGLQ 710 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 710 (711)
+.+...+...|..++++.++++... ..||......|...+...+.+++|.+.|....+.+++
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6666666666777777777666665 5666666666666666666677776666666555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-09 Score=102.64 Aligned_cols=481 Identities=12% Similarity=0.029 Sum_probs=295.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHhhHHHHHH---HHHcCCCHHHHHHHHHHHHHCCCCCh----hHHHHHHH--HHHhc
Q 005161 201 RAGNYREAKWYYKELKHLGYKPNASNLYTLIN---LHAKYEDEEGAVNTLDDMLNMGCQHS----SILGTLLQ--AYEKA 271 (711)
Q Consensus 201 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~--~~~~~ 271 (711)
..++.+.+..-+......+...+..++..+.. .|...++.+++ ++-.++....-+. ++...++. -..+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 34666777777777776666666666555544 34455666665 3333333222222 22222221 22222
Q ss_pred CCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHH
Q 005161 272 GRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIY 351 (711)
Q Consensus 272 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 351 (711)
+++ .-|...|..+.-+....|+++.+.+.|++....-.. ....|..+..++...|.-..|..++
T Consensus 317 ~~~---------------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 317 KKF---------------QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred hhh---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHH
Confidence 222 236667777888888899999999999887654333 4567888888888899988899888
Q ss_pred HHHhhcCCCC-cHHHHHHHHHHH-HccCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCh
Q 005161 352 SHMHICDGKP-NLHIMCTMIDTY-SVMGMFTEAEKLYLNLKSS--GI--RLDLIAFTVVVRMYVKA-----------GSL 414 (711)
Q Consensus 352 ~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~ 414 (711)
+.-......| +...+...-..| .+.+..++++..-.++.+. +. ......|..+.-+|... ...
T Consensus 381 ~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 381 RESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred HhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 8765443223 333343333444 3456777777666666552 11 12334444444444322 124
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 005161 415 KDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDE 494 (711)
Q Consensus 415 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 494 (711)
.++++.+++..+..+..|++..|.. --|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5677788887666555565544443 34667788999999999999987777888898888888889999999999887
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--C-------chhHHHHHHHHHHhcCCHHHHHHHHHH--
Q 005161 495 MLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--V-------DVISYNTIIAAYGQNKNLESMSSTVQE-- 563 (711)
Q Consensus 495 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~-- 563 (711)
....- ..|......-+..-...++.+++......+...-. + .......-.......++..++.+....
T Consensus 539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 77531 11111111112222234555555444433221100 0 000000000000000111111111111
Q ss_pred ---------------HHHCCCCCC--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 005161 564 ---------------MQFDGFSVS--------LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE 620 (711)
Q Consensus 564 ---------------~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (711)
+...-..|. ...|......+.+.+..++|...+.+.... .+-....|......+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHH
Confidence 111111111 223445566777888889998888887764 34456677777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHH--HHHHHHHcCCCC-CcchHHHHHHHHHhcchHHH
Q 005161 621 QGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVG--LVKEMRENGIEP-DKITYTNMITALQRNDKFLE 696 (711)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 696 (711)
.|.+.+|.+.|..... +.|+ +.+..++..++...|+..-|.. ++..+.+ +.| +...|..++..+.+.|+.++
T Consensus 697 ~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHH
Confidence 9999999999999887 6787 7889999999999999888888 8999988 778 56899999999999999999
Q ss_pred HHHHHHHHHHh
Q 005161 697 AIKWSLWMKQI 707 (711)
Q Consensus 697 A~~~~~~m~~~ 707 (711)
|.+.|.-..+.
T Consensus 773 Aaecf~aa~qL 783 (799)
T KOG4162|consen 773 AAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhh
Confidence 99999877653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.1e-09 Score=100.04 Aligned_cols=551 Identities=15% Similarity=0.110 Sum_probs=276.2
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH--------------------cCCCc
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRK--------------------LGLVC 83 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~ 83 (711)
+....|+++.|..+++... .| +.....|..+..+-...|++--|++-|..+-. .+...
T Consensus 453 aaid~~df~ra~afles~~-~~-~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg 530 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLE-MG-PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG 530 (1636)
T ss_pred cccccCchHHHHHHHHhhc-cC-ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence 4457789999988887763 33 23345666666665666666555555543321 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
..-|-.-...-.-..++.+|..+|-+ + | .....|..|....++++|..+-+. .|.+.-...-.+.+.+
T Consensus 531 t~fykvra~lail~kkfk~ae~ifle--q-----n--~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILEKKFKEAEMIFLE--Q-----N--ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQA 598 (1636)
T ss_pred chHHHHHHHHHHHHhhhhHHHHHHHh--c-----c--cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHH
Confidence 11121111111222345555555432 1 1 122345556666667766654332 2323333344555666
Q ss_pred hhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHH
Q 005161 164 YGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGA 243 (711)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (711)
++..|+-++|-++- . .|..+ .+.|+.|.+.|.+.+|......-.. +..|......+..++.+..-++.|
T Consensus 599 l~dt~qd~ka~elk----~----sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 599 LMDTGQDEKAAELK----E----SDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHhcCchhhhhhhc----c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhh
Confidence 66677766665442 1 12222 3457778888888777665432211 122444444444444444444444
Q ss_pred HHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcC
Q 005161 244 VNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 323 (711)
-.+|+++.. +...+..+-+-+-+..|.++-+-+....+. ..-......+...|+++.|+..|-+..
T Consensus 668 gdlfeki~d--------~dkale~fkkgdaf~kaielarfafp~evv---~lee~wg~hl~~~~q~daainhfiea~--- 733 (1636)
T KOG3616|consen 668 GDLFEKIHD--------FDKALECFKKGDAFGKAIELARFAFPEEVV---KLEEAWGDHLEQIGQLDAAINHFIEAN--- 733 (1636)
T ss_pred hhHHHHhhC--------HHHHHHHHHcccHHHHHHHHHHhhCcHHHh---hHHHHHhHHHHHHHhHHHHHHHHHHhh---
Confidence 444444432 111111222222222333322222111111 111122334455666777766654321
Q ss_pred CCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005161 324 TVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTV 403 (711)
Q Consensus 324 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 403 (711)
.....+.+......+.+|+.+++.+.... ....-|..+.+.|...|+++.|.++|.+.- .++-
T Consensus 734 ------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~d 796 (1636)
T KOG3616|consen 734 ------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKD 796 (1636)
T ss_pred ------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHH
Confidence 23344556667778888888888776542 334456777788888888888888875432 3455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL 483 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 483 (711)
.|.+|.+.|++++|.++-.+. .+.......|-.-..-+-+.|++.+|.+++-.+. .|+ ..|..|-+.|
T Consensus 797 ai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~ 864 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHG 864 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhC
Confidence 677888888888888877665 3334445556555566667777777776654322 122 2455677777
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 484 PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQE 563 (711)
Q Consensus 484 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 563 (711)
..+..+++..+.....+ ..+-..+..-|...|+++.|...|-+... |.+-+..|...+-|++|.++-+.
T Consensus 865 ~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 865 LDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred cchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 77777766655432211 12233344556667777777777654433 44555556566666665544332
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh
Q 005161 564 MQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDL 643 (711)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 643 (711)
.| ..+..- .+.-.+++.=--+.|.+++++.- ....-++.-+..+.++-|..+-+-..+.. .|.
T Consensus 934 ---eg-g~n~~k--~v~flwaksiggdaavkllnk~g---------ll~~~id~a~d~~afd~afdlari~~k~k-~~~- 996 (1636)
T KOG3616|consen 934 ---EG-GANAEK--HVAFLWAKSIGGDAAVKLLNKHG---------LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE- 996 (1636)
T ss_pred ---cc-cccHHH--HHHHHHHHhhCcHHHHHHHHhhh---------hHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc-
Confidence 12 111111 11112222222233444443321 11222333344555555555544433321 122
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
..-.+..-+...|++++|-+.|-+.++
T Consensus 997 -vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 997 -VHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred -chhHHhhhhhhccchhhhhHhhHHHhh
Confidence 222334444566667777666666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-09 Score=106.30 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh
Q 005161 226 NLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK 305 (711)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (711)
++..+...|...|++++|....+..++..|.....+..-++.+-..|++++|...++.+...+.. |...-+..+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555444 66667777777788
Q ss_pred cCCHHHHHHHHHhhhhcCC
Q 005161 306 HGLIDDAMKVLGDKRWKDT 324 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~ 324 (711)
+|+.++|.+++......+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHhhcCCCC
Confidence 8888888887777765554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-08 Score=98.36 Aligned_cols=443 Identities=11% Similarity=0.041 Sum_probs=218.7
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHhhH
Q 005161 149 GFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP-NASNL 227 (711)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 227 (711)
.+..+...|..|.-+...+|+++.+-+.|++....-+ -....|+.+...+...|.-..|..+.+........| +...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3556777888888788888888888888887765322 345567777777777888888888877665543223 33344
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHCCCC-----ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHH
Q 005161 228 YTLINLHA-KYEDEEGAVNTLDDMLNMGCQ-----HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVM 301 (711)
Q Consensus 228 ~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 301 (711)
......|. +.+..+++.....+++..... ....+..+.-+|...-... +..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a----------------~~~------- 453 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA----------------NLK------- 453 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC----------------CCh-------
Confidence 44444443 456666666666666552211 1111222222221110000 000
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHH
Q 005161 302 AYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTE 381 (711)
Q Consensus 302 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (711)
-.+.....+++..+++..+.+.. |+...-.+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+
T Consensus 454 -seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 454 -SERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 00001123444445554444333 2222223333344455566666666666555445555566655555566666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005161 382 AEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKIL 461 (711)
Q Consensus 382 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (711)
|+.+.+..... ...|......-+..-..-++.++++.....+..-..-.+.+. .. ++-.........+.
T Consensus 532 Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q---~~-------~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 532 ALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ---QT-------LDEGKLLRLKAGLH 600 (799)
T ss_pred HHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh---hh-------hhhhhhhhhhcccc
Confidence 66666555443 111111111112222224455555544444322111011100 00 00000111111100
Q ss_pred h--cCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCC--cc------HHHHHHHHHHHhccCcHHHHHHHHH
Q 005161 462 K--SGITWNQELYDCVINCCARAL---PIDELSRVFDEMLQHGFT--PN------IITLNVMLDIYGKAKLFKRVRKLFS 528 (711)
Q Consensus 462 ~--~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 528 (711)
- ....-...++..+.......+ ..+.. +...... |+ ...|......+.+.+..++|..-+.
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 0 000111112211111111000 00000 1100000 11 2233444555666677777776666
Q ss_pred HHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCC
Q 005161 529 MAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKN--VLRRMKETSCTF 606 (711)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~ 606 (711)
++.+..+..+..|......+...|++.+|.+.|......+ |.+.....++...+...|+..-|.. ++..+.+.+ +.
T Consensus 675 Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~ 752 (799)
T KOG4162|consen 675 EASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PL 752 (799)
T ss_pred HHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CC
Confidence 6666666666677777777777777777777777666553 3345566667777777776666655 777777653 44
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+...|-.+...+.+.|+.++|.+.|+...+
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 566777777777777777777777777765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-07 Score=95.64 Aligned_cols=245 Identities=10% Similarity=0.070 Sum_probs=130.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
++..+++.|.++.+.-+.. +.|..|| |..+++.+.+ -+.+.+.+....+....+ +..-++.++..+...+..
T Consensus 487 Vi~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~-~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE-PLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC-CcccHHHHHHHHHHHHhh
Confidence 3444455555555443332 3455666 3445555555 578888888777777555 233456666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 005161 101 EKAEEVIRLIREDKVVPNLEN-WLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (711)
+.+..++-++++.+ .|+..- -+.++..- -.+ |-++.+.+...+.- +..-+..+...|.+.|-+.+|++.|..
T Consensus 559 Qq~TSFLLdaLK~~-~Pd~g~LQTrLLE~N-L~~----aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLN-SPDEGHLQTRLLEMN-LVH----APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred hhhHHHHHHHhcCC-ChhhhhHHHHHHHHH-hcc----chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhccc
Confidence 77766666665533 233222 12222211 112 22233333332211 222256677778888888888877765
Q ss_pred HHhcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-
Q 005161 180 IKDVGLEPDETTYR----SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG- 254 (711)
Q Consensus 180 ~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 254 (711)
+.+- +.....-+ --+-.|.-.-.++.+.+.++.|...+++-|..+...+..-|...-..+...++|+......
T Consensus 632 l~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 632 LYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 5431 11111100 0122333445677788888888777666665555555444444444444445554433211
Q ss_pred -----------CCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 005161 255 -----------CQHSSILGTLLQAYEKAGRTDNVPRILK 282 (711)
Q Consensus 255 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 282 (711)
.+.+++....+.+.++.|++.+.+++.+
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 1233666777888888888877777665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-09 Score=104.41 Aligned_cols=133 Identities=11% Similarity=-0.041 Sum_probs=77.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECD-VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
+...+......|.+..++++|....-..-+.. ...-..-|..+.-.|.+.++...|...|+...+.+|.+...|..++.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGe 604 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGE 604 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34556666677777777777766622222211 11122233444455667777777777777777777776777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 93 IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
+|...|++..|+++|.++...++. +....-...-..+..|.+.+|+..++....
T Consensus 605 AY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 777777777777777766554422 111111222233456777777777666654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-09 Score=99.87 Aligned_cols=146 Identities=13% Similarity=0.060 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCChhhHHHHHHHHHccCC
Q 005161 413 SLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYY--------KILKSGITWNQELYDCVINCCARALP 484 (711)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~ 484 (711)
....|..++...-+.. ........-.++......|+++.|.+++. .+.+.+.. +.+...+...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccC
Confidence 3566666666653322 11123344455566667777777777776 33333333 3344555666666666
Q ss_pred HHHHHHHHHHHHhC--CCCccHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 485 IDELSRVFDEMLQH--GFTPNII----TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMS 558 (711)
Q Consensus 485 ~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 558 (711)
.+.|..+++..... ...+... ++..+...-.+.|+.++|..+++++.+.++++..+...++.+|++. +++.|.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence 66666666665531 0011111 2222233334557777777777777777777777777777776654 345554
Q ss_pred HHHH
Q 005161 559 STVQ 562 (711)
Q Consensus 559 ~~~~ 562 (711)
.+-.
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 4433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-11 Score=124.03 Aligned_cols=217 Identities=11% Similarity=-0.027 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005161 64 WNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL---------SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 64 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (711)
+++++|...|+++.+.+|....+|..+..+|... +++++|...+++....++. +..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3567899999999999988877777777665432 3478888888888887655 66777777788888899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 135 LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKE 214 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 214 (711)
+++|...+++..+.+ +.+...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999888875 345677788888888889999999999988876532 222333344456667888889888888
Q ss_pred HHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 215 LKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
+.....+.++..+..+..++...|+.++|...+.++....+........+...|+..|+ .|...++.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 77653222344566667777788888888888888776655544555556666666553 5555454433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-08 Score=100.26 Aligned_cols=240 Identities=15% Similarity=0.143 Sum_probs=141.7
Q ss_pred CCHhhHHHHHH--HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CC
Q 005161 48 PNVATFGMLMG--LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK---------VV 116 (711)
Q Consensus 48 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~ 116 (711)
-|..|...+++ .|...|+.+.|.+-.+.+.. ...|..|...+++..+.+-|.-.+-.|.... ..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-----~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-----DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-----hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45566666654 46778999999888876654 4579999999999988887776665554311 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 005161 117 PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMI 196 (711)
Q Consensus 117 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 196 (711)
|+ .+-..+.-.....|.+++|..++.+-.+. ..|=+.|...|.+++|.++-+.--.-.+ -.||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 12222333344678899999998887763 3344566678999999988765443222 23454455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-------------------CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 197 EGWGRAGNYREAKWYYKELKHLG-------------------YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 197 ~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
.-+-..++.+.|+++|++..... -..|...|.-........|+.+.|+.++..+..
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 55556678888888887542110 011233333333444455555555555554443
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 258 SSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
+..+++..|-.|+.++|-++-++.. |..+...|.+.|-..|++.+|...|.+.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344555555566666655554422 4445555666666666666666665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-11 Score=105.86 Aligned_cols=235 Identities=15% Similarity=0.056 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 005161 435 YLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIY 514 (711)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 514 (711)
+--+.+..+|.+.|.+.+|...++..++.. |-+.||..+.+.|.+..++..|+.++.+-++. ++.+......+...+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 334678889999999999999999888874 45667888999999999999999999999876 455666667788888
Q ss_pred hccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005161 515 GKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKN 594 (711)
Q Consensus 515 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 594 (711)
...++.++|.++++...+..+.+..+...+...|.-.++++-|+.+|+++.+.|+ .++..|+.+.-+|...++++-++.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 9999999999999999999999999999999999999999999999999999984 578889889989999999999999
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 595 VLRRMKETSCTFD--HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 595 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
-|++.+..--.|+ ...|-.+.......||+.-|.+.|+-...+ .|+ ...+|.|...-.+.|++++|..+++...+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9999987533344 347888888888999999999999988875 344 78999999999999999999999999987
Q ss_pred cCCCCC
Q 005161 672 NGIEPD 677 (711)
Q Consensus 672 ~~~~p~ 677 (711)
+.|+
T Consensus 458 --~~P~ 461 (478)
T KOG1129|consen 458 --VMPD 461 (478)
T ss_pred --hCcc
Confidence 6675
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-11 Score=122.45 Aligned_cols=234 Identities=14% Similarity=0.009 Sum_probs=176.4
Q ss_pred CchHhHHHHHHHHHh-----cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHH---------ccCCHHHHHHHHHHHHH
Q 005161 13 LNFQLFNTLIYACNK-----RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYK---------KSWNVEEAEFAFNQMRK 78 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 78 (711)
.+...|...+++... .++.++|..+|+++++.. +.+...|..+..++. ..+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 345666677776422 245679999999999875 334556655555443 23458999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005161 79 LGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN 158 (711)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (711)
.+|.+..++..+..++...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 99999999999999999999999999999999987755 5677888899999999999999999999998533 333334
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcC
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKY 237 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 237 (711)
.++..+...|++++|...+++..+...+.+...+..+...+...|++++|...+.++... .|+ ....+.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 445556678999999999999876543224555777888888999999999999987654 333 33345555566777
Q ss_pred CCHHHHHHHHHHHHHC
Q 005161 238 EDEEGAVNTLDDMLNM 253 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~ 253 (711)
| +.+...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 7 4777777766653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-09 Score=101.28 Aligned_cols=210 Identities=16% Similarity=0.134 Sum_probs=120.1
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHc-C-------C-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLEC-D-------V-QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE 84 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 84 (711)
+..+|..+.+-|.+..+.+-|.-++..|... | . .|+ .+-..+...-...|.+++|+.++++..+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 6778999999999998888887776655432 1 0 122 333334444457899999999998887754
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF-------------- 150 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 150 (711)
.|-..|...|.+++|+++.+.-..-. =..||.....-+-..++.+.|++.|+......+
T Consensus 831 ----LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 831 ----LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ----HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 45567778899999998887533222 224666666667777888888877764322100
Q ss_pred -----CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHh
Q 005161 151 -----SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNAS 225 (711)
Q Consensus 151 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 225 (711)
..|...|......+-..|+.+.|+.+|....+ |-++++..|-+|+.++|-.+-++- -|..
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~A 968 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKA 968 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHH
Confidence 11333333333333344555555555544332 344444444555555554444332 1333
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 226 NLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
....+.+.|...|++.+|...|-++
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3334445555555555555444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-07 Score=92.79 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005161 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMIT 686 (711)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 686 (711)
.+..|+.+..+-.+.|.+.+|++-|-+. -|+..|...+....+.|.|++-++++...++..-.|.. -..|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3456777777777777777776655332 34666777777777777777777777776664444432 234555
Q ss_pred HHHhcchHHHHHHH
Q 005161 687 ALQRNDKFLEAIKW 700 (711)
Q Consensus 687 ~~~~~~~~~~A~~~ 700 (711)
+|.+.++..|-.++
T Consensus 1175 AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHhchHHHHHHH
Confidence 66666665555444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-08 Score=94.50 Aligned_cols=474 Identities=13% Similarity=0.067 Sum_probs=243.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
=++.+...|++++|.+...++...+|.+..++..-+-++.+.++|++|+.+.+.-.... ..+...| .-+.+..+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHHHHcccH
Confidence 34556678899999999999999988888888888889999999999986665432111 0011111 233444578999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW-GRAGNYREAKWYYKE 214 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 214 (711)
++|...++-..+ .+..+...-...+.+.|++++|..+|+.+.+.+. +| +..-+.+- ...+ .+... +.
T Consensus 96 Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~---a~l~~-~~ 163 (652)
T KOG2376|consen 96 DEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVA---AALQV-QL 163 (652)
T ss_pred HHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHH---HhhhH-HH
Confidence 999888883222 2334555556677888999999999999877543 22 22222111 1111 11111 12
Q ss_pred HHhcCCCccHhhHHHHH---HHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCc
Q 005161 215 LKHLGYKPNASNLYTLI---NLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF 291 (711)
Q Consensus 215 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 291 (711)
+......| ..+|..+. -.+...|++..|+++++...+.+... ..+-+...+-.+.-+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------------l~~~d~~eEeie~el------ 223 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------------LEDEDTNEEEIEEEL------ 223 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------------hcccccchhhHHHHH------
Confidence 22222233 23343333 34557788888888888775432110 000000000000000
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhh----HHHHHHHHHccCChhh-HHHHHHHHhhcCCCCcHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL----YHLLICSCKDSGHLAN-AVKIYSHMHICDGKPNLHIM 366 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~ 366 (711)
| .+...+.-++...|+.++|..++..+...++. |... -|.++..-....-++. ++..++..
T Consensus 224 ~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~------------ 289 (652)
T KOG2376|consen 224 N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ------------ 289 (652)
T ss_pred H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHH------------
Confidence 0 11223444455566666666666655555433 1111 1111111100000000 00000000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 005161 367 CTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQ 446 (711)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (711)
.....+..+..+..-... ....-+.++..| .+..+.+.++...+ .+..|.. .+..++..+.+
T Consensus 290 --------~~~l~~~~l~~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a~l---p~~~p~~-~~~~ll~~~t~ 351 (652)
T KOG2376|consen 290 --------VFKLAEFLLSKLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSASL---PGMSPES-LFPILLQEATK 351 (652)
T ss_pred --------HHHhHHHHHHHHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHHhC---CccCchH-HHHHHHHHHHH
Confidence 000011111111111110 111112233333 33444455544443 2223443 33444433322
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH--------HHHhCCCCccHHHHHHHHHHHhc
Q 005161 447 --CGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD--------EMLQHGFTPNIITLNVMLDIYGK 516 (711)
Q Consensus 447 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~ 516 (711)
......+.+++....+....-...+.-..+......|+++.|++++. .+.+.+..| .+...+...+.+
T Consensus 352 ~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYK 429 (652)
T ss_pred HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHh
Confidence 22467778888777776555456677777788889999999999998 555544444 445566677777
Q ss_pred cCcHHHHHHHHHHHHHcCC---Cc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 005161 517 AKLFKRVRKLFSMAKKLGL---VD----VISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQM 589 (711)
Q Consensus 517 ~~~~~~a~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 589 (711)
.++-+.|..++......-. +. ..++...+..-.+.|+.++|..+++++.+.. +++..+...++.+|++. +.
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~ 507 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DP 507 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CH
Confidence 7777777777765544211 11 1222333333445677777777777777653 56666666666666654 45
Q ss_pred HHHHHHHHHH
Q 005161 590 ENFKNVLRRM 599 (711)
Q Consensus 590 ~~A~~~~~~~ 599 (711)
+.|..+-..+
T Consensus 508 eka~~l~k~L 517 (652)
T KOG2376|consen 508 EKAESLSKKL 517 (652)
T ss_pred HHHHHHhhcC
Confidence 5555554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-09 Score=103.69 Aligned_cols=299 Identities=12% Similarity=0.058 Sum_probs=149.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCC
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTD 275 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (711)
...+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+|++...+..+..+........
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34456778888888888664443 33334445556667777788888888888887777776666666666553322110
Q ss_pred cHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCCh-hhHHHHHHHH
Q 005161 276 NVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHL-ANAVKIYSHM 354 (711)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 354 (711)
. ...+...++++++....+. ......+.-.+.....+ ..+...+..+
T Consensus 90 ~------------------------------~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~ 137 (517)
T PF12569_consen 90 D------------------------------EDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQ 137 (517)
T ss_pred c------------------------------ccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHH
Confidence 0 1122333333333222211 00111111111111111 1222333444
Q ss_pred hhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C----------CCCCHHHH--HHHHHHHHHcCChHHHH
Q 005161 355 HICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSS----G----------IRLDLIAF--TVVVRMYVKAGSLKDAC 418 (711)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~A~ 418 (711)
+..|+|+ +|+.+-..|......+-..+++...... + -+|+...| ..+...|...|++++|+
T Consensus 138 l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 138 LRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred HhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4444333 3333333343333333333333333221 0 12333223 33455555667777777
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 005161 419 AVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQH 498 (711)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 498 (711)
++++..+... +..+..|..-.+.+-+.|++.+|.+.++........ |..+-+..+..+.+.|+.++|..++....+.
T Consensus 215 ~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 215 EYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 7776665442 122445566666666677777777766666665432 5555555666666777777777776666554
Q ss_pred CCCccH--------HHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 499 GFTPNI--------ITLNVMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 499 ~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
+..|.. ........+|.+.|++..|++.|..+.+.
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 432211 11123345666677777776666655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-10 Score=107.30 Aligned_cols=202 Identities=17% Similarity=0.120 Sum_probs=137.9
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
....+..+...+...|++++|...|+.+.+.+|....++..+...+...|++++|.+.+++.....+. +...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 34556666677777777777777777777777666667777777777777777777777777665433 44566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+...|++++|...+++...... +.....+..+...+...|++++|...|++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766421 22344566666777777778888777777766432 245566677777777788888
Q ss_pred HHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 005161 208 AKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253 (711)
Q Consensus 208 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (711)
|...+++.... ...+...+..+...+...|+.+.|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88777777665 2334555556666777777777777777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-10 Score=107.25 Aligned_cols=200 Identities=16% Similarity=0.108 Sum_probs=133.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|.+.++.+++.. +.+...+..+...+...|++++|.+.+++..+..+.....+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556666677777777777777777776653 344566666667777777777777777777777666666777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
...|++++|.+.++........+ ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766542211 23445556666777777777777777777653 23455666677777777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 174 QRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
...+++..+.. ..+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777766542 23445555666666677777777777666544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-11 Score=103.80 Aligned_cols=232 Identities=12% Similarity=-0.016 Sum_probs=205.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQ 550 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (711)
--+.+.++|.+.|.+.+|...++..++. .|-+.||..|..+|.+..++..|+.++.+-.+..|-++....-+.+.+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3467888999999999999999998876 57778888899999999999999999999999988888888899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005161 551 NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGV 630 (711)
Q Consensus 551 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (711)
.++.++|.++|+...+.. +.+.....++...|.-.++.+-|..++++++..| ..++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998874 6677788888888999999999999999999987 45888999999999999999999999
Q ss_pred HHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 631 LTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 631 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
|++....--.|+ ..+|..+.......|++.-|.+.|+-... -.|+ ...++.|.-.-.+.|+.++|..+++..+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999988555566 57899999999999999999999999876 4455 478888888889999999999999988765
Q ss_pred C
Q 005161 708 G 708 (711)
Q Consensus 708 g 708 (711)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 4
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-09 Score=96.83 Aligned_cols=293 Identities=12% Similarity=0.025 Sum_probs=223.1
Q ss_pred hcCChHHHHHHHHHHhH-cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLE-CDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEE 105 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (711)
..++...|...+-.+.. +-++-|......+..++...|+.++|...|++..-.+|....+.......+.+.|+++....
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444443333322 23577888888999999999999999999999999999877666666777788899998888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC
Q 005161 106 VIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL 185 (711)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (711)
+...+....- .+...|-.-+..+...++++.|+.+-+..++.. +.+...+-.-...+...|+.++|.-.|.......+
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 8777655331 234445455555667889999999999988875 34566665556677888999999999998876432
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHH-HHH-HcCCCHHHHHHHHHHHHHCCCCChhHHHH
Q 005161 186 EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLI-NLH-AKYEDEEGAVNTLDDMLNMGCQHSSILGT 263 (711)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 263 (711)
-+...|..|+..|...|.+.+|.-+-+..... ...+..++..+. ..+ ....--++|+.+++..++..|........
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 57889999999999999999998877766543 233444444442 222 23334588999999999998888899999
Q ss_pred HHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 005161 264 LLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTV 325 (711)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 325 (711)
++..+...|+.+++.++++..+.. .||....+.|.+.+...+.+++|.+.|......++.
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987764 468888999999999999999999998887766654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-07 Score=92.56 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=98.8
Q ss_pred HHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCC
Q 005161 264 LLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGH 343 (711)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (711)
.+.+-....++..|..+++.+.+++.. ...|..+...|...|+++.|.++|.+.. .++..|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 444555566677777777666655432 3456666777777777777777775432 35556677777777
Q ss_pred hhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005161 344 LANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET 423 (711)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 423 (711)
++.|.++-++... .......|..-..-+...|++.+|.++|-.+.. |+. .|.+|-+.|..++.+++..+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHH
Confidence 7777776666542 233444555555556667777777766644432 332 35566677777766666654
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005161 424 MEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYK 459 (711)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 459 (711)
-.. ..-..|...+..-+-..|+...|...|-+
T Consensus 876 ~h~----d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hCh----hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 311 11223444555555666666666655543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=91.39 Aligned_cols=204 Identities=14% Similarity=0.027 Sum_probs=157.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
+...|.-.|.+.|+...|.+-++++++++|....+|..+...|.+.|..+.|.+.|++.+...+. +..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 44456667788888888888888888888888888888888888888888888888888877655 66777888888888
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005161 132 QGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKW 210 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 210 (711)
.|++++|...|++...... ..-..+|..+.-+..+.|+.+.|.+.|++..+... -...+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888887532 22334666677677788888888888888877543 233445667777888888888888
Q ss_pred HHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 211 YYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
.++.....+. ++...+-..|+.-...||.+.+.+.=.++.+..|.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888877765 7777777778888888888888777777777666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-09 Score=89.48 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=132.2
Q ss_pred cCCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 9 LGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
+|...-..-+.+++..+.+..++..|.++...-.++. +.+....+.|..+|....++..|-.-++.+....|.-..-..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444445556677777777778888888877766653 336666666777777778888888888877776665444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN--AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
.-.+.+-+.+.+..|+.+...|.+. ++...-..-+. ...+.+++..+..++++.... .+..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeec
Confidence 5566677778888888887766553 12211111111 222467777777777766643 244555556666677
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005161 167 VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK 221 (711)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 221 (711)
.|+++.|.+-|+...+.+--.....||..+..| +.|++..|++...+..++|++
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 788888888887777654444556666555444 567788888888877777654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-09 Score=90.63 Aligned_cols=293 Identities=13% Similarity=0.029 Sum_probs=148.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCC
Q 005161 194 SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGR 273 (711)
Q Consensus 194 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (711)
+.+..+++..+++.|.+++..-.+... -+...+..+..+|-...++..|...++++-...|.........++.+.+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 334444445555555555554444321 1333344444455555555555556655555555554444445556666666
Q ss_pred CCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHH
Q 005161 274 TDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSH 353 (711)
Q Consensus 274 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 353 (711)
+.+|+.+...+.+.. ..-..+...-.......+++..+..+++.....| +..+.+.......+.|+++.|.+-|..
T Consensus 94 ~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 YADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred cHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 666666666555431 1011111111112223455555555555544222 222333344444566777777777776
Q ss_pred HhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----------------------------HHHHHHH
Q 005161 354 MHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDL----------------------------IAFTVVV 405 (711)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~ 405 (711)
..+.+.-.....|+..+.. .+.++++.|++...+++++|++..+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 6655434445556655533 3556677777777777666543111 1122222
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCH
Q 005161 406 RMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPI 485 (711)
Q Consensus 406 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 485 (711)
..+.+.++++.|.+.+.+|..+.....|+.|...+.-.= ..+++....+-+.-++..+. ....||..++-.||++.-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 334566777777777777755444445555554433211 12334444444444444433 4455666666677777666
Q ss_pred HHHHHHHHH
Q 005161 486 DELSRVFDE 494 (711)
Q Consensus 486 ~~a~~~~~~ 494 (711)
+.|-.++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 666666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-09 Score=90.00 Aligned_cols=205 Identities=15% Similarity=0.034 Sum_probs=174.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
+...+.-.|.+.|++..|..-++++++.+ +.+..+|..+...|-+.|+.+.|.+.|++.....|.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 44455568999999999999999999986 66788899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 97 LSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
+|++++|...|+........+ ...+|..+.-+..+.|+++.|...|++.++... ..+...-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999988765333 346788888888899999999999999998753 355667788888999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh
Q 005161 176 LFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN 226 (711)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 226 (711)
.++.....+. ++..+.-..|+.--+.|+.+.+-++=.++.+. .|...-
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e 242 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEE 242 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 9999988776 88888888888888899999888877777664 444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-08 Score=92.42 Aligned_cols=396 Identities=15% Similarity=0.068 Sum_probs=214.5
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
.+.+..|+++.|+.+|.+.+... ++|...|..-..+|+..|++++|++--.+-.+.+|.....|+.+..++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 46778999999999999999987 56999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHcC---CCCCHHHHHHHHHHhhcc---------
Q 005161 103 AEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA---ELVLVSMREAG---FSPNIVAYNTLMTGYGKV--------- 167 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~--------- 167 (711)
|+..|.+=++..+. |...+..+..++......... -.++..+.... .......|..++..+-+.
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999998876644 555666666665211000000 01111111100 000111222232222111
Q ss_pred -CChHHHHHHHHHHH-----hcC-------CCC---------C-------------hhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 168 -SNMEAAQRLFLSIK-----DVG-------LEP---------D-------------ETTYRSMIEGWGRAGNYREAKWYY 212 (711)
Q Consensus 168 -~~~~~a~~~~~~~~-----~~~-------~~~---------~-------------~~~~~~li~~~~~~g~~~~A~~~~ 212 (711)
..+..+...+.... ..+ ..| . ..-...+.++..+..+++.|.+-|
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11111211111100 000 011 0 011233444555555666666666
Q ss_pred HHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcc
Q 005161 213 KELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFN 292 (711)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 292 (711)
....+.. -+..-++....++...|.+.......+...+.|......++.+...+
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~------------------------ 301 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL------------------------ 301 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH------------------------
Confidence 6665543 23333444455566666666555555555554443332222111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcH-HHHHHHHH
Q 005161 293 LTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNL-HIMCTMID 371 (711)
Q Consensus 293 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 371 (711)
..+...|.+.++++.++..|.+.......|+.. .+....+++....+...-.+ |.. .-...-..
T Consensus 302 ----~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGn 366 (539)
T KOG0548|consen 302 ----ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGN 366 (539)
T ss_pred ----HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHH
Confidence 112234444455555555555544333332211 11222333333333322211 111 11111234
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHH
Q 005161 372 TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLD 451 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 451 (711)
.+.+.|++..|...|.+++... +-|...|....-+|.+.|.+..|+.-.+...+.. ++....|..-..++....+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777776666664 3356666666666667776666666655554331 233344555555555666677
Q ss_pred HHHHHHHHHHhcC
Q 005161 452 KLSYLYYKILKSG 464 (711)
Q Consensus 452 ~a~~~~~~~~~~~ 464 (711)
.|.+.|.+.++..
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-08 Score=96.15 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=64.3
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEE 241 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 241 (711)
+.+..|+++.|...|.+.....+ ++-+.|..-..+|...|++++|++--.+.++. .|+ +.-|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 34456777777777777666544 35666666677777777777776655555543 444 335666666666666777
Q ss_pred HHHHHHHHHHHCCCCChhHHHHHHHHH
Q 005161 242 GAVNTLDDMLNMGCQHSSILGTLLQAY 268 (711)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (711)
+|+..|.+-++..+.+......+..++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 777666666666666555555555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-09 Score=103.00 Aligned_cols=235 Identities=15% Similarity=0.157 Sum_probs=146.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CccHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcC-----CC--
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQH-----GF-TPNII-TLNVMLDIYGKAKLFKRVRKLFSMAKKLG-----LV-- 536 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-- 536 (711)
+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++.+|..+|+.+.... ..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555666666666666666655532 10 12222 22335556667777777777776554322 11
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC
Q 005161 537 -DVISYNTIIAAYGQNKNLESMSSTVQEMQFD-----G-FSVS-LEAYNSMLDAYGKEGQMENFKNVLRRMKET---SCT 605 (711)
Q Consensus 537 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 605 (711)
-..+++.|..+|.+.|++++|...++...+. | ..|. ...++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345666666777777777766665554332 1 1112 223455666777888888888888776541 122
Q ss_pred CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----C-CCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH---
Q 005161 606 FD----HYTYNIMIDIYGEQGWINEVVGVLTELKEC-----G-LRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE--- 671 (711)
Q Consensus 606 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 671 (711)
++ ..+++.|...|...|++++|.++++++++. | ..+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 237788888888888888888888887752 1 1222 45678888888888888888888877542
Q ss_pred -cC-CCCCc-chHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 672 -NG-IEPDK-ITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 672 -~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
.| -.|+. .+|..|...|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 12333 678888888888888888888877664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-09 Score=97.01 Aligned_cols=220 Identities=14% Similarity=-0.002 Sum_probs=136.6
Q ss_pred cCChHHHHHHHHHHhHcCC-CCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDV-QPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
.+..+.++..+.+++.... .|+ ...|..+..+|...|+.++|...|.+..+.+|....+|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455667777777775431 122 3456666777778888888888888888888877888888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 105 EVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
..|+...+.++. +..++..+...+...|++++|.+.++...+.. |+..........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888776544 45667777777778888888888888887764 322211122222344567888888886654322
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC--c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 185 LEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL---GYK--P-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
.|+...+ .+. ....|+...+ ..+..+.+. .+. | ....|..+...+...|+.++|...|+++++..+
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2222222 222 2234554443 233443321 111 1 123566666677777777777777777776554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-09 Score=101.29 Aligned_cols=241 Identities=20% Similarity=0.200 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-C
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKL--------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED-----KV-V 116 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 116 (711)
.+...+...|...|+++.|..++++..+. .+.-....+.+...|...+++.+|..+|++++.. |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666777777777777777776654 1212344555667777777777777777766541 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHhhccCChHHHHHHHHHHHhc---CC
Q 005161 117 P-NLENWLVMLNAYSQQGKLEEAELVLVSMREA-----GF-SPNI-VAYNTLMTGYGKVSNMEAAQRLFLSIKDV---GL 185 (711)
Q Consensus 117 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 185 (711)
| -..+++.+..+|.+.|++++|...+++..+. +. .|.+ ..++.+...+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1234566666677777777776666665532 10 1111 22444555566666666666666544321 11
Q ss_pred CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--Cc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 186 EPD----ETTYRSMIEGWGRAGNYREAKWYYKELKHLG----Y--KP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 186 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
.++ ..+++.|...|...|++++|.++|++....- - .+ ....++.+...|.+.+..++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i- 438 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI- 438 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH-
Confidence 111 2345666666666666666666666554321 0 11 1223344444444444444444444443321
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 255 CQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
.+.....++. -..+|..|+..|.+.|++++|.++.+.+
T Consensus 439 --------------------------~~~~g~~~~~-~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 --------------------------MKLCGPDHPD-VTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred --------------------------HHHhCCCCCc-hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1000001111 2356667777777777777777766554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-08 Score=94.85 Aligned_cols=197 Identities=16% Similarity=0.050 Sum_probs=148.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..|...-..+.+.|+.++|...|+.+++.. +.+...|..+...+...|++++|...|+++.+.+|....+|..++.++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 446666678889999999999999999975 5678899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
..|++++|++.|+...+.++. +. ............++.++|...+.+..... +++...+ .+... ..|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCHH-H
Confidence 999999999999999886643 22 12222223445688999999997765432 3333222 23332 34555443 3
Q ss_pred HHHHHHhc---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005161 176 LFLSIKDV---GL---EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGY 220 (711)
Q Consensus 176 ~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 220 (711)
.++.+.+. .+ .....+|..+...+.+.|++++|...|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44444321 11 12345788999999999999999999999998753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=77.19 Aligned_cols=50 Identities=34% Similarity=0.549 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc
Q 005161 606 FDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGI 655 (711)
Q Consensus 606 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 655 (711)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-11 Score=76.96 Aligned_cols=49 Identities=39% Similarity=0.650 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHH
Q 005161 187 PDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHA 235 (711)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (711)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-07 Score=88.95 Aligned_cols=201 Identities=10% Similarity=-0.018 Sum_probs=109.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHH
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGF-SVSL--EAYNSMLDA 582 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~ 582 (711)
....+...+...|++++|...++...+..+.+...+..+...+...|++++|...+++...... .++. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344455666777777777777777777776666777777777777777777777777665421 1221 234456666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhhcCCHHHHHHHHHHHHH---CCCCCC--hHhHHHHHHHH
Q 005161 583 YGKEGQMENFKNVLRRMKETSC-TFDHYTY-N--IMIDIYGEQGWINEVVGVLTELKE---CGLRPD--LCSYNTLIKAY 653 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~--~~~~~~l~~~~ 653 (711)
+...|++++|..++++...... .+..... + .++..+...|....+.+. +.+.. ...... .........++
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 7777777777777777653211 1111111 1 222233333432222222 11111 000101 11122456667
Q ss_pred hccCChHHHHHHHHHHHHcCCC-------C-CcchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 654 GIAGMVEDAVGLVKEMRENGIE-------P-DKITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 654 ~~~g~~~~A~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
...|+.+.|...++.+...... . ..........++...|++++|.+.+.+....
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888887777642111 1 1222333444556778888888877766543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=95.22 Aligned_cols=220 Identities=16% Similarity=0.104 Sum_probs=169.9
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 139 (711)
+.+.|++.+|.-.|+.....+|....+|-.|......+++-..|+..+++.++.++. |..+...|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 467899999999999999999999999999999999999999999999999998776 8888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH---------HHhhccCChHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 140 LVLVSMREAGFSPNIVAYNTLM---------TGYGKVSNMEAAQRLFLSIKDV-GLEPDETTYRSMIEGWGRAGNYREAK 209 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 209 (711)
..+..-++..++ - .|.... ..+..........++|-++... +..+|...+..|.-.|--.|+|++|.
T Consensus 374 ~~L~~Wi~~~p~-y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-Y--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhCcc-c--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999988765321 0 010000 1222223345556666655443 33467777888888888888888888
Q ss_pred HHHHHHHhcCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 210 WYYKELKHLGYKP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
+.|+.++.. +| |...|+.|...++...+.++|+..|.++++..|.-..+...++-.+...|.+++|.+.|-.++
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888888774 44 456788888888888888888888888888877777777777777888888777777665544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.8e-07 Score=87.14 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
..+...|++++|...+++..+..+ .+...+..+...+...|++++|...+++...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 334444444444444444444321 2233334444444444444444444444433
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-06 Score=76.66 Aligned_cols=298 Identities=12% Similarity=0.064 Sum_probs=159.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE-NWLVMLNAYSQQGK 134 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 134 (711)
+...+...|.+..|+.-|-.+.+.+|.+-.++..-...|...|+..-|+.-+.++++.. |+.. +.......+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhccc
Confidence 34444444555555555555555555444444444455555555555555555544422 3321 12223334445555
Q ss_pred HHHHHHHHHHHHHcCCCCC------------H--HHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 005161 135 LEEAELVLVSMREAGFSPN------------I--VAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWG 200 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~------------~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 200 (711)
++.|..-|+.+++.....+ . ......+..+...|+...|......+.+..+ -|+..|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHH
Confidence 5555555555554321100 0 0112233444556666666666666665432 45555666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh---hHHHHH---------HHHH
Q 005161 201 RAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS---SILGTL---------LQAY 268 (711)
Q Consensus 201 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l---------~~~~ 268 (711)
..|.+..|..-++...+.. ..++.++..+...+...|+.+.++....+.++.+|+.. +.|..+ +...
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655554442 23444555555666666666666666666666666544 112111 2223
Q ss_pred HhcCCCCcHHHHHHHhhhccCCc---chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChh
Q 005161 269 EKAGRTDNVPRILKGSLYQHVLF---NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLA 345 (711)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (711)
...+++.++.+--+..+...|.. ....+..+...+...+++.+|+..-.++..-.+. |..++..-..+|.-...++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHH
Confidence 44566666766666666665542 2233445556666677777777776666544332 3455666666777777777
Q ss_pred hHHHHHHHHhhcC
Q 005161 346 NAVKIYSHMHICD 358 (711)
Q Consensus 346 ~a~~~~~~~~~~~ 358 (711)
.|+.-|+...+.+
T Consensus 359 ~AI~dye~A~e~n 371 (504)
T KOG0624|consen 359 DAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-06 Score=76.46 Aligned_cols=313 Identities=12% Similarity=0.050 Sum_probs=222.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHh
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN-TLMTGY 164 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 164 (711)
-..-+...+...|++..|+.-|-...+.++. +-.++-.....|...|+-..|+.-+.++++. .||-..-. .-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3455778888899999999999988886544 4445556677888899999999999999986 56643322 123467
Q ss_pred hccCChHHHHHHHHHHHhcCCCCC------------hhhH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHH
Q 005161 165 GKVSNMEAAQRLFLSIKDVGLEPD------------ETTY--RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTL 230 (711)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 230 (711)
.+.|.+++|..-|+.+.+..+... ...| ...+..+.-.|+...|......+.+.. .-|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 899999999999999988653111 1112 234556667899999999999999863 3367777778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHH
Q 005161 231 INLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLID 310 (711)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 310 (711)
..+|...|++..|+.-++.+.+...+++..+..+...+...|+.+.++...++.+..+|. .-.+|.. | ..+.
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd-HK~Cf~~----Y---Kklk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD-HKLCFPF----Y---KKLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc-hhhHHHH----H---HHHH
Confidence 889999999999999999999999999999999999999999999999999988876554 1122211 1 1222
Q ss_pred HHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHH---HHHHHHHHHHccCCHHHHHHHHH
Q 005161 311 DAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLH---IMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 311 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
+..+.++.|. .....+++.++++-.+..++........ .+..+-.++...+++.+|++...
T Consensus 268 Kv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 268 KVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 3333333322 1234456666666666666554321222 23344455667788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005161 388 NLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ 427 (711)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 427 (711)
++.+.. +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus 332 evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 332 EVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888752 224777777888888888888898888887543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-08 Score=94.00 Aligned_cols=222 Identities=16% Similarity=0.112 Sum_probs=179.8
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
..+.++|+..+|.-+|+..++.. |-+...|..|...-+..++-..|+..+.++.+.+|.+..+.-.|...|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 45778999999999999999987 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCCh
Q 005161 103 AEEVIRLIREDKVVPNLENWLVML-----------NAYSQQGKLEEAELVLVSMREA-GFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
|++.+...+...++ |..+. ..+.....+....++|-++... +..+|+.+...|.-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999987654322 10000 1111222334455556555543 4347888889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDD 249 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 249 (711)
++|...|+......+ -|..+||.|...+....+.++|...|++.++. +|+ +.+...|.-.|...|.+.+|...|-.
T Consensus 447 draiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999988653 57888999999999999999999999999985 565 44556677788999999999998887
Q ss_pred HHHC
Q 005161 250 MLNM 253 (711)
Q Consensus 250 ~~~~ 253 (711)
++..
T Consensus 524 AL~m 527 (579)
T KOG1125|consen 524 ALSM 527 (579)
T ss_pred HHHh
Confidence 7754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-05 Score=78.00 Aligned_cols=162 Identities=10% Similarity=0.052 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCcHH---HHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005161 506 TLNVMLDIYGKAKLFK---RVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDA 582 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (711)
+.+.|++.|-+.++.. +|+-+++......+.+..+--.+++.|.-.|-+..|.+.|+.+.-..+..|...|. +...
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 3466777888777744 56666666677777788888889999999999999999999887766666655443 3444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHH---HHHHHHHCCCCCChHhHHHHHHHHhccCC
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFD-HYTYNIMIDIYGEQGWINEVVG---VLTELKECGLRPDLCSYNTLIKAYGIAGM 658 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 658 (711)
+...|++..+...++...+- +..+ ..+-..+..+| +.|.+.+..+ +=+++.......-..+-+..+...+..++
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56678888888887776642 1111 11222222333 3455444333 33333321111112344666666777777
Q ss_pred hHHHHHHHHHHH
Q 005161 659 VEDAVGLVKEMR 670 (711)
Q Consensus 659 ~~~A~~~~~~~~ 670 (711)
.+.-...+..|.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 777777777665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-06 Score=81.70 Aligned_cols=215 Identities=11% Similarity=0.000 Sum_probs=142.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
++..+-..+...+..+.|+.+..++++.. +-+..+|.....++...| ++++++..++.+.+.+|.+..+|+....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 33344445556778888888888888765 445567776666666666 5788888888888888888778887766666
Q ss_pred hcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---CCh
Q 005161 96 RLSLY--EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV---SNM 170 (711)
Q Consensus 96 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 170 (711)
+.|.. ++++.+++.+.+.+++ |..+|....-.+.+.|+++++++.++++++.++ .+..+|+....++.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccc
Confidence 66653 6678888888877766 777888877778788888888888888888764 3666777666555443 222
Q ss_pred ----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc
Q 005161 171 ----EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA----GNYREAKWYYKELKHLGYKPNASNLYTLINLHAK 236 (711)
Q Consensus 171 ----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (711)
+.......++....+ -+...|+.+...+... +...+|.+.+.+....+ ..+...+..++..++.
T Consensus 196 ~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 345555555555432 4556676666666552 33455666666655532 1244555566666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.2e-08 Score=89.32 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCH-HHHHHHHHh
Q 005161 240 EEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLI-DDAMKVLGD 318 (711)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 318 (711)
+..|..+|+++....+....+.+.++.++...|++++|.+++++++..++. +..+...++......|+. +.+.+.+..
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 444444444444433333344444444444445555555544444444433 444444455555555554 444455555
Q ss_pred hhhc
Q 005161 319 KRWK 322 (711)
Q Consensus 319 ~~~~ 322 (711)
+...
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 5443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-06 Score=81.68 Aligned_cols=213 Identities=12% Similarity=0.029 Sum_probs=147.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
..+-.++...+..++|+.+...+.+.+|....+|+....++...| .+++++..++.+...+++ +..+|+...-.+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 344445556778899999999999999988889988888888888 579999999999887766 666777666556666
Q ss_pred CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCH--
Q 005161 133 GKL--EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA---GNY-- 205 (711)
Q Consensus 133 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~-- 205 (711)
|+. +++...++.+++.. +.+..+|+...-++.+.|+++++++.++++.+.++ .+..+|+.....+.+. |.+
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 653 67788888888875 34778888888888888899999999999888764 4566676655444433 222
Q ss_pred --HHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHh
Q 005161 206 --REAKWYYKELKHLGYKPNASNLYTLINLHAKY----EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEK 270 (711)
Q Consensus 206 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (711)
++++++..+++.... -|...|+.+...+... +...+|...+.++....+.+...+..++..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 355666656665432 2455666666666552 233456666666666555555555666666653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-05 Score=89.76 Aligned_cols=375 Identities=10% Similarity=-0.014 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 005161 295 SCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYS 374 (711)
Q Consensus 295 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 374 (711)
.+......+...|++.+|............. ..............|+++.+...+..+.......+..........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~--~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLL--RDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHH--HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 3444556666777777776655444222100 01111222334445666666666655422111112222233334445
Q ss_pred ccCCHHHHHHHHHHHHhCCCC------CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---HHHHHHHHHH
Q 005161 375 VMGMFTEAEKLYLNLKSSGIR------LDL--IAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD---AYLYCDMLRI 443 (711)
Q Consensus 375 ~~~~~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~ 443 (711)
..|+++++...+......--. +.. .....+...+...|++++|...++........... ....+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 667777777777766543110 111 11122233445677788887777776442111110 1233445555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC---C--ChhhHHHHHHHHHccCCHHHHHHHHHHHHh----CCCC--c-cHHHHHHHH
Q 005161 444 YQQCGMLDKLSYLYYKILKSGIT---W--NQELYDCVINCCARALPIDELSRVFDEMLQ----HGFT--P-NIITLNVML 511 (711)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~ 511 (711)
+...|+++.|...+.+....... + ...++..+...+...|++++|...+++... .+.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 66777787777777776543111 1 112334445566677777777777776653 1211 1 122233344
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCC---C--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhH-----HHHH
Q 005161 512 DIYGKAKLFKRVRKLFSMAKKLGL---V--DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV-SLEAY-----NSML 580 (711)
Q Consensus 512 ~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~ 580 (711)
..+...|++++|...+........ + ....+..+...+...|+++.|...+.......... ....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 455566777777777766544211 1 23334445556667777777777777664421000 00001 0112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hHhHHHHHHH
Q 005161 581 DAYGKEGQMENFKNVLRRMKETSCTFDH---YTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-LCSYNTLIKA 652 (711)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~ 652 (711)
..+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |..++ ..++..+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3334467777777776665432111111 11234555666777777777777776642 22222 3455566677
Q ss_pred HhccCChHHHHHHHHHHHH
Q 005161 653 YGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 653 ~~~~g~~~~A~~~~~~~~~ 671 (711)
+...|+.++|...+.++.+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00012 Score=74.36 Aligned_cols=226 Identities=11% Similarity=0.079 Sum_probs=152.6
Q ss_pred HhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 26 NKRGCVELGAKWFHMMLECDVQPNVATFGMLMGL--YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKA 103 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (711)
...+++..|.....++.+.. |+.. |..++.+ +.+.|+.++|..+++......+.+..+...+...|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45678999999998888763 5533 3344444 45899999999999988888888888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----------ChHHH
Q 005161 104 EEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS----------NMEAA 173 (711)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a 173 (711)
..+|++..+.. |+..-...+.-+|.|.+.+.+-.++--++-+. ++.+...+=+++..+.... -..-|
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999998865 66777778888899988887766655555553 3344544444444433221 13345
Q ss_pred HHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005161 174 QRLFLSIKDVGLEPDE-TTYRSMIEGWGRAGNYREAKWYYK-ELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDML 251 (711)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (711)
.+.++.+.+.+.+-.. .-...-...+-..|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6666666654311111 111111233446788999998884 33333233344445566777788888888888888888
Q ss_pred HCCCCC
Q 005161 252 NMGCQH 257 (711)
Q Consensus 252 ~~~~~~ 257 (711)
..+++.
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 877664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-07 Score=86.21 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCCh-hhHHHHH
Q 005161 273 RTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHL-ANAVKIY 351 (711)
Q Consensus 273 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~ 351 (711)
.+.+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++.+....++. ++.++..++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466666666665444 2235555666666666666666666666665544433 334444444444444444 3344444
Q ss_pred HHHh
Q 005161 352 SHMH 355 (711)
Q Consensus 352 ~~~~ 355 (711)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-05 Score=88.31 Aligned_cols=377 Identities=13% Similarity=0.051 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
......+..+...|++.+|........+... -..............|+++.+..++..+.......++.........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 5556667777778887777665544322110 01112223344556788888888877764322222222334445556
Q ss_pred HccCChhhHHHHHHHHhhcCC------CCcHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 005161 339 KDSGHLANAVKIYSHMHICDG------KPNLH--IMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDL----IAFTVVVR 406 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 406 (711)
...|+++++...+......-. .+... ....+...+...|++++|...++.........+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 678999999999988754311 11111 2222334556889999999999988763212222 23455666
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C-ChhhHHHH
Q 005161 407 MYVKAGSLKDACAVLETMEKQKDI----EPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS----GIT--W-NQELYDCV 475 (711)
Q Consensus 407 ~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 475 (711)
.+...|++++|...+......... .+.......+...+...|+++.|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 677899999999999887543211 112234556677788999999999999887553 211 1 12234445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC--CCCc--cHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CchhHH-----HHH
Q 005161 476 INCCARALPIDELSRVFDEMLQH--GFTP--NIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VDVISY-----NTI 544 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-----~~l 544 (711)
...+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+........ .....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 55677789999999999887642 1112 233344456677789999999999988755321 111111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 005161 545 IAAYGQNKNLESMSSTVQEMQFDGFSVSL---EAYNSMLDAYGKEGQMENFKNVLRRMKET----SCTFD-HYTYNIMID 616 (711)
Q Consensus 545 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~ 616 (711)
+..+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |..++ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24455688999999988775442211111 11345667788899999999999988752 22222 235566678
Q ss_pred HHhhcCCHHHHHHHHHHHHHC
Q 005161 617 IYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~~ 637 (711)
++...|+.++|...+.+..+.
T Consensus 740 a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999999985
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-07 Score=88.20 Aligned_cols=208 Identities=13% Similarity=-0.005 Sum_probs=92.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLE 555 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (711)
...+...|-...|..+|++.. .|...+.+|...|+..+|..+..+..+ .+|++..|..+++......-++
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHH
Confidence 334444444445555444332 233344445555555555555444444 3445555555544444444444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
+|+++.+..... .-..+.....+.++++++.+.|+...+.+ +-...+|..+..+..+.++++.|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 444444432211 00011111122345555555555444421 2233444444444445555555555555544
Q ss_pred HCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHH
Q 005161 636 ECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWM 704 (711)
Q Consensus 636 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m 704 (711)
. ..|| ...||.+..+|.+.|+-.+|...+++..+.+ .-+...|...+-.....|.+++|.+.++++
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 4 3444 4445555555555555555555555555433 222333433334444555555555544444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-06 Score=89.37 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 005161 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSG-ITWN---QELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNV 509 (711)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 509 (711)
+..|-..|......++.+.|.++.++++..- +.-. ..+|.++++.-...|.-+...++|+++.+.. .....+..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 3445555555555555555555555554331 1101 1245555555555566677777777777642 23445667
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcC
Q 005161 510 MLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV--SLEAYNSMLDAYGKEG 587 (711)
Q Consensus 510 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 587 (711)
|...|.+.+..++|.++++.|.+........|...+..+.+..+-+.|..++.+..+.- |. ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcC
Confidence 77778888888888888888777666777788888888888888788888887777652 22 2344555566667888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHH
Q 005161 588 QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAV 663 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~ 663 (711)
+.+.++.+|+..+.. .+--...|+.+++.-.++|+.+.+..+|++++..++.|. -..|...+.---..|+-+.+.
T Consensus 1615 DaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888765 345667888888888888888888888888888777765 344555554444455543333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00014 Score=69.50 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCcHHHHHHHHH
Q 005161 450 LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTP-NIITLNVMLDIYGKAKLFKRVRKLFS 528 (711)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 528 (711)
.+.....++++......--.-+|..+++...+..-++.|..+|.++.+.+..+ ++...++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566677776665444344577788888888888999999999999877666 6777788887665 678889999999
Q ss_pred HHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 005161 529 MAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVS--LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCT- 605 (711)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 605 (711)
.-.+....++.-....+..+...++-..+..+|++....+.+++ ...|..+++.-..-|+...+.++-++.... ++
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~ 504 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPA 504 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cch
Confidence 88877777777777888888899999999999999988855554 578999999889999999999888877653 22
Q ss_pred ---CCHHHHHHHHHHHhhcCCHH
Q 005161 606 ---FDHYTYNIMIDIYGEQGWIN 625 (711)
Q Consensus 606 ---~~~~~~~~l~~~~~~~g~~~ 625 (711)
+....-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 22223344556665555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00015 Score=69.23 Aligned_cols=186 Identities=11% Similarity=0.131 Sum_probs=129.9
Q ss_pred HHHHHHHHHhhhhcCCCccHhhHHHHHHHHH---ccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 005161 309 IDDAMKVLGDKRWKDTVFEDNLYHLLICSCK---DSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKL 385 (711)
Q Consensus 309 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 385 (711)
.+++..+++.....-..-+..+|..+.+.-- .....+.....+++++......-..+|...+....+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455555555443332223334444433222 2223667777777776553333445677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005161 386 YLNLKSSGIRL-DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG 464 (711)
Q Consensus 386 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (711)
|.++.+.+..+ +..+.++++.-|| .++.+.|.++|+.-.+..+ .+...-...+..+...++-..+..+|++....+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999876655 6777788887665 4688899999987666653 333444566777888899999999999999886
Q ss_pred CCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 465 ITWN--QELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 465 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
+.++ ..+|..++.--+..|+...+.++-+++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5554 46899999999999999999988887764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=75.34 Aligned_cols=159 Identities=12% Similarity=-0.004 Sum_probs=109.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 005161 508 NVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEG 587 (711)
Q Consensus 508 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 587 (711)
..+-..+...|+-+....+........+.+.......+....+.|++..|+..+.+..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4455566667777777777766666666666666667777777777777777777776654 677777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHH
Q 005161 588 QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVK 667 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 667 (711)
+.+.|..-+.+..+. .+-++...+.+...+.-.||++.|..++......+ .-|..+-..+..+....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777764 23345566677777777777777777777776642 2245666667777777777777776655
Q ss_pred HH
Q 005161 668 EM 669 (711)
Q Consensus 668 ~~ 669 (711)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-06 Score=89.13 Aligned_cols=204 Identities=12% Similarity=0.097 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCC-hhhH
Q 005161 118 NLENWLVMLNAYSQQGKLEEAELVLVSMREA-GFSP---NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD-ETTY 192 (711)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 192 (711)
+...|...|......++.++|+++.+++++. +++. -...|.+++..-..-|.-+...++|++..+. -| -..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3456777777777888888888888887753 2222 2345666666656667788888888888773 23 3347
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh--hHHHHHHHHHHh
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS--SILGTLLQAYEK 270 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 270 (711)
..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++++.-|... .++...+....+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77888888888888888888888775 334566788888888888888888888888888777633 788888888889
Q ss_pred cCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCc
Q 005161 271 AGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVF 326 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 326 (711)
.|+.+.+..+|+..+...|. -...|+.+++.-.+.|+.+.+..+|++....+..|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999988888777 67788999998888899888888888888777664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-06 Score=79.84 Aligned_cols=184 Identities=14% Similarity=-0.065 Sum_probs=100.5
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchh---HHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNV---ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCES---AYS 88 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 88 (711)
...+......+...|+++.|...|+.+++.. +.+. ..+..+..++.+.|++++|...++.+.+..|.+.. ++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3444445555555555555555555555432 1111 23344455555555555565555555555554322 344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005161 89 AMITIYTRL--------SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL 160 (711)
Q Consensus 89 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (711)
.+..++... |++++|.+.++.+....+. +...+..+.... .... .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHH------HH--------HHHHHHH
Confidence 444444433 4555555555555544322 111111111000 0000 00 0011245
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLE--PDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
...+.+.|++++|...|++..+..+. .....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788999999999999998875321 23567888999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-06 Score=85.18 Aligned_cols=222 Identities=10% Similarity=0.058 Sum_probs=174.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 005161 394 IRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYD 473 (711)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 473 (711)
.+|-...-..+...+...|-...|+.+++++ ..|..++.+|+..|+..+|..+..+..+ -+|++..|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 3444455566778888899999999999887 2567788889999999999988888777 467888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 474 CVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553 (711)
Q Consensus 474 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 553 (711)
.+.+......-+++|.++.+....+ .-..+.....+.++++++.+.|+...+.++....+|..+.-+..+.++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 8888777777778888888765432 111122223447889999999999888888888899988888899999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 005161 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTE 633 (711)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (711)
++.|.+.|.....-. |-+...||.+-.+|.+.|+..+|...+++..+.+ ..+...|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999888887652 5566789999999999999999999999998876 45556777777788888999999999988
Q ss_pred HHH
Q 005161 634 LKE 636 (711)
Q Consensus 634 ~~~ 636 (711)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 876
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-06 Score=78.88 Aligned_cols=189 Identities=11% Similarity=-0.119 Sum_probs=135.1
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENW 122 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 122 (711)
.....+..+...+.+.|+++.|...|+.+....|.+. .++..+..+|.+.|++++|...++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4556677788888899999999999999999887653 57888999999999999999999999876543221 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHH
Q 005161 123 LVMLNAYSQQ--------GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRS 194 (711)
Q Consensus 123 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (711)
..+..++... |+++.|.+.++.+.+..+ .+...+..+..... . ..... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~------~~~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----L------RNRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----H------HHHHH--------HHHHH
Confidence 5555555554 678889999998887632 22223322221100 0 00000 11224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-Cc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 195 MIEGWGRAGNYREAKWYYKELKHLGY-KP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 195 li~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
+...+.+.|++.+|...+++..+... .| ....+..+..++...|+.++|...++.+....+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56778899999999999999987632 12 356788999999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-06 Score=73.65 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=119.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
+..|...|+++......+.+. .|. . .+...++.+++...++...+.+|.+...|..+..+|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 346889999888755543221 111 1 1223678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAY-SQQGK--LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFL 178 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (711)
+|...|++....++. +...+..+..++ .+.|+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999887755 677777777764 67677 589999999999986 3477888888889999999999999999
Q ss_pred HHHhcCC
Q 005161 179 SIKDVGL 185 (711)
Q Consensus 179 ~~~~~~~ 185 (711)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9988653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-06 Score=72.83 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=112.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
..+-..+.-.|+-+.+..+........+.........+....++|++.+|...+++.....+. |..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHcc
Confidence 445556666777777777777666666655566666777778888888888888877665433 6777777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYK 213 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 213 (711)
+++.|..-|.+..+.. +.++...|.|...+.-.|+.+.|..++......+. .|...-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888887777763 34666777777777777888888888877766442 355566666667777788888777765
Q ss_pred HH
Q 005161 214 EL 215 (711)
Q Consensus 214 ~~ 215 (711)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 44
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00057 Score=72.12 Aligned_cols=220 Identities=16% Similarity=0.076 Sum_probs=125.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV----------- 116 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 116 (711)
.+...+..|+..+...+++++|.++.+...+..|.....|..++..+.+.+++..+..+ .+.+.-..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 44556666666666667777777777766666666555555555566666665555444 22221100
Q ss_pred -------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCCh
Q 005161 117 -------PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE 189 (711)
Q Consensus 117 -------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (711)
-+..++..++.+|.+.|+.++|..+++++++.. +.|+.+.|.+...|+.. +.++|.+++.+....
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 122355556666666677777777777777665 44666667777666666 677777666665542
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--ChhHHHHHHHH
Q 005161 190 TTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ--HSSILGTLLQA 267 (711)
Q Consensus 190 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 267 (711)
+...+++..+.++..++....+. +...+. ++.+.+...-.. ...++..+-..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHHHH
Confidence 44455666666666666554211 122222 222222222110 11344455566
Q ss_pred HHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHH
Q 005161 268 YEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYV 304 (711)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (711)
|...++++++..+++.+++..+. |..+..-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 66777777888888877777666 6666666666665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-06 Score=76.23 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH-HhcCC--HHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY-TRLSL--YEKAE 104 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 104 (711)
.++.+++...++..++.+ +.|...|..+..+|...|+++.|...|+++.+.+|.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 566788888999988876 778999999999999999999999999999999999999999999874 67777 59999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005161 105 EVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN 158 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (711)
+++++..+.++. +..++..+...+...|++++|...|+.+.+.. +|+...+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 999999998866 77888899999999999999999999999875 44554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-05 Score=83.25 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=69.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..|.++..+.|.+++|+.+++.+.+..|....++..++.++.+.+++++|+..+++..+.++. +......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555554433 44444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
+.+.|++++|..+|+++...+ +.+..++..+...+.+.|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555422 22344555555555555555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-06 Score=69.80 Aligned_cols=120 Identities=10% Similarity=-0.075 Sum_probs=89.6
Q ss_pred HHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005161 34 GAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (711)
...+|+..++. .|+. +..+...+...|++++|...|+.+...+|.+..+|..+..++.+.|++++|...|+.....
T Consensus 12 ~~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 12 PEDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566666664 3443 4456677778888888888888888888888888888888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 114 KVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNT 159 (711)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (711)
++. +..++..+..++.+.|++++|...++...+.. +.+...+..
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 654 66777788888888888888888888888763 224444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-06 Score=86.31 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=153.7
Q ss_pred CCchHhHHHHHHHHHhcCChHHHH-HHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGA-KWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAM 90 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 90 (711)
..+..+..-+=.+....|..++|- +++.++.+ ++....+.....+++.-.....+..+....++..|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 344444444445677888877763 44454433 22222333344444444445556666678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
..+..+.|.+++|+.+++...+..+. +...+..++..+.+.+++++|+...++..... +.+......+..++.+.|++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999999987755 66788889999999999999999999999875 34777788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLI 231 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 231 (711)
++|..+|+++...++ -+..++..+...+-..|+.++|...|++..+. ..|....|+..+
T Consensus 171 ~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 999999999998442 34788899999999999999999999999876 233444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-05 Score=65.35 Aligned_cols=186 Identities=11% Similarity=0.072 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhc---C-CCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHH
Q 005161 448 GMLDKLSYLYYKILKS---G-ITWNQEL-YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKR 522 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 522 (711)
.+.++..+++.++... + ..++..+ |..++-+....++.+-|...++++.++- +-+......-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3455555555554321 2 2223222 2333334444555555555555554431 2222221111112333455555
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 523 VRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602 (711)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (711)
|.++++.+.+.+|.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 555555555555555555544444444445544555555554444 3445555555555555555555555555555432
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHH
Q 005161 603 SCTFDHYTYNIMIDIYGEQG---WINEVVGVLTELKE 636 (711)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 636 (711)
.|.++..+..+.+.+.-.| +.+.|.++|.+..+
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1222223333333332222 34445555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-06 Score=70.52 Aligned_cols=106 Identities=9% Similarity=-0.085 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
.+......+...|++++|...|+.++... +.+...|..+..++...|++++|...|+.+...+|....++..+..++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 35567788899999999999999999876 66888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005161 97 LSLYEKAEEVIRLIREDKVVPNLENWLV 124 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (711)
.|++++|...|+......+. +...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~-~~~~~~~ 131 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYA-DASWSEI 131 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 99999999999999886643 3444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-05 Score=82.58 Aligned_cols=220 Identities=12% Similarity=0.095 Sum_probs=155.9
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---------
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC--------- 83 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 83 (711)
.+...+..++..+...+++++|.++.+..++.. +.....|..+.-++.+.++.+.+..+ .+...-+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 347788899999999999999999999877753 33344444444466777777766655 333322222
Q ss_pred ----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005161 84 ----------ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPN 153 (711)
Q Consensus 84 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (711)
..++..++.+|-+.|+.++|..+++++++.++. |..+.+.+...|+.. ++++|.+++.+.+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 267888999999999999999999999998865 889999999999999 999999999988764
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHhhHHHHHH
Q 005161 154 IVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL-GYKPNASNLYTLIN 232 (711)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 232 (711)
+...+++..+.++++++....+ -|...+..+.+ .+... |..--..++..+-.
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHH----------------HHHhhhccchhHHHHHHHHH
Confidence 5566788888888888887432 12222222221 22111 11222334455556
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHH
Q 005161 233 LHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYE 269 (711)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (711)
.|...++++.+..+++.+++..+.+......++..|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 6677777888888888888887777777777777776
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.7e-08 Score=55.19 Aligned_cols=32 Identities=41% Similarity=0.733 Sum_probs=19.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 184 GLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 184 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
|+.||..||++||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.2e-05 Score=64.62 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 005161 402 TVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCAR 481 (711)
Q Consensus 402 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (711)
..-...|++.+++++|++..+... +......-+..+.+..+.+-|...+++|.+.. +..+.+.+..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVK 181 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHH
Confidence 333445667777777777766531 22333333445556666666666666666543 44455555554443
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH-
Q 005161 482 ----ALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLES- 556 (711)
Q Consensus 482 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 556 (711)
.+.+..|.-+|+++.+. .+|+..+.+....++...|++++|..+++.+......++.+...++..-...|...+
T Consensus 182 la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 34567777777777653 467777777777777777888888888877777777777777666666555555433
Q ss_pred HHHHHHHHHH
Q 005161 557 MSSTVQEMQF 566 (711)
Q Consensus 557 a~~~~~~~~~ 566 (711)
..+.+.++..
T Consensus 261 ~~r~l~QLk~ 270 (299)
T KOG3081|consen 261 TERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHh
Confidence 3344444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.3e-05 Score=63.41 Aligned_cols=189 Identities=16% Similarity=0.057 Sum_probs=142.7
Q ss_pred cCChHHHHHHHHHHhH---cC-CCCCHhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 28 RGCVELGAKWFHMMLE---CD-VQPNVAT-FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
..+.++.++++..++. +| ..++..+ |..++-+....|+.+.|...++.+...-|.+..+-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567888888888775 33 4455443 44566667788999999999999998887765555555666778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 103 AEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
|.++++.++..++. |..++-.-+-..-..|+--+|.+-+....+. +..|...|..+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999998855 6666766666666778877888888888776 677999999999999999999999999999886
Q ss_pred cCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 005161 183 VGLEPDETTYRSMIEGWGRA---GNYREAKWYYKELKHLG 219 (711)
Q Consensus 183 ~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~ 219 (711)
..+ .+...+..+...+.-. .+.+-|.++|.+..+..
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 432 2333444555544433 35667888898888763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-05 Score=64.96 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=71.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 005161 125 MLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR--- 201 (711)
Q Consensus 125 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 201 (711)
-+..|...|++++|.+...... +......=+.++.+..+++-|.+.++.|.+- -+-.|.+.|..+|++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3444556666666666555411 2222222233344555666666666666552 233444445555443
Q ss_pred -cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCC
Q 005161 202 -AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGR 273 (711)
Q Consensus 202 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (711)
.+....|.-+|++|-+. ..|++.+.+....++...|++++|..+++.++...+..+.++..++..-...|.
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 23455666666666543 345555666666666666666666666666665555544444444444433333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.1e-05 Score=70.37 Aligned_cols=148 Identities=13% Similarity=0.054 Sum_probs=108.4
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENF 592 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 592 (711)
.+...|++++|+..+..+....|.|+..+......+.+.++.++|.+.++.+.... |........+..++.+.|++.+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 45567888888888888887777788888888888888888888888888887763 33355666777888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHc
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMREN 672 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 672 (711)
..+++..... .+.|+..|..|..+|...|+..+|.... ...|...|+++.|+..+....+.
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 8888887765 4667778888888888888777765433 34556778888888888887764
Q ss_pred CCCCCcchH
Q 005161 673 GIEPDKITY 681 (711)
Q Consensus 673 ~~~p~~~~~ 681 (711)
..++..+|
T Consensus 455 -~~~~~~~~ 462 (484)
T COG4783 455 -VKLGFPDW 462 (484)
T ss_pred -ccCCcHHH
Confidence 33444333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=54.11 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMM 41 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 41 (711)
|+.||..+|+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66677777777777777777777777777665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-06 Score=67.19 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
.....+...+...|++++|...|+.+...+|.....|..+...+...|++++|...++.....++. +...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 334445555556666666666666666666655666666666666666666666666665554432 4445555555666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 005161 131 QQGKLEEAELVLVSMREA 148 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~ 148 (711)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.2e-05 Score=70.01 Aligned_cols=138 Identities=14% Similarity=0.000 Sum_probs=90.5
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
...|+++.|+..++.+....|.+...+.....++.+.++..+|.+.++.+....+. .......+..+|.+.|+..+|..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 35667777777777777777666666667777777777777777777777665433 24455566677777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 141 VLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
+++...... +.|+..|..|..+|...|+..++..-..+. +...|+++.|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 777766653 446677777777777777666665544332 33456667776666666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=66.00 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 71 FAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF 150 (711)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 150 (711)
+.|+.+...+|.+......++..+...|++++|.+.++.+...++. +...+..+...+.+.|+++.|...++...+.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3566667777766667777888888888888888888887776543 66777777888888888888888888877764
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 151 SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
+.+...+..+...+...|+++.|...|+...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4466677777778888888888888888877743
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=5e-05 Score=62.76 Aligned_cols=115 Identities=18% Similarity=0.119 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENWLVMLNAYSQQGKLEE 137 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 137 (711)
.++...+...++.+....+.. ..+...+...+...|++++|...|+.+....+.|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444455555555555444433 223333445555555555555555555444322211 122334444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 005161 138 AELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (711)
|...++..... ......+.....++.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555443222 12333344444555555555555555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.5e-05 Score=62.51 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=63.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
..|..++..+ ..++...+...++.+.+...... ......+...+...|++++|...|+++....+.+ ..+...+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3444444444 25555555555666655431111 1122223344555666666666666666554332 2344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVS 144 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 144 (711)
..++...|++++|+..++...... .....+......+.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666666666665432222 2233444555566666666666665554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.1e-05 Score=59.52 Aligned_cols=98 Identities=8% Similarity=-0.101 Sum_probs=84.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
....-.+...+...|++++|..+|+.+...+|.+..-|..|..++...|++++|+..|......++. ++.++-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 3344456666778999999999999999999998999999999999999999999999998887764 777888888999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 005161 130 SQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~ 148 (711)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.6e-05 Score=71.47 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
......++..+...++++.|+++++++...+ |+ ....++..+...++-.+|.+++++.++.. +.+..........
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566667777777888888888877755 33 33346666666777777888777777653 3456666666677
Q ss_pred hhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 164 YGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
+.+.++++.|+.+.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+.-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 7778888888888888777532 34447888888888888888888777776543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0056 Score=60.74 Aligned_cols=156 Identities=16% Similarity=0.170 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhc-CCCCcHHHHHHHHHHHHccCCHHHHHH
Q 005161 306 HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHIC-DGKPNLHIMCTMIDTYSVMGMFTEAEK 384 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 384 (711)
-|++++|.+++-++..++.. +..+.+.|++-...++++.--.. +-..-..+|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrDLA---------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA---------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhhh---------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555544332 44444555555555544331100 001112355666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005161 385 LYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG 464 (711)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (711)
.|..-... ...+.++.+..++++-..+-..+ +.+......+...+...|.-++|.+.+-+.-..
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p- 881 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP- 881 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccCc-
Confidence 65543321 22445555555555544444444 234444555566666666666666544332111
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 005161 465 ITWNQELYDCVINCCARALPIDELSRVFDE 494 (711)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 494 (711)
...+..|...+++.+|.++-+.
T Consensus 882 --------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 --------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1234455556666666655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=8e-05 Score=71.30 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=109.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+......|+..+...++++.|..+|+++.+.+|. ....+++.+...++..+|.+++.+.+...+. +...+..-...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444456777777889999999999999998864 5667888998999999999999998876654 66777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV 183 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (711)
|.+.++++.|..+.+++.+.. +.+-.+|..|+.+|.+.|+++.|+..++.++-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999974 345669999999999999999999999988753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0018 Score=60.08 Aligned_cols=263 Identities=14% Similarity=0.030 Sum_probs=166.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL 99 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (711)
..-..+....++..|+..+..+++.. +.+..-|..-...+...|++++|..-.+.-.+..+..........+++...+.
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 33445666778888999999999876 33455666666777778888888877766666555433344444444444444
Q ss_pred HHHHHHHHH---------------HHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005161 100 YEKAEEVIR---------------LIREDKV-VPNLENWLVM-LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMT 162 (711)
Q Consensus 100 ~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (711)
..+|.+.++ ....... .|...++..+ ..++.-.|++++|..+--..++.. ....+..+++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhc
Confidence 444443333 2222211 1333344333 345666799999988888888763 2233334443
Q ss_pred --HhhccCChHHHHHHHHHHHhcCCCCChhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCccH
Q 005161 163 --GYGKVSNMEAAQRLFLSIKDVGLEPDETT-------------YRSMIEGWGRAGNYREAKWYYKELKHLG---YKPNA 224 (711)
Q Consensus 163 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 224 (711)
++.-.++.+.+...|++....+ ||-.. +..-..-..++|++..|.+.|.+.+..+ ..|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 3345678888988888887754 33222 1112333456788888888888887652 44556
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhcc
Q 005161 225 SNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQH 288 (711)
Q Consensus 225 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (711)
..|.....+..+.|+..+|+.-.+...+.++.....+..-+.++...+++++|.+-++.+....
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777777888888888888888887665555566666677777777888887777766543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.01 Score=55.91 Aligned_cols=147 Identities=10% Similarity=0.136 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 469 QELYDCVINCCARALPIDELSRVFDEMLQHG-FTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAA 547 (711)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 547 (711)
..+|...++...+..-.+.|..+|-++.+.+ +.+++..+++++..++ .|+..-|..+|+.-....+.++.-....+..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3456666777777777788888888888777 5567777777776554 5677778888876666655555555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 548 YGQNKNLESMSSTVQEMQFDGFSVS--LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 548 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
+...++-+.|..+|+..+.. +..+ ...|..+++.-..-|+...+..+-+++.+. .|...+.......|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 77778878888888754433 1222 457777888777888888888877777763 455544444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.011 Score=55.92 Aligned_cols=268 Identities=15% Similarity=0.120 Sum_probs=142.2
Q ss_pred CcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCC----ccH
Q 005161 432 PDAYLYCDMLRIYQQCG--MLDKLSYLYYKILKSGITWNQEL-YDCVINCCARALPIDELSRVFDEMLQHGFT----PNI 504 (711)
Q Consensus 432 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 504 (711)
|.......++....-.. ...--.++++.....-+.|+... ...+...+.+ +.+++..+-+.+....+. .-.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444433221 22223333344444444554332 2333333333 445555554444432111 123
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHH------HHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChh
Q 005161 505 ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISY------NTIIAAYG----QNKNLESMSSTVQEMQFDGFSVSLE 574 (711)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~ 574 (711)
.++..++....+.++...|.+.+..+....|.....- ..+-+..+ ...+...=+.+|+.....++..- .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-Q 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-Q 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-H
Confidence 4566677777788888888888887776665322111 11112222 11122233445555554432211 1
Q ss_pred hHHHH---HHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHhhc---CCHHHHHHHHHHHHHCCCCCC-
Q 005161 575 AYNSM---LDAYGKEGQ-MENFKNVLRRMKETSCTFDHYTYNIMI----DIYGEQ---GWINEVVGVLTELKECGLRPD- 642 (711)
Q Consensus 575 ~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~~~~~~~~p~- 642 (711)
....+ ..-+.+.|. -++|..+++.+.+-. +-|...-|... .+|... ..+.+-..+-+-+.+.|+.|-
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 11122 233455565 788888888887631 23333322222 223221 223444444444556777763
Q ss_pred ---hHhHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 643 ---LCSYNTLIKA--YGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 643 ---~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
...-|.|..+ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|.++++.+.
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3345666544 5578999998888777777 88988999999999999999999999887653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=56.90 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=42.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP--NLENWLVMLNAY 129 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 129 (711)
.+...+.+.|++++|...|..+.+..+.+ ..++..++.++.+.|++++|...|+.+....+.. ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 34444444455555555555544443322 2334444455555555555555555444322111 123344444444
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 005161 130 SQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~ 148 (711)
.+.|+.++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4455555555555554444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00073 Score=55.00 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=92.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHhcC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV-CESAYSAMITIYTRLS 98 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 98 (711)
.+..+..+.=|++...+-..+-.. .-|+..-...|...+.+.|+..+|...|......-.. +......+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 334444444444444333332222 2466666667777778888888888888777653332 2456667777777788
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVV-PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
++..|...++++-+.++. -++.+...+.+.|...|++..|...|+.....- |+...-......+.+.|+.+++..-+
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 888888888777654421 123345566777777888888888888777753 34333333334455666655554443
Q ss_pred H
Q 005161 178 L 178 (711)
Q Consensus 178 ~ 178 (711)
.
T Consensus 217 ~ 217 (251)
T COG4700 217 V 217 (251)
T ss_pred H
Confidence 3
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00057 Score=63.17 Aligned_cols=89 Identities=10% Similarity=-0.028 Sum_probs=63.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccC
Q 005161 582 AYGKEGQMENFKNVLRRMKET---SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAG 657 (711)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 657 (711)
-..+.|.+..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888752 3344555666666777888888888888888765 3443 344555556677788
Q ss_pred ChHHHHHHHHHHHHc
Q 005161 658 MVEDAVGLVKEMREN 672 (711)
Q Consensus 658 ~~~~A~~~~~~~~~~ 672 (711)
+|++|++-+++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888898888888763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.015 Score=57.84 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCchhHHHH-------HHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLG-LVCESAYSA-------MITIYTRLSLYEKAEEVIRLIREDKVVPN 118 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (711)
.|.+..|..+...-...-.++-|+..|-+...-. ..-..-... -..+-.--|.+++|.++|-++...+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5888888888877666677888888776553311 100000000 0111222367777777776665433
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 005161 119 LENWLVMLNAYSQQGKLEEAELVLVSMREA-GFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIE 197 (711)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 197 (711)
..+..+.+.|++-...+++..--.. .-+.-...++.+...++....++.|.+.|..-.. ....+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 2355566667766555544321110 0001134566666666666666666666654322 122345
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 005161 198 GWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 198 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (711)
++.+...+++-..+...+.+ +...+-.+..++.+.|--++|.+.+
T Consensus 831 cly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 55555555555444444332 3333444555555555555555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=46.89 Aligned_cols=33 Identities=36% Similarity=0.648 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 005161 191 TYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN 223 (711)
Q Consensus 191 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 223 (711)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677778888888888888888888877777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00029 Score=56.17 Aligned_cols=101 Identities=15% Similarity=-0.006 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQ--PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
.++......+.+.|++++|.+.|..+++.... .....+..+..++.+.|+++.|...|+.+....|.. ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999999986421 113466678899999999999999999999877664 4678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
..++.+.|++++|...++++....+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999887644
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=55.36 Aligned_cols=89 Identities=25% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
+...+...|++++|...++.+++.. +.+...+..+..++...|+++.|.+.|.......+....++..++.++...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444455555555555444432 222233344444444444455555555444444444334444444444444444
Q ss_pred HHHHHHHHHH
Q 005161 101 EKAEEVIRLI 110 (711)
Q Consensus 101 ~~a~~~~~~~ 110 (711)
++|...++..
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0031 Score=56.97 Aligned_cols=74 Identities=8% Similarity=-0.049 Sum_probs=51.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCES---AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
.....+.+.|+++.|.+.|+.+....|.+.. +...++.+|.+.+++++|...++++.+..+......+...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3444556778899999999988888877643 4467778888888898888888888876544333333333333
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=46.68 Aligned_cols=32 Identities=63% Similarity=0.862 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=54.97 Aligned_cols=93 Identities=27% Similarity=0.184 Sum_probs=51.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
..+...+...|++++|...|..+.+..+....++..+..++...+++++|.+.++......+. +..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 334445555666666666666666555554455555666666666666666666655544322 2234445555555555
Q ss_pred CHHHHHHHHHHHHH
Q 005161 134 KLEEAELVLVSMRE 147 (711)
Q Consensus 134 ~~~~a~~~~~~~~~ 147 (711)
+++.|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55655555555544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=57.82 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
.|+++.|+.+|+++.+..+.+ ...+..++.+|.+.|++++|.++++. .+.+.. +......+..++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 355566666666665555532 23344456666666666666666655 222211 22333344555666666666666
Q ss_pred HHHH
Q 005161 141 VLVS 144 (711)
Q Consensus 141 ~~~~ 144 (711)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00034 Score=67.61 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=66.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
...+...|+++.|++.|..+++.. +.+...|..+..+|.+.|++++|+..++++.+.+|....+|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 345666777777777777777764 4456666667777777777777777777777777776777777777777777777
Q ss_pred HHHHHHHHHHhCC
Q 005161 102 KAEEVIRLIREDK 114 (711)
Q Consensus 102 ~a~~~~~~~~~~~ 114 (711)
+|+..|+..+..+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.1e-05 Score=45.66 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 680 TYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+|+.++.+|.+.|+++.|.+++++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.2e-05 Score=45.57 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 005161 190 TTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP 222 (711)
Q Consensus 190 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 222 (711)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00082 Score=59.67 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=44.7
Q ss_pred HhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005161 26 NKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEE 105 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (711)
.+.+++.+|+..|..+++.. +.|...|.....+|++.|.++.|.+-.+.....+|....+|..|..+|...|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34455555555555555543 33444444455555555555555555555555555545555555555555555555555
Q ss_pred HHHHHHh
Q 005161 106 VIRLIRE 112 (711)
Q Consensus 106 ~~~~~~~ 112 (711)
.|++.+.
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 5555444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0011 Score=51.62 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=67.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---chhHHHHHHHHHH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV---CESAYSAMITIYT 95 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 95 (711)
...++-..|+.++|+.+|+..++.|.... ...+..+...|...|++++|..+|+......|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677888888888888887765443 334555666777788888888888877776555 3334444555677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..|+.++|++.+-.... ++...|..-|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888887777765544 23334544454443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00039 Score=56.00 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=87.4
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+.....++-..+...|++++|..+|+.+..-+ +-+..-|..|.-++-..|++++|+..|......+|.++.++..+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35566677778889999999999999999875 45667777888888899999999999999999999989999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 005161 94 YTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~ 113 (711)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00059 Score=58.43 Aligned_cols=112 Identities=15% Similarity=0.003 Sum_probs=55.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 53 FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
+..+...+...|++++|...|+++.+..+.+ ...+..++.++.+.|++++|...+++.....+. +...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3344444444555555555555554433221 234445555555555555555555554443322 233333444444
Q ss_pred HhcCC--------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 130 SQQGK--------------LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 130 ~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
...|+ +++|.+++++..+.+ |+ .|..++..+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence 44443 577888888877753 22 25555555544443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00024 Score=62.94 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=62.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCH
Q 005161 546 AAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFD-HYTYNIMIDIYGEQGWI 624 (711)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 624 (711)
.-..+.+++.+|+..|.+.++.. |.|...|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34556677777777777776653 445555566666777777777777777766652 333 23666777777777777
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHH
Q 005161 625 NEVVGVLTELKECGLRPDLCSYNT 648 (711)
Q Consensus 625 ~~A~~~~~~~~~~~~~p~~~~~~~ 648 (711)
++|++.|++.++ +.|+..+|..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHH
Confidence 777777777766 5666555433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0098 Score=53.81 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE--NWLVMLNAYSQQGKLEEAELVLVSMREAGFS 151 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (711)
...+......+...|++++|.+.|+.+....+.+... +...++.++.+.+++++|...+++.++..+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3445566777788899999999999988866543221 2245677888899999999999999887543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.031 Score=52.91 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=68.0
Q ss_pred HccCCHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhc
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVC------ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA--YSQQ 132 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 132 (711)
-+++++.+|+++|.++.+..... +..-+.++++|..+ +.+.....+....+.... . .|..+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~-s--~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGK-S--AYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHHHh
Confidence 46778888888888876544332 12234566666553 444444444444443221 1 23232222 3367
Q ss_pred CCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC----CCChhhHHH
Q 005161 133 GKLEEAELVLVSMREA--GFSP------------NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL----EPDETTYRS 194 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 194 (711)
+.+.+|.+.+..-.+. +..| |-..-+..+.++...|++.+++.+++++...-+ .-++.+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7888887777766543 2111 111123344455556666666666655543322 234555554
Q ss_pred HHHHH
Q 005161 195 MIEGW 199 (711)
Q Consensus 195 li~~~ 199 (711)
++-.+
T Consensus 173 ~vlml 177 (549)
T PF07079_consen 173 AVLML 177 (549)
T ss_pred HHHHH
Confidence 44333
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0067 Score=49.64 Aligned_cols=131 Identities=10% Similarity=0.000 Sum_probs=83.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS---CTFDHYTYN 612 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 612 (711)
|+......+..+....|+..+|...|++...--+.-|......+.++....++...|...++.+.+.+ -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44445556677777777777777777777655455566666677777777777777777777776532 2233 233
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
.+...+...|+..+|...|+..++ ..|+...-......+.++|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 455667777777777777777776 35665554445555666676666555444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=7e-05 Score=54.89 Aligned_cols=81 Identities=25% Similarity=0.237 Sum_probs=46.8
Q ss_pred cCChHHHHHHHHHHhHcCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQ-PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
+|+++.|+.+|+.+++.... ++...+..+..+|.+.|++++|..+++. .+.++.+......++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666777777777665421 1334444466666677777777777766 433333334444556667777777777766
Q ss_pred HHH
Q 005161 107 IRL 109 (711)
Q Consensus 107 ~~~ 109 (711)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00066 Score=65.62 Aligned_cols=92 Identities=12% Similarity=-0.059 Sum_probs=76.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (711)
...+...|+++.|+..|.++.+.+|.....|..+..+|...|++++|+..++.++..++. +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 345567789999999999999888888888888888899999999999999888876654 5667778888888889999
Q ss_pred HHHHHHHHHHHcC
Q 005161 137 EAELVLVSMREAG 149 (711)
Q Consensus 137 ~a~~~~~~~~~~~ 149 (711)
+|...|++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999888888864
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00075 Score=62.77 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=56.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDI-YGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYG 549 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (711)
+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|..+|+...+..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555322 1112222222222 122334444555555555554444455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 550 QNKNLESMSSTVQEMQFDGFSVSL---EAYNSMLDAYGKEGQMENFKNVLRRMKE 601 (711)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (711)
..++.+.|..+|++.... ++++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555554433 12111 2444444444444555555555444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00083 Score=64.80 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 118 NLENWLVMLNAYSQQGKLEEAELVLVSMREAG--FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
+.......+..+....+++.+..++-++.... ...-+.+..++++.|.+.|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 55556666777777777888888888777641 1122344568888888888888888888888888888899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
+..+.+.|++..|.++...|...+...++.|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 998889999988888888887776666666666656555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0021 Score=64.98 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchH
Q 005161 605 TFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITY 681 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 681 (711)
+.++..+..+.-.....|++++|...++++++. .|+...|..+..+|...|++++|.+.+++... +.|...+|
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 334556666666666678888888888888874 56777788888888888888888888888876 66765554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00079 Score=64.96 Aligned_cols=124 Identities=8% Similarity=0.022 Sum_probs=101.1
Q ss_pred CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 005161 498 HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL---VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLE 574 (711)
Q Consensus 498 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 574 (711)
.+.+.+...+..+++.+....+.+.+..++.+.+.... .-+.+..++++.|...|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 44566777888888888888889999998888877643 245566789999999999999999999988899999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 005161 575 AYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ 621 (711)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (711)
+++.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998887666666777776666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.04 Score=51.11 Aligned_cols=294 Identities=13% Similarity=0.065 Sum_probs=172.1
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHH--HHHH
Q 005161 86 AYSAMITIYT--RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY--SQQGKLEEAELVLVSMREAGFSPNIV--AYNT 159 (711)
Q Consensus 86 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 159 (711)
.|..|..++. -.|+-..|.+.-.+..+. +..|...+..++.+- .-.|+++.|.+-|+.|... |... ....
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 4555554443 446777777766654321 223444455555433 3469999999999999873 3322 2223
Q ss_pred HHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHhh--HHHHHHH---
Q 005161 160 LMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG-YKPNASN--LYTLINL--- 233 (711)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~--- 233 (711)
|.-.--+.|+.+.|.+.-++.-.... .-...+...+...+..|+++.|+++++.-++.. +.++..- -..|+.+
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 33333467888888888887766432 234567788888999999999999998776542 3333221 1122221
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHH
Q 005161 234 HAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM 313 (711)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 313 (711)
-.-.-|...|...-.+..+..+.-.+....-...+.+.|+..++-++++.+-...|+|+.. ..|.....-+.++
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHH
Confidence 1122356677777777777666666666777788888888888888888888877776632 2333322223333
Q ss_pred HHHHhhhhc-CCCc-cHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHH-ccCCHHHHHHHHHHHH
Q 005161 314 KVLGDKRWK-DTVF-EDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYS-VMGMFTEAEKLYLNLK 390 (711)
Q Consensus 314 ~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 390 (711)
+-+++.... ..+| +..+...+..+....|++..|..--+..... .|....|..|.+.-. ..||-.++...+.+..
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 333322211 1122 2234445555666666666666555555442 455666666655543 3366666666666665
Q ss_pred hC
Q 005161 391 SS 392 (711)
Q Consensus 391 ~~ 392 (711)
+.
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 54
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=56.12 Aligned_cols=97 Identities=15% Similarity=-0.094 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
..|..+...+...|++++|+..|+.+....+.+ ..++..+..+|...|++++|+..++......+. ...++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 334444444555566666666666655443322 235555566666666666666666655543322 2233434444
Q ss_pred HHH-------hcCCHH-------HHHHHHHHHHHc
Q 005161 128 AYS-------QQGKLE-------EAELVLVSMREA 148 (711)
Q Consensus 128 ~~~-------~~~~~~-------~a~~~~~~~~~~ 148 (711)
.+. ..|+++ +|..++++....
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 444 444433 556666666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00083 Score=62.45 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE----TTYRSMIEGWGRAGNYREAKWYY 212 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 212 (711)
.|..+|+...+. ++.+...|...+..+.+.++.+.|+.+|++.... + +.. ..|...+..=.+.|+.+....+.
T Consensus 54 ~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 54 RARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444433 2334444444444444444444444444444332 1 111 23444444444444444444444
Q ss_pred HHHHh
Q 005161 213 KELKH 217 (711)
Q Consensus 213 ~~~~~ 217 (711)
+++.+
T Consensus 131 ~R~~~ 135 (280)
T PF05843_consen 131 KRAEE 135 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0069 Score=53.37 Aligned_cols=59 Identities=15% Similarity=-0.049 Sum_probs=37.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKV 115 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 115 (711)
...+...|++.+|...|+.+....|.+ ..+...++.++.+.|+++.|...++.+....+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 334456677777777777777766654 45666777777777777777777777666543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00091 Score=57.07 Aligned_cols=111 Identities=11% Similarity=-0.111 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 68 EAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP--NLENWLVMLNAYSQQGKLEEAELVLV 143 (711)
Q Consensus 68 ~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 143 (711)
.+...+..+.+..... ...|..++..+...|++++|+..|+........+ ...++..+...+...|++++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444443333332 4567788888888899999999998887654332 23467788888888999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHhh-------ccCChHHHHHHHHH
Q 005161 144 SMREAGFSPNIVAYNTLMTGYG-------KVSNMEAAQRLFLS 179 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~ 179 (711)
...+.. +.....++.+...+. ..|+++.|...+++
T Consensus 97 ~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 97 QALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888763 334555666666666 77787765555543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=50.33 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=35.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
+.|++++|.+.|+.+...+|.+..++..++.+|.+.|++++|.++++.+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667777777777776666666666667777777777777777776666544
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0026 Score=54.51 Aligned_cols=115 Identities=17% Similarity=0.073 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34567777777778888888888887765443322 3566677777777888888888888777753 23455566666
Q ss_pred HHhhccCC--------------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 162 TGYGKVSN--------------MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 162 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
.++...|+ +++|.+.+++....+ |+ .|..++.-+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcC
Confidence 66666665 567777777777632 22 2444444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0002 Score=49.41 Aligned_cols=58 Identities=19% Similarity=0.051 Sum_probs=36.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
...+.+.|++++|...|+.+.+..|.+..++..+..++...|++++|...|+.+.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455566666666666666666666666666666666666666666666666665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00025 Score=49.65 Aligned_cols=65 Identities=25% Similarity=0.180 Sum_probs=46.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIRED 113 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 113 (711)
+...|..+...+...|++++|+..|.+..+.+|....+|..+..+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34566666777777777777777777777777776777777777777777 577777777766553
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0035 Score=56.23 Aligned_cols=131 Identities=18% Similarity=0.050 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ---GKLEEAELV 141 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~ 141 (711)
+++....-++.-...+|.+...|..|..+|...|++..|...|....+.... |+..+..+..++... ..-.++.++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3555555666677788988999999999999999999999999998776543 666776766666543 335678899
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 199 (711)
|+++++.+ +.|+.+...|...+...|++.+|...|+.|.+.. |....+..+|...
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~ 270 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIERS 270 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHHH
Confidence 99999875 3467777777788899999999999999999864 4555666666543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.038 Score=48.23 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------------------hhH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------------------ESA-YSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..|...+.++.+....++|..-+....+.+.++ +.+ ...-..+....|+..+.+.-+..++
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 345556777888888888887777665544321 000 1111223333444444443333322
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhh
Q 005161 112 EDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETT 191 (711)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (711)
. ....++..+-.....+.-.+.|+.=. ..+.+.++..+.-.|.+.-...++.++.+...+.++..
T Consensus 150 ~--------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 150 T--------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred H--------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 1 01112222222222234444444322 23556677777777888888888888888776667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHH-----HHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHH
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLY-----TLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQ 266 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 266 (711)
...|.+.-.+.|+.+.|..+|++..+..-..+..+++ .....+.-.+++..|...+.+++..++......+.-+-
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 7788888888888888888888766543233333332 23334455566666666666666666555444444444
Q ss_pred HHHhcCCCCcHHHHHHHhhhcc
Q 005161 267 AYEKAGRTDNVPRILKGSLYQH 288 (711)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~ 288 (711)
++...|+..+|.+.++.+....
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4444455555555555444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.9e-05 Score=41.86 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 680 TYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
+|+.++++|.+.|++++|.+++++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 455555666666666666666666655553
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0046 Score=57.89 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=61.6
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC---C--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc--
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQ---P--NVATFGMLMGLYKKSWNVEEAEFAFNQMRKL----GLVC-- 83 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-- 83 (711)
...|..-...|-..|++++|.+.|..+.+.... + -...|.....+| +.+++++|...+.+..+. |-..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 334555555566667777777776665442111 0 111222223333 333666666666655432 1111
Q ss_pred hhHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 84 ESAYSAMITIYTRL-SLYEKAEEVIRLIRE----DKV-VPNLENWLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 84 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
...+..+..+|... |++++|++.|++..+ .+. ..-..++..++..+.+.|++++|.++|+++...
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 23455555555555 566666666655433 110 001223445555555666666666666655543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00089 Score=49.70 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccC--------ChHHHHHHHHHHHhcCCCCChhhHHH
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVS--------NMEAAQRLFLSIKDVGLEPDETTYRS 194 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (711)
..|..+...+++...--+|+.+.+.|+ -|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555666666666666666666 566666666666554332 23334455555555555555555555
Q ss_pred HHHHHH
Q 005161 195 MIEGWG 200 (711)
Q Consensus 195 li~~~~ 200 (711)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0033 Score=48.91 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcc--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---ChhHHHHHHHHHHh
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPN--ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ---HSSILGTLLQAYEK 270 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 270 (711)
..++-..|+.++|..+|++....|.... ...+..+...+...|++++|..++++.....|. +..+..-+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4445566777777777777777665543 234555556666667777777777766665554 22333334445555
Q ss_pred cCCCCcHHHHHHHhh
Q 005161 271 AGRTDNVPRILKGSL 285 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~ 285 (711)
.|+.++|.+.+-..+
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666655554433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=48.73 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCCcchHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECGL-RPDLCSYNTLIKAYGIAG--------MVEDAVGLVKEMRENGIEPDKITYTN 683 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 683 (711)
..|..|...+++.....+|+.++..|+ .|+..+|+.++.+..+.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777776665432 13345677788887778888888888
Q ss_pred HHHHHHh
Q 005161 684 MITALQR 690 (711)
Q Consensus 684 l~~~~~~ 690 (711)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7777654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0062 Score=54.69 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---CChHHHHHHH
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV---SNMEAAQRLF 177 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 177 (711)
+....-++.-+..++. |...|..+...|.+.|+++.|..-|....+.. ++++..+..+..++... ....++..+|
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3333445555566655 78899999999999999999999999999874 45777777777766433 3577889999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
+++..... -++.+...|...+...|++.+|...++.|.+..
T Consensus 217 ~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99998653 566777778888999999999999999999873
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.013 Score=51.58 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...+...+..+...|++.+|.+.|+.+....+. ....+...++.++.+.|+++.|...++++++.-+.....-+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 456667778888999999999999999876433 123556678888999999999999999998874332222222222
Q ss_pred HHhhcc-------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHH
Q 005161 162 TGYGKV-------------SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLY 228 (711)
Q Consensus 162 ~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (711)
.+.+.. +...+|... +..++.-|-......+|...+..+.+. =...-.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHH
Confidence 222111 111122222 334444444444555555555444332 011122
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 229 TLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
.+...|.+.|.+..|..-++.+++.-|...
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 356677777788878777777777766554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=41.50 Aligned_cols=29 Identities=34% Similarity=0.705 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 191 TYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 191 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0058 Score=61.92 Aligned_cols=144 Identities=12% Similarity=0.082 Sum_probs=98.5
Q ss_pred CCccHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC--------CHHHHHHHHHHHHH
Q 005161 500 FTPNIITLNVMLDIYGK-----AKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNK--------NLESMSSTVQEMQF 566 (711)
Q Consensus 500 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 566 (711)
.+.+...|...+.+... .++.+.|..+|+++.+..|.....+..+..++.... +...+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35556666666655322 233667888888888888777777766655543321 12233333333333
Q ss_pred C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHh
Q 005161 567 D-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCS 645 (711)
Q Consensus 567 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 645 (711)
. ..+.+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++... +.|...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 2 23445567777766677789999999999999985 47888899999999999999999999999987 5676555
Q ss_pred HH
Q 005161 646 YN 647 (711)
Q Consensus 646 ~~ 647 (711)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0095 Score=55.81 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcc-CChHHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----ccH
Q 005161 156 AYNTLMTGYGKV-SNMEAAQRLFLSIKDV----GL-EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK-----PNA 224 (711)
Q Consensus 156 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 224 (711)
.+..+...|-.. |+++.|.+.|++..+. +- ..-...+..+...+.+.|++++|.++|++....... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455566666 7788888777766442 10 001223456667777888888888888877654322 112
Q ss_pred h-hHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 225 S-NLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 225 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
. .+...+-++...||...|...++......|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1 233344456667788888888887776654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00036 Score=48.84 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccC-ChHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAG-MVEDAVGLVKEMR 670 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 670 (711)
.|..+...+...|++++|+..|++.++. .|+ ...|..+..+|...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444442 232 334444444444444 3444444444443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00031 Score=48.99 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=53.5
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
+...|++++|.+.|+.+++.. +.+...+..+..+|.+.|++++|..+++++...+|.++..+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 357899999999999999886 5588888889999999999999999999999999875444433
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.092 Score=49.80 Aligned_cols=142 Identities=8% Similarity=0.089 Sum_probs=93.6
Q ss_pred HHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005161 38 FHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP 117 (711)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 117 (711)
+++=++.+ +.|+..|-.|+.-|-.+|..++-.++++.+...-|..+.+|...+.+-...+++.....+|.+.+.....
T Consensus 31 LRerIkdN-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 31 LRERIKDN-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHhhcC-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 33333433 7789999999999999999999999999998888777889999999888899999999999988776544
Q ss_pred CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHhh---------ccCChHHHHHHHHHH
Q 005161 118 NLENWLVMLNAYSQQGK------LEEAELVLVSMRE-AGFSP-NIVAYNTLMTGYG---------KVSNMEAAQRLFLSI 180 (711)
Q Consensus 118 ~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~ 180 (711)
...|...++--.+.+. -....+.++-.+. .+++| +...|+..+..+- .+.+.+..++.|.++
T Consensus 109 -ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 109 -LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred -HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 4455555543333221 1112344444333 33443 3445555554321 123455666677777
Q ss_pred Hh
Q 005161 181 KD 182 (711)
Q Consensus 181 ~~ 182 (711)
..
T Consensus 188 l~ 189 (660)
T COG5107 188 LQ 189 (660)
T ss_pred Hc
Confidence 65
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00073 Score=46.53 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=53.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC 83 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 83 (711)
+...+.+.|++++|...|+.+++.. +-+...+..+..++...|++++|...|+.+.+.+|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567889999999999999999986 5578888889999999999999999999999988764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=61.00 Aligned_cols=234 Identities=17% Similarity=0.094 Sum_probs=126.4
Q ss_pred hHhHHHHH--HHHHhcCChHHHHHHHHHHhHcCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHH--HcCCC----
Q 005161 15 FQLFNTLI--YACNKRGCVELGAKWFHMMLECDVQPNV----ATFGMLMGLYKKSWNVEEAEFAFNQMR--KLGLV---- 82 (711)
Q Consensus 15 ~~~~~~~l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---- 82 (711)
.+.+.--+ .-+|+.|+....+.+|+.+++.|. .|. ..|..|.++|.-.++++.|++....=. .+...
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 34444444 358899999999999999999873 333 345566677777788999988765321 11111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCC--------------------HHH
Q 005161 83 CESAYSAMITIYTRLSLYEKAEEVIRLIRE----DK-VVPNLENWLVMLNAYSQQGK--------------------LEE 137 (711)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~ 137 (711)
...+-..|.+.+--.|.+++|+....+-+. .| ......++..+...|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 134556677888888999999877665432 11 11123445556666655443 233
Q ss_pred HHHHHHHHHHc----CC-CCCHHHHHHHHHHhhccCChHHHHHHHHHH----HhcCCC-CChhhHHHHHHHHHhcCCHHH
Q 005161 138 AELVLVSMREA----GF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSI----KDVGLE-PDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 138 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~g~~~~ 207 (711)
|.+.|++=++. |- -.-...|..|...|.-.|+++.|...-+.- .+.|-. .....+..+..+++-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 34444332221 10 001123444555555567777776554331 122211 122345566667777777777
Q ss_pred HHHHHHHHHhcCCC-----ccHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 005161 208 AKWYYKELKHLGYK-----PNASNLYTLINLHAKYEDEEGAVNTLDD 249 (711)
Q Consensus 208 A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 249 (711)
|.+.|+......++ .......++...|.-..+++.|+..+.+
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 77777655432111 1122233444444444455555554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0059 Score=51.88 Aligned_cols=104 Identities=16% Similarity=0.286 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhh
Q 005161 117 PNLENWLVMLNAYSQ-----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETT 191 (711)
Q Consensus 117 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (711)
.+..+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++++=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 366677777777764 36677777778888888888888888888887644 2211 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCC
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYED 239 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (711)
--.| -.+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1011 12345577777888888888888888777777766653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0046 Score=56.30 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=57.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVML 126 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 126 (711)
.|...+..+.+.|++++|...|+.+.+..|.+ ..++..++..|...|++++|...|+.+....+. ....++..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 33343444445566777777777776666654 346666666667777777777777666643321 1233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005161 127 NAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..+...|+.++|..+++.+++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5565666666666666666665
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0025 Score=59.02 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005161 406 RMYVKAGSLKDACAVLETMEKQKD--IEPDAYLYCDMLRIYQQCGMLDKLSYLY 457 (711)
Q Consensus 406 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (711)
.-+++.|+....+.+|+..++... +..-+..|+.+.++|.-.+++++|+++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 347788888888888888754321 1222455777777777788888887764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0061 Score=55.52 Aligned_cols=102 Identities=13% Similarity=-0.019 Sum_probs=82.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSA 89 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 89 (711)
...|..-+..+.+.|++++|...|+.+++..+... ...+.-+..+|...|++++|...|..+.+..|.+ ..++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34455555555778999999999999998742211 3567778889999999999999999999877764 577888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 90 MITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
++.++...|+.++|...|+.+....+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 889999999999999999999886644
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0084 Score=50.98 Aligned_cols=105 Identities=13% Similarity=0.284 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHhhc-----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh
Q 005161 152 PNIVAYNTLMTGYGK-----VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN 226 (711)
Q Consensus 152 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 226 (711)
.+-.+|..++..|.+ .|.++=....+..|.+.|+..|..+|+.|++.+-+ |.+- -..+|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------- 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------- 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-------------
Confidence 466777777776653 47888888889999999999999999999988764 3321 111111
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh-hHHHHHHHHHHhcCCCC
Q 005161 227 LYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS-SILGTLLQAYEKAGRTD 275 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 275 (711)
.+.. -...+-+-|+.++++|...|.-|+ ++...+++.+.+.+..-
T Consensus 110 --~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 110 --AEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred --HHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 1111 112355778999999999999988 88999999988877643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.24 Score=49.33 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHH-hcCCHHHHHHH
Q 005161 237 YEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYV-KHGLIDDAMKV 315 (711)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 315 (711)
..+.+.+...+..++..-|-....+...+..-.+.|..+.+.++|++.+..-+ .....|........ ..|+.+...+.
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip-~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP-LSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 33445566666667666666667777777777788888888888887776544 36666666555444 35666666667
Q ss_pred HHhhhhc-CCC-ccHhhHHHHHHHHHccCChhhHHHHHHHHhh
Q 005161 316 LGDKRWK-DTV-FEDNLYHLLICSCKDSGHLANAVKIYSHMHI 356 (711)
Q Consensus 316 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 356 (711)
|+..... |.. .+...|...|.--..++++.....++++.++
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 7665443 211 1223466666666666777777777777765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.014 Score=47.53 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=73.5
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
-+-..|++++|..+|.-+.-.++.+..-|..|..++...+++++|+..|......++. |+.+.-....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 3457899999999999999988888888899999999999999999999876554432 444555778888899999999
Q ss_pred HHHHHHHHHc
Q 005161 139 ELVLVSMREA 148 (711)
Q Consensus 139 ~~~~~~~~~~ 148 (711)
...|+..+..
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 9999998884
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.17 Score=47.21 Aligned_cols=151 Identities=13% Similarity=-0.018 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (711)
+...|...-.+..+..+.-...-..-..++.+.|+..++..+++.+.+....| ..+... .+.+.|+ .+..-+++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY--~~ar~gd--ta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLY--VRARSGD--TALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHH--HHhcCCC--cHHHHHHH
Confidence 45666666666666655444555556677888888889989998888874333 333222 2334444 33333333
Q ss_pred HHHc-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHh-ccCChHHHHHHHHHHHHcCCC
Q 005161 599 MKET-SCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYG-IAGMVEDAVGLVKEMRENGIE 675 (711)
Q Consensus 599 ~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~ 675 (711)
..+. ..+|+ ..+...+..+-...|++..|..--+.... ..|....|-.|...-. ..|+-.++...+-+..+..-.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 3221 13444 44555666777778888888777776665 4788778877777655 458888888888888765555
Q ss_pred CC
Q 005161 676 PD 677 (711)
Q Consensus 676 p~ 677 (711)
|.
T Consensus 396 Pa 397 (531)
T COG3898 396 PA 397 (531)
T ss_pred Cc
Confidence 54
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0022 Score=45.39 Aligned_cols=57 Identities=19% Similarity=0.096 Sum_probs=37.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+|.+.++++.|.++++.+...+|.+...|.....++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 455666666666666666666666666666666666666666666666666666544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0036 Score=50.82 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
......-+-..|++++|..+|+-+.--++. +..-+..+..++-..+++++|...+......+. .|+........++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 344455566778888888888876655543 555566677777777888888888877665542 344445556677777
Q ss_pred cCChHHHHHHHHHHHh
Q 005161 167 VSNMEAAQRLFLSIKD 182 (711)
Q Consensus 167 ~~~~~~a~~~~~~~~~ 182 (711)
.|+.+.|+..|+....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 8888888888887776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.16 Score=44.49 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 005161 540 SYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI---- 615 (711)
Q Consensus 540 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---- 615 (711)
..+.++..+...|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|+...+.....+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666777777777788888877666677777888888888888888888888776543344444443333
Q ss_pred -HHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHH
Q 005161 616 -DIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYT 682 (711)
Q Consensus 616 -~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 682 (711)
..|.-++++..|...++++.... .-++...|.-+-+..-.|+..+|++.++.|.+ ..|...+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 34555677888888888877642 22455556666666677888888888888887 566554433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.024 Score=46.95 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=45.9
Q ss_pred chHhHHHHHHH---HHhcCChHHHHHHHHHHhHc--C-CCCCHhh--H----------------HHHHHHHHccCCHHHH
Q 005161 14 NFQLFNTLIYA---CNKRGCVELGAKWFHMMLEC--D-VQPNVAT--F----------------GMLMGLYKKSWNVEEA 69 (711)
Q Consensus 14 ~~~~~~~~l~~---~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~--~----------------~~l~~~~~~~g~~~~A 69 (711)
|...|..+++. ....|+...+...++.++.. | +-|+... | ..++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 45566666543 35678888888888888763 2 1122111 1 1222333334444444
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 70 EFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRL 109 (711)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 109 (711)
..+...+...+|.+...|..++.+|...|+..+|.+.|+.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.12 Score=51.30 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY------ 609 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------ 609 (711)
.+..+...+...+.+...+.-|.++|..|-+. .++++.....++|.+|..+-++..+ +.||..
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 45555555555566666677777777776443 3566777788888888888888776 344433
Q ss_pred -----HHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 610 -----TYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 610 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
-|...-.+|.++|+-.+|..+++++...
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2334456778888888888888887653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.093 Score=49.92 Aligned_cols=163 Identities=15% Similarity=0.055 Sum_probs=98.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCC----CchhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 005161 507 LNVMLDIYGKAKLFKRVRKLFSMAKKLGL----VDVISYNTIIAAYGQ---NKNLESMSSTVQEMQFDGFSVSLEAYNSM 579 (711)
Q Consensus 507 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 579 (711)
...++-+|....+++...++.+.+..... ..+..-...+.++-+ .|+.++|+.++..+....-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33455568888889988888888877632 234444455566666 78888899888886666567888888888
Q ss_pred HHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-HH---HHHHHH---HHHH-HCCCCC-
Q 005161 580 LDAYGKE---------GQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGW-IN---EVVGVL---TELK-ECGLRP- 641 (711)
Q Consensus 580 ~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~~~~p- 641 (711)
...|-.. ...++|...+.+.-+. .|+..+=-.+...+...|. .+ +..++- ..+. +.|...
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 7766321 2356677777666553 3554422222222333332 22 222332 1111 233222
Q ss_pred --ChHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 642 --DLCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 642 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+--.+.+++.++.-.|++++|.+.+++|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 223446677888888888888888888886
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0045 Score=43.82 Aligned_cols=64 Identities=14% Similarity=-0.074 Sum_probs=56.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESA 86 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 86 (711)
-..|.+.++++.|.++++.+++.+ +.+...+.....++.+.|++++|...|+.+.+.+|.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 357889999999999999999986 5678888889999999999999999999999999876443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.47 Score=47.35 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 329 NLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMY 408 (711)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (711)
.+|...+..-...|+.+.+.-+|++..-. +..-...|-..+......|+.+.+..++....+--.+..+.+-..-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 45666666667777777777777776431 11223344445555555577777766665554432222222211111122
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 005161 409 VKAGSLKDACAVLETMEKQ 427 (711)
Q Consensus 409 ~~~~~~~~A~~~~~~~~~~ 427 (711)
-..|++..|..+++.+..+
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 2346777777777777544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.34 Score=45.77 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK 585 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 585 (711)
+.+..+.-+...|+...|.++-.. ..+|+..-|...+.+++..++|++...+... .-++.-|..++.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~---Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE---FKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 344445556677887777776543 3457888888888888888888877765432 2345778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 586 EGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
.|+..+|..++.++. +..-+..|.+.|++.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888888888877721 1345677788888888877655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.64 Score=48.28 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL----MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 199 (711)
..+..+.+...++-|..+-+. .+. +..+...+ ...+.+.|++++|...|-+-... ++| ..+|.-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 345555555555555544332 211 22222222 23334556666666655544321 112 1234444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHH
Q 005161 200 GRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAV 244 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (711)
........-..+++.+.+.|+. +...-..|+.+|.+.++.+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 4444555555555555555543 3333344555666666655433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.18 Score=45.45 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=85.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 139 (711)
....|++.+|..+|+......+.+..+...++.+|...|+.+.|..++..+..............-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 45677888888888888877777777777788888888888888888877655432222222233455555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcC
Q 005161 140 LVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG-LEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 203 (711)
.+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+ -..|...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555543 2366666666777777777777776655554421 1123334444444444333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.31 Score=43.13 Aligned_cols=53 Identities=21% Similarity=0.079 Sum_probs=29.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
+.|++++|...|+.+....|.+ ..+...++.++-+.+++++|+..+++.....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 4566666666666666555543 3445555555556666666665555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.26 Score=49.18 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcch---------
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKIT--------- 680 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------- 680 (711)
+...+...+.+...+.-|-++|.+|-+ ...++......++|.+|..+.++..+ +.||...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 333333334444445556666665533 12345555666677777666666554 4444311
Q ss_pred --HHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 681 --YTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 681 --~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+.-.-++|.++|+..||..+++.+...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 222334566777777777777776554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0026 Score=45.77 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=35.5
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHHc--CCCC---C-cchHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDAVGLVKEMREN--GIEP---D-KITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
.+|+.+..+|...|++++|+..+++..+. ...+ + ..++..+..++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666665531 0111 1 3455666666666666666666666554
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.86 Score=47.39 Aligned_cols=46 Identities=11% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLS 454 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 454 (711)
++..+.+..+++.+..+.+...+ .++..|..++..+.+.+.++...
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-----~~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-----EDPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-----cChHHHHHHHHHHhhhcchhhHH
Confidence 44445555666666666655521 14555666666666665444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.044 Score=48.74 Aligned_cols=96 Identities=22% Similarity=0.162 Sum_probs=71.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-P-NLENWLVML 126 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 126 (711)
.|+.-+.. .+.|++..|...|....+..|.+ ..++..|...+...|++++|...|..+.+..+. | -+.++..+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 36677888888888888877765 567888888888888888888888877765432 1 235666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005161 127 NAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
.+..+.|+-++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888888876
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.84 Score=46.80 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred CCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 323 DTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFT 402 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 402 (711)
+.....-+.+..+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-+++-+... ++.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 334445567777777778888888888877775 5777788888888888888876665443322 355677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005161 403 VVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYL 456 (711)
Q Consensus 403 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 456 (711)
..+..|.+.|+.++|..++-+.. +.. -...+|.+.|++.+|.++
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~------~l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVG------GLQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccC------ChH----HHHHHHHHhccHHHHHHH
Confidence 78888888888888888887661 111 455667777777776654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.56 Score=44.84 Aligned_cols=168 Identities=5% Similarity=-0.061 Sum_probs=106.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCccHHHHHHHHHHHhc---cCcHHHHHHHHHH-HHHcCCCchhH
Q 005161 468 NQELYDCVINCCARALPIDELSRVFDEMLQHG---FTPNIITLNVMLDIYGK---AKLFKRVRKLFSM-AKKLGLVDVIS 540 (711)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~-~~~~~~~~~~~ 540 (711)
+..+...++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|.+++.. +.....+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444556667889999999999999988641 11122222334445666 8999999999988 55555688999
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHH---H-HHHcC
Q 005161 541 YNTIIAAYGQ---------NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQM----ENFKNVLR---R-MKETS 603 (711)
Q Consensus 541 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~---~-~~~~~ 603 (711)
+..+.+.|-. ....++|+..|.+.-+.. |+...--.++..+...|.. .+..++-- . +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9999988742 123667888887766543 4433322233333344432 23333331 1 11233
Q ss_pred C---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 604 C---TFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 604 ~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
. ..+.-.+..++.++.-.||.++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234445667888889999999999999999874
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.073 Score=40.85 Aligned_cols=92 Identities=15% Similarity=0.005 Sum_probs=74.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED-KVVPN--LENWLVMLNAYSQQGK 134 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~ 134 (711)
-+++..|+++.|++.|.+....-|....+||.-.+++.-+|+.++|++-+++.++. |...- ..+|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45678999999999999999999988999999999999999999999999987764 33311 1234445556777899
Q ss_pred HHHHHHHHHHHHHcC
Q 005161 135 LEEAELVLVSMREAG 149 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~ 149 (711)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998888876
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.019 Score=55.23 Aligned_cols=66 Identities=8% Similarity=-0.107 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 570 SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDH----YTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
+.+...++.+..+|...|++++|...+++.++. .|+. .+|..+..+|...|++++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566777777777777777777777777763 4553 24677777777777777777777777763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.047 Score=52.64 Aligned_cols=66 Identities=17% Similarity=0.004 Sum_probs=47.1
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYSAMITIYTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (711)
.+...+..+..+|.+.|++++|...|++..+.+|.+. .+|+.+..+|...|++++|+..+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777777777664 34777777777777777777777777664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.52 Score=41.77 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...|..-+....+.|++++|.+.|+.+....+. ....+...++-++-+.++++.|+..+++.++..+.....-|...+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 445555566667778888888888877665422 133455566667777788888888888877764333333344444
Q ss_pred HHhh
Q 005161 162 TGYG 165 (711)
Q Consensus 162 ~~~~ 165 (711)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.21 Score=40.71 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=59.2
Q ss_pred HccCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN---WLVMLNAYSQQGKL 135 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 135 (711)
++.+..++|+..|..+.+.+... .-+...+.....+.|+...|...|.++-.....|...- ...-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45556666666666666555432 22334445555666666666666666655444443221 11111223344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
+......+-+...+-+.-...-..|.-+-.+.|++..|..+|+.+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444444333222222333444444455666666666655554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.5 Score=40.32 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=88.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
.|-...|.--|.......|..+.++|.+...+...|+++.|.+.|+...+.++.-+-...+.-|. +--.|+++-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 34444455555555555666667777777777777777777777777766554423222222222 22456777776555
Q ss_pred HHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHH-HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005161 143 VSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLF-LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGY 220 (711)
Q Consensus 143 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 220 (711)
...-+.+. +|-...|--+.. ..-++.+|..-+ ++... .|..-|..-|-.+.- |+..+ ..+++++....-
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERLKADAT 227 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhcc
Confidence 55544421 122222332222 233455554433 33332 233333333322211 11110 111222221100
Q ss_pred ------CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 221 ------KPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 221 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
+.-+.||--+.+.+...|+.++|..+|+-.+...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0114566777777777777777777777776644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.01 Score=42.61 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCC---CC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKEC--GLR---PD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+++.+...|...|++++|+..|++..+. ... |+ ..+++.+..+|...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666777777777777666541 011 22 34566677777777777777777776653
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.064 Score=50.44 Aligned_cols=90 Identities=18% Similarity=0.067 Sum_probs=44.6
Q ss_pred HHHHhcCChHHHHHHHHHHhHcC-----CCC---------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 23 YACNKRGCVELGAKWFHMMLECD-----VQP---------NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
..|.+.|++..|..-|+.++..= .++ -...+..|.-+|.+.+++..|++.-.++++.++.+..+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 36778899999998888866521 000 0112223333344444444444444444444444444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
.-..+|...|+++.|+..|+.+++
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 444444444444444444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.88 Score=42.54 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 539 ISYNTIIAAYGQNKNLE---SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI 615 (711)
Q Consensus 539 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (711)
.++..++.+|...+..+ +|..+++.+... ++..+.++..-+..+.+.++.+.+.+.+.+|... +.-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 45667778887777655 556666666544 3444556666677777788999999999999875 222333444444
Q ss_pred HHH---hhcCCHHHHHHHHHHHHHCCCCCChH-hHHHH----HHHHhccCC------hHHHHHHHHHHHHc---CCCCCc
Q 005161 616 DIY---GEQGWINEVVGVLTELKECGLRPDLC-SYNTL----IKAYGIAGM------VEDAVGLVKEMREN---GIEPDK 678 (711)
Q Consensus 616 ~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l----~~~~~~~g~------~~~A~~~~~~~~~~---~~~p~~ 678 (711)
..+ .. .....|...++.++...+.|... ....+ +......++ .+...+++....+. .+.+..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 33456777777776654566543 11111 112222222 33344444433221 222221
Q ss_pred -chHHHHH----HHHHhcchHHHHHHHHHHHH
Q 005161 679 -ITYTNMI----TALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 679 -~~~~~l~----~~~~~~~~~~~A~~~~~~m~ 705 (711)
....+++ ..+.+.+++.+|.+|++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2223332 23567899999999998543
|
It is also involved in sporulation []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.037 Score=45.82 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhh
Q 005161 507 LNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD-----GFSVSLEA 575 (711)
Q Consensus 507 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 575 (711)
...++..+...|++++|..+...+....|.+...|..++.+|...|+...|.+.|+.+.+. |++|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555666666777777776666666666666666666666666666666666655332 55555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.13 Score=40.98 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=45.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..+.|++++|.+.|+.+..+-|.+ ..+...++.+|.+.+++++|...++++++..+......|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 346677777777777777766654 45666777777777777777777777776654433334444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.013 Score=36.17 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=25.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
++..+..+|.+.|++++|.++|+++.+.+|.+..+|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666666666655544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.84 Score=41.35 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcC
Q 005161 397 DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCG 448 (711)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 448 (711)
|...-..+...+...|+.+.|.+.+-.+.+...-..|...-..++..+...|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444555555566666666666555544443322333344444444444444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.41 Score=37.14 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 005161 439 DMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF 500 (711)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 500 (711)
.-+..+...|.-++..+++..+.+ +-.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333444445555555555555443 2234444555555555555555555555555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.11 Score=41.13 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 005161 393 GIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQ 445 (711)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (711)
...|+..+..+++.+|+..+++..|+++++.+.+..+++-+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577788888888888888888888888888777777767777777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.1 Score=41.19 Aligned_cols=226 Identities=20% Similarity=0.102 Sum_probs=143.9
Q ss_pred cCChHHHHHHHHHHhHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQP-NVATFGMLMGLYKKSWNVEEAEFAFNQMRK--LGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
.+....+...+.......... ....+......+...+++..+...+..... ..+.....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 455666666666666653221 356666677777888888888888888776 44444667777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005161 105 EVIRLIREDKVVPNLENWLVMLN-AYSQQGKLEEAELVLVSMREAGF--SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877755443 122222333 67788888888888888865321 1233333444444566778888888888877
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 182 DVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
..........+..+...+...+.++.|...+......... ....+..+...+...+..+.+...+.......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6432113556667777777777788888888877765221 123333334444455566777766666666544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.57 Score=45.62 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHH---HcCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 005161 520 FKRVRKLFSMAK---KLGLVDVISYNTIIAAYGQN---------KNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEG 587 (711)
Q Consensus 520 ~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 587 (711)
.+.|..+|.++. ..+|.....|..+..++... .+..+|.+..+...+.+ +.|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456666676666 44444455555555544321 11223444444444443 444555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 588 QMENFKNVLRRMKETSCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555566666555543 233 22333334444445555666555555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.6 Score=43.26 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH
Q 005161 542 NTIIAAYGQNKNLESMSSTVQEMQFDG-----FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE----TSCTFDHYTYN 612 (711)
Q Consensus 542 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 612 (711)
.++..++...+.++++++.|+...+.- .-....++-.+...|.+..|+++|.....+..+ .++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 334455555555555555555544321 111233455566666666666666655554432 11111111122
Q ss_pred -----HHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 613 -----IMIDIYGEQGWINEVVGVLTELKE----CGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 613 -----~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
.+.-++...|.+-+|.+.-++..+ .|-.+. ......+...|...|+.+.|+.-|+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222344555665555555555443 333332 3344555666666777766666666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.1 Score=41.09 Aligned_cols=221 Identities=14% Similarity=0.001 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHhccCcHHHHHH
Q 005161 448 GMLDKLSYLYYKILKSGITW-NQELYDCVINCCARALPIDELSRVFDEMLQH-GFTPNIITLNVMLDIYGKAKLFKRVRK 525 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 525 (711)
+....+...+.......... ...........+...+....+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444443221 2344555555556666666666666655531 123334444444555555566666666
Q ss_pred HHHHHHHcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 526 LFSMAKKLGLVDVISYNTIIA-AYGQNKNLESMSSTVQEMQFDGF--SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602 (711)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (711)
.+.......+.+......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666665544433233333333 55666666666666666544210 012222233333344555666666666666553
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 603 SCTF-DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 603 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
. +. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 197 N-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred C-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 22 2445555555556666666666666666552 233 33334444444444556666666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.12 Score=48.79 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=56.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC----CCc-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLG----LVC-----------ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN 121 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (711)
.+.|.+.|++..|...|+++...= ..+ ..+++.+..+|.+.+++..|+...+.++..++. |.-+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 456678899999988888755321 111 123555666666666666666666666655443 5555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 122 WLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 122 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
+-.-..++...|+++.|...|+.+++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555566666666666666666666665
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.94 Score=39.58 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCChhhHHHH
Q 005161 505 ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD---G--FSVSLEAYNSM 579 (711)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l 579 (711)
..++.-...|..+|.++.|-..+++.-+. ....++++|+++|++.... + ...-...+...
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 33444455666666666666655544332 2344556666666554322 1 01112233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCC--CCC-ChHhHHHHHH
Q 005161 580 LDAYGKEGQMENFKNVLRRMKE----TSCTFDH-YTYNIMIDIYGEQGWINEVVGVLTELKECG--LRP-DLCSYNTLIK 651 (711)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~ 651 (711)
...+.+...+++|-..+.+-.. ..--++. ..|-..|-.+....|+..|.+.++.-.+.+ ..| +..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5556666677666655544321 1112222 234455556666778888888888754421 122 3567777777
Q ss_pred HHhccCChHHHHHHH
Q 005161 652 AYGIAGMVEDAVGLV 666 (711)
Q Consensus 652 ~~~~~g~~~~A~~~~ 666 (711)
+| ..|+.+.+.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 77 566777766554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.6 Score=45.46 Aligned_cols=148 Identities=7% Similarity=0.026 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHh-CCCCcc-HHHHHHHHHHHhc---------cCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 484 PIDELSRVFDEMLQ-HGFTPN-IITLNVMLDIYGK---------AKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNK 552 (711)
Q Consensus 484 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 552 (711)
..+.|+.+|.+... ....|+ ...|..+..++.. .....+|.++..+..+.++.|+.+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45678888888882 223444 3344444433321 234567788888888998899999999998888888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCCHHHHHH
Q 005161 553 NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY---TYNIMIDIYGEQGWINEVVG 629 (711)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 629 (711)
+.+.|...|++....+ |.....|......+.-.|+.++|.+.+++..+. .|... .....++.|+. ..+++|++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 8999999999988764 445666777777778889999999999997763 45432 33333445554 34677777
Q ss_pred HHHHHH
Q 005161 630 VLTELK 635 (711)
Q Consensus 630 ~~~~~~ 635 (711)
++-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 765433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1 Score=39.41 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHhhcC---CCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 005161 333 LLICSCKDSGHLANAVKIYSHMHICD---GKPNLHIMCTMIDTYSVMGMFTEAEKLY 386 (711)
Q Consensus 333 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (711)
..|-.+...+++..|...++.-.+.+ -+.+..+...++.+| ..|+.+++..++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444445555555555432211 123445555666554 345555544433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.62 Score=47.18 Aligned_cols=181 Identities=19% Similarity=0.151 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-chh------HHHHHHHHHHh----cCC
Q 005161 31 VELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV-CES------AYSAMITIYTR----LSL 99 (711)
Q Consensus 31 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~------~~~~l~~~~~~----~~~ 99 (711)
+.-..=+|+.++.. +||.. ..++....-.||-+.+++.+....+.+-. .+- .|...+..++. ...
T Consensus 173 v~~G~G~f~L~lSl-LPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHHh-CCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 45555567777765 35543 34666666789999999998887663322 221 23444433333 456
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 100 YEKAEEVIRLIREDKVVPNLENWLVM-LNAYSQQGKLEEAELVLVSMREAG---FSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
.+.|.++++.+...- |+...|... .+.+...|++++|.+.++...... .+.....+-.++-.+.-.+++++|.+
T Consensus 249 ~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 788999999988865 555555433 455666899999999999766421 12234456667777888899999999
Q ss_pred HHHHHHhcCCCCChhhHHHHH-HHHHhcCCH-------HHHHHHHHHHHhc
Q 005161 176 LFLSIKDVGLEPDETTYRSMI-EGWGRAGNY-------REAKWYYKELKHL 218 (711)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~~~~~ 218 (711)
.|..+.+.+- -+...|..+. .++...|+. ++|.++|.+....
T Consensus 327 ~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 327 YFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999988542 2334444333 334456777 8999999888654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.2 Score=45.61 Aligned_cols=115 Identities=7% Similarity=-0.030 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchh----HHHHHHHHHHhcCCHHHH
Q 005161 482 ALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVI----SYNTIIAAYGQNKNLESM 557 (711)
Q Consensus 482 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a 557 (711)
.|+..+|-..++++++. .|.|...+...-.+|.-.|+...-...++++...-.++.+ ....+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555543 3445555555555566666666666666555544222221 112223333455556666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (711)
.+.-++..+.+ +.|.-.-......+.-.|+..++.+...+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 65555555443 33333333444444455555555555444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.14 Score=39.44 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCCC--hHhHHHHHHHHhccCC
Q 005161 582 AYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC-GLRPD--LCSYNTLIKAYGIAGM 658 (711)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 658 (711)
+.+..|+.+.|++.|.+.+.. .+.....||.-..++.-+|+.++|+.-+++..+. |-+.. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456677888888888777764 3456667777777777788888888877777762 22211 1234444556667777
Q ss_pred hHHHHHHHHHHHHcC
Q 005161 659 VEDAVGLVKEMRENG 673 (711)
Q Consensus 659 ~~~A~~~~~~~~~~~ 673 (711)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777877777777654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.7 Score=43.33 Aligned_cols=332 Identities=11% Similarity=0.092 Sum_probs=170.2
Q ss_pred HHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 333 LLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGM---FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYV 409 (711)
Q Consensus 333 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (711)
.+++-+...+.+..|+++-..+...-..- ...|......+.+..+ -+.+..+-+++... . .+...|..+..--.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 45666777888888888887775322111 4556555555555432 22222222333221 2 34455666666666
Q ss_pred HcCChHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 005161 410 KAGSLKDACAVLETMEKQKDIEP---DAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPID 486 (711)
Q Consensus 410 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 486 (711)
..|+.+-|..+++.=.....-.| +..-+..-+.-+.+.|+.+....++-.+...- +...+.. ...+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhch
Confidence 78888888887764311110001 11223344445556666666665555543321 1111111 112334
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHH-HHHHHcC-C-CchhHHHHHHHHHHhcCCHH---H----
Q 005161 487 ELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLF-SMAKKLG-L-VDVISYNTIIAAYGQNKNLE---S---- 556 (711)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~---~---- 556 (711)
.|..+|.++.+.. +.. .+-+.|.+..+...+-.+. +...... . +-..........+.+.+... +
T Consensus 590 ~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 4555555555421 111 1122232222222221111 1100000 0 11222333344444433311 1
Q ss_pred ---HHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 005161 557 ---MSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLT 632 (711)
Q Consensus 557 ---a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (711)
-+.+.+.+... |......+.+--+..+...|+..+|.++-.+.. -||-..|..-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11222222221 333344445555666677788888888777765 5777788888888888888887766655
Q ss_pred HHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHH
Q 005161 633 ELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 633 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
..+ .+.-|.-...+|.+.|+.++|.+++-+... .. -.+.+|.+.|++.+|.+.-
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 432 244566677888888888888887766432 11 4667788888888877654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.1 Score=38.47 Aligned_cols=180 Identities=13% Similarity=0.027 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|-..-|..-|.+.+...+. -+.+|+.+.--+...|+++.|.+.|+...+.++.-+-...|.-+. +.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 3334444444444443333 456788888888889999999999999998754333333333333 33468999998877
Q ss_pred HHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCccHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 178 LSIKDVGL-EPDETTYRSMIEGWGRAGNYREAKWYY-KELKHLGYKPNASNLYTL-INLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 178 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
...-+.+. .|=...|--++. +.-++.+|..-+ ++.... +..-|... ...|...-.. +.+++++....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE---ETLMERLKADA 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH---HHHHHHHHhhc
Confidence 76655332 232333433332 344666665443 333332 33333322 2333222222 22333333322
Q ss_pred CCC-------hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccC
Q 005161 255 CQH-------SSILGTLLQAYEKAGRTDNVPRILKGSLYQHV 289 (711)
Q Consensus 255 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (711)
.++ ++++-.+...+...|+.++|..+|+-++..++
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 222 25677899999999999999999998876543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.35 Score=48.11 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
.....++..+.+.|..+.|+.+.+ |.. .-.....+.|+++.|.++.++.. +...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD------DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHH
Confidence 334555555555555555555543 221 12344566777777776654432 445677777777
Q ss_pred HccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005161 339 KDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDAC 418 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 418 (711)
...|+++-|...|.+... +..++-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 777777777777766542 44455556667776666666666555431 344445555567777777
Q ss_pred HHHHHH
Q 005161 419 AVLETM 424 (711)
Q Consensus 419 ~~~~~~ 424 (711)
+++...
T Consensus 423 ~lL~~~ 428 (443)
T PF04053_consen 423 DLLIET 428 (443)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.5 Score=41.46 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=79.9
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--hcCCHHHHHHHHHHHHH-
Q 005161 560 TVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG--EQGWINEVVGVLTELKE- 636 (711)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~- 636 (711)
++..+...+.+.....-+.+++.+...|-..+|+..+..+... .+|+...|..++..-. ..-++..+..+++.|..
T Consensus 447 Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 447 IISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred HHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 3444444443333334467888888999999999999999876 3677788887775422 12237788889988876
Q ss_pred CCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005161 637 CGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676 (711)
Q Consensus 637 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 676 (711)
.| .|+..|...+.--...|..+.+-.++.++.+. +.|
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt-l~~ 562 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT-LQG 562 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHHHHHHh-hCh
Confidence 45 67778877777777889998888888887652 444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.23 Score=44.38 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=80.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQ--PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
..|+.-+..+ ..|++..|...|...++..+. -....+-=|..++...|+++.|...|..+.+..|.+ ++++..+
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3566666555 566699999999999986522 112233347888899999999999999999988765 5789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
..+..+.|+.++|...|+++.+.-+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999987644
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.24 Score=39.19 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-CCCCCChHhHHHHHHH
Q 005161 603 SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE-CGLRPDLCSYNTLIKA 652 (711)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~ 652 (711)
...|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4567777888888888888888888888887776 4555566777777633
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.35 Score=48.09 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE 620 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (711)
.+.++..+.+.|-++.|+++..+-. .-.+...+.|+++.|.++.++. ++...|..|.+....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4444555555555555555433211 1122334455555555544332 244556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 621 QGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+|+++-|.+.|++..+ +..|+-.|...|+.++-.++.+....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666655432 34455555555555555555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.4 Score=39.71 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhccCcH---HHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005161 505 ITLNVMLDIYGKAKLF---KRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLD 581 (711)
Q Consensus 505 ~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 581 (711)
.++..++.+|...+.. ++|..+++.+....+..+..+..-+..+.+.++.+.+.+.+.+|... +......+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 3456667777776654 45666666776666656666767777777788889999999998876 2324445555555
Q ss_pred HHHh--cCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HH-H--HHhhcCC------HHHHHHHHHHHHH-CCCCCChH---
Q 005161 582 AYGK--EGQMENFKNVLRRMKETSCTFDHY-TYNI-MI-D--IYGEQGW------INEVVGVLTELKE-CGLRPDLC--- 644 (711)
Q Consensus 582 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~-~--~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~--- 644 (711)
.+.. ......|...+..+....+.|... .... ++ . .....++ ++....+++.+.. .+.+.+..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4422 123455666666666544555553 1111 11 1 1122222 4445555554333 12222322
Q ss_pred hHHHHH----HHHhccCChHHHHHHHHHHH
Q 005161 645 SYNTLI----KAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 645 ~~~~l~----~~~~~~g~~~~A~~~~~~~~ 670 (711)
+..+++ ..+.+.++++.|.+.|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233333 44668899999999998654
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.3 Score=36.43 Aligned_cols=132 Identities=10% Similarity=0.001 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch----hHHHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNV-ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE----SAYSAMI 91 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~ 91 (711)
.|..-|. +.+.+..++|+.-|..+.+.|...=+ ........+.+..|+-..|...|+.+-...+.|. -+...-.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3433333 45667789999999999987743211 1222334556789999999999999988766552 2344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
-.++.+|.|+......+.+-..+...-......+.-+-.+.|++..|...|..+....
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 6778899999998888877655433334455667767778999999999999988753
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=4.2 Score=42.28 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=68.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLV--CESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
=++++.+.+.+++|..+-+.....-+. ....+...+..+...|++++|-...-.|... +..-|...+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 457777888888888887766554432 3567778888888888888888888877763 4455666666666555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
... .++..+.......++.+|..++..+..
T Consensus 438 ~l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 544 334444444334566777777766654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.3 Score=48.17 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=76.8
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHH
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTY----RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLH 234 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (711)
..+..--++|-+..|+.++. |+...+ .+....+.+.+.+++|.-.|+..-+ ....+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHH
Confidence 33333345566666665552 444443 3444455567777777777765432 22356677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHH
Q 005161 235 AKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMK 314 (711)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 314 (711)
..+|++.+|..+..++....-.....-..++..+...+++-+|-++.+..... ..-.+..|++...+++|+.
T Consensus 976 ~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALR 1047 (1265)
T ss_pred HHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHH
Confidence 77888888877776654321111122256777777778888887777765443 1233445566666666665
Q ss_pred HHH
Q 005161 315 VLG 317 (711)
Q Consensus 315 ~~~ 317 (711)
+-.
T Consensus 1048 va~ 1050 (1265)
T KOG1920|consen 1048 VAS 1050 (1265)
T ss_pred HHH
Confidence 543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.54 Score=37.64 Aligned_cols=58 Identities=22% Similarity=0.132 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 200 GRAGNYREAKWYYKELKHLGYK--PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
.+.|++++|.+.|+.+...-.. -...+-..++.++.+.++++.|...+++.++..|.+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3555566665555555544111 012233344445555555555555555555554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.076 Score=32.67 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWL 123 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (711)
+|..+...|...|++++|.++|+++++..+. +...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 4555566666666666666666666555433 334433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.4 Score=36.08 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 005161 579 MLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~ 598 (711)
.+..|.+.+-++++.-++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 44444444444444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.7 Score=42.34 Aligned_cols=156 Identities=9% Similarity=-0.075 Sum_probs=109.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH--HHHhcCCHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED-KVVPNLENWLVMLN--AYSQQGKLE 136 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~--~~~~~~~~~ 136 (711)
+-..|+..+|-..++++.+..|.+--++.-.=.+|.-+|+...-...++++... +......+|..-+. ++...|-++
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346789999999999999988887667777778888899999999999988764 43322333433333 334679999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP---DETTYRSMIEGWGRAGNYREAKWYYK 213 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 213 (711)
.|++.-++..+.+ +.|.....++...+--.|+..++.+...+-...--.. -..-|=-..-.++..+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988888875 4577777778888888899999988876644321101 11112223334567789999999998
Q ss_pred HHH
Q 005161 214 ELK 216 (711)
Q Consensus 214 ~~~ 216 (711)
+-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.6 Score=44.37 Aligned_cols=83 Identities=10% Similarity=-0.054 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCChhhHHHHHHHHHhcCCHHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDG--F-SVSLEAYNSMLDAYGKEGQMENFKNV 595 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (711)
+.+.|.+++..+.+..|....-...-.+.+...|++++|++.++...... . ......+.-+...+.-.++|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34455555555555444433333334444445555555555555433210 0 01112222333444445555555555
Q ss_pred HHHHHH
Q 005161 596 LRRMKE 601 (711)
Q Consensus 596 ~~~~~~ 601 (711)
|..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.035 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=24.8
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 73 FNQMRKLGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
|++..+.+|.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777877888888888888888888775
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.3 Score=39.37 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=75.9
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 330 LYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYV 409 (711)
Q Consensus 330 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (711)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++-.. +-++.-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 55666677777888888877776664 47888888888888888888877665332 224567888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005161 410 KAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYL 456 (711)
Q Consensus 410 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 456 (711)
+.|...+|..++..+. +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHH
Confidence 8888888888877641 13456667777877777653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.4 Score=34.27 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 608 HYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
+...-.+..+|.+.|+..++.+++.++.+.
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 333333333444444444444444433333
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.7 Score=35.63 Aligned_cols=54 Identities=13% Similarity=0.021 Sum_probs=32.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+.++.+.+..++..+.-..|.....-..-+..+...|++.+|..+|+.+....
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666666555444445555666666666666666655443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.3 Score=41.13 Aligned_cols=166 Identities=11% Similarity=0.011 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CChhh
Q 005161 400 AFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD---AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT-----WNQEL 471 (711)
Q Consensus 400 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 471 (711)
.|..+.+++-+.-++.+++.+-+.-....|..|. ......+..++...+.++++++.|+...+.... ..-.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444555555555566666665554444444331 123334556666666777777777766543211 12345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh----CCCCcc-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC------C
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQ----HGFTPN-----IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL------V 536 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~ 536 (711)
+..+...|.+..|+++|.-+..+..+ .++..- ......|.-++...|.+-.|.+.-++..+... .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66666777777777777666554432 111111 11112223344455665555555554433222 1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 537 DVISYNTIIAAYGQNKNLESMSSTVQEMQ 565 (711)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 565 (711)
.......+.+.|...|+.+.|+.-|++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33344556667777777777776666543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.43 E-value=8 Score=40.99 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=36.2
Q ss_pred HHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc--
Q 005161 335 ICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGI-RLDLIAFTVVVRMYVKA-- 411 (711)
Q Consensus 335 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-- 411 (711)
...+.-.|.++.|++++-. ......+..++...+..+.-.+-.+... ..+..... .|...-+..+|..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3444556777777777766 1122445555555554443222222111 22222110 11124466677777763
Q ss_pred -CChHHHHHHHHHHH
Q 005161 412 -GSLKDACAVLETME 425 (711)
Q Consensus 412 -~~~~~A~~~~~~~~ 425 (711)
.++..|+++|-.+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 57778888887763
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.83 Score=38.98 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
..+..+...|++.|+.+.|.+.|.++.+....+ ...+..+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566677777777777777777776655443 34566677777777777777666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.8 Score=39.72 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 577 NSMLDAYGKEGQMENFKNVLRRMKETS-CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
..+..++.+.|+.++|.+.++++.+.. ..........|+.++...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555566677777777777766431 111223455666677777777777777666543
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.8 Score=41.78 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
.++..+...|+.+.+...++.+...+|.....|..++.+|.+.|+...|+..|+.+..
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444445555666666666666666666566666666666666666666665555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.4 Score=35.92 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhcc
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFDH-----YTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIA 656 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 656 (711)
+.+.|++++|..-|..+++. +++.. ..|..-..++.+.+.++.|+.-..+.++ +.|+ ......-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhh
Confidence 45677888888877777764 23322 2444455667778888888888888877 3454 44444556778888
Q ss_pred CChHHHHHHHHHHHHcCCCCCc
Q 005161 657 GMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 657 g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
..+++|+.-|+++.+ ..|..
T Consensus 182 ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred hhHHHHHHHHHHHHH--hCcch
Confidence 888888888888887 56654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.6 Score=41.61 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----------------CHHHHH
Q 005161 570 SVSLEAYNSMLDAYGK-----EGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG----------------WINEVV 628 (711)
Q Consensus 570 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~ 628 (711)
..|...|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+=+.. .-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4455566666655543 2456666677777777888888888888887764432 122356
Q ss_pred HHHHHHHHCCCCCChHhHHHHHHHHhccCCh
Q 005161 629 GVLTELKECGLRPDLCSYNTLIKAYGIAGMV 659 (711)
Q Consensus 629 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 659 (711)
+++++|..+|+.||..+-..|+.++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 6666666666666666666666666665553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.5 Score=34.97 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 90 MITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
+...++..+++++|..-++..+.....-+. .+-..+.+.....|.+|+|..+++.....+. .......-.+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 344555555555555555554432111111 1112234444455555666555555544322 122222333455555
Q ss_pred CChHHHHHHHHHHHhc
Q 005161 168 SNMEAAQRLFLSIKDV 183 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~ 183 (711)
|+-++|+.-|+...+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666655555554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.7 Score=36.73 Aligned_cols=90 Identities=20% Similarity=0.124 Sum_probs=40.9
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNV----ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
++.+|++.+|..-|..+++.-..... ..|..-..++.+.+.++.|..--.+..+.+|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44455555555555555544211111 11222223344445555555555555555554444444444455555555
Q ss_pred HHHHHHHHHHHhCC
Q 005161 101 EKAEEVIRLIREDK 114 (711)
Q Consensus 101 ~~a~~~~~~~~~~~ 114 (711)
++|++-|..++..+
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 55555555554433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.83 E-value=3.1 Score=34.00 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=18.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
++..+...+........++.+...++......+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34444444444444444444444443333344444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.71 E-value=7.9 Score=38.30 Aligned_cols=150 Identities=9% Similarity=0.065 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 005161 439 DMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAK 518 (711)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 518 (711)
.++.-.-+..+...-++.-++.++.. |+-. ...++-+-.......++.+++++.++.|- .. +.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCA-dAYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCA-DAYILLAEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhh-HHHhhcccccccCHHHHHHHHHHHHHHHH----Hh-------hchhh
Confidence 34444445555665555555555542 2211 11122222334567788888887775431 00 00000
Q ss_pred cHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFS-VSLEAYNSMLDAYGKEGQMENFKNVL 596 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (711)
..+..-..++....... +-..+-..+..+..+.|+.++|++.++++.+.... ........|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00000001111111111 22333455777888999999999999999876322 23456778999999999999999999
Q ss_pred HHHHHc
Q 005161 597 RRMKET 602 (711)
Q Consensus 597 ~~~~~~ 602 (711)
.+..+.
T Consensus 319 ~kYdDi 324 (539)
T PF04184_consen 319 AKYDDI 324 (539)
T ss_pred HHhccc
Confidence 997654
|
The molecular function of this protein is uncertain. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.5 Score=37.40 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEM 669 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 669 (711)
+..+.+.|.+.||.+.|.+.+.++.+....|. ...+-.++......|++..+...+.++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444444444444444444444444333332 223334444444444444444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.15 Score=29.08 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=15.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 645 SYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 645 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+|..++.+|...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555566666666666665555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.89 Score=40.60 Aligned_cols=97 Identities=18% Similarity=0.250 Sum_probs=71.0
Q ss_pred CchhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------------HHHHHH
Q 005161 536 VDVISYNTIIAAYGQ-----NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQ----------------MENFKN 594 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~ 594 (711)
.+..+|...+..+.. .+..+-....++.|.+.|+..|..+|+.|+..+-+..- -+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 356667666666643 35566677778888888999999999999888876542 234778
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 595 VLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
++++|...|+.||..+-..+++++ |++.-+..-+.+|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~F---Gr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAF---GRWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHh---ccccccHHHHHHHH
Confidence 888888888999988888888887 44557766666654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.1 Score=40.84 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHHHH
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQF-----DGFSVSLEAYNSML 580 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 580 (711)
++..++..+...|+.+.+...++.+....|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455666777777777777777777777777777777777777777777777777776654 25555555544443
Q ss_pred H
Q 005161 581 D 581 (711)
Q Consensus 581 ~ 581 (711)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.22 Score=28.91 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=16.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 645 SYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 645 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777777777777744
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.82 E-value=14 Score=38.68 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHh
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRM-----YVKAGSLKDACAVLETMEK 426 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~ 426 (711)
...+...++...+.| +...-..+..+ +....+++.|+.+|+....
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 456677777766654 22222222222 2234567777777776633
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.15 Score=29.16 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=20.9
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 527 FSMAKKLGLVDVISYNTIIAAYGQNKNLESMS 558 (711)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 558 (711)
|++..+..|.++.+|..+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555666666777777777777777766664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.80 E-value=5.1 Score=33.48 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=69.1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHH
Q 005161 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG--WINEVVGVLTELK 635 (711)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 635 (711)
.++++.+.+.+++|+...+..+++.+.+.|++..-..++. .++-+|.......+-.+.... -..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455666667778888888888888888877655444333 333444433322221111111 1233444444433
Q ss_pred HCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHH
Q 005161 636 ECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWM 704 (711)
Q Consensus 636 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m 704 (711)
. .+..++..+...|++-+|+++.+.... -+......++.+..+.++...=..+++-.
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 245566777788888888877766422 12222344555665555544433444333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.77 E-value=8.7 Score=36.10 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHH
Q 005161 626 EVVGVLTELKECGLRPDLCSYNTLI 650 (711)
Q Consensus 626 ~A~~~~~~~~~~~~~p~~~~~~~l~ 650 (711)
++.++++.+.+.|+++....|..++
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4455555555555554444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.69 E-value=5.3 Score=33.39 Aligned_cols=33 Identities=6% Similarity=0.186 Sum_probs=16.0
Q ss_pred HHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 005161 38 FHMMLECDVQPNVATFGMLMGLYKKSWNVEEAE 70 (711)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 70 (711)
.+.+.+.+++|+...+..+++.+.+.|++..-.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 334444445555555555555555555444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.26 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=12.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
|..+..+|...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444455555555555554444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.43 E-value=12 Score=36.97 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 11 AKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
+..|+..|...+.-+-+.+.+.+...+|..|+... +.++..|..........+ +++.|..+|.+..+.+|.++..|..
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 33467777777776666666777777777777754 445555555444443333 3777777777777777776555433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.39 E-value=21 Score=39.61 Aligned_cols=24 Identities=8% Similarity=-0.114 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHH
Q 005161 680 TYTNMITALQRNDKFLEAIKWSLW 703 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~~~ 703 (711)
....|+.++.+.|..+.|.++-+.
T Consensus 1186 E~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1186 ELKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHH
Confidence 345677778888877777665443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.21 E-value=6.6 Score=33.40 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=42.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhcc
Q 005161 581 DAYGKEGQMENFKNVLRRMKETSCTFDHY----TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIA 656 (711)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 656 (711)
..+..+|++++|...++..... +.|.. .--.|.......|.+++|+..++...+.+. .......-..++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3345556666666666655532 11111 111223444555666666666655443221 112222334556666
Q ss_pred CChHHHHHHHHHHHHc
Q 005161 657 GMVEDAVGLVKEMREN 672 (711)
Q Consensus 657 g~~~~A~~~~~~~~~~ 672 (711)
|+-++|...|+...+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666666553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.35 Score=28.04 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLI 110 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~ 110 (711)
|..|..+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.13 E-value=11 Score=35.56 Aligned_cols=130 Identities=14% Similarity=0.264 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHhc--c----CcHHHHHHHHHHHHHcCC----CchhHHHHHHHHHHhcCCH-
Q 005161 486 DELSRVFDEMLQHGFTPNIITLNVMLDIYGK--A----KLFKRVRKLFSMAKKLGL----VDVISYNTIIAAYGQNKNL- 554 (711)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~- 554 (711)
++.+.+++.+.+.|+..+..++-+....... . ....++..+++.|++..+ ++..++..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455667777777776665554442222211 1 225677888888888777 344455555433 33333
Q ss_pred ---HHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 555 ---ESMSSTVQEMQFDGFSVSLE--AYNSMLDAYGKEGQ--MENFKNVLRRMKETSCTFDHYTYNIMIDI 617 (711)
Q Consensus 555 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (711)
+.+..+|+.+.+.|+..+-. ..+.++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 45667788888877665433 23333332222111 45778888888888888887777766543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.96 E-value=2.4 Score=35.41 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHH
Q 005161 661 DAVGLVKEMRENGIEPDKITYTNMIT 686 (711)
Q Consensus 661 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 686 (711)
+|...|++..+ ..|+...|..-+.
T Consensus 98 kA~~~FqkAv~--~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 98 KATEYFQKAVD--EDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHH
Confidence 33333333333 4455544444333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.62 E-value=6.8 Score=32.30 Aligned_cols=51 Identities=6% Similarity=-0.232 Sum_probs=26.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 516 KAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQF 566 (711)
Q Consensus 516 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 566 (711)
+.++.+++..++..+.-..|..+..-..-...+...|+|.+|+.+++++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345555666666555555443333333334444555555555555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.53 E-value=15 Score=36.03 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=49.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV---SLEAYNSMLDAYGKEGQMENFKNVLRRMKE 601 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (711)
....+|..++..+.+.|.++.|...+..+...+... .+.............|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888888899999999998888887654222 344455556677788888999988888876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.43 E-value=20 Score=37.40 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=51.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCCh
Q 005161 582 AYGKEGQMENFKNVLRRMKETSCTFDHY--TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMV 659 (711)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 659 (711)
++..-|+.++|..+++++.... .|-.. -.-.+..+|+-.|+-....+++.-.... ..-|..-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444566666666666666431 11111 1122334455555554444444443331 222333344444444455555
Q ss_pred HHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 660 EDAVGLVKEMRENGIEPDK--ITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 660 ~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
+....+.+-+.+. ..|-. .+-..|.-+|.-.|. .+|..+++-|.
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 5555555444432 23321 122233333433442 44555555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.24 E-value=4.7 Score=33.80 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhHcCCCCCHhhHHHHHHH---HHcc-------CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC-
Q 005161 31 VELGAKWFHMMLECDVQPNVATFGMLMGL---YKKS-------WNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL- 99 (711)
Q Consensus 31 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~-------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 99 (711)
|+.|.+-++.-...+ +.|...++.=..+ +++. ..+++|..-|+.+...+|....++..+.++|...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666666544444 4444444322222 2222 235667777788888888887888888877766542
Q ss_pred ----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 100 ----------YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 100 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+++|.+.|+...+.+ |+...|..-+.... +|-+++.++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~--P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDED--PNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 444555555544433 56666665555442 3555666665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.4 Score=40.02 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChh
Q 005161 393 GIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKD--IEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQE 470 (711)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 470 (711)
|.+.+..+...++..-....++++++..+-.+..... ..|+. +-...++.+ ..-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555556677778777777743211 11111 111122222 2224456666666656666666666
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
+++.+++.+.+.+++.+|.++.-.+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666665555543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.05 E-value=12 Score=34.24 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHhcCC--HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 64 WNVEEAEFAFNQMRKL--GLVCESAYSAMITIYTRLSL--YEKAEEVIRLIRE-DKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 64 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
.-+.+|+.+|+..... =..++.....+++......+ ...--++.+-+.. .+..++..+...++..++..+++.+.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 3445555555532211 12234455555555554211 2222233333322 23445666777788888888888888
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHhhccCChHHHHHHHHH-----HHhcCCCCChhhHHHHHH
Q 005161 139 ELVLVSMREA-GFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS-----IKDVGLEPDETTYRSMIE 197 (711)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~ 197 (711)
.+++...... ++..|...|...++.....|+..-...+.++ +.+.++..+...-..+-.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 8888877665 5566777888888888888888777777664 344455444444444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.66 Score=26.27 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhcchHHHHHHHHHHHHHhCcC
Q 005161 679 ITYTNMITALQRNDKFLEAIKWSLWMKQIGLQ 710 (711)
Q Consensus 679 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 710 (711)
..+..+..++...|++++|++.+++..+...+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35778899999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.53 E-value=6.1 Score=29.33 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 592 FKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
..+-++.+....+.|++....+.+.+|.+.+|+..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445556666666666666666666666666665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.99 Score=25.58 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
|..++.+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.7 Score=42.11 Aligned_cols=81 Identities=17% Similarity=0.076 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMID 371 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (711)
+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+....+-....+.| +. |...-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHH
Confidence 44556777777777777777776665543 24444555555555544444444433333 11 11222
Q ss_pred HHHccCCHHHHHHHHH
Q 005161 372 TYSVMGMFTEAEKLYL 387 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~ 387 (711)
++...|+++++.+++.
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3445566666655543
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.98 E-value=24 Score=34.41 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVE--EAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
-.+++..|...|++.-|..-+.++=.+. -.......|+.+....++-+ .|--++..+-..-..+...+..++..+.
T Consensus 53 ~~sii~eyfstgdv~vaa~dl~elg~se--yhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~ 130 (645)
T KOG0403|consen 53 AVSIIDEYFSTGDVVVAASDLKELGSSE--YHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLE 130 (645)
T ss_pred HHHHHHHHccCCCchhhHHHHHHhcccc--ccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3578899999999988765554442221 12233345555555444433 3444444444433344556666666665
Q ss_pred hcCC
Q 005161 96 RLSL 99 (711)
Q Consensus 96 ~~~~ 99 (711)
..++
T Consensus 131 s~dd 134 (645)
T KOG0403|consen 131 SADD 134 (645)
T ss_pred hccc
Confidence 5554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=21 Score=33.41 Aligned_cols=179 Identities=8% Similarity=-0.033 Sum_probs=89.9
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY----EKAEEVIRLIREDKVVPNLENW 122 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 122 (711)
.+|..+....+..+...|..+.. ..+..+.... +.......+.++.+.|.. .++...+..+...+ ++....
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~-~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVF-RLAIELCSSK--NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHH-HHHHHHHhCC--CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHH
Confidence 45666666677777666653332 3333332221 234455556666666653 45666666654433 444455
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 005161 123 LVMLNAYSQQGKL-----EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIE 197 (711)
Q Consensus 123 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 197 (711)
...+.++...+.- ..+...+..... .++..+-...+.++++.++ ..+...+-.+.+ .+|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 4555555544321 223333333333 3355555566666666665 345555555444 244444444455
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCH
Q 005161 198 GWGRAG-NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 198 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (711)
++.+.+ +.+.+...+..+.. .++..+-...+.++.+.++.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK 222 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh
Confidence 554432 13345555555543 23555555566666666663
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.69 E-value=12 Score=30.43 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+++++++.+++.+.-..|.....-..-+..+...|++.+|..+|+.+...+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666655555544433344444555566666666666555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.7 Score=30.03 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
.+-++.+......|++....+.+.+|.+.+|+.-|.++|+-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.32 E-value=6 Score=36.28 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChH
Q 005161 568 GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET---SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLC 644 (711)
Q Consensus 568 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 644 (711)
|.+.+..+...++..-....+++.+...+-++... -..|+... ...+..|. .-+.++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44445555555555555556666666666655431 11121111 11222222 234557777776667777777777
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 645 SYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 645 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+.+.++..+.+.+++.+|..+...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777777666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.81 Score=25.93 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555544
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.1 Score=39.45 Aligned_cols=92 Identities=14% Similarity=-0.014 Sum_probs=62.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
-.+-|.++|.+++|..-+.+.....|.+.+.+..-..+|.+...+..|..-.+..+..+-. -..+|...+.+-...|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 3455667777777777777777777766667777777777777777777766665543311 234566666666667777
Q ss_pred HHHHHHHHHHHHc
Q 005161 136 EEAELVLVSMREA 148 (711)
Q Consensus 136 ~~a~~~~~~~~~~ 148 (711)
.+|.+-.+..++.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 7777777777765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.46 E-value=0.046 Score=45.07 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
+..+.+.+..+.+...++.+...+...+....+.++..|++.++.+...+.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3444444444444444454444333334444455555555444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.00 E-value=15 Score=32.52 Aligned_cols=82 Identities=12% Similarity=-0.038 Sum_probs=38.4
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNV-ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEE 105 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (711)
-...+..|...|...+.. .|+. .-|..-+-++.+..+++.+..--.+..+..+........+..++.....+.+|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 334445555555554443 2333 2333334444445555555554444444444444444445555555555555555
Q ss_pred HHHHH
Q 005161 106 VIRLI 110 (711)
Q Consensus 106 ~~~~~ 110 (711)
.+++.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.45 E-value=26 Score=32.08 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
...|+++|..+..+. -...+-..++.++....+..+|...+...
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTt 192 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTT 192 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHH
Confidence 367788887777652 22334455666677777777766665543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.40 E-value=6.9 Score=33.86 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 005161 19 NTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV 82 (711)
Q Consensus 19 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 82 (711)
+..++.+.+.+...+|+...+.-++.. +.|......+++.||-.|+++.|..-++.+-+..+.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 344555555556666666555555543 444555555566666666666666555555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.03 E-value=49 Score=34.81 Aligned_cols=184 Identities=18% Similarity=0.106 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHH--HHH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC--
Q 005161 66 VEEAEFAFNQMRKLGLVCESAYSAM--ITI-YTRLSLYEKAEEVIRLIRE-------DKVVPNLENWLVMLNAYSQQG-- 133 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 133 (711)
...|.+.++...+.+.......... ..+ +....+.+.|+..|+.+.. .+ ...+...+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4678888888877765432222222 222 4566888999999988766 33 2234556666666643
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH--hcCCHHH
Q 005161 134 ---KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK-VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWG--RAGNYRE 207 (711)
Q Consensus 134 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~ 207 (711)
+.+.|..++......|. |+....-..+..... ..+...|.++|....+.|. ++...+..+.-... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHH
Confidence 56778888888888763 344333222222222 3467888888888887764 23222222221111 2346778
Q ss_pred HHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 208 AKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 208 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
|..++.+.-+.| .|........+..+.. +..+.+...+..+.+.+..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 888888888876 3222222222333333 6666666666665555543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.63 E-value=26 Score=38.21 Aligned_cols=116 Identities=10% Similarity=0.082 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHH--
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDK--VVP-NLENWLVMLNAYSQQGKL--EEAELVLVSMREAGFSPNIVAYN-- 158 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 158 (711)
-|..|+..|...|+.++|++++.+..+.. ..+ ....+..+++-+-+.+.. +-+.+.-+...+........++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36677777777777777777777766532 111 112233344444444443 44444444444332111111110
Q ss_pred ----------HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 005161 159 ----------TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR 201 (711)
Q Consensus 159 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 201 (711)
.-+-.|.+....+-+...++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1222355666777777888877765545566666777776654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.59 E-value=27 Score=31.43 Aligned_cols=207 Identities=13% Similarity=0.140 Sum_probs=129.7
Q ss_pred CCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Q 005161 392 SGIRLDLIAFTVVVRMY-VKAGSLKDACAVLETMEKQKDIEPD--AYLYCDMLRIYQQCGMLDKLSYLYYKILK---SGI 465 (711)
Q Consensus 392 ~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 465 (711)
.+..||...-|..-..- .+...+++|+.-|+...+..|-+.+ -.....++....+.+++++..+.+.+++. +.+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567766655443221 2445799999999988665543322 34556778889999999999999988753 222
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--
Q 005161 466 --TWNQELYDCVINCCARALPIDELSRVFDEMLQ-----HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-- 536 (711)
Q Consensus 466 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 536 (711)
..+..+.+.+++..+...+.+-..++++.-++ .+-..-..+-..+...|...+.+.+..+++.++.+....
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 34566788888877777777777776665442 111111223355677788888888888888887765441
Q ss_pred ---c-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 005161 537 ---D-------VISYNTIIAAYGQNKNLESMSSTVQEMQFDG-FSVSLEAYNSMLDA-----YGKEGQMENFKNVLRRM 599 (711)
Q Consensus 537 ---~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 599 (711)
| ...|..-++.|...++-.+...+|++..... .-|.+... -.++- ..+.|++++|..-|=++
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 1 2456666777888888777777887765432 12333222 22332 34567787776544443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.55 E-value=35 Score=32.77 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=57.5
Q ss_pred CCCHhhHHHHHHHHHcc---C---------CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 47 QPNVATFGMLMGLYKKS---W---------NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~---g---------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
|.|+.+|..++..--.. + -.+.-+.+++++.+.+|.+...+..++..+.+....++..+.++.+....
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 55677776666432111 1 13345567777777777666777777777777777777777777777655
Q ss_pred CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 005161 115 VVPNLENWLVMLNAYSQ---QGKLEEAELVLVSMR 146 (711)
Q Consensus 115 ~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 146 (711)
+. +...|...+..... .-.++....+|.+.+
T Consensus 96 ~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 96 PG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 33 45556555554433 223445555555444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.14 E-value=2 Score=25.68 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=19.3
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.05 E-value=8.5 Score=28.64 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 453 LSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496 (711)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 496 (711)
..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.03 E-value=14 Score=33.67 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMR 146 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 146 (711)
+.....|..+|.+.+|.++.+..+.-++- +...+-.++..++..|+--.|..-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445566666666666666665554432 44455556666666666555544444443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.2 Score=24.82 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=5.6
Q ss_pred ccCChHHHHHHHHHH
Q 005161 655 IAGMVEDAVGLVKEM 669 (711)
Q Consensus 655 ~~g~~~~A~~~~~~~ 669 (711)
+.|++++|.+.++++
T Consensus 12 ~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 333333333333333
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=84.69 E-value=12 Score=33.13 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=13.9
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 683 NMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 683 ~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
.++....+.|++++|.+|+.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4444555566666666666655443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.58 E-value=57 Score=34.36 Aligned_cols=120 Identities=10% Similarity=-0.022 Sum_probs=61.9
Q ss_pred HhccCcHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGLV--DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMEN 591 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 591 (711)
+...|+.++|..+.+++....-| ......+++.+|+..|+......++.-.... ...|..-...+.-++.-..+++.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhh
Confidence 34456666777777766554322 2223344566677777766655555544432 23333333333344445566666
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 592 FKNVLRRMKETSCTFDHY--TYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 592 A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
...+.+-+.+. ..|... +-.+|.-+|+-.|+ .+|+.+++-|..
T Consensus 590 ~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 590 LPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred chHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 66666666553 334333 22233334444443 567777777654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.48 E-value=10 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHH---cCCCCCcchHHHHHHHHHhcchHHHH
Q 005161 658 MVEDAVGLVKEMRE---NGIEPDKITYTNMITALQRNDKFLEA 697 (711)
Q Consensus 658 ~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~A 697 (711)
+.++++.++.+..+ .+-.+|+..+..|+..+.+.|+++.|
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444432 11133444444455555555554444
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.48 E-value=14 Score=27.21 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=29.2
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 005161 73 FNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQG 133 (711)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 133 (711)
++.....+|.+..+...+...+...|++++|++.+-.+.+.+... +...-..++..+.-.|
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 334444555555566666666666666666666666655544332 2233334444443333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.37 E-value=6.1 Score=36.65 Aligned_cols=96 Identities=18% Similarity=0.091 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS 168 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (711)
--.+-|.++|+|++|+..|..-....+. |+.++.....+|.+..++..|..-....+..+ +.-+..|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999987765533 77888888999999999998887777776653 223445666666656678
Q ss_pred ChHHHHHHHHHHHhcCCCCC
Q 005161 169 NMEAAQRLFLSIKDVGLEPD 188 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~ 188 (711)
+..+|.+-++..... +|.
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 899999999988874 455
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.30 E-value=2.2 Score=25.50 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=23.9
Q ss_pred chHHHHHHHHHhcchHHHHHHHHHHHHH
Q 005161 679 ITYTNMITALQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 679 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 706 (711)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.28 E-value=2.8 Score=23.31 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 681 YTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 681 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
+..+..++.+.|++++|.+.++++.+.-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45678889999999999999999988754
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.25 E-value=66 Score=34.83 Aligned_cols=224 Identities=10% Similarity=0.018 Sum_probs=115.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCcc----H---HHHHHHHH-HHhccCcHHHHHHHHHHHHHcCC-----CchhHHHHHHH
Q 005161 480 ARALPIDELSRVFDEMLQHGFTPN----I---ITLNVMLD-IYGKAKLFKRVRKLFSMAKKLGL-----VDVISYNTIIA 546 (711)
Q Consensus 480 ~~~~~~~~a~~~~~~~~~~~~~~~----~---~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~ 546 (711)
....++.+|..+..++...--.|+ . ..++.+-. .....|+++.|.++.+.....-+ +....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345667777777776654211111 1 12222221 22357888888888887766554 34556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHH--HHHHhcCCH--HHHHHHHHHHHHc--CCCC----CHHHHHH
Q 005161 547 AYGQNKNLESMSSTVQEMQFDGFSVSLEA---YNSML--DAYGKEGQM--ENFKNVLRRMKET--SCTF----DHYTYNI 613 (711)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~--~~A~~~~~~~~~~--~~~~----~~~~~~~ 613 (711)
+..-.|++++|..+..+..+..-.-+... |..+. ..+...|+. ++....+...... .-.| -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 78888999988887776655421222222 22222 234455632 2333333332221 0111 1223344
Q ss_pred HHHHHhh-cCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHhccCChHHHHHHHHHHHHcCCCC----CcchHHHHHH
Q 005161 614 MIDIYGE-QGWINEVVGVLTELKECGLRPDLCS--YNTLIKAYGIAGMVEDAVGLVKEMRENGIEP----DKITYTNMIT 686 (711)
Q Consensus 614 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~ 686 (711)
+..++.+ .+.-.++..-++--......|-... +..|+.++...|+.++|...+.++......+ +.......++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444443 1222233333332222222222222 2367788889999999999988887543333 2222223333
Q ss_pred HH--HhcchHHHHHHHHHH
Q 005161 687 AL--QRNDKFLEAIKWSLW 703 (711)
Q Consensus 687 ~~--~~~~~~~~A~~~~~~ 703 (711)
.. ...|+.++|..++.+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 32 456888888777665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.07 E-value=32 Score=35.10 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=50.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005161 550 QNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVG 629 (711)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (711)
+.|+.+.|.++..+. .+..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445555555544432 2334455666666666666666666655543 3344444555555554444
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHH
Q 005161 630 VLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKE 668 (711)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 668 (711)
+-+...+.|. .|.-..+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444331 22333455566777766666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.93 E-value=15 Score=27.10 Aligned_cols=44 Identities=9% Similarity=0.208 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 453 LSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496 (711)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 496 (711)
+.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.91 E-value=42 Score=32.27 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE---QGWINEVVGVLT 632 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 632 (711)
.-+.+++++.+.+ +.+...+..++..+.+..+.+...+-|+++... .+-+...|...++.... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445666655553 445555666666666666666666667776654 13355566666654433 123445555554
Q ss_pred HHHH------CCC------CCC--h---HhHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 005161 633 ELKE------CGL------RPD--L---CSYNTLIKAYGIAGMVEDAVGLVKEMRENGI 674 (711)
Q Consensus 633 ~~~~------~~~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 674 (711)
+.++ .+. .++ . .++..+..-+..+|..+.|+.+++-+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 4432 111 011 0 1223333444578888888888888887544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.36 E-value=72 Score=34.57 Aligned_cols=226 Identities=8% Similarity=0.023 Sum_probs=117.2
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcCCCcc----Hh---hHHHHHH-HHHccCChhhHHHHHHHHhhc----CCCCcHHHHHH
Q 005161 301 MAYVKHGLIDDAMKVLGDKRWKDTVFE----DN---LYHLLIC-SCKDSGHLANAVKIYSHMHIC----DGKPNLHIMCT 368 (711)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~---~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 368 (711)
.......++++|..++.+....-..|+ .. .++.+-. .....|++++|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 334557888999888877654422221 11 2333322 334578889998888777543 12334455666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHH--HHHHHcCC--hHHHHHHHHHHHhcCCCC-----CcHHH
Q 005161 369 MIDTYSVMGMFTEAEKLYLNLKSSGIRLDL---IAFTVVV--RMYVKAGS--LKDACAVLETMEKQKDIE-----PDAYL 436 (711)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~--~~~~~~~~--~~~A~~~~~~~~~~~~~~-----~~~~~ 436 (711)
+..+..-.|++++|..+.....+..-..+. ..|..+. ..+...|. ..+....|.......... +-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 667777889999998888776654222232 2333332 23445663 233333344332221111 12233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCC----CccHHH
Q 005161 437 YCDMLRIYQQCGMLDKLSYLYYKILKSG----ITWNQELY--DCVINCCARALPIDELSRVFDEMLQHGF----TPNIIT 506 (711)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 506 (711)
+..+..++.+ .+.+..-.....+.+ ..+-.... ..++......|+.++|...++++..... .++...
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4444444444 333332222222221 22222222 2566777788999999988888775322 222222
Q ss_pred HHHHHH--HHhccCcHHHHHHHHHH
Q 005161 507 LNVMLD--IYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 507 ~~~l~~--~~~~~~~~~~a~~~~~~ 529 (711)
....+. .....|+.+.+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222 23457888777776655
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.98 E-value=4.2 Score=39.81 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 19 NTLIYACNKRGCVELGAKWFHMMLECDVQPNVATF-GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 19 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
-.-+......+.++.|..++.++++. .||...| ..-..++.+.+++..|+.=+.++.+.+|.....|..-..++.+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34556677788999999999999986 4554444 44447788999999999999999998887667777777777888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
+.+.+|+..|+.... +.|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 888888888887766 4466666666665554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.72 E-value=0.75 Score=37.82 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=56.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCC
Q 005161 579 MLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGM 658 (711)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 658 (711)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4566666777788888888887655455677777888888888777777776661 112333456777777888
Q ss_pred hHHHHHHHHHHH
Q 005161 659 VEDAVGLVKEMR 670 (711)
Q Consensus 659 ~~~A~~~~~~~~ 670 (711)
+++|.-++.++-
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 888887777754
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.54 E-value=12 Score=32.34 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHHHhcCCHHH
Q 005161 572 SLEAYNSMLDAYGKEGQMEN 591 (711)
Q Consensus 572 ~~~~~~~l~~~~~~~g~~~~ 591 (711)
++..+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 34444444444444444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.45 E-value=10 Score=32.96 Aligned_cols=75 Identities=9% Similarity=0.099 Sum_probs=46.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CchhHHHHHHHH
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL---VDVISYNTIIAA 547 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~ 547 (711)
.+..++.+.+.+..++++...++-++.+ +.+...-..+++.++-.|++++|..-++..-+..+ +....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556666777777777777666553 33444555567777777777777777766655554 344455555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.44 E-value=3.9 Score=22.99 Aligned_cols=27 Identities=37% Similarity=0.428 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
+|..+..+|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666666666666666666554
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.13 E-value=26 Score=28.54 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHhcCCHHHHHHHHHhhhhcC
Q 005161 303 YVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 303 ~~~~g~~~~a~~~~~~~~~~~ 323 (711)
+...|++++|..+|+++...+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccC
Confidence 344555555555555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.25 E-value=13 Score=37.51 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=92.1
Q ss_pred CchHhHHHHHHHHHhc--CChHHHHHHHHHHhHcCCCCCHhhHHH--HHHHHH-ccCCHHHHHHHHHHHHHcCCCc-hhH
Q 005161 13 LNFQLFNTLIYACNKR--GCVELGAKWFHMMLECDVQPNVATFGM--LMGLYK-KSWNVEEAEFAFNQMRKLGLVC-ESA 86 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-~~~ 86 (711)
|+..+...++...... -.-+-|..+|..|.. |+...|.. +...|- ..|+...|.+-+..+....|.. ...
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 3444444444433322 122445555655543 33333432 334443 4688888888887776655543 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYG 165 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (711)
...|.+.+.+.|..-.|-.++.+.+... ...+-++..+.+++....+++.|.+.|.+..+.. +.++..-+.|...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6677778888888888888888776654 2245567777888888899999999998888764 335666666665444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.07 E-value=83 Score=33.71 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=106.2
Q ss_pred HHHHHHHHHhH-cCCCCC--HhhHHHHHHHHH-ccCCHHHHHHHHHHHHHcCCCc--h----hHHHHHHHHHHhcCCHHH
Q 005161 33 LGAKWFHMMLE-CDVQPN--VATFGMLMGLYK-KSWNVEEAEFAFNQMRKLGLVC--E----SAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 33 ~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~ 102 (711)
.|+++++-+.+ ..++|. ..++..+..+|. ...+++.|+..+.+.......+ . .+-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34566666663 222222 334556666665 6788999999999875443222 1 23445677777777766
Q ss_pred HHHHHHHHHhCCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHh--hccCChHH
Q 005161 103 AEEVIRLIREDKVV----PNLENWLVM-LNAYSQQGKLEEAELVLVSMREAG---FSPNIVAYNTLMTGY--GKVSNMEA 172 (711)
Q Consensus 103 a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~ 172 (711)
|...+++..+.-.. +-...+..+ +..+...+++..|.+.++.+...- ..|...++..++.+. .+.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888876553211 122233333 333333478999998888876542 244455555555443 34566677
Q ss_pred HHHHHHHHHhcC---------CCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 005161 173 AQRLFLSIKDVG---------LEPDETTYRSMIEGW--GRAGNYREAKWYYKELKH 217 (711)
Q Consensus 173 a~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~ 217 (711)
+.+..+++.... -.|...+|..+++.+ ...|++..+.+.++++.+
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777776663321 123555666666554 456777777666665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.06 E-value=46 Score=30.74 Aligned_cols=62 Identities=5% Similarity=0.090 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLR 597 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (711)
++..+...++..++..+++.+-.++++..... +...|...|..++......|+..-..++.+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 34444455555555555555555555544433 334445555555555555555544444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.80 E-value=84 Score=33.59 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHcc
Q 005161 297 SILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDS 341 (711)
Q Consensus 297 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (711)
-.+|-.+.++|.+++|.++..+....- ......+...+..+...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhC
Confidence 355667778888888888774433222 12233455666666553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.59 E-value=63 Score=32.00 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=70.7
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-----------
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLD----------- 581 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------- 581 (711)
.+...|-|+.|..+-..-.-.+..-...-..+++.....++..-.+.+................+.+..
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (831)
T PRK15180 623 TLVNLGAWKDACTLAHMTLIRNSNITSLQSIMLRSIRHINNIPFLIDLIANVMSITLSFQNASMNKLFEKECRNVATRAL 702 (831)
T ss_pred hhhccchhhhhHHHHHHHHHhcCCchhHHHHHHHHHhhhcCchhHHHHHHHhHheeeeecchhHHHHHHHHHHHHHHHHH
Confidence 345567777776665543333322222333445555555554444443333222211111111111111
Q ss_pred HHH----hcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhhcC----CHHHHHHHHHHHHHCCCCCC---hHhH
Q 005161 582 AYG----KEGQMENFKNVLRRMKETSCTFDHYT----YNIMIDIYGEQG----WINEVVGVLTELKECGLRPD---LCSY 646 (711)
Q Consensus 582 ~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~---~~~~ 646 (711)
-|. ..|+.++|..++-.+.. +.||..- |..++..+.... ..-...+.++-.++. +..| ....
T Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 779 (831)
T PRK15180 703 KYVRQKKTEGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKL-LVFDSENAYAL 779 (831)
T ss_pred HHHHhhcccccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhh-eeeccchHHHH
Confidence 122 34788899888887765 6788652 334444332211 111111122222211 1111 1111
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMREN 672 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 672 (711)
....-......++..|+++++++.+-
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (831)
T PRK15180 780 KYAALNAMHLRDYTQALQYWQRLEKV 805 (831)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHhc
Confidence 11122233567888999999998874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.3 bits (209), Expect = 3e-17
Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 4/154 (2%)
Query: 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE---AGFSPNIVAY 157
+ + + ++ + L +L A +LV + Y
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168
Query: 158 NTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYY-KELK 216
N +M G+ + + + +KD GL PD +Y + ++ GR +++
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 217 HLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250
G K A L++ + +
Sbjct: 229 QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.1 bits (193), Expect = 3e-15
Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 4/174 (2%)
Query: 537 DVISYNTIIAAYGQNKNLESMSSTVQ---EMQFDGFSVSLEAYNSMLDAYGKEGQMENFK 593
L + + ++L+ YN+++ + ++G +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 594 NVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVG-VLTELKECGLRPDLCSYNTLIKA 652
VL +K+ T D +Y + G Q + L ++ + GL+ L+
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 653 YGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQ 706
A +++ + P + + ++ + D + K L +K
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 5e-15
Identities = 22/191 (11%), Positives = 56/191 (29%), Gaps = 5/191 (2%)
Query: 468 NQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLF 527
+E ++ L +D + Q + L L
Sbjct: 91 WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLL 150
Query: 528 ----SMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAY 583
+K L+ + YN ++ + + + + + ++ G + L +Y + L
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
Query: 584 GKEGQ-MENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD 642
G++ Q + L +M + +++ + V V P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 643 LCSYNTLIKAY 653
+ + L++
Sbjct: 271 PVNTSKLLRDV 281
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 9e-15
Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 4/162 (2%)
Query: 544 IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVL---RRMK 600
++ +L+ + + S + + Q+ ++L +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 601 ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVE 660
+ YN ++ + QG E+V VL +K+ GL PDL SY ++ G
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 661 DAVG-LVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWS 701
+ +++M + G++ + +++ R K
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 9e-11
Identities = 22/190 (11%), Positives = 59/190 (31%), Gaps = 5/190 (2%)
Query: 424 MEKQKDIEPDAYLYCDMLRIYQQCGMLDK---LSYLYYKILKSGITWNQELYDCVINCCA 480
Q + + L L +++ + ++Y+ V+ A
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKA-KLFKRVRKLFSMAKKLGL-VDV 538
R EL V + G TP++++ L G+ + + + + GL +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 539 ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRR 598
+ +++ + L+++ + +L + ++ +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 599 MKETSCTFDH 608
+K C F+
Sbjct: 297 LKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 4e-08
Identities = 20/192 (10%), Positives = 62/192 (32%), Gaps = 5/192 (2%)
Query: 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAF----NQM 76
L+ + +++ + + + + A Q
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 77 RKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136
+K L+ Y+A++ + R +++ V+ ++++ + P+L ++ L +Q +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 137 EA-ELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195
E L M + G + L++ + + ++A ++ + P +
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 196 IEGWGRAGNYRE 207
+
Sbjct: 278 LRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 5e-06
Identities = 39/301 (12%), Positives = 85/301 (28%), Gaps = 15/301 (4%)
Query: 299 LVMAYVKHGLIDDAMKVLGDKRW---KDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMH 355
+ + A +L K + ++Y+ ++ G V + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 356 ICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLN-LKSSGIRLDLIAFTVVVRMYVKAGSL 414
P+L + + L + G++L + V++ +A L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 415 KDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQ----- 469
K V T + P + +Y + G + + Q
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL 312
Query: 470 ELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSM 529
CV++ LP E+ + L+ L L + FS+
Sbjct: 313 ASRVCVVSVEKPTLPSKEVKH-ARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSL 371
Query: 530 AKKLGLVD-----VISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYG 584
L L+D + + A Q ++ +++ + F V + + + A
Sbjct: 372 YPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQ 431
Query: 585 K 585
Sbjct: 432 N 432
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 2e-05
Identities = 15/118 (12%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 6 RMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFG-MLMGLYKKSW 64
+ L ++N ++ ++G + M+ + + P++ ++ L + ++
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 65 NVEEAEFAFNQMRKLGLVCES-AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN 121
+ E QM + GL ++ + +++ R ++ + +V +P N
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 3e-04
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 635 KECGLRPDLCSYNTLIKAYGIAGMVEDAVGLV---KEMRENGIEPDKITYTNMITALQRN 691
+ L K + + A L+ R+ Y ++ R
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 692 DKFLEAIKWSLWMKQIGLQ 710
F E + +K GL
Sbjct: 179 GAFKELVYVLFMVKDAGLT 197
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 1e-11
Identities = 80/524 (15%), Positives = 153/524 (29%), Gaps = 192/524 (36%)
Query: 41 MLECDVQPNVATFGML-MGLYKKSWNVEEA--------EFAFN----QMRKLGLVCESAY 87
+LE NV G+L G K+W + + F ++ C S
Sbjct: 144 LLELRPAKNVLIDGVLGSG---KTWVALDVCLSYKVQCKMDFKIFWLNLKN----CNSP- 195
Query: 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVL--VSM 145
++ + +L R + + + L + E LVL V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ- 254
Query: 146 REAGFSPNIV-AYN----TLM-TGYGKVSN-MEAAQRLFLSIKDV--GLEPDETTYRSMI 196
+ A+N L+ T + +V++ + AA +S+ L PDE +S++
Sbjct: 255 -----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLL 307
Query: 197 EGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYED---EEGAVNTLDDMLNM 253
K+ L + +D E N
Sbjct: 308 -----------LKY----------------------LDCRPQDLPREVLTTNPR------ 328
Query: 254 GCQHSSILGTLLQAYEKAGRTDN--------VPRILKGSL-------YQHVLFNLTSCSI 298
SI+ ++ + DN + I++ SL Y+ +F+ S+
Sbjct: 329 ---RLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-MFD--RLSV 380
Query: 299 LVMAYVKHGLIDDA---MKVLGDKRWKDTVFED-----NLYH---LLICSCKDSGHLANA 347
A +L W D + D N H L+ K+S
Sbjct: 381 FP---------PSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-----T 425
Query: 348 VKIYS-HMHI---CDGKPNLHIMCTMIDTYSVM--------------------------- 376
+ I S ++ + + + LH +++D Y++
Sbjct: 426 ISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 377 ----GMFTEAEKLYLNLK--SSGIRLDLIAFTVV---------VRMYVKAGSLKDACAVL 421
T ++L+ + IR D A+ ++ Y + D
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKY 541
Query: 422 ETMEKQ-----KDIEPDAYL--YCDMLRIYQQCGMLDKLSYLYY 458
E + IE + Y D+LRI ++ + ++
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 84/616 (13%), Positives = 182/616 (29%), Gaps = 172/616 (27%)
Query: 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNL 227
+ RLF ++ E + +E R NY K+ +K + ++
Sbjct: 59 DAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRI-NY---KFLMSPIK---TEQRQPSM 107
Query: 228 YTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQ 287
T Y ++ D + N Q + K NV R+ +
Sbjct: 108 MT-----RMYIEQ------RDRLYNDN-----------QVFAK----YNVSRLQPYLKLR 141
Query: 288 HVLFNLTSCSILVMAYVKHG--------LIDDAMKVLGDKRWKDTVFEDNLYHLLICSC- 338
L L +++ G + A+ V + + + ++ L + +C
Sbjct: 142 QALLELRPAKNVLI----DGVLGSGKTWV---ALDVCLSYKVQC-KMDFKIFWLNLKNCN 193
Query: 339 KDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYL----NLKSSGI 394
L K+ + PN + +AE L ++ +
Sbjct: 194 SPETVLEMLQKLLYQI-----DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 395 RLD-------LIAFTVVVRMYV--KAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQ 445
L AF + ++ + + + D + T D ++ +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 446 QC-GM-LDKLSYLYYKI-----------LKSGI-TWNQ-ELYDC-----VINCCARALPI 485
+ L ++ G+ TW+ + +C +I L
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 486 DELSRVFDEMLQHGFTPNI-ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTI 544
E ++FD + F P+ I + L + + V + + K LV+
Sbjct: 369 AEYRKMFDRLSV--FPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVE------- 418
Query: 545 IAAYGQNKNLESMSSTVQEMQFDGFSVSLEA----YNSMLDAYGKEGQMENFKNVLRRMK 600
K + + ++ + + V LE + S++D Y N+ +
Sbjct: 419 -------KQPKESTISIPSIYLE-LKVKLENEYALHRSIVDHY----------NIPKTFD 460
Query: 601 ETSCT---FDHYTYN----------------IMIDIYGEQGWINEVVGVLTELKECGLRP 641
D Y Y+ + ++ + ++ E K +R
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--------EQK---IRH 509
Query: 642 DLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWS 701
D ++N +G + + + +K + I + Y ++ A+ FL I+ +
Sbjct: 510 DSTAWNA-------SGSILNTLQQLKFYKPY-ICDNDPKYERLVNAIL---DFLPKIEEN 558
Query: 702 LW------MKQIGLQD 711
L + +I L
Sbjct: 559 LICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 70/235 (29%)
Query: 64 WN---VEEAEFAFNQMRKLGLVCESAYSAMITIYTR-LSLYEKAEEVIRLIREDKVVPNL 119
W + N++ K LV + + I+I + L L K E L R
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------- 448
Query: 120 ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS 179
+++ Y+ + +L+ + + + + ++ + M + +FL
Sbjct: 449 -----IVDHYNIPKTFDSDDLIPPYLD--QYFYSHIGHH--LKNIEHPERMTLFRMVFL- 498
Query: 180 IKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNA--SNLYTLINLHAKY 237
++R + ++++H NA S L TL L Y
Sbjct: 499 ------------------------DFR---FLEQKIRHDSTAWNASGSILNTLQQLK-FY 530
Query: 238 ED--------EEGAVNTLDDML-NMG-----CQHSSILGTLLQA-----YEKAGR 273
+ E VN + D L + +++ +L L A +E+A +
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 12/194 (6%)
Query: 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN-LENWLVMLNAYSQQGKLEEAELVLVS 144
A ++ L ++ V+ P + ++ VL
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHGLT--PAQVVAIASHDGGKQALETMQRLLPVL-- 249
Query: 145 MREAGFSPN-IVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE-TTYRSMIEGWGRA 202
+ G P+ +VA + + G + ++ + + GL PD+ S G
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL--CQAHGLTPDQVVAIASHGGGKQAL 307
Query: 203 GNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL 261
+ + G P+ + + E + + L + +
Sbjct: 308 ETVQRLLPVLC--QAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 365
Query: 262 GTLLQAYEKAGRTD 275
+ +
Sbjct: 366 ASNGGGKQALETVQ 379
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 127 NAYSQQGKLEEAEL----VLVSMREAGFSPN----IVAYNTLMTGYGKVSNMEAAQRLF- 177
+ Y +QGK ++AE +L E F + +
Sbjct: 203 SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262
Query: 178 --LSIKDVGLE-PDE-TTYRSMIEGWGRAGNYREAKWYYKE 214
K ++ P TT +++ + R G + A+ +
Sbjct: 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 127 NAYSQQGKLEEAEL----VLVSMREAGFSPN----IVAYNTLMTGYGKVSNMEAAQRLF- 177
+ Y +QGK ++AE +L E F + +
Sbjct: 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236
Query: 178 --LSIKDVGLE-PDE-TTYRSMIEGWGRAGNYREAKWYYKE 214
K ++ P TT RS+ + R G A
Sbjct: 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 711 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.18 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.17 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.11 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.09 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.89 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.89 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.74 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.72 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.71 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.65 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.56 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.42 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.42 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.23 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.14 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.13 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.97 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.9 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.86 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.76 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.67 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.39 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.29 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.26 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.21 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.2 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.93 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.71 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.53 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.14 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.11 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.65 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.59 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.99 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.58 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.68 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.06 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.16 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.97 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.59 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.45 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.84 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.63 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.35 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.63 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.83 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.77 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 86.86 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.86 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.84 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.26 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.19 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.81 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.25 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.11 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.97 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=346.67 Aligned_cols=298 Identities=11% Similarity=0.004 Sum_probs=138.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCA 480 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 480 (711)
|+.++..|.+.|++++|.++|+.+... +++..++..++..|.+.|++++|..+|+++.+.+.. +..++..++.++.
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 333344444444444444444444222 244444444444444444444444444444443321 3344444444444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSST 560 (711)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 560 (711)
+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+.+.+..+.+..+|..++..|.+.|++++|+++
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555554444321 233444444444455555555555555544444444444455555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC---
Q 005161 561 VQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC--- 637 (711)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 637 (711)
|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 55444432 3344444444455555555555555555444431 233444445555555555555555555544442
Q ss_pred -CCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 638 -GLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 638 -~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+ ..| +..+|..++.+|.+.|++++|.++++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33343 34444555555555555555555555444 223 3344444555555555555555555544443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=342.04 Aligned_cols=309 Identities=11% Similarity=-0.008 Sum_probs=169.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCC
Q 005161 370 IDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGM 449 (711)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 449 (711)
+..|.+.|++++|.++|+.+.+. +++..+++.++.+|.+.|++++|.++|+.+.... +.+..++..++.++.+.|+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTC
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCC
Confidence 33333344444444444433332 2334444444444444444444444444443221 1233334444444444444
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005161 450 LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 529 (711)
+++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+.
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444322 2234444445555555555555555555554432 23445555666666666666666666666
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SCT 605 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 605 (711)
+.+..+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 665555566666666666666666666666666666543 445566666666666666666666666666553 445
Q ss_pred CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHH
Q 005161 606 FD--HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYT 682 (711)
Q Consensus 606 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 682 (711)
|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+ +.|+ ...+.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~ 588 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASD 588 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHH
Confidence 65 5677777777777777777777777776642 22466777777777777777777777777776 5564 34555
Q ss_pred HHHHHH
Q 005161 683 NMITAL 688 (711)
Q Consensus 683 ~l~~~~ 688 (711)
.+..+|
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-28 Score=240.60 Aligned_cols=382 Identities=15% Similarity=0.097 Sum_probs=229.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
...+.+.|++++|.+.+..+++.. +.+...+..+..++...|++++|...++.+.+.+|....+|..++.+|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667777777777777777654 3445555666666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
+|+..|+++....+. +..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777665433 45567777777777777777777777777654 2344556666667777777777777777776
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHH
Q 005161 182 DVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL 261 (711)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 261 (711)
+..+ .+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++.....|....++
T Consensus 163 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 6432 3455666677777777777777777777766532 2344555556666666666666666666665555444444
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHcc
Q 005161 262 GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDS 341 (711)
Q Consensus 262 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (711)
..++..+...|++++|...+++++..+|. +..+ +..+...+.+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-----------------------------------~~~l~~~~~~~ 284 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDA-----------------------------------YCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHH-----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHH-----------------------------------HHHHHHHHHHc
Confidence 44445555555555555555444444333 3334 44444455555
Q ss_pred CChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005161 342 GHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVL 421 (711)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 421 (711)
|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|
T Consensus 285 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554432 3344555555555555666666666665555542 223455555556666666666666666
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHcC
Q 005161 422 ETMEKQKDIEPDAYLYCDMLRIYQQCG 448 (711)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 448 (711)
+.+.+.. +.+...|..+...+...|
T Consensus 363 ~~a~~~~--p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRIS--PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTC--TTCHHHHHHHHHHHHHTC
T ss_pred HHHHhhC--CCCHHHHHhHHHHHHHcc
Confidence 5554322 223444555555444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=237.49 Aligned_cols=383 Identities=15% Similarity=0.079 Sum_probs=305.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
+...+.+.|++++|.+.+..+.+.+|.+..++..+...+...|++++|...++......+. +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 3456678899999999999999999988888999999999999999999999988876644 778899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
++|...|+++.+.. +.+...|..++.++.+.|++++|...|+++.+..+ .+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998874 34667888999999999999999999999887643 34455677888888889999999999998
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
.+.. +.+..++..+...+...|++++|...++++.+.+|.....+..+...+...|++++|...+++++..+|. +..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 8763 2246778888888999999999999999988887766666666777777777777777666666655444 4445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSV 375 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (711)
+..+...+...|++++| ...|+++.+.. +.+..++..+...+.+
T Consensus 240 ~~~l~~~~~~~g~~~~A-----------------------------------~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLA-----------------------------------IDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHTTCHHHH-----------------------------------HHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHH-----------------------------------HHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 55555555555555544 44555554432 3456788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005161 376 MGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSY 455 (711)
Q Consensus 376 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 455 (711)
.|++++|.+.++.+.+.. +.+..++..+...+.+.|++++|...++.+.... +.+..++..+..++.+.|++++|..
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 4578899999999999999999999999986542 4567889999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccC
Q 005161 456 LYYKILKSGITWNQELYDCVINCCARAL 483 (711)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 483 (711)
.|+++.+... .+...+..+...+...|
T Consensus 361 ~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 9999998643 35667777777766554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=249.36 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=173.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
..+++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------------------------- 80 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------------------------- 80 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------------------------
Confidence 3456777777777777777777777777777777777777777777665542211
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
.+.+..++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 23345788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 175 RLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=245.87 Aligned_cols=214 Identities=15% Similarity=0.129 Sum_probs=160.5
Q ss_pred HHHHHHHHHhcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005161 453 LSYLYYKILKSGITWNQ-ELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAK 531 (711)
Q Consensus 453 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 531 (711)
+..+.+++.+.+....+ .+++.+|++|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444555555544433 356777888888888888888888888888888888888888887766543221
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 532 KLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTY 611 (711)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (711)
.+.+..++|.++|++|...|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 123345677888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 005161 612 NIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRN 691 (711)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 691 (711)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||..++..+...
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-24 Score=219.99 Aligned_cols=273 Identities=11% Similarity=-0.051 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----cCCC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005161 398 LIAFTVVVRMYVK---AGSLKDACAVLETMEK-----QKDI-------EPDAYLYCDMLRIYQQCGMLDKLSYLYYKILK 462 (711)
Q Consensus 398 ~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (711)
...+......+.. .|++++|+..|+.+.. .... +.+...+..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444444 7888888888887755 2111 22355677788888888899999888888887
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHH
Q 005161 463 SGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYN 542 (711)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 542 (711)
.... ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+.+..++.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH
Confidence 7644 7778888888888999999999999888764 445667788888888999999999999999888888888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHH
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSC-TFD----HYTYNIMIDI 617 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~ 617 (711)
.++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ...+..+...
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999999888763 55677888888999999999999999998876311 111 3378888888
Q ss_pred Hhh---cCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 618 YGE---QGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 618 ~~~---~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+.. .|++++|...++++.+. .|+ ..++..+..+|...|++++|...++++.+ +.|+.
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 988 89999999999999884 454 77888899999999999999999999988 66764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-24 Score=221.27 Aligned_cols=439 Identities=10% Similarity=-0.009 Sum_probs=257.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+......+.+.|++++|...|+.+++.+ |+...|..+..++.+.|++++|...|+.+.+.+|....+|..++.+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4567778889999999999999999999975 78999999999999999999999999999999998899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
...|++++|...|+.+...++. +.......+..+.+......+.+.+..+...+..|+......-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999999999887653 444444455544444434444444433322221111111111111111111111111
Q ss_pred HHHHHHHhcCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CccHhhHHH
Q 005161 175 RLFLSIKDVGL---------EPDETTYRSMIEGWGR---AGNYREAKWYYKELKH-----LGY--------KPNASNLYT 229 (711)
Q Consensus 175 ~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~ 229 (711)
.+...+..... ..+...+......+.. .|++++|...|+++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111111 1123444444444443 7888888888888877 311 123456667
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCH
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLI 309 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 309 (711)
+...+...|++++|...++++.+..+. ...+..++..+...|++++|...++.++...+. +..++..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCH
Confidence 777888888888888888888887777 777777778888888888888888877776554 556666777777777777
Q ss_pred HHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 310 DDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNL 389 (711)
Q Consensus 310 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 389 (711)
++|...+++....++. +...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776666554433 23344445555555555555555555554432 223344444444555555555555555444
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005161 390 KSSGIR-LD----LIAFTVVVRMYVK---AGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKIL 461 (711)
Q Consensus 390 ~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (711)
.+.... ++ ...+..+...+.. .|++++|...++.+.... +.+..++..+..++...|++++|...|++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 432110 00 1244444444444 445555555444443321 1223333344444444444444444444443
Q ss_pred h
Q 005161 462 K 462 (711)
Q Consensus 462 ~ 462 (711)
+
T Consensus 477 ~ 477 (514)
T 2gw1_A 477 D 477 (514)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=205.97 Aligned_cols=306 Identities=10% Similarity=0.013 Sum_probs=220.1
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+.+...+..+...+.+.|++++|..+|+.+++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456777888888888888888888888888764 556788888888888888888888888888888888788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNL---ENWLVM------------LNAYSQQGKLEEAELVLVSMREAGFSPNIVA 156 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (711)
.+|.+.|++++|...|+.+...++. +. .++..+ ...+.+.|++++|...++++.+.. +.+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 8888888888888888888876533 33 444444 344777888888888888888764 446777
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHH------
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTL------ 230 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------ 230 (711)
+..++.+|.+.|++++|...|+++.+..+ .+..+|..++..+...|++++|...|+++...... +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 88888888888888888888888776542 45677888888888888888888888888765221 23333333
Q ss_pred ------HHHHHcCCCHHHHHHHHHHHHHCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHH
Q 005161 231 ------INLHAKYEDEEGAVNTLDDMLNMGCQHS----SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300 (711)
Q Consensus 231 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 300 (711)
...+...|++++|...++++.+..+... ..+..++..+.+.|++++|...++.++...+. +..+|..+.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 336 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 5666677777777777777776655543 24555566666666666666666666655443 456666666
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcC
Q 005161 301 MAYVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~~~~~~ 323 (711)
.++...|++++|...++++....
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC
Confidence 66666666666666666665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-22 Score=204.82 Aligned_cols=392 Identities=14% Similarity=0.062 Sum_probs=246.0
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..+...+..++... +.+...+..+...+.+.|++++|...|+.+.+.+|....+|..++.+|...|++++|+..|+++.
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555553 56777888889999999999999999999999888888899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHhhccCChHHHHHH
Q 005161 112 EDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNI---VAYNTL------------MTGYGKVSNMEAAQRL 176 (711)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~ 176 (711)
+.++. +..++..++..|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87654 67788899999999999999999999998864 2233 555555 3347778888888888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 177 FLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
|+++.+..+ .+...+..++..+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+..+.
T Consensus 166 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888776543 466777778888888888888888888887652 235677777888888888888888888888877666
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCcc---HhhHHH
Q 005161 257 HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFE---DNLYHL 333 (711)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 333 (711)
....+..+.... .......++..+...|++++|...|+++....+... ...+..
T Consensus 244 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 244 HKRCFAHYKQVK-----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300 (450)
T ss_dssp CHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 554443330000 001112224445555555555555555544332210 123444
Q ss_pred HHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------
Q 005161 334 LICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVR------- 406 (711)
Q Consensus 334 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------- 406 (711)
+...+.+.|++++|+..++.+.+.. +.+..++..+..+|...|++++|...++.+.+.. +-+...+..+..
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhc
Confidence 5555555555555555555554432 2344555555555555566666666665555532 112333333331
Q ss_pred -----HHHHcC-----ChHHHHHHHHHH-Hhc-CCCCCc-------HHHHHHHHHHHHHcCCHHHH
Q 005161 407 -----MYVKAG-----SLKDACAVLETM-EKQ-KDIEPD-------AYLYCDMLRIYQQCGMLDKL 453 (711)
Q Consensus 407 -----~~~~~~-----~~~~A~~~~~~~-~~~-~~~~~~-------~~~~~~l~~~~~~~~~~~~a 453 (711)
.|...| +.+++.+.+++. .+. ....|+ ...+..+..+|...++.+..
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 122233 455666666652 111 111122 23567777778777776654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-23 Score=214.09 Aligned_cols=433 Identities=13% Similarity=0.033 Sum_probs=267.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHh
Q 005161 191 TYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEK 270 (711)
Q Consensus 191 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (711)
.|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++++..|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------- 91 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-------------- 91 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------
Confidence 34444555555555555555555555542 123444555555555555555555555555554444
Q ss_pred cCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHH
Q 005161 271 AGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKI 350 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 350 (711)
+..++..+...+...|++++|...|+.+ ...+.+. ...+..+...+....|...
T Consensus 92 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~a~~~ 145 (537)
T 3fp2_A 92 ---------------------HSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFD----GASIEPMLERNLNKQAMKV 145 (537)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCC----hHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555422 1111111 1112222233334455555
Q ss_pred HHHHhhcC------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--------HcCChH
Q 005161 351 YSHMHICD------GKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI-AFTVVVRMYV--------KAGSLK 415 (711)
Q Consensus 351 ~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~ 415 (711)
++.+.... ..|+... +..+....+.+.+...+...... .+... ....+...+. ..|+++
T Consensus 146 ~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 146 LNENLSKDEGRGSQVLPSNTS----LASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp HHHHCC-------CCCCCHHH----HHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHhCccccccccchHhH----HHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 55554321 1222222 22233344444443332222211 11111 1222222211 124677
Q ss_pred HHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 005161 416 DACAVLETMEKQKDIEPD-----AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSR 490 (711)
Q Consensus 416 ~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 490 (711)
+|+.+++.+....+..++ ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|+.
T Consensus 220 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 888888877554322221 2346666677788888888888888888764 336777788888888899999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005161 491 VFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFS 570 (711)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 570 (711)
.++++.+.. +.+...+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|...++++.+.. +
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 998888754 44677788888888889999999999999888888788888889999999999999999999888764 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHH
Q 005161 571 VSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS-----CTFDHYTYNIMIDIYGEQ----------GWINEVVGVLTELK 635 (711)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 635 (711)
.+...+..+...+...|++++|...++++.+.. .......+..+...+... |++++|...|+++.
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 567788888888999999999999998887531 011122244455666777 89999999999988
Q ss_pred HCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 636 ECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 636 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+. .|+ ..++..+..+|...|++++|...++++.+ +.|+.
T Consensus 456 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~ 495 (537)
T 3fp2_A 456 EL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTM 495 (537)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--C
T ss_pred Hh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCc
Confidence 84 454 77888899999999999999999999887 55653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=212.11 Aligned_cols=431 Identities=10% Similarity=0.027 Sum_probs=328.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
..+..++..+.+.|++++|...|++++..+|. +..++..+...|.+.|++++|++.++++...++. +...+..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 44566788888999999999999999888776 7899999999999999999999999999887654 567788899999
Q ss_pred HccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcC
Q 005161 339 KDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSG------IRLDLIAFTVVVRMYVKAG 412 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~ 412 (711)
...|++++|...|+.+ .. .|+.. ...+..+...+....+...++.+.... ..|+. ..+..+....
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence 9999999999999744 22 22211 112334445556678888888886641 12333 3344455666
Q ss_pred ChHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCC------hhhHHHHHH
Q 005161 413 SLKDACAVLETMEKQKDIEPDAY-LYCDMLRIYQ--------QCGMLDKLSYLYYKILKSGITWN------QELYDCVIN 477 (711)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 477 (711)
+.+.+...+... ....+... ....+...+. ..|++++|..+++++.+...... ..++..+..
T Consensus 175 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTS---SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCC---CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhc---cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHH
Confidence 666666555433 11223222 2222222221 23578999999999987653321 224666677
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 478 CCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESM 557 (711)
Q Consensus 478 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 557 (711)
.+...|++++|...++.+.+. .|+...+..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 888999999999999999986 455788888999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999998874 5567889999999999999999999999999863 556778999999999999999999999999873
Q ss_pred C-----CCCChHhHHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHH
Q 005161 638 G-----LRPDLCSYNTLIKAYGIA----------GMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 638 ~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
. .......+..+..++... |++++|+..++++.+ ..|+ ...+..+..+|.+.|++++|.+++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2 001122345556777777 999999999999998 5674 578899999999999999999999
Q ss_pred HHHHHhCc
Q 005161 702 LWMKQIGL 709 (711)
Q Consensus 702 ~~m~~~g~ 709 (711)
+++.+...
T Consensus 486 ~~al~~~~ 493 (537)
T 3fp2_A 486 EDSAILAR 493 (537)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhCC
Confidence 99887654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-20 Score=180.94 Aligned_cols=302 Identities=10% Similarity=0.008 Sum_probs=207.4
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
|...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45677888889999999999999999999875 55678888899999999999999999999999998888999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVV--PNLENWLVM------------LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNT 159 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (711)
+...|++++|...++.+....+. .+...+..+ ...+...|++++|...++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999999886541 134444444 467778888888888888888764 446777888
Q ss_pred HHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHH-----------
Q 005161 160 LMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLY----------- 228 (711)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------- 228 (711)
+...+...|++++|...|+++.+..+ .+..++..+...+...|++++|...|++..+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 88888888888888888888877543 46677778888888888888888888888765322 222221
Q ss_pred -HHHHHHHcCCCHHHHHHHHHHHHHCCCCChh----HHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHH
Q 005161 229 -TLINLHAKYEDEEGAVNTLDDMLNMGCQHSS----ILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAY 303 (711)
Q Consensus 229 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (711)
.+...+...|++++|...++++.+..+.... .+..++..+...|++++|...++.++..++. +..++..+...+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 316 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 1234455556666666666665555444331 1222344444444444444444444443322 333444444444
Q ss_pred HhcCCHHHHHHHHHhhh
Q 005161 304 VKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 304 ~~~g~~~~a~~~~~~~~ 320 (711)
...|++++|...|++..
T Consensus 317 ~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-17 Score=172.79 Aligned_cols=569 Identities=12% Similarity=0.091 Sum_probs=382.1
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDV--QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAM 90 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 90 (711)
.+..-....+++|...|.+.+|.+++++.+..+. ..+...-+.++.+..+. +.....++..+..... ...+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eI 1055 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDI 1055 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHH
Confidence 3445556778889999999999999999984421 13445555566665555 5566666665554222 3347
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
..++...|.+++|..+|++... .......++. ..+++++|.++.++. .++.+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 8888999999999999998521 2222233332 668899999988855 2577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
++|...|.+. .|...|..++..+.+.|++++|.+.|....+.. +++.....++.+|++.++++......
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999663 477788889999999999999999999887754 33333345888889998888544332
Q ss_pred HHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhh
Q 005161 251 LNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL 330 (711)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 330 (711)
.++. ...+..++..+...|++++|...|+.+ ..|..++..+.+.|++++|.+.+++.. +..+
T Consensus 1191 --~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~a 1252 (1630)
T 1xi4_A 1191 --NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRT 1252 (1630)
T ss_pred --hCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHH
Confidence 2232 345557999999999999999999864 478999999999999999999998772 4568
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005161 331 YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK 410 (711)
Q Consensus 331 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (711)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999998877653 3355567788999999999999999998887654 3345567667777766
Q ss_pred c--CChHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCCCChhh
Q 005161 411 A--GSLKDACAVLETMEKQKDIEP------DAYLYCDMLRIYQQCGMLDKLSYLYYKILKS-----------GITWNQEL 471 (711)
Q Consensus 411 ~--~~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~ 471 (711)
. ++..++.+.|. ...+++| +...|..++..|.+.|+++.|....-+-... ....++..
T Consensus 1327 y~peklmEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~el 1403 (1630)
T 1xi4_A 1327 FKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 1403 (1630)
T ss_pred CCHHHHHHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHH
Confidence 4 33444444444 3333444 5677999999999999999988432211100 11335666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQN 551 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (711)
|...+.-|. +....++.-+...+...+.+ ...+..+.+.|++.-+...+..+... .+...-..+...|...
T Consensus 1404 yykai~Fyl--~~~P~~lndLl~~l~~rlD~-----~R~V~l~~~~~~l~lik~yl~~vq~~--n~~~Vneal~el~iee 1474 (1630)
T 1xi4_A 1404 YYRAIQFYL--EFKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITE 1474 (1630)
T ss_pred HHHHHHHHH--hhChHHHHHHHHHhhhcCCh-----HHHHHHHHHcCChHHhHHHHHHHHHh--cchhhhHHHHHHhcCc
Confidence 666666665 22233333333333222222 23344555666666666666555432 2333334444445555
Q ss_pred CCHHHHHH------------HHHHHHHCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005161 552 KNLESMSS------------TVQEMQFDGFSVSLEAYNSMLD-AYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIY 618 (711)
Q Consensus 552 ~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (711)
++++.-.. +-.++.++ +..-+..+.. .|.+.|+|..|.+++++.. .|.-.|...
T Consensus 1475 ed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a 1541 (1630)
T 1xi4_A 1475 EDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYA 1541 (1630)
T ss_pred cchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHH
Confidence 55432221 11122211 1111233333 3445588888888887643 244567778
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHH
Q 005161 619 GEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGL 665 (711)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 665 (711)
.+.|+.+.+.+++.-..+. -+...|...+..|...=+++.++++
T Consensus 1542 ~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1542 SESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHH
Confidence 8889999888888887764 3456788888888888888877765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-16 Score=168.15 Aligned_cols=469 Identities=12% Similarity=0.070 Sum_probs=304.5
Q ss_pred HHHHHHHhcCChHHHHHHHHH------HhHcCCCCCHhhHHHHHHHHHccCCHHHHHHH-----------HHHHHHcCCC
Q 005161 20 TLIYACNKRGCVELGAKWFHM------MLECDVQPNVATFGMLMGLYKKSWNVEEAEFA-----------FNQMRKLGLV 82 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-----------~~~~~~~~~~ 82 (711)
.++..||...|+..|.-.|+. +++ +.-....|..+.+-+.+..+.+.-..+ .++.......
T Consensus 903 ~~vgkyce~rDp~la~iay~~g~~d~eli~--vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~ 980 (1630)
T 1xi4_A 903 RVVGKYCEKRDPHLACVAYERGQCDLELIN--VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALS 980 (1630)
T ss_pred HHHHHHHHhcCcchHHHHhcccCCcHHHHH--HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Confidence 345779999999988877764 111 122334455555555555555543332 2332222221
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 83 ---CESAYSAMITIYTRLSLYEKAEEVIRLIREDKV--VPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAY 157 (711)
Q Consensus 83 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (711)
++.-....++.|...|.+.+|+++++++.-.+. .-+...-+.++.+..+. +..+..+...+..+. + .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---H
Confidence 134456777888888999999999988874321 12334445566666555 455566655555432 1 3
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 158 NTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
..+...+...|.+++|..+|++... .....+.++. ..|++++|.+++++. -++.+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 3467777888888999888887532 2222233332 567888888888755 2466788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 238 EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLG 317 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 317 (711)
|++++|...|.+. .....+..++..+.+.|++++|.+.+..+......+ ...+.++..|++.+++++......
T Consensus 1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHHh
Confidence 8888888888653 344667778888888888888888888777655332 233348888888888875444431
Q ss_pred hhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 005161 318 DKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 397 (711)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 234445667888888888888888888874 378888888888888888888887662 5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 005161 398 LIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVIN 477 (711)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (711)
..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+-+..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 678888888888888888888876654 2355566688888888888888888887776554 334445555555
Q ss_pred HHHcc--CCHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHHhccCcHHHHHHHHHHHHH------------cCCCc
Q 005161 478 CCARA--LPIDELSRVFDEMLQHGFT------PNIITLNVMLDIYGKAKLFKRVRKLFSMAKK------------LGLVD 537 (711)
Q Consensus 478 ~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~ 537 (711)
.+++. ++..++.+.|..-.. ++ .+...|..+...|.+.|+++.|....-.-.. ..+.+
T Consensus 1323 LyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n 1400 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN 1400 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccccc
Confidence 55443 345555555543322 22 2466778888888888888888733211110 12346
Q ss_pred hhHHHHHHHHHHh
Q 005161 538 VISYNTIIAAYGQ 550 (711)
Q Consensus 538 ~~~~~~l~~~~~~ 550 (711)
+..|...+..|..
T Consensus 1401 ~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1401 VELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666663
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-19 Score=177.65 Aligned_cols=334 Identities=16% Similarity=0.083 Sum_probs=232.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+...|++++|...|+.+.+.+|....++..++.++...|++++|...++++...++. +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 45667788888999999999999999999999988899999999999999999999999998886644 66788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFS--PNIVAYNTL------------MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRS 194 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (711)
+...|++++|...++++.+..+. .+...+..+ ...+...|++++|...|+++.+..+ .+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 99999999999999999886420 244445444 4566667777777777777666543 35566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCC
Q 005161 195 MIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRT 274 (711)
Q Consensus 195 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (711)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+.....+..+....
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------ 232 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------ 232 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------
Confidence 6777777777777777777776652 234556666666677777777777777776666555443222111100
Q ss_pred CcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccH---hhHHHHHHHHHccCChhhHHHHH
Q 005161 275 DNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFED---NLYHLLICSCKDSGHLANAVKIY 351 (711)
Q Consensus 275 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 351 (711)
.......+...+.+.|++++|...+++.....+.... ..+..+...+...|++++|...+
T Consensus 233 -----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 233 -----------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp -----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1111223355667777777777777776665443111 22445666777788888888888
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005161 352 SHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK 410 (711)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (711)
+...+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+..+...
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8777653 4466777888888888888888888888888763 2245555555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=175.70 Aligned_cols=289 Identities=12% Similarity=0.067 Sum_probs=201.8
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
+.+.+..++......+...|++++|.++|+.+++.. +.+...+..++.++...|++++|...++++.+.+|....+|..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 445566777777778888888888888888887765 4455666667777778888888888888888887777778888
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 005161 90 MITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS 168 (711)
Q Consensus 90 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (711)
+...+...| ++++|...|+++...++. +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 888888888 788888888887776544 45667777888888888888888888887764 334566666777788888
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CccHhhHHHHHHHHHcCCCH
Q 005161 169 NMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGY--------KPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~ 240 (711)
++++|...|++..+..+ .+...+..+...+...|++++|...++++.+... .....++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 88888888888776543 4566777777888888888888888877765410 22244666677777777777
Q ss_pred HHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHH
Q 005161 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAY 303 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (711)
++|...++++.+..+.....+..++..+...|++++|...+++++...+. +..++..+...+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 77777777777666555555555555555555555555555555554443 444444444444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-18 Score=176.64 Aligned_cols=416 Identities=12% Similarity=0.076 Sum_probs=211.4
Q ss_pred HHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005161 39 HMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN 118 (711)
Q Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (711)
+..++.. +-+...|..++.. .+.|+++.|..+|+++.+..|.+...|..++..+.+.|++++|..+|++++... |+
T Consensus 3 e~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CC
T ss_pred hhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC
Confidence 4444443 3456666666663 556677777777777777666666667777777777777777777777666544 45
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHhhc---------cCChHHHHHHHHHHHh
Q 005161 119 LENWLVMLNAY-SQQGKLEEAEL----VLVSMREA-GFS-PNIVAYNTLMTGYGK---------VSNMEAAQRLFLSIKD 182 (711)
Q Consensus 119 ~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 182 (711)
...|...+... ...|+.+.|.+ +|+..+.. |.. ++...|...+....+ .|+++.|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 55555554322 23455555443 55554432 322 244555555554432 5667777777777666
Q ss_pred cCCCCCh---hhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hcC---CCcc--------HhhHHH
Q 005161 183 VGLEPDE---TTYRSMIEGW-------------GRAGNYREAKWYYKELK------HLG---YKPN--------ASNLYT 229 (711)
Q Consensus 183 ~~~~~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~ 229 (711)
. |+. ..|....... .+.+++..|..++.+.. +.. +.|+ ...|..
T Consensus 159 ~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 159 N---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp S---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred c---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 2 221 2222211100 12234455555544421 110 1221 112222
Q ss_pred HHHHHHcC----CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh
Q 005161 230 LINLHAKY----EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK 305 (711)
Q Consensus 230 l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (711)
.+...... ++... ..+.+..++++++...|. +...|..++..+.+
T Consensus 236 ~~~~e~~~~~~~~~~~~------------------------------~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTL------------------------------ITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQ 284 (530)
T ss_dssp HHHHHHHCSSCCSCSHH------------------------------HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCcchh------------------------------HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 22111110 11100 001233444444444333 44555555555443
Q ss_pred -------cCCHH-------HHHHHHHhhhh-cCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCc--HHHHHH
Q 005161 306 -------HGLID-------DAMKVLGDKRW-KDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPN--LHIMCT 368 (711)
Q Consensus 306 -------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 368 (711)
.|+++ +|..+|++... ..+ -+...|..++..+.+.|++++|..+|+++++. .|+ ...|..
T Consensus 285 ~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 361 (530)
T 2ooe_A 285 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred hchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence 45544 55555555543 221 13444555555555566666666666665553 222 235666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Q 005161 369 MIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRM-YVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQC 447 (711)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (711)
.+..+.+.|++++|.++|+...+.. +.+...+...... +...|+.++|..+|+...+.. +.+...|..++..+.+.
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhC
Confidence 6666666666666666666666542 1122233222211 224666777777776665443 23455666666666666
Q ss_pred CCHHHHHHHHHHHHhcCC-CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 005161 448 GMLDKLSYLYYKILKSGI-TW--NQELYDCVINCCARALPIDELSRVFDEMLQH 498 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 498 (711)
|+.+.|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 439 g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777666532 22 1235556666666667777777777766653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-19 Score=171.68 Aligned_cols=271 Identities=11% Similarity=0.016 Sum_probs=205.2
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005161 46 VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVM 125 (711)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (711)
.+.+...+..+...+...|++++|..+|+.+.+.+|....++..++.++...|++++|...++++....+. +..++..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 35667778888888899999999999999999999988888888999999999999999999999886654 66788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 005161 126 LNAYSQQG-KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN 204 (711)
Q Consensus 126 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 204 (711)
...+...| ++++|...++++.+.. +.+...|..+...+...|++++|...|++..+... .+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 89999999 9999999999999875 34677888999999999999999999999887653 345667778888999999
Q ss_pred HHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---------CChhHHHHHHHHHHhcCCCC
Q 005161 205 YREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC---------QHSSILGTLLQAYEKAGRTD 275 (711)
Q Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~ 275 (711)
+++|...|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .....+..++..+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998864 33567788888888899999999998888876532 11234445555555555555
Q ss_pred cHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 005161 276 NVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRW 321 (711)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 321 (711)
+|...++.++...+. +..++..+...+...|++++|.+.|++...
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 555555555544433 444445555555555555555555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-17 Score=166.70 Aligned_cols=428 Identities=9% Similarity=-0.000 Sum_probs=252.8
Q ss_pred HHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCc
Q 005161 247 LDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVF 326 (711)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 326 (711)
+++.++..|.....+..++. +.+.|+++.|..++++++...|. +...|..++..+.+.|++++|..+|++..... |
T Consensus 2 le~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 45555555655566666665 35566666777777766666555 56666666666666667777777666666554 2
Q ss_pred cHhhHHHHHHHH-HccCChhhHHH----HHHHHhhc-CCC-CcHHHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 005161 327 EDNLYHLLICSC-KDSGHLANAVK----IYSHMHIC-DGK-PNLHIMCTMIDTYSV---------MGMFTEAEKLYLNLK 390 (711)
Q Consensus 327 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 390 (711)
+...|...+... ...|+.+.|.+ +|+..+.. |.. ++...|...+..... .|+++.|..+|+...
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 444455444322 23455555544 44444322 222 233445554444333 455666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhcC
Q 005161 391 SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKI------LKSG 464 (711)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~ 464 (711)
+.........|..........+. ..+..++. ...+++..|..++... .+..
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~----------------------~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE----------------------DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH----------------------TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH----------------------HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 52100001222222111100110 00000000 0123344555544442 1111
Q ss_pred ---CCCC--------hhhHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCccHHHHHHHHHHHhc-------cC
Q 005161 465 ---ITWN--------QELYDCVINCCARA----LPI----DELSRVFDEMLQHGFTPNIITLNVMLDIYGK-------AK 518 (711)
Q Consensus 465 ---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 518 (711)
++|+ ...|...+...... ++. ..+..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 1222 12344333322211 222 36677888877642 4466677777776664 67
Q ss_pred cHH-------HHHHHHHHHHH-cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-h-hhHHHHHHHHHhcCC
Q 005161 519 LFK-------RVRKLFSMAKK-LGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVS-L-EAYNSMLDAYGKEGQ 588 (711)
Q Consensus 519 ~~~-------~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~ 588 (711)
+++ +|..++++..+ ..|.+...|..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 776 88888888886 56667888888888888889999999999988875 343 2 477888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHH
Q 005161 589 MENFKNVLRRMKETSCTFDHYTYNIMIDI-YGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLV 666 (711)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 666 (711)
+++|..+|++..+.. +.+...|...+.. +...|+.++|..+|++.++. .|+ +..|..++..+.+.|+.++|..+|
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 999999998888642 2223333222222 33578899999999988874 454 778888888888889999999999
Q ss_pred HHHHHcC-CCCC--cchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 667 KEMRENG-IEPD--KITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 667 ~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9988742 2332 236777777777788888888888887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-16 Score=157.96 Aligned_cols=352 Identities=13% Similarity=0.013 Sum_probs=252.2
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHc----cCChhhHHHHHHHHhhcCCCCcH
Q 005161 292 NLTSCSILVMAYVK----HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKD----SGHLANAVKIYSHMHICDGKPNL 363 (711)
Q Consensus 292 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 363 (711)
+..+...+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55566666666666 677777777777766553 33456666666666 677777777777776654 44
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCcHH
Q 005161 364 HIMCTMIDTYSV----MGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK----AGSLKDACAVLETMEKQKDIEPDAY 435 (711)
Q Consensus 364 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 435 (711)
..+..+...|.. .+++++|...|+...+.| +...+..+...|.. .++.++|.+.|+...+. .+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHH
Confidence 555566666666 677888888888777764 55666677777776 67788888888777543 3566
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCccHHHH
Q 005161 436 LYCDMLRIYQQ----CGMLDKLSYLYYKILKSGITWNQELYDCVINCCAR----ALPIDELSRVFDEMLQHGFTPNIITL 507 (711)
Q Consensus 436 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 507 (711)
.+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 67777777776 778888888888877765 45566666666664 678888888888887764 33445
Q ss_pred HHHHHHHhc----cCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 005161 508 NVMLDIYGK----AKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQN-----KNLESMSSTVQEMQFDGFSVSLEAYNS 578 (711)
Q Consensus 508 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 578 (711)
..+...|.. .++.++|...|+...+.+ ++..+..+...|... +++++|+..+++..+.| +...+..
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 555556655 788888888888877654 455667777777776 78888888888888765 3456666
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 005161 579 MLDAYGKEG---QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVVGVLTELKECGLRPDLCSYNTLIK 651 (711)
Q Consensus 579 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 651 (711)
+...|...| ++++|.+.+++..+.+ ++..+..+...|.. .+++++|...|++..+.| ++..+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776655 7788888888888753 56777788888877 788888888888888754 4667788888
Q ss_pred HHhc----cCChHHHHHHHHHHHHcC
Q 005161 652 AYGI----AGMVEDAVGLVKEMRENG 673 (711)
Q Consensus 652 ~~~~----~g~~~~A~~~~~~~~~~~ 673 (711)
.|.. .+++++|...|++..+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8887 788888988888888754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-16 Score=157.86 Aligned_cols=363 Identities=11% Similarity=0.009 Sum_probs=207.7
Q ss_pred HHHHHHHHhHcCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----cCCHHHHHH
Q 005161 34 GAKWFHMMLECDVQPNVATFGMLMGLYKK----SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR----LSLYEKAEE 105 (711)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 105 (711)
+.+.+....+.| +...+..+...|.. .++++.|...|++..+.+ +..++..+...|.. .+++++|.+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 345555555543 66677777777776 778888888888877753 35677777788877 788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHH
Q 005161 106 VIRLIREDKVVPNLENWLVMLNAYSQ----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK----VSNMEAAQRLF 177 (711)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 177 (711)
.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ ++..+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888877654 45566667777776 677888888888877754 56666777776665 67778888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHH
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGR----AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAK----YEDEEGAVNTLDD 249 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 249 (711)
++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...+.. .++.++|...+++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7777643 56666667777766 677777777777776654 34455555555553 5566666666666
Q ss_pred HHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhhhcCCC
Q 005161 250 MLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK----HGLIDDAMKVLGDKRWKDTV 325 (711)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 325 (711)
..+.+ +..++..+...|.. .++.++|+.+|++..+.+
T Consensus 249 a~~~~-------------------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-- 289 (490)
T 2xm6_A 249 SAEQG-------------------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-- 289 (490)
T ss_dssp HHTTT-------------------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--
T ss_pred HHHCC-------------------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--
Confidence 55432 23333444444444 455555555555544332
Q ss_pred ccHhhHHHHHHHHHcc-----CChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCC
Q 005161 326 FEDNLYHLLICSCKDS-----GHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMG---MFTEAEKLYLNLKSSGIRLD 397 (711)
Q Consensus 326 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~ 397 (711)
+...+..+...+... +++++|...|++..+.+ +...+..+...+...| ++++|.+.|+...+.+ +
T Consensus 290 -~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 290 -NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 122333333333333 44555555555444432 2233333333343333 4455555555554432 3
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 005161 398 LIAFTVVVRMYVK----AGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQ----CGMLDKLSYLYYKILKS 463 (711)
Q Consensus 398 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 463 (711)
...+..+...|.. .+++++|...|+...+. .+...+..+...|.. .++.++|...|++..+.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444444444544 44555555555544321 123334444444443 34444444444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-19 Score=173.13 Aligned_cols=257 Identities=11% Similarity=-0.045 Sum_probs=137.3
Q ss_pred hcCChHHHHH-HHHHHhHcCCC-C--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 27 KRGCVELGAK-WFHMMLECDVQ-P--NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 27 ~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
-.|+++.|.. .|+..++.... | +...+..+...+.+.|++++|...|+++.+.+|....++..++.+|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4456666666 66655543211 1 234566666777777777777777777777777666777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------------HHHhhcc
Q 005161 103 AEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL---------------MTGYGKV 167 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~ 167 (711)
|+..|+++...++. +..++..+...+...|++++|...++++.+..+. +...+..+ +..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777665543 5566667777777777777777777777765322 22222111 1122245
Q ss_pred CChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 005161 168 SNMEAAQRLFLSIKDVGLEP-DETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNT 246 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 246 (711)
|++++|...|+++.+..+.. +..++..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555433211 24445555555555555555555555555432 11344455555555555555555555
Q ss_pred HHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhh
Q 005161 247 LDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLY 286 (711)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (711)
++++.+..+.....+..++..+.+.|++++|...++.++.
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554444444444444444444444444444444433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-18 Score=166.79 Aligned_cols=267 Identities=10% Similarity=-0.078 Sum_probs=207.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+++.+.+|....+|..++.+|...|++++|+..|+++...++. +..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 44557888888999999999999999999999888889999999999999999999999998886644 67788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHhhccCChHHHHHHHHHHHhcCCC-CChhhHHHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNI----------VAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE-PDETTYRSMIE 197 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 197 (711)
|...|++++|...++++.+..+ .+. ..+..+...+.+.|++++|...|+++.+..+. ++..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887631 112 22334577888889999999999998876532 15778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcH
Q 005161 198 GWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNV 277 (711)
Q Consensus 198 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 277 (711)
.+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++++..|.....+..++..+...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988763 335778888888999999999999999999888887778888888888888888888
Q ss_pred HHHHHHhhhccCCc-----------chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005161 278 PRILKGSLYQHVLF-----------NLTSCSILVMAYVKHGLIDDAMKVLGD 318 (711)
Q Consensus 278 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 318 (711)
...+++++...+.. +..+|..+...+...|+.+.+.++..+
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888877654331 245677777777777777766665544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-17 Score=165.25 Aligned_cols=265 Identities=15% Similarity=0.042 Sum_probs=218.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...|+++.+.+|....++..++.+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35668888899999999999999999999975 56788899999999999999999999999999999889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLV---------------MLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAY 157 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 157 (711)
|...|++++|.+.++++....+. +...+.. .+..+...|++++|...++++.+..+.. +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999886644 2222211 2334448899999999999999875322 57889
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 158 NTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
..+...+.+.|++++|...|+++.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999987643 457889999999999999999999999998863 33577889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----------hhHHHHHHHHHHhcCCCCcHHHHHH
Q 005161 238 EDEEGAVNTLDDMLNMGCQH-----------SSILGTLLQAYEKAGRTDNVPRILK 282 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~ 282 (711)
|++++|...++++.+..+.. ...+..++..+...|++++|..+++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 99999999999998876554 3445555555555555555555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-18 Score=166.48 Aligned_cols=266 Identities=13% Similarity=0.006 Sum_probs=224.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..+|...|++++|...|+++.+.+|....+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568888999999999999999999999976 56788999999999999999999999999999999889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNL----------ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMT 162 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 162 (711)
|...|++++|+..++++....+. +. ..+..+...+.+.|++++|...++++.+..+.. +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999999875422 11 223345788889999999999999999875321 6889999999
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG 242 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (711)
.+...|++++|...|++..+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988653 467889999999999999999999999998863 2357789999999999999999
Q ss_pred HHHHHHHHHHCCCC------------ChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 005161 243 AVNTLDDMLNMGCQ------------HSSILGTLLQAYEKAGRTDNVPRILKG 283 (711)
Q Consensus 243 a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 283 (711)
|...++++.+..+. ...++..+...+...|+.+.+..+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999887654 246788899999999999888887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=159.91 Aligned_cols=279 Identities=13% Similarity=0.002 Sum_probs=146.2
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+......+...|++++|..+|+.+++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++.+|
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3344455555666666666666666666543 334555555556666666666666666666666555555666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HhhccCChHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL-MT-GYGKVSNMEA 172 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 172 (711)
...|++++|...++++....+. +...+..+...+ |+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665554322 111221210000 000000011 11 2445555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555554332 244455555555555556666655555555442 12344555555555555555555555555555
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCc-----------chhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 253 MGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF-----------NLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
..+.....+..++..+...|++++|...++.++...+.. +..+|..+...+.+.|++++|..++++.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554444455555555555555555555555554443332 4566777777777777777777776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-17 Score=156.46 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=97.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 141 (711)
+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. ++..+|..++.++...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~~-----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55667777777776622 236777777777777777777777542 3445666677777777777777776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK 221 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 221 (711)
++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 6655553 3445666677777777777777666663 255556777777777777777777777654
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHH
Q 005161 222 PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVM 301 (711)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 301 (711)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA~----------------------------------------~~~~Wk~v~~ 185 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKAN----------------------------------------STRTWKEVCF 185 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHHT----------------------------------------CHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHcC----------------------------------------CchhHHHHHH
Confidence 245566666666666666555555441 4556666666
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHcc--CCH
Q 005161 302 AYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVM--GMF 379 (711)
Q Consensus 302 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 379 (711)
+|...|+++.|......+. ..+.-...++..|.+.|.+++|+.+++..+... +.....|+-+.-.+++- ++.
T Consensus 186 aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp HHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666666644333211 222233446666666666666666666665443 34455555555444433 233
Q ss_pred HHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCChHHHHHHH
Q 005161 380 TEAEKLYLNLKSSGIRL------DLIAFTVVVRMYVKAGSLKDACAVL 421 (711)
Q Consensus 380 ~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 421 (711)
.+.++.|..- .+++| +...|..+...|.+.++++.|...+
T Consensus 260 ~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 260 REHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3333333211 12222 3556777888888888888777644
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=159.99 Aligned_cols=231 Identities=11% Similarity=-0.022 Sum_probs=158.9
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHH--
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAM-- 90 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-- 90 (711)
.+..++..+...+...|++++|...|+.+++.. +.+..++..+..++...|++++|...|+++.+..+.....+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence 367788888899999999999999999999875 56788889999999999999999999999999988776666555
Q ss_pred ------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 91 ------------IT-IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAY 157 (711)
Q Consensus 91 ------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (711)
.. ++...|++++|...++++....+. +..++..+...+...|++++|...++++.+.. +.+...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 33 466667777777777777665443 55666677777777777777777777776653 3355666
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----------cHhh
Q 005161 158 NTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP-----------NASN 226 (711)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~ 226 (711)
..+...+...|++++|...|+++.+..+ .+..++..+...+...|++++|...|+++.+..... +..+
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 6677777777777777777777665432 345566666666666777777777776665542221 2334
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 005161 227 LYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~ 247 (711)
+..+..++...|+.+.|..++
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 444445555555555444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-17 Score=156.27 Aligned_cols=281 Identities=13% Similarity=0.117 Sum_probs=125.6
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
+.|+.++|.++++++ +++.+|..|..++.+.|++++|.+.|.+. .+..+|..++..+...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 567899999999998 23359999999999999999999999764 2345899999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCC
Q 005161 107 IRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE 186 (711)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (711)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8877664 3456778899999999999999887774 367779999999999999999999999976
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHH
Q 005161 187 PDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQ 266 (711)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 266 (711)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+ .-...++.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a-d~l~~lv~ 215 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA-DELEELIN 215 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH-HHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH-hhHHHHHH
Confidence 46999999999999999999999998 278899999999999999999966555422 222 23446888
Q ss_pred HHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhc--CCHHHHHHHHHhhhhcCCCc------cHhhHHHHHHHH
Q 005161 267 AYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKH--GLIDDAMKVLGDKRWKDTVF------EDNLYHLLICSC 338 (711)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~ 338 (711)
.|.+.|++++|..+++..+..+.. ....|+-+...|++- +++.+.++.|..- -++.| +...|.-++-.|
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~a-h~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988877633 677888887777754 3344455544422 12211 234566666666
Q ss_pred HccCChhhHHH
Q 005161 339 KDSGHLANAVK 349 (711)
Q Consensus 339 ~~~~~~~~a~~ 349 (711)
...++++.|..
T Consensus 293 ~~~~e~d~A~~ 303 (449)
T 1b89_A 293 DKYEEYDNAII 303 (449)
T ss_dssp HHTTCHHHHHH
T ss_pred HhhchHHHHHH
Confidence 66666666655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-16 Score=158.73 Aligned_cols=384 Identities=9% Similarity=-0.054 Sum_probs=221.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKL---------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED----- 113 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 113 (711)
.....|+.|..++...|++++|++.|++..+. .+....+|+.+..+|...|++++|...++++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566788888888889999998888887653 3333567888888899999999998888876542
Q ss_pred C-CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hhccCChHHHHHHHHHHHhcCCC
Q 005161 114 K-VVP-NLENWLVMLNAYSQ--QGKLEEAELVLVSMREAGFSPNIVAYNTLMTG---YGKVSNMEAAQRLFLSIKDVGLE 186 (711)
Q Consensus 114 ~-~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 186 (711)
+ ..+ ...++.....++.. .+++++|...|++..+.. |.++..+..+..+ +...++.++|.+.|++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 111 23455555444444 356888999888888864 2355555555544 3445777888888888776543
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHH
Q 005161 187 PDETTYRSMIEGWGR----AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILG 262 (711)
Q Consensus 187 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 262 (711)
.+..++..+...+.. .|++++|...+++..... +.+..++..+...+...|+++.|...++++.+..|....++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 344555555444433 466778888888887763 235667777888888888888888888888888887777777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccC
Q 005161 263 TLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSG 342 (711)
Q Consensus 263 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (711)
.++..|...+....+. ............+..+.|...+++....++. +...+..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 6666654321100000 0000001111122345666666665554433 3345666667777777
Q ss_pred ChhhHHHHHHHHhhcCCCCcHH--HHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005161 343 HLANAVKIYSHMHICDGKPNLH--IMCTMID-TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACA 419 (711)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 419 (711)
++++|+..|++.++....+... .+..+.. .....|++++|+..|.+..+. .|+....... ...+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHH
Confidence 7777777777766554332221 1222221 234567777777777777764 2333222111 223334
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005161 420 VLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG 464 (711)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (711)
+++...... +.+..+|..+..+|...|++++|.+.|++.++.+
T Consensus 418 ~~~~~l~~~--p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN--GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC--C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444443332 4456677777777778888888888887777654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=148.82 Aligned_cols=257 Identities=13% Similarity=0.045 Sum_probs=183.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
++.....|++..|+..++........+.......+.++|...|+++.|+..++. .+++...++..++..+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456677888888888887765543111123445567788888888888876654 23334567777888888888888
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
+|++.++++...+..| +...+..+...+.+.|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887665333 455666677788888888888888876 457778888888888888888888888888
Q ss_pred HhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 181 KDVGLEPDETTY---RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 181 ~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++++..|..
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7754 443211 11223333457888888888888876 34467777788888888888888888888888888777
Q ss_pred hhHHHHHHHHHHhcCCCCc-HHHHHHHhhhccCC
Q 005161 258 SSILGTLLQAYEKAGRTDN-VPRILKGSLYQHVL 290 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 290 (711)
..++..++..+...|+.++ +.+.++++...+|.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777765 45777777766555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=150.20 Aligned_cols=253 Identities=11% Similarity=0.009 Sum_probs=189.9
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVC-ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEE 137 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 137 (711)
-....|+++.|+..++.+...+|.+ ......+.++|...|+++.|+..++. ...|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3446799999999988776666554 34667788999999999999886654 233566778888888888999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 138 AELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 138 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
|.+.++++...+. +.+...+..+..++...|++++|.+.|++ ..+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999888764 34666777777888999999999999987 3677788888999999999999999999998
Q ss_pred hcCCCccHhhH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcch
Q 005161 217 HLGYKPNASNL---YTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNL 293 (711)
Q Consensus 217 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 293 (711)
+.. |+.... ...+..+...|++++|..+|+++.+..|.....+..++..+.+.|++++|...+++++..+|. +.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~ 234 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HP 234 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 864 443211 123344445688888888888888887776677777777777777777777777777777665 66
Q ss_pred hHHHHHHHHHHhcCCHHH-HHHHHHhhhhcCC
Q 005161 294 TSCSILVMAYVKHGLIDD-AMKVLGDKRWKDT 324 (711)
Q Consensus 294 ~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 324 (711)
.++..++..+...|+.++ +.++++++...++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 677777777777777654 4566666655543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-15 Score=153.82 Aligned_cols=202 Identities=12% Similarity=0.032 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 005161 153 NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV--------GLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG----- 219 (711)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----- 219 (711)
....||.|..++...|++++|++.|++..+. .-.....+|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3445666666666666666666666654321 011234456667777777777777777776665421
Q ss_pred -CCc-cHhhHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCChhHHHHHHHH---HHhcCCCCcHHHHHHHhhhccCCcc
Q 005161 220 -YKP-NASNLYTLINLHAK--YEDEEGAVNTLDDMLNMGCQHSSILGTLLQA---YEKAGRTDNVPRILKGSLYQHVLFN 292 (711)
Q Consensus 220 -~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 292 (711)
..+ ...++.....++.. .+++++|...|+++++..|........+... +...++.++|.+.+++++..++. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 111 23344444433333 3467788888888887777766555555444 34456777888888877776655 5
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhh
Q 005161 293 LTSCSILVMAYVK----HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHI 356 (711)
Q Consensus 293 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 356 (711)
..++..+...+.. .|++++|.+.+++....++. +...+..+...+...|++++|+..+++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 5555555444433 33455555555554443332 233344444455555555555555555444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=137.04 Aligned_cols=199 Identities=14% Similarity=-0.024 Sum_probs=123.7
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+++...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...|+++.+.+|....++..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3455666677777777777777777777777654 455666677777777777777777777777777777777777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005161 92 TIYTRL-----------SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL 160 (711)
Q Consensus 92 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (711)
.++... |++++|+..+++..+.++. +..++..+...+...|++++|...+++.++.. .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 6777777777666665443 45566666666666677777776666666665 466666666
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
..++...|++++|...|++..+..+ .+...+..+...+...|++++|...|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666665432 34455566666666666666666666544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-12 Score=133.56 Aligned_cols=290 Identities=10% Similarity=0.063 Sum_probs=192.5
Q ss_pred ChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC---HHHHHHH
Q 005161 30 CVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL---YEKAEEV 106 (711)
Q Consensus 30 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 106 (711)
...+-...|+..+..+ +-|...|..++..+.+.+.++.+..+|+++....|.....|...+..-.+.++ ++.+.++
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3455666778888776 67999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHhhc--------
Q 005161 107 IRLIREDKV-VPNLENWLVMLNAYSQQGKL--------EEAELVLVSMRE-AGF-SP-NIVAYNTLMTGYGK-------- 166 (711)
Q Consensus 107 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~-------- 166 (711)
|++.+...+ .|+...|...+....+.++. +.+.++|+..+. .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999887652 36777887777665555543 334577877664 355 44 45788877765432
Q ss_pred -cCChHHHHHHHHHHHhcCCCCChhhHH---HHHHHHH----------hcCCHHHHHHHHHHHHhc--CCC---------
Q 005161 167 -VSNMEAAQRLFLSIKDVGLEPDETTYR---SMIEGWG----------RAGNYREAKWYYKELKHL--GYK--------- 221 (711)
Q Consensus 167 -~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~----------~~g~~~~A~~~~~~~~~~--~~~--------- 221 (711)
.++++.+..+|++........-..+|. .....+. ....+..|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 345788999999988632111122332 2211110 012334455555543321 110
Q ss_pred ------c-----c---HhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHH-H
Q 005161 222 ------P-----N---ASNLYTLINLHAKYE-------DEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVP-R 279 (711)
Q Consensus 222 ------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 279 (711)
| + ...|...+..-...+ ..+.+..+|++.+...+....++...+..+...|+.++|. .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 123444444333222 1234566788887777777777778888887888888886 8
Q ss_pred HHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 005161 280 ILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRW 321 (711)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 321 (711)
+++.++...|. +...|...+...-+.|++++|.++|+++..
T Consensus 366 il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 366 YLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88887765543 566677777777778888888888777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-15 Score=133.88 Aligned_cols=199 Identities=15% Similarity=-0.006 Sum_probs=126.8
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
+++...+..+...+.+.|++++|...|+++.+.+|....++..+..++.+.|++++|+..+++....++. +..++..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 5667777788888888888888888888888888888888888888888888888888888888876654 566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 127 NAYSQQ-----------GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 127 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
..+.+. |++++|...+++.++.. +.+...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 66666666666666653 2245556666666666666666666666666544 455556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665542 113444555555555555555555555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-15 Score=136.76 Aligned_cols=226 Identities=10% Similarity=0.003 Sum_probs=168.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-------hhHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-------ESAY 87 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 87 (711)
...+..+...+...|++++|...|+.+++.. .+...+..+..++...|++++|...|.++.+..+.. ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777788888888888888888888876 677788888888888888888888888887765543 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
..++.+|...|++++|...++++.... |+. ..+.+.|++++|...++.+.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 888888888888888888888877754 332 33555677888888888877753 33556677777777888
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 005161 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (711)
|++++|...|++..+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888888776543 356677777777888888888888888777653 224566777777777777777777777
Q ss_pred HHHHHCC
Q 005161 248 DDMLNMG 254 (711)
Q Consensus 248 ~~~~~~~ 254 (711)
+++.+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 7776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-17 Score=165.71 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 537 DVISYNTIIAAYGQNKNLESMSSTVQEMQF---DGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613 (711)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (711)
-..+|++++.+|++.|+.++|.++|.+|.+ .|+.||..+||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCC-HHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 614 MIDIYGEQGW-INEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 614 l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++.++++ +.++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 8888888876 467788888888888888888888777544433 344444444 3344443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-14 Score=139.99 Aligned_cols=248 Identities=9% Similarity=0.003 Sum_probs=188.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN-VEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
..+|..+...+...|++++|+..|+.+++.. +.+...|..+..++...|+ +++|+..|+++.+.+|.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4566667777888888999999999888875 5567788888888888886 9999999999998888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCChHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK-VSNMEA 172 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 172 (711)
+...|++++|+..|++++..++. +..+|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 88889999999999988887765 77888888888888899999999999888875 3477888888888877 555466
Q ss_pred H-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCC-------
Q 005161 173 A-----QRLFLSIKDVGLEPDETTYRSMIEGWGRAG--NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYE------- 238 (711)
Q Consensus 173 a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 238 (711)
| ...|++.....+ -+...|+.+...+...| ++++|++.+.++ +. ...+...+..+..++...|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777776543 35667777777777777 578888888777 32 2334566777777777653
Q ss_pred --CHHHHHHHHHHH-HHCCCCChhHHHHHHHHH
Q 005161 239 --DEEGAVNTLDDM-LNMGCQHSSILGTLLQAY 268 (711)
Q Consensus 239 --~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~ 268 (711)
..++|..+++++ .+.+|.....+..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 247778888777 666655555555444444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=134.29 Aligned_cols=225 Identities=12% Similarity=-0.008 Sum_probs=139.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PN----LENWL 123 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 123 (711)
...+..+...+...|++++|...|+.+.+.+ ....++..++.+|...|++++|.+.++++....+. ++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3455666677777777777777777777766 55667777777777777777777777776653321 11 35666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
.+...+...|++++|...++++.+.. |+. ..+.+.|++++|...++++....+ .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 67777777777777777777777652 332 234445666777777776665432 23445666666666667
Q ss_pred CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 005161 204 NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKG 283 (711)
Q Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 283 (711)
++++|...|+++.+... .+..++..+..++...|++++|...++++++..+.....+..++..+...|++++|...++.
T Consensus 154 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777776665432 24555666666666666666666666666665555444455555555555555555555544
Q ss_pred hhh
Q 005161 284 SLY 286 (711)
Q Consensus 284 ~~~ 286 (711)
++.
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-14 Score=139.29 Aligned_cols=248 Identities=10% Similarity=0.030 Sum_probs=189.8
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL-YEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
...|..+..++.+.|++++|+..|+++.+.+|....+|+.+..++...|+ +++|+..|++++..++. +..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 45677778888889999999999999999999989999999999999997 99999999999887766 77889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR-AGNYRE 207 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 207 (711)
+.+.|++++|...++++++.. +.+...|..+..++.+.|++++|...|+++.+..+ .+...|+.+...+.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999875 44788899999999999999999999999988664 467788888888888 555577
Q ss_pred H-----HHHHHHHHhcCCCccHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcC--------
Q 005161 208 A-----KWYYKELKHLGYKPNASNLYTLINLHAKYE--DEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAG-------- 272 (711)
Q Consensus 208 A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 272 (711)
| +..|++...... -+...|..+..++...| +.++|...+..+ +..+.....+..++..+.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 477888877532 24567777777777777 577787777776 555555556666666666553
Q ss_pred -CCCcHHHHHHHh-hhccCCcchhHHHHHHHHH
Q 005161 273 -RTDNVPRILKGS-LYQHVLFNLTSCSILVMAY 303 (711)
Q Consensus 273 -~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 303 (711)
..++|.++++.+ ...+|. ....|..+...+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 135566666665 444433 334444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-14 Score=141.50 Aligned_cols=377 Identities=12% Similarity=0.026 Sum_probs=193.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCCh---hhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc
Q 005161 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHL---ANAVKIYSHMHICDGKPNLHIMCTMIDTYSV 375 (711)
Q Consensus 299 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (711)
+...+.+.|++++|.++|++..+.+. ...+..+...+...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 34444555555555555555544432 11223333333444444 5666666555532 33334444443333
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Q 005161 376 MG-----MFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLK---DACAVLETMEKQKDIEPDAYLYCDMLRIYQQC 447 (711)
Q Consensus 376 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (711)
.+ ++++|...|+...+.|. ...+..+...|...+..+ .+.+.+...... .+......+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence 33 55666666666666542 224445555555544322 233333333211 1234455555556665
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc----CcH
Q 005161 448 GMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL---PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKA----KLF 520 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 520 (711)
+.++++......+.+.-...++..+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 544444443333322222223336666666666677 7777777777777766 34444444555555443 577
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 005161 521 KRVRKLFSMAKKLGLVDVISYNTIIAA-Y--GQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEG-----QMENF 592 (711)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 592 (711)
++|...|+... +.++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 77777777766 3455666666666 3 45777778888777777665 4555556666665 44 77788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc----cCChHHHHH
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGI----AGMVEDAVG 664 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 664 (711)
...|++.. . -+...+..|...|.. ..|+++|...|++..+.| ++.....|...|.. ..++++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 88777776 3 355566666666655 337788888888777654 23445566666653 457778888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 665 LVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
.|+...+.|. ++.......+......++..+|..+.++-+
T Consensus 380 ~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 380 FSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8887776542 222222222223334456666666666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-14 Score=133.34 Aligned_cols=245 Identities=9% Similarity=-0.024 Sum_probs=178.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
|..++......+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+....+ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34456667778888899999999999888865 3455677888888888899999999998888733221 3458888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
+.+|...|++++|++.|++.....+. +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 88889999999999999888876544 55778888888888899999998888888763 44667777777333345588
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCcc------HhhHHHHHHHHHcCCCH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN---YREAKWYYKELKHLG-YKPN------ASNLYTLINLHAKYEDE 240 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~ 240 (711)
++|...|+++.+..+ .+...+..+...+...|+ +++|...|+++.+.. ..|+ ..++..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 899988888887543 345667777777777777 777888888776642 1122 14566677777778888
Q ss_pred HHHHHHHHHHHHCCCCChhHHH
Q 005161 241 EGAVNTLDDMLNMGCQHSSILG 262 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~ 262 (711)
++|...++++.+..|.+.....
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHH
Confidence 8888888888777766554433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=163.71 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 119 LENWLVMLNAYSQQGKLEEAELVLVSMRE---AGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
..+|+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35677788888888888888877766653 467778888888888888888888888888888777777888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhcCCCccHhhHHHHHHHH
Q 005161 196 IEGWGRAGN-YREAKWYYKELKHLGYKPNASNLYTLINLH 234 (711)
Q Consensus 196 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (711)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 887777776 367777888888778888877777666433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-14 Score=139.67 Aligned_cols=104 Identities=16% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 005161 125 MLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM---EAAQRLFLSIKDVGLEPDETTYRSMIEGWGR 201 (711)
Q Consensus 125 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 201 (711)
+...+.+.|++++|.+.|++..+.| +...+..|...|...|+. ++|..+|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555566677777777777776654 333444555555556666 6777777666642 44455555553433
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCC
Q 005161 202 AG-----NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYE 238 (711)
Q Consensus 202 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (711)
.+ ++++|...|++..+.|.. ..+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP 120 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC
Confidence 33 556667666666665422 24444444444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-14 Score=132.61 Aligned_cols=240 Identities=11% Similarity=0.009 Sum_probs=149.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP--NLENWLVMLNA 128 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 128 (711)
..+......+...|++++|...|+.+.+.+|....++..++.+|...|++++|++.++++......+ ...++..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455566777788888888888888888887777788888888888888888888888877733211 23346777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
+...|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+..+ .+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888877764 33556777777777777777777777777766432 3444555555233334466667
Q ss_pred HHHHHHHHhcCCCccHhhHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 209 KWYYKELKHLGYKPNASNLYTLINLHAKYED---EEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
...|+++.+... .+...+..+..++...|+ .+.|...++++.+...
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------ 210 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA------------------------------ 210 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG------------------------------
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh------------------------------
Confidence 666666665421 123344444444444444 4444444444443210
Q ss_pred hccCCc----chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCC
Q 005161 286 YQHVLF----NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDT 324 (711)
Q Consensus 286 ~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 324 (711)
..+.+ -..++..+...|...|++++|.+.|++....++
T Consensus 211 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 211 -PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp -GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 00111 124566667777777777777777777666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-13 Score=122.83 Aligned_cols=201 Identities=13% Similarity=-0.022 Sum_probs=107.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
..++..+...+...|++++|.+.|+.+++.. +.+...+..+..++...|++++|...|+++.+..+....++..++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4455555556666666666666666665543 334555555555666666666666666666665555555556666666
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 005161 95 TRL-SLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEA 172 (711)
Q Consensus 95 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (711)
... |++++|...++.+...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 66666666666655521112 23445555555555566666665555555542 2234455555555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
|...|+++.+..+..+...+..+...+...|+.+.|..+++.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555554432212333444444444555555555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-11 Score=125.64 Aligned_cols=456 Identities=11% Similarity=-0.000 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 005161 66 VEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK---LEEAELVL 142 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 142 (711)
..+-...|+.....+|.+..+|..++..+.+.+.++.+..+|+.++..-+. ....|...+..-.+.+. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344566677778888888899999999999999999999999998876543 56678888888888888 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHhhccCCh--------HHHHHHHHHHHh-cCC-CCC-hhhHHHHHHHHH---------h
Q 005161 143 VSMREAG-FSPNIVAYNTLMTGYGKVSNM--------EAAQRLFLSIKD-VGL-EPD-ETTYRSMIEGWG---------R 201 (711)
Q Consensus 143 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~li~~~~---------~ 201 (711)
++.+... .+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988863 137888888877655444443 345577777554 344 443 345666665432 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHH
Q 005161 202 AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRIL 281 (711)
Q Consensus 202 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 281 (711)
+++.+.+..+|+++.......-..+|......-...+ . ..+.+++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~----------------------------------~~a~~~~ 251 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-Q----------------------------------LTARRHI 251 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-T----------------------------------TTHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-c----------------------------------chHHHHH
Confidence 2345566667766664321111122221111100000 0 0011111
Q ss_pred HHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh------hcCC-----------Ccc--------HhhHHHHHH
Q 005161 282 KGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR------WKDT-----------VFE--------DNLYHLLIC 336 (711)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~-----------~~~--------~~~~~~l~~ 336 (711)
.+. ...++.|...+.++. .+.. .|. ...|...+.
T Consensus 252 ~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 252 GEL---------------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred HHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 100 001111111111100 0000 000 011111111
Q ss_pred HHHccC-------ChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 337 SCKDSG-------HLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAE-KLYLNLKSSGIRLDLIAFTVVVRMY 408 (711)
Q Consensus 337 ~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (711)
.-...+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|. .+|+..... ++.+...|..++...
T Consensus 311 fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 WESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQY 388 (679)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 111110 011222334333332 1223344444444444444444443 444444432 222333344444444
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCC------------
Q 005161 409 VKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG---------ITW------------ 467 (711)
Q Consensus 409 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------ 467 (711)
.+.|+++.|.++ |+.++... ..|
T Consensus 389 e~~~~~e~aR~i------------------------------------yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 389 ELNTKIPEIETT------------------------------------ILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHTTCHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHH------------------------------------HHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 444444444444 44443320 001
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 468 NQELYDCVINCCARALPIDELSRVFDEMLQH-GFTPNIITLNVMLDIYGKA-KLFKRVRKLFSMAKKLGLVDVISYNTII 545 (711)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 545 (711)
...+|...+....+.++.+.|..+|..+.+. + ......|...+..-.+. ++.+.|..+|+...+..+.++..|...+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 1235666666666677777777777777664 2 11222222222222233 4477888888877777666666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 546 AAYGQNKNLESMSSTVQEMQFDGFS--VSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
......|+.+.|..+|++......+ .....|...+..-.+.|+.+.+..+.+++.+. .|+......+++-|.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 7777777888888888877765321 13456777777777778888888888888775 344444445555553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-13 Score=125.52 Aligned_cols=199 Identities=13% Similarity=0.010 Sum_probs=95.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|.+.|+++.+.++....++..++..|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 344444445555555555555555555443 2334444445555555555555555555555555444445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
..|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544411112 23344444445555555555555555554432 223444444445555555555555
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 175 RLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
..|+++.+... .+...+..+...+...|++++|...++++.+
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555444321 2333344444444445555555555554444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-12 Score=121.90 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKK----SWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
.++..+-..+...|++++|.+.|+...+. .+...+..+..+|.. .+++++|...|++..+.+ ...++..+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 33444444445555555555555555442 233344444444444 555555555555554443 234444445
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 92 TIYTR----LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 92 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
..|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55544 455555555555444432 33444444444444 445555555554444432 33344444444
Q ss_pred hhc----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 005161 164 YGK----VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR----AGNYREAKWYYKELKH 217 (711)
Q Consensus 164 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 217 (711)
|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 443 444444444444444421 23333444444444 4444444444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-14 Score=131.44 Aligned_cols=243 Identities=12% Similarity=-0.066 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHH
Q 005161 448 GMLDKLSYLYYKILKSGI---TWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVR 524 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 524 (711)
|++++|+..++++.+... +.+..++..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666655421 1134556667777777788888888888777653 445777788888888888899999
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 525 KLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSC 604 (711)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (711)
..++.+.+..+.+..++..++..|...|++++|...++++.+. .|+.......+..+...|++++|...+++.... .
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C
Confidence 9988888888878888888999999999999999999988875 344444444555567779999999999888765 2
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-----hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 005161 605 TFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-----LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
+++...+. ++..+...++.++|...++++.+. .|+ ..++..++.+|...|++++|...++++.+ ..|+..
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 249 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF 249 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH
Confidence 44444443 666777888889999999888653 232 57788899999999999999999999987 567432
Q ss_pred hHHHHHHHHHhcchHHHHHHHH
Q 005161 680 TYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
.....++...|++++|++.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 23356788889999998876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-14 Score=132.88 Aligned_cols=226 Identities=11% Similarity=-0.061 Sum_probs=171.2
Q ss_pred HHhcCChHHHHHHHHHHhHcCC---CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 25 CNKRGCVELGAKWFHMMLECDV---QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
+...|++++|...|+.+++... +.+...+..+..++...|++++|...|+++.+.+|....+|..++.+|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456888999999999988632 2246677788888999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
+|...|+++....+. +..++..+...+.+.|++++|...++++.+.. |+.......+..+...|++++|...|++..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998886544 56788888899999999999999999998864 343344444455566789999999997776
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 182 DVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP---NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
.... ++...+ .++..+...++.++|...+++........ +..++..+...+...|++++|...++++....|
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 6532 343444 36677777888888888888876542211 145666677777777777777777777776554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-13 Score=125.40 Aligned_cols=206 Identities=17% Similarity=0.093 Sum_probs=165.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|++++|...|+++.+.++....++..++.+|...|++++|.+.++++....+. +...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 4566777888888999999999999998888877888888999999999999999999988776544 667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 130 SQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999888732233 566777888888888999999999988877543 3567788888888888999999
Q ss_pred HHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 209 KWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
...++++.+.. +.+...+..+...+...|+.++|...++++.+..+...
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 98888887753 23566677777888888888888888888887766554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-13 Score=122.14 Aligned_cols=213 Identities=13% Similarity=0.013 Sum_probs=183.9
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
+.+...+..+...+...|++++|...|+.+.+..+....++..++.+|...|++++|.+.++++....+. +..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 3456778888999999999999999999999999988899999999999999999999999999886644 677888999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 005161 127 NAYSQQ-GKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN 204 (711)
Q Consensus 127 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 204 (711)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...|+++.+..+ .+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 99999999999999832223 467888899999999999999999999988653 457788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHH
Q 005161 205 YREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL 261 (711)
Q Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 261 (711)
+++|...++++.+.....+...+..+...+...|+.+.+...++.+.+..|......
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999998864324666777888888999999999999999998877766443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-14 Score=130.05 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..|..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+.++....++..++.++.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 334444444444455555555554444432 2334444444444444455555555555444444444444444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
..|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444443322 33344444444444444444444444444432 1233344444444444444444444
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 176 LFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
.|+++.+... .+..++..+...+...|++++|...|+++.+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 4444433221 2233334444444444444444444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-12 Score=121.30 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=200.9
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR----LSLYEKAEEVIRLIREDKVVPNLENWL 123 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (711)
.+...+..+...+...|++++|...|++..+ +.+..++..+...|.. .+++++|+..|++..+.+ +..++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3567788888899999999999999999998 4456789999999999 999999999999998875 677888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 124 VMLNAYSQ----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK----VSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 124 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999999 999999999999999874 78889999999998 999999999999999864 56778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCChhHHHHHHHH
Q 005161 196 IEGWGR----AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAK----YEDEEGAVNTLDDMLNMGCQHSSILGTLLQA 267 (711)
Q Consensus 196 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 267 (711)
...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.++ ...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHH
Confidence 888888 899999999999998874 56778888889988 9999999999999999865 6778889999
Q ss_pred HHh----cCCCCcHHHHHHHhhhccCC
Q 005161 268 YEK----AGRTDNVPRILKGSLYQHVL 290 (711)
Q Consensus 268 ~~~----~~~~~~a~~~~~~~~~~~~~ 290 (711)
+.. .+++++|...++.+...++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 999 99999999999999988655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-14 Score=128.43 Aligned_cols=218 Identities=17% Similarity=0.063 Sum_probs=172.5
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
......|..+...+...|++++|...|+++.+.++....++..++.++...|++++|+..++++....+. +..++..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 3556677788888999999999999999999999988899999999999999999999999999887644 678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 005161 127 NAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYR 206 (711)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 206 (711)
..+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999875 45788899999999999999999999999987653 46778899999999999999
Q ss_pred HHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHH
Q 005161 207 EAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAY 268 (711)
Q Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (711)
+|...|+++.+.. +.+..++..+..++...|++++|...++++.+..+.....+..+....
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 9999999998874 335778889999999999999999999999999888876665554443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-14 Score=138.94 Aligned_cols=279 Identities=12% Similarity=0.021 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCChhh
Q 005161 399 IAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD--AYLYCDMLRIYQQCGMLDKLSYLYYKILKSG-----ITWNQEL 471 (711)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 471 (711)
..+..+...+...|++++|+..|+.........+. ...+..+...+...|++++|...+++..... ......+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445566677778888888888777654321111 1356666677777777777777776665431 1112234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCccHHHHHHHHHHHhccCc-----------------HHHHHHHHHH
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQH----G-FTPNIITLNVMLDIYGKAKL-----------------FKRVRKLFSM 529 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 529 (711)
+..+...+...|++++|...+++..+. + .+.....+..+...|...|+ +++|.+.+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 455555566666666666666655432 1 01122334444445555555 4444444443
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSC-TFD- 607 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~- 607 (711)
..+... .. ...+.....+..+...+...|++++|...+++..+... .++
T Consensus 209 al~~~~---------------------------~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 209 NLKLMR---------------------------DL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHH---------------------------HH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHH---------------------------Hc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 322110 00 00011223445555556666666666666665543200 011
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC----CCC-ChHhHHHHHHHHhccCChHHHHHHHHHHHHc----CCC
Q 005161 608 ---HYTYNIMIDIYGEQGWINEVVGVLTELKECG----LRP-DLCSYNTLIKAYGIAGMVEDAVGLVKEMREN----GIE 675 (711)
Q Consensus 608 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 675 (711)
...+..+...|...|++++|...+++..+.. ..+ ...++..+..+|...|++++|...+++..+. +..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 1245556666666666666666666665410 000 1345566666666777777777766666541 111
Q ss_pred C-CcchHHHHHHHHHhcchHHHHHHHHHHHHH
Q 005161 676 P-DKITYTNMITALQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 676 p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 706 (711)
+ ...++..+..+|...|++++|.+++++..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 123556666666677777777776666544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-12 Score=121.67 Aligned_cols=238 Identities=8% Similarity=0.003 Sum_probs=151.4
Q ss_pred hHhHHHHHHHHHhc----CCh----HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHc-------cCCH-------HHHHHH
Q 005161 15 FQLFNTLIYACNKR----GCV----ELGAKWFHMMLECDVQPNVATFGMLMGLYKK-------SWNV-------EEAEFA 72 (711)
Q Consensus 15 ~~~~~~~l~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~ 72 (711)
...|...+.-..+. ++. ..|...|+.+++.. +.+...|..+...+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44555555544333 232 56677777777753 5566677766666542 4664 777777
Q ss_pred HHHHHH-cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 73 FNQMRK-LGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE-NWLVMLNAYSQQGKLEEAELVLVSMREAGF 150 (711)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 150 (711)
|++..+ .+|.....|..++..+.+.|++++|.++|++++...+. +.. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 777777 46666677777777777777777777777777764432 233 67777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHhh-ccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCc--cHhh
Q 005161 151 SPNIVAYNTLMTGYG-KVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG-YKP--NASN 226 (711)
Q Consensus 151 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~ 226 (711)
+++...|...+.... ..|++++|..+|++..+..+ .+...|..++..+.+.|++++|..+|++..... ..| ....
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 234444443333221 25777777777777665432 355666777777777777777777777777652 233 2445
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 227 LYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
|..++......|+.+.|..+++++.+..|.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 666666666677777777777777665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-13 Score=131.80 Aligned_cols=301 Identities=10% Similarity=-0.018 Sum_probs=168.5
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCC-c
Q 005161 362 NLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD----LIAFTVVVRMYVKAGSLKDACAVLETMEKQK---DIEP-D 433 (711)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~-~ 433 (711)
....+......+...|++++|...|+.+.+.... + ..++..+...+...|++++|...++...... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555556666666777777666666654321 2 2345556666666666666666666543221 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CccHHHHHHHHH
Q 005161 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF-TPNIITLNVMLD 512 (711)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 512 (711)
..++..+...+...|++++|...+++..+.... .+. ......+..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-------------------------------LNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------------------HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------------------------cccccchHHHHHHHHH
Confidence 233444444555555555555554444322100 000 001224444455
Q ss_pred HHhccCc--------------------HHHHHHHHHHHHHcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 513 IYGKAKL--------------------FKRVRKLFSMAKKLGL------VDVISYNTIIAAYGQNKNLESMSSTVQEMQF 566 (711)
Q Consensus 513 ~~~~~~~--------------------~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 566 (711)
.|...|+ +++|...+........ ....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 5666655554433211 1234566666677777777777777766654
Q ss_pred CCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 567 DGF-----SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 567 ~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
... ......+..+...+...|++++|...+++..+. +..+. ..++..+...|...|++++|...+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 310 011235666777777888888888888776642 10111 34667777888888888888888887765
Q ss_pred C----CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhcchH
Q 005161 637 C----GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMREN----GIEPD-KITYTNMITALQRNDKF 694 (711)
Q Consensus 637 ~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~ 694 (711)
. +-.+. ..++..+..+|...|++++|...+++..+. +..+. ..++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 11111 456777788888888888888888887641 21221 35566677777766654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=135.37 Aligned_cols=240 Identities=17% Similarity=0.087 Sum_probs=163.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------C
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLG------L 81 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~ 81 (711)
......+......+...|++++|...|+.+++.+ +.+ ...+..+..++...|++++|...|+++.... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566667778889999999999999998874 223 3567778888888999999999988875431 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCC--------------------HH
Q 005161 82 VCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-P----NLENWLVMLNAYSQQGK--------------------LE 136 (711)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~ 136 (711)
....++..+...|...|++++|...+++....... + ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12457788888999999999999888877653211 1 13467777788888888 88
Q ss_pred HHHHHHHHHHHc----C-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCCHH
Q 005161 137 EAELVLVSMREA----G-FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL-EPD----ETTYRSMIEGWGRAGNYR 206 (711)
Q Consensus 137 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 206 (711)
+|...+++..+. + .+....++..+...+...|++++|...|++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776542 1 011234567777778888888888888877654311 011 225677777788888888
Q ss_pred HHHHHHHHHHhcCC----Ccc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005161 207 EAKWYYKELKHLGY----KPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 207 ~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
+|...+++..+... .+. ..++..+...+...|++++|...+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 88888877764311 111 34556666677777777777777766654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=138.68 Aligned_cols=97 Identities=15% Similarity=-0.008 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC------hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCC-----cchhH
Q 005161 227 LYTLINLHAKYEDEEGAVNTLDDMLNMGCQH------SSILGTLLQAYEKAGRTDNVPRILKGSLYQHVL-----FNLTS 295 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 295 (711)
+..+...+...|++++|...+++.....+.. ...+..++..+...|++++|...+++++..... ....+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 3444444444444444444444444322211 133444555555555555555555544432111 12346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcC
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 323 (711)
+..+...|...|++++|...+++.....
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 6777888888888888888887766543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=112.41 Aligned_cols=168 Identities=14% Similarity=0.063 Sum_probs=119.0
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+..+|..+..+|.+.|++++|+..|+++.+.+|....++..++.+|.+.|++++|...++......+. +...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 355667777777777777777777777777777777777777777777777777777777777665544 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
.+...++++.|...+.+..+.. +.+...+..+..++.+.|++++|.+.|++..+..+ .+..+|..+...+.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777653 34566677777777777777777777777766543 355667777777777777777
Q ss_pred HHHHHHHHHhc
Q 005161 208 AKWYYKELKHL 218 (711)
Q Consensus 208 A~~~~~~~~~~ 218 (711)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=130.58 Aligned_cols=276 Identities=10% Similarity=-0.025 Sum_probs=161.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD--AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINC 478 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 478 (711)
+......+...|++++|...|+.........+. ...+..+...+...|++++|...+++......
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------- 74 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------------- 74 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------------
Confidence 344455566666666666666666544211111 23455555555566666666655555432200
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--C----chhHHHHHHHHHHhc
Q 005161 479 CARALPIDELSRVFDEMLQHGFT-PNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--V----DVISYNTIIAAYGQN 551 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~ 551 (711)
..+.. .....+..+...+...|++++|...+.+..+..+ + ...++..+...+...
T Consensus 75 ------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 75 ------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp ------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 00001 1122333444444455555555555544333221 1 122444555555555
Q ss_pred CC--------------------HHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 005161 552 KN--------------------LESMSSTVQEMQFD----G-FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET---- 602 (711)
Q Consensus 552 ~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 602 (711)
|+ +++|...+++.... + .+.....+..+...+...|++++|...+++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 55555555554322 1 1112345667777788888888888888877642
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHc----
Q 005161 603 SCTF-DHYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMREN---- 672 (711)
Q Consensus 603 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 672 (711)
+..+ ....+..+...+...|++++|...+++..+. +..+. ..++..+..+|...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1011 1236777888888999999999999888752 11111 456788888999999999999999988752
Q ss_pred CCCC-CcchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 673 GIEP-DKITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 673 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+-.+ ...++..+..++.+.|++++|.+++++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 1346778899999999999999999988654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=112.29 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=153.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+..+|..+-..|.+.|++++|.+.|+++++.. +.+...+..+..+|.+.|++++|...+..+....+....++..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999986 56788899999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
+...++++.|...+.+.....+. +..++..+...+.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998887655 67888899999999999999999999999875 45788999999999999999999
Q ss_pred HHHHHHHHhc
Q 005161 174 QRLFLSIKDV 183 (711)
Q Consensus 174 ~~~~~~~~~~ 183 (711)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-12 Score=118.26 Aligned_cols=216 Identities=9% Similarity=0.034 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 005161 67 EEAEFAFNQMRKLGLVCESAYSAMITIYTR-------LSLY-------EKAEEVIRLIRE-DKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 67 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 131 (711)
+.|..+|+++...+|.+...|..++..+.. .|++ ++|..+|++... ..+. +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHh
Confidence 688899999999999888999998888764 4775 788888888877 3433 55677788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHHHH
Q 005161 132 QGKLEEAELVLVSMREAGFSPNIV-AYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWG-RAGNYREAK 209 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 209 (711)
.|++++|..+|+++++..+ .+.. +|..++..+.+.|++++|..+|++..+..+ ++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887532 1333 777788777788888888888888876543 23334433322211 257777777
Q ss_pred HHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C---ChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 210 WYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC-Q---HSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
.+|++..+.. +.+...+..++..+...|+.++|..+|++++.... + ...++..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776652 22455666666677777777777777777766421 1 11334444444444444444444444443
Q ss_pred h
Q 005161 286 Y 286 (711)
Q Consensus 286 ~ 286 (711)
.
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=132.04 Aligned_cols=212 Identities=8% Similarity=0.012 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcH-HHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 485 IDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLF-KRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQE 563 (711)
Q Consensus 485 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 563 (711)
+++++..++...... +.+...+..+...+...|++ ++|.+.|+++.+..+.+..+|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666676665542 44677888888889999999 9999999999998888889999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc--------CCHHH
Q 005161 564 MQFDGFSVSLEAYNSMLDAYGKE---------GQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ--------GWINE 626 (711)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 626 (711)
..+.. |+...+..+...+... |++++|...++++.+.. +.+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98864 6678888888899998 99999999999998863 45677888999999888 89999
Q ss_pred HHHHHHHHHHCCCCC----ChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHHHHHHH
Q 005161 627 VVGVLTELKECGLRP----DLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 627 A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
|...|++..+. .| +...|..+..+|...|++++|+..|+++.+ +.|+. ..+..+..++...|++++|.+.+
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999984 56 578899999999999999999999999988 66754 67888889999999999998766
Q ss_pred HHH
Q 005161 702 LWM 704 (711)
Q Consensus 702 ~~m 704 (711)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-13 Score=128.68 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCchhHH
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLG------LVCESAY 87 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~ 87 (711)
+......+...|++++|...|+.+++.. +.+ ...+..+..++...|++++|...++++.+.. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344455667777777777777777653 222 2455566666667777777777776654431 1113456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVV-PN----LENWLVMLNAYSQQGK 134 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~ 134 (711)
..+...|...|++++|...+++....... ++ ..++..+...+...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 66666666667777776666665432100 11 2244555555555555
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=122.38 Aligned_cols=229 Identities=8% Similarity=-0.080 Sum_probs=122.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----C--CCccHHHHH
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSG----ITW-NQELYDCVINCCARALPIDELSRVFDEMLQH----G--FTPNIITLN 508 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~ 508 (711)
....+...|++++|...+++..+.- -.+ ...++..+...+...|+++.|+..+++..+. + .+....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3444556666666666666665431 111 2234555666666666666666666665531 1 011233455
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCC--C----chhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 005161 509 VMLDIYGKAKLFKRVRKLFSMAKKLGL--V----DVISYNTIIAAYGQNKNLESMSSTVQEMQFD----GF-SVSLEAYN 577 (711)
Q Consensus 509 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 577 (711)
.+..+|...|++++|...+..+.+..+ + ...++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 556666666777777766665554322 1 1235556666666666666666666665541 11 33344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC-hHhHHHH
Q 005161 578 SMLDAYGKEGQMENFKNVLRRMKET----SCTFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD-LCSYNTL 649 (711)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 649 (711)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 6666666666666666666665431 111111223445555666666 45555555443 22232 3445556
Q ss_pred HHHHhccCChHHHHHHHHHHHH
Q 005161 650 IKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 650 ~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-12 Score=124.00 Aligned_cols=229 Identities=10% Similarity=-0.048 Sum_probs=177.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-------CchhHHH
Q 005161 475 VINCCARALPIDELSRVFDEMLQH----GFTP-NIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-------VDVISYN 542 (711)
Q Consensus 475 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~ 542 (711)
....+...|++++|+..+++..+. +-++ ....+..+...|...|++++|...+.++.+... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999999863 2122 346778888999999999999999998776533 1345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGF-----SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SC-TFDHYTYN 612 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 612 (711)
.+...|...|++++|...+++..+... +....++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998875411 111247888999999999999999999998862 23 33455788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCC---CCCC-hHhHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCC-cchHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECG---LRPD-LCSYNTLIKAYGIAGM---VEDAVGLVKEMRENGIEPD-KITYTNM 684 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 684 (711)
.+...|...|++++|...+++..+.. -.|. ...+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999987621 0122 3346778889999999 67777766665 34443 3577889
Q ss_pred HHHHHhcchHHHHHHHHHHHHH
Q 005161 685 ITALQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 685 ~~~~~~~~~~~~A~~~~~~m~~ 706 (711)
...|...|++++|.+++++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=131.03 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY-EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLV 143 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 143 (711)
.++.+...++......+.....+..+..+|...|++ ++|++.|++.++.++. +..+|..+...|.+.|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356666677766666666677777888888888888 8888888877776544 56677777778888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhcc---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CCHH
Q 005161 144 SMREAGFSPNIVAYNTLMTGYGKV---------SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA--------GNYR 206 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 206 (711)
+..+.. |+...+..+..++... |++++|...|++..+..+ .+...|..+...+... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 877763 5567777777777777 778888888877776543 3566677777777776 7777
Q ss_pred HHHHHHHHHHhcCCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 005161 207 EAKWYYKELKHLGYK--PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPR 279 (711)
Q Consensus 207 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 279 (711)
+|+..|++..+.... .+...+..+..++...|++++|...++++.+..|.....+..+...+...|++++|..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777765221 2556666677777777777777777777776665544444444444444444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=125.15 Aligned_cols=243 Identities=14% Similarity=0.069 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKL--------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED------K-V 115 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 115 (711)
.++..+...+...|++++|...|+++.+. .+....++..+...|...|++++|...++++... + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555555542 2222345555555666666666666555554432 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc-----
Q 005161 116 VPNLENWLVMLNAYSQQGKLEEAELVLVSMREA------GF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV----- 183 (711)
Q Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 183 (711)
.....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...|++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555556666666666666666665543 11 123345566666666777777777777666543
Q ss_pred -CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 184 -GLEP-DETTYRSMIEGWGRAGNYREAKWYYKELKHLG-------YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 184 -~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
+..| ...++..+...+...|++++|...|+++.+.. ..+.........
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~----------------------- 244 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA----------------------- 244 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH-----------------------
Confidence 1111 23456666777777777777777777766531 111111111111
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 005161 255 CQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRW 321 (711)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 321 (711)
..+......+...+.+.++...++.....++. +..++..+...|.+.|++++|.+.|++...
T Consensus 245 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 ----EEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11222233344556666676666666654433 567788888888888888888888877654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=122.14 Aligned_cols=253 Identities=13% Similarity=0.098 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIRED-------KVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA------G- 149 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 149 (711)
..++..++..+...|++++|...++++... +......++..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 567889999999999999999999998763 22224567888889999999999999999988764 1
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 005161 150 FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV------GL-EPDETTYRSMIEGWGRAGNYREAKWYYKELKHL---- 218 (711)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 218 (711)
.+....++..+...+...|++++|...|++..+. +. ......+..+...+...|++++|...|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1234567888888999999999999999887753 11 123455778888888999999999999988764
Q ss_pred --CCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 219 --GYKP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 219 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
+..| ...++..+..++...|++++|...++++.+..+... .+..+.... ........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~--------~~~~~~~~ 246 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE------------FGSVDDENK--------PIWMHAEE 246 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH------------HC------C--------CHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------------CCCCCcchH--------HHHHHHHH
Confidence 2122 244677778888888888888888888775321100 000000000 00002233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhc
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHIC 357 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 357 (711)
+..+...+...+.+.++...+.......+ ....++..+...+...|++++|...+++..+.
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445555666777777777776655432 24567888999999999999999999988653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-10 Score=114.67 Aligned_cols=227 Identities=8% Similarity=-0.055 Sum_probs=139.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCC----C-CccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--C-----chhHHHHH
Q 005161 477 NCCARALPIDELSRVFDEMLQHG----F-TPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--V-----DVISYNTI 544 (711)
Q Consensus 477 ~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~l 544 (711)
..+...|++++|+..|++..+.. - +.....+..+...|...|+++.|...+.++....+ + ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34455666777777666665421 0 11234455566666777777777777766554321 1 23456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 005161 545 IAAYGQNKNLESMSSTVQEMQFD----GFS-VSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SCTFDHYTYNIMI 615 (711)
Q Consensus 545 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 615 (711)
...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 77777777777777777666543 111 12345666777777888888888888777651 2222355677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCC---CCC-hHhHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCC-cchHHHHHHH
Q 005161 616 DIYGEQGWINEVVGVLTELKECGL---RPD-LCSYNTLIKAYGIAGM---VEDAVGLVKEMRENGIEPD-KITYTNMITA 687 (711)
Q Consensus 616 ~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 687 (711)
..+.+.|++++|...+++..+..- .|. ...+..+...|...|+ +.+|+..+++ .+..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 788888888888888888776211 122 3345566666777777 5666666555 223333 2456677788
Q ss_pred HHhcchHHHHHHHHHHHHH
Q 005161 688 LQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 688 ~~~~~~~~~A~~~~~~m~~ 706 (711)
|...|++++|.+++++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888888877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-10 Score=110.19 Aligned_cols=163 Identities=7% Similarity=-0.037 Sum_probs=96.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhccCcHHHHHHHHHHHHH-----cCCCchhH
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQH----GFT-PNIITLNVMLDIYGKAKLFKRVRKLFSMAKK-----LGLVDVIS 540 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 540 (711)
++..+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++... ..+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3445555555555666555555555431 111 1233455566666677777777777766665 44444566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHH
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFDG----FSVSLEAYNSMLDAYGKEGQ---MENFKNVLRRMKETSCTFD-HYTYN 612 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~ 612 (711)
+..+...|.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|...+++.. ..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHH
Confidence 6777777777777777777777766542 11122344555555666666 666666665522 2222 33556
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788888888888888887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=6.7e-11 Score=103.15 Aligned_cols=165 Identities=13% Similarity=0.066 Sum_probs=108.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...++.+.+..+....++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3445556666777777777777777776653 345666666677777777777777777777776666666677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777766655433 45556666666666777777777776666653 334556666666666666666666
Q ss_pred HHHHHHHh
Q 005161 175 RLFLSIKD 182 (711)
Q Consensus 175 ~~~~~~~~ 182 (711)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=113.06 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=154.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHh----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hhHHHH
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVA----TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ESAYSA 89 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 89 (711)
.....+...|++++|...++..++.....+.. .+..+..++...|++++|...+++.....+.. ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445668899999999999988764222222 34556677788899999999998877643221 234667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHH
Q 005161 90 MITIYTRLSLYEKAEEVIRLIRED----KVV--P-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP----NIVAYN 158 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 158 (711)
+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 888889999999999988887652 111 2 23455667778888899999999888877643211 234567
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HhhHHH
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE-TTYR-----SMIEGWGRAGNYREAKWYYKELKHLGYKPN---ASNLYT 229 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 229 (711)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7777888888899888888887643211111 1121 223346678888888888887765432111 223455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
+...+...|++++|...++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66677777777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-11 Score=125.47 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=128.1
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
..+|+.+-..|.+.|++++|++.|+++++.. +-+...+..+..+|.+.|++++|+..|+++.+.+|....+|..+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5677777778888888888888888888764 445677777888888888888888888888888887778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
...|++++|++.|++.++.++. +..++..+...|...|++++|...|++.++.. +.+...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 8888888888888887776544 56777788888888888888888888887764 336677777888888888888887
Q ss_pred HHHHHHHh
Q 005161 175 RLFLSIKD 182 (711)
Q Consensus 175 ~~~~~~~~ 182 (711)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-11 Score=125.26 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=148.0
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+...++.|..+|.+.|++++|++.|+++.+.+|....+|+.+..+|.+.|++++|++.|++.++.++. +..+|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 346788889999999999999999999999999998999999999999999999999999999887655 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+|.+.|++++|.+.|++.++.. +.+...|+.+..+|.+.|++++|...|++..+..+ -+...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999875 34778899999999999999999999999888653 356778889999999999999
Q ss_pred HHHHHHHHHhc
Q 005161 208 AKWYYKELKHL 218 (711)
Q Consensus 208 A~~~~~~~~~~ 218 (711)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-10 Score=108.42 Aligned_cols=300 Identities=10% Similarity=-0.033 Sum_probs=203.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----hhh
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDA----YLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT-WN----QEL 471 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 471 (711)
.......+...|++++|...++......+. .+. ..+..+...+...|++++|...+++....... .+ ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344455667789999999999987665421 222 24566677888899999999999887653211 11 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----CCC--c-cHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-----chh
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQH----GFT--P-NIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-----DVI 539 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 539 (711)
+..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+.......+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 556677788899999999999988752 222 2 2345566778888999999999999988765542 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 005161 540 SYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSL-EAYN-----SMLDAYGKEGQMENFKNVLRRMKETSCTF---DHYT 610 (711)
Q Consensus 540 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 610 (711)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6777888889999999999999988654212111 1222 23344678899999999998887532111 1224
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCCh-HhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKEC----GLRPDL-CSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMI 685 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 685 (711)
+..+...+...|++++|...+++..+. |..++. .++..+..++...|++++|...+++.... .+.. ..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~~~~----g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL--ANRT----GFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHH----CCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--hccc----cHH
Confidence 567778888899999999999888652 222222 36667788888999999999999998862 2211 122
Q ss_pred HHHHhcchHHHHHHHHHHHHHhCc
Q 005161 686 TALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 686 ~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
..+...| +....+++.+.+.+.
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHcc--HHHHHHHHHHHhCCC
Confidence 3455555 566677777665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=104.26 Aligned_cols=196 Identities=13% Similarity=0.012 Sum_probs=158.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
|...+......+...|++++|...|+.+++...+++...+..+..++...|++++|...|+++.+.+|....+|..+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45788888899999999999999999999987547888888899999999999999999999999999988999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHh
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNL-------ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP--NIVAYNTLMTGY 164 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 164 (711)
|...|++++|+..+++.....+. +. ..|..+...+...|++++|.+.+++.++.. +. +...+..+..++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence 99999999999999999886644 44 457788888999999999999999999863 22 356777788777
Q ss_pred hccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 165 GKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
... +...++++...+. .+...|.... ....+.+++|+..|++..+..
T Consensus 164 ~~~-----~~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 164 YNN-----GADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 544 3455566655432 3344444433 334577999999999999863
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=101.56 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..+..+...+...|++++|...|+.+.+..+....++..++..+...|++++|...++.+....+. +..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 344455566666777777777777766666655666666777777777777777777766654432 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005161 131 QQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKW 210 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 210 (711)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777776666653 33555666666666666666666666666655432 344556666666666666666666
Q ss_pred HHHHHHhc
Q 005161 211 YYKELKHL 218 (711)
Q Consensus 211 ~~~~~~~~ 218 (711)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-10 Score=102.35 Aligned_cols=199 Identities=15% Similarity=0.066 Sum_probs=145.7
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 467 WNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIA 546 (711)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 546 (711)
.++..+......+...|++++|+..|++.++...+++...+..+..++...|++++|...++...+..+.+..++..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35577777888888889999999999988876533666677678888888899999999999888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 005161 547 AYGQNKNLESMSSTVQEMQFDGFSVSL-------EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFD---HYTYNIMID 616 (711)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 616 (711)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++++.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 8999999999999988888763 3344 45777777888888888888888888874 454 456667777
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 617 IYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
.|... +...++++...+ ..+...|.... ....+.+++|+..+++..+ +.|+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 66544 334455555432 22333443332 3345667889999998887 67765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-11 Score=110.19 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=163.0
Q ss_pred HHccCCHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--------CCchhHHHH
Q 005161 479 CARALPIDELSRVFDEMLQH-------GFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLG--------LVDVISYNT 543 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~ 543 (711)
....|++++|+..+++.++. ..+.....+..+...|...|++++|...++.+.... +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45678999999999988752 223346677888899999999999999999887652 235678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHH
Q 005161 544 IIAAYGQNKNLESMSSTVQEMQFDG-------FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET------SCTF-DHY 609 (711)
Q Consensus 544 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~ 609 (711)
+...|...|++++|...+.+..+.. .+.....+..+...|...|++++|...++++.+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987651 1334667888889999999999999999998763 1122 345
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHC-------CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHH---H-cC-CCC
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKEC-------GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMR---E-NG-IEP 676 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~-~~p 676 (711)
++..+...|...|++++|...++++.+. ...+. ...|..+...+...+....+..+ ..+. + .+ ..|
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCH
Confidence 7888889999999999999999998862 12333 33444444444444443333322 2221 1 11 122
Q ss_pred C-cchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 677 D-KITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 677 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+ ..++..+..+|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 367888999999999999999999988653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-10 Score=104.37 Aligned_cols=160 Identities=7% Similarity=-0.117 Sum_probs=90.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCC----Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C--CHHHHHHHH
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGL----VC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV---P--NLENWLVML 126 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~ 126 (711)
.+|...|++++|...|.+..+..+ .. ..+|+.+..+|...|++++|+..+++....... + ...++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777777777776654321 11 346667777777777777777777665542110 0 123455666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChh------hHHH
Q 005161 127 NAYSQQ-GKLEEAELVLVSMREAGFSP-N----IVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDET------TYRS 194 (711)
Q Consensus 127 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 194 (711)
..|... |++++|...+++..+..... + ..+++.+...+.+.|++++|...|++..+..+..... .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 66666666666665531100 1 2345566666666666666666666666543222111 3455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 005161 195 MIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 195 li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
+..++...|++++|...|++..+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-10 Score=107.16 Aligned_cols=227 Identities=18% Similarity=0.102 Sum_probs=159.5
Q ss_pred HhcCChHHHHHHHHHHhHc-------CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCchhHHHHH
Q 005161 26 NKRGCVELGAKWFHMMLEC-------DVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLG--------LVCESAYSAM 90 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l 90 (711)
...|+++.|...|+++++. ..+....++..+..+|...|++++|...|+++.+.. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877762 223346677888899999999999999999988652 2235688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHH
Q 005161 91 ITIYTRLSLYEKAEEVIRLIRED------KV-VPNLENWLVMLNAYSQQGKLEEAELVLVSMREA------G-FSPNIVA 156 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 156 (711)
..+|...|++++|.+.+++.... .. .....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 123567888899999999999999999998875 1 1224567
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhc-------CCCCCh-hhHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCc
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDV-------GLEPDE-TTYRSMIEGWGRAGNY------REAKWYYKELKHLGYKP 222 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~ 222 (711)
+..+..++...|++++|...|++..+. ...+.. ..|..+.......+.. ..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 112222 2333333333332222 222222222211 1122
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 005161 223 NASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253 (711)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (711)
...++..+..++...|++++|...+++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888899999999999999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-10 Score=97.40 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHH----------------HHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGM----------------LMGLYKKSWNVEEAEFAFNQMRKLGLVC 83 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 83 (711)
.....+.+.|++++|...|+.+++.. +.+...|.. +..+|.+.|++++|...|+++.+.+|.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 34445556666666666666666643 222333333 4444555555555555555555555554
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..++..+..+|...|++++|+..|++++..++. +..++..+...|.
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 555555555555555555555555555444332 3344444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=96.81 Aligned_cols=170 Identities=11% Similarity=0.000 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA----------------MITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
..+......+...|++++|...|+.+.+.+|.+..+|.. +..+|.+.|++++|+..|++.++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 334445566778999999999999999999887788888 8888888899999998888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC--hHHHHHHHHHHHhcCCCCChhhH
Q 005161 115 VVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN--MEAAQRLFLSIKDVGLEPDETTY 192 (711)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 192 (711)
+. +..++..+...+...|++++|...|++.++.. +.+..++..+..+|...|+ ...+...++.... +.|....+
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 55 67788888888888889999988888888875 3467778888777755543 3445555555543 22333334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN 226 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 226 (711)
.....++...|++++|...|++..+. .|+...
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 44555666778888888888888774 455443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=100.52 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=73.5
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN---VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAY 87 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 87 (711)
+...+......+.+.|++++|...|+.+++.. +.+ ...+..+..+|.+.|++++|...|+++.+..|.+ ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566666677778888888888888887764 222 4566677777888888888888888888776643 4567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCC
Q 005161 88 SAMITIYTR--------LSLYEKAEEVIRLIREDKV 115 (711)
Q Consensus 88 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~ 115 (711)
..+..++.. .|++++|+..|+++....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 777777777 7888888888888776543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-08 Score=91.05 Aligned_cols=233 Identities=8% Similarity=-0.064 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCchhHHHHHHHHH--
Q 005161 20 TLIYACNKRGCV-ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW--NVEEAEFAFNQMRKLGLVCESAYSAMITIY-- 94 (711)
Q Consensus 20 ~~l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-- 94 (711)
..+++..+.|.. ++|+.+++.+++.+ +-+...|+..-.++...| +++++++.++.+...+|.+..+|+.-..++
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 334444455555 68999999999876 556778888888888888 999999999999999999888888777666
Q ss_pred --Hhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 95 --TRL---SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE--EAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 95 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
... +++++++.+++.+...+++ +..+|....-.+.+.|.++ ++.+.++.+++..+ .|-..|+.-..++.+.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 555 7899999999999988776 8888888888888888888 99999999998763 4778888776666666
Q ss_pred CC------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCccHhhHHHHHHHHHcCC
Q 005161 168 SN------MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE-AKWYYKELKHLG--YKPNASNLYTLINLHAKYE 238 (711)
Q Consensus 168 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 238 (711)
+. ++++++.++++....+ -|...|+.+-..+.+.|+... +.+.+.++.+.+ -..++..+..+..++...|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 65 7888888888877664 577778877777777776444 445666555432 1235667777777887888
Q ss_pred CHHHHHHHHHHHHH-CCCC
Q 005161 239 DEEGAVNTLDDMLN-MGCQ 256 (711)
Q Consensus 239 ~~~~a~~~~~~~~~-~~~~ 256 (711)
+.++|..+++.+.+ .+|.
T Consensus 273 ~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGG
T ss_pred CHHHHHHHHHHHHhccChH
Confidence 88888888888775 3443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-09 Score=100.52 Aligned_cols=205 Identities=11% Similarity=-0.009 Sum_probs=120.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC---chhHH
Q 005161 468 NQELYDCVINCCARALPIDELSRVFDEMLQHGFTPN---IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV---DVISY 541 (711)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 541 (711)
+...+......+.+.|++++|+..|+++++.. +.+ ...+..+..+|...|++++|...|+.+.+..|. ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555556666666777777766666542 112 445555666666666666666666666665442 23445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 542 NTIIAAYGQ--------NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613 (711)
Q Consensus 542 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (711)
..+..++.. .|++++|+..|+++.+.. |.+......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 555556655 666666666666665542 212222111110 0000000 0111356
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCCcc
Q 005161 614 MIDIYGEQGWINEVVGVLTELKECGLRPD----LCSYNTLIKAYGIA----------GMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 614 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
+...|...|++++|+..|+++++. .|+ ...+..+..+|... |++++|+..++++.+ ..|+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCCh
Confidence 678888999999999999998874 343 35677778888766 888999999999987 567642
Q ss_pred ----hHHHHHHHHHhcchHHH
Q 005161 680 ----TYTNMITALQRNDKFLE 696 (711)
Q Consensus 680 ----~~~~l~~~~~~~~~~~~ 696 (711)
....+...+...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 33444444555555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-07 Score=92.03 Aligned_cols=385 Identities=9% Similarity=-0.041 Sum_probs=202.2
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHHc---CCCchhH
Q 005161 11 AKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN-VEEAEFAFNQMRKL---GLVCESA 86 (711)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~ 86 (711)
+.--+.+|...+..+-. |+++.+..+|+..+.. .|+...|...+....+.++ .+....+|+.+... ++.+...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 55667888888888776 8899999999999874 4788899888887766663 45567778877653 3445677
Q ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 87 YSAMITIYT----RLSLYEKAEEVIRLIREDKVVPNL-ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 87 ~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
|...+..+. .+++.+.+..+|++.+..... +. ..|...... .+......+..++.+..
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~--------------- 150 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENF-ELELNKITGKKIVGDTL--------------- 150 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------
Confidence 888777654 346677888888888774221 21 122211111 11111112222222111
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--C-----CHHHHHHHHHHHHhcCCCccHhhHHHHHHHH
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA--G-----NYREAKWYYKELKHLGYKPNASNLYTLINLH 234 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (711)
+.+..|+.+++.+...-...+...|...+.--... | ..+++..+|+++.... +.+...|...+..+
T Consensus 151 ------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 151 ------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYL 223 (493)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 22333444444333210001222343333321111 0 0234556666666542 23455666666666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHH
Q 005161 235 AKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMK 314 (711)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 314 (711)
...|+.+.|..++++.+.. |....++...+. ..+.++ +++.+... +.. ...+.+.
T Consensus 224 ~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~----~~e~~~---~~~~l~~~---------------~~~-~~~~~~~- 278 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL----VMDEEA---VYGDLKRK---------------YSM-GEAESAE- 278 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH----HTTCTH---HHHHHHHH---------------TC----------
T ss_pred HHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh----hcchhH---HHHHHHHH---------------HHh-hccchhh-
Confidence 6777777777777777776 443332221111 111111 11111110 000 0000000
Q ss_pred HHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCC
Q 005161 315 VLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSV-MGMFTEAEKLYLNLKSSG 393 (711)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 393 (711)
. .........|...+....+.++.+.|..+|+.. +.. ..+...|......-.. .++.+.|..+|+...+.-
T Consensus 279 ----~--~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 279 ----K--VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ----h--hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0 000001234555555555666677777777777 221 1233334322222222 235788888888777652
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005161 394 IRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILK 462 (711)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (711)
+.++..+...+....+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..++++..+
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234555666776777788888888888772 2466677777776777888888887777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-08 Score=90.24 Aligned_cols=182 Identities=10% Similarity=0.000 Sum_probs=125.6
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VDVISYNTIIAAYGQNKNLESMSSTVQEMQ 565 (711)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 565 (711)
++..|++....+ .++......+..++...|++++|++++......++ .+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 34455555677777888888888888888777665 567777788888888888888888888887
Q ss_pred HCCCCC-----ChhhHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 566 FDGFSV-----SLEAYNSMLDAY--GKEG--QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 566 ~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 245555555553 3334 888888888888664 45533334444578888999999998887654
Q ss_pred C-----CC---CCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 637 C-----GL---RPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 637 ~-----~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
. .- .|+ +.++..++......|+ +|.++++++.+ ..|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 2 00 244 6777566666666676 78888888888 67775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=6.1e-09 Score=95.00 Aligned_cols=183 Identities=11% Similarity=-0.011 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 69 AEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKV-VPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 69 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
|...|+.+.+.+.....++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444443322333344555555555555555555555544332 11334444555555555555555555555554
Q ss_pred cCCCC-----CHHHHHHHHHHh--hc--cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 148 AGFSP-----NIVAYNTLMTGY--GK--VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 148 ~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
. .| +..+...|+.++ .. .+++.+|..+|+++.+.. |+..+...++.++.+.|++++|...++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 23 123333333331 11 125555555555554421 32222223333455555555555555544332
Q ss_pred C---------CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 219 G---------YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 219 ~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
. -+.++.++..++......|+ .|.+++.++.+..|..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 0 01133344344433333443 4455555555544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-07 Score=95.82 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 005161 364 HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-GSLKDACAVLETMEKQKDIEPDAYLYCDMLR 442 (711)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (711)
..|...+....+.++.+.|..+|+.. .. ...+..+|......-... ++.+.|..+|+...+..+- +...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 46777777777888999999999999 32 223555665433333333 4799999999998776533 3345666778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 443 IYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
.....|+.+.|..+|+.+. .....|...+..-...|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999983 2567788888877788999999998888774
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4e-09 Score=85.99 Aligned_cols=128 Identities=23% Similarity=0.229 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
|..+...+...|++++|..+|+.+++.+ +.+...+..+...+...|++++|...|+++...++.....+..++.++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4444455555555555555555555443 233444444555555555555555555555555444444455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
|++++|...++.+....+. +..++..++..+.+.|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555554443322 233444444444445555555554444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.1e-08 Score=90.86 Aligned_cols=245 Identities=11% Similarity=-0.011 Sum_probs=158.7
Q ss_pred HHHHccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----H
Q 005161 58 GLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS--LYEKAEEVIRLIREDKVVPNLENWLVMLNAY----S 130 (711)
Q Consensus 58 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 130 (711)
++..+.| .-++|+..++.+...+|....+|+.-..++...| .++++++.++.++..++. +..+|+.....+ .
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 3333444 4468999999999999998899999888888888 899999999998887765 556666655555 4
Q ss_pred hc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH--HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 005161 131 QQ---GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNME--AAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNY 205 (711)
Q Consensus 131 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 205 (711)
.. +++++++.+++.+.+.. +.+-.+|+.-.-++.+.|.++ ++++.++++.+..+ .+...|+.....+...|..
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 44 66777777777777764 336666666655555566665 66666666665443 3444454433333333220
Q ss_pred HHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc-HHHHHHHh
Q 005161 206 REAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN-VPRILKGS 284 (711)
Q Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~ 284 (711)
.+ ...++++.+.+..++...|.+.+.+..+...+.+.|+... +..+.+++
T Consensus 197 ----------------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 197 ----------------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp ----------------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred ----------------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 00 0014556666666666666666666666666666666444 33455555
Q ss_pred hhcc--CCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc-CCCccHhhHHHHH
Q 005161 285 LYQH--VLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK-DTVFEDNLYHLLI 335 (711)
Q Consensus 285 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 335 (711)
...+ ...+..++..++.+|.+.|+.++|.++++.+... ++. ....|+...
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~ 300 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI 300 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence 4432 1236778888888898899999999999988763 433 444555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=116.02 Aligned_cols=153 Identities=10% Similarity=-0.099 Sum_probs=70.6
Q ss_pred HhcCChHHHHHHHHHHh--------HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 26 NKRGCVELGAKWFHMML--------ECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
...|++++|++.++.++ +.. +.+...+..+..++.+.|++++|...|+++.+.+|.+..+|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 34444555555554444 221 223334444444444455555555555555544444444445555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|++++|+..|++..+.++. +...+..+..++.+.|++++ ...|++.++.. +.+...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555544443322 33344444444444455544 44444444432 223444444444444445555555444
Q ss_pred HHHHh
Q 005161 178 LSIKD 182 (711)
Q Consensus 178 ~~~~~ 182 (711)
++..+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 44443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-09 Score=99.58 Aligned_cols=201 Identities=12% Similarity=0.024 Sum_probs=150.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHc----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLEC----DVQP-NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ 83 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 83 (711)
...|......|...|++++|.+.|..+++. |.++ ...+|..+..+|.+.|++++|...|++..+..+..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 346777788899999999999999988874 2112 25688889999999999999999999987754321
Q ss_pred hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---
Q 005161 84 ESAYSAMITIYTRL-SLYEKAEEVIRLIREDKVVP-N----LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNI--- 154 (711)
Q Consensus 84 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 154 (711)
..++..+..+|... |++++|+..|++.+...+.. + ..++..+...+.+.|++++|...+++..+.......
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 35788999999996 99999999999987632111 1 356888899999999999999999999987543322
Q ss_pred ---HHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChh------hHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 005161 155 ---VAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDET------TYRSMIEGWG--RAGNYREAKWYYKELKH 217 (711)
Q Consensus 155 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~--~~g~~~~A~~~~~~~~~ 217 (711)
..|..+..++...|++++|...|++..+.. |+.. .+..++..+. ..+++++|+..|+++..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 156778888999999999999999987642 3211 2334455553 34667888888776644
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-09 Score=92.47 Aligned_cols=187 Identities=7% Similarity=-0.146 Sum_probs=127.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYS 88 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 88 (711)
+...+......+.+.|++++|...|+.+++..+... ...+..+..+|.+.|++++|...|+++.+..|.+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788899999999999999998642211 35677788889999999999999999999888764 3666
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 89 AMITIYTR------------------LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF 150 (711)
Q Consensus 89 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 150 (711)
.+..++.. .|++++|...|++++...+. +..++...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 66666654 45677777777777665433 22222111100 00000000
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 151 SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD--ETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
.....+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456778888999999999999887543211 2457778888999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=93.24 Aligned_cols=143 Identities=10% Similarity=-0.094 Sum_probs=101.2
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKA 103 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (711)
.+...|+++.|+..++...... +.+...+..+..+|.+.|++++|.+.|+++.+.+|.+..+|..+..+|...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 3455677788888887776642 233445556777788888888888888888888887778888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 104 EEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELV-LVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
+..|++..+.++. +..++..+...|.+.|++++|.+. +++..+.. |.++.+|......+...|+
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888887776644 566777777778888887665554 46777654 3356666666666655553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-09 Score=84.76 Aligned_cols=128 Identities=21% Similarity=0.203 Sum_probs=75.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 53 FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
+..+...+...|++++|..+|+.+.+.++....++..++..+...|++++|...++++...++. +...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 4455556666666666666666666666555556666666666666666666666666554332 344555555566666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 133 GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
|++++|...++++.+.. +.+...+..++..+.+.|++++|...|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666655543 22445555555555556666666666655544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-09 Score=98.84 Aligned_cols=167 Identities=14% Similarity=0.010 Sum_probs=110.1
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN-WLVM 125 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 125 (711)
+.+...+..+...+.+.|++++|...|+++.+.+|.+..++..++.+|.+.|++++|...++++....+ +... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHH
Confidence 444555566666677777777777777777777777777777777777777777777777777665443 3222 2222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP-DETTYRSMIEGWGRAGN 204 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 204 (711)
...+.+.++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 333555666677777777777664 3466677777777777777777777777776654321 24556777777777777
Q ss_pred HHHHHHHHHHHH
Q 005161 205 YREAKWYYKELK 216 (711)
Q Consensus 205 ~~~A~~~~~~~~ 216 (711)
.++|...|++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777766654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=93.51 Aligned_cols=163 Identities=14% Similarity=0.038 Sum_probs=111.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA-YS 130 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 130 (711)
.+..+...+.+.|++++|...|+++.+.+|.+..++..+..++...|++++|+..++.+....+ +...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3445666677788888888888888877777777888888888888888888888887765543 33322222111 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 005161 131 QQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP-DETTYRSMIEGWGRAGNYREAK 209 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 209 (711)
..++...|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233344677777777764 3357777778888888888888888888877755432 2456777777788888888888
Q ss_pred HHHHHHHh
Q 005161 210 WYYKELKH 217 (711)
Q Consensus 210 ~~~~~~~~ 217 (711)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-09 Score=92.04 Aligned_cols=164 Identities=11% Similarity=-0.042 Sum_probs=132.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH-H
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI-Y 94 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~ 94 (711)
..+......+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...|+++....| +...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456677788999999999999999999865 55778889999999999999999999999988887 54433333322 2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCChHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 173 (711)
...+...+|+..+++....++. +...+..+...+...|++++|...++++.+..+.+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2333445678999998887654 67888899999999999999999999999875433 356888999999999999999
Q ss_pred HHHHHHHHh
Q 005161 174 QRLFLSIKD 182 (711)
Q Consensus 174 ~~~~~~~~~ 182 (711)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-10 Score=91.35 Aligned_cols=145 Identities=9% Similarity=-0.054 Sum_probs=91.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
|..++...|+++.|+..+.......|.....+..+..+|.+.|++++|++.|++.+..++. +..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3444556677777777777776665555566677777777777777777777777766544 566777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRL-FLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
++|...|++.++.. +.+...+..+..+|.+.|++++|.+. +++..+..+ .++..|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 77777777777664 23566677777777777776654443 466555432 24444554444444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.7e-09 Score=109.03 Aligned_cols=173 Identities=8% Similarity=-0.087 Sum_probs=127.7
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 61 KKSWNVEEAEFAFNQMR--------KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
...|++++|++.|+++. +.+|....++..+..+|...|++++|+..|+++.+.++. +...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 56788888888888888 667777778888888888888888888888888776544 667777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 133 GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYY 212 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 212 (711)
|++++|...|++.++.. +.+...+..+..++.+.|++++ .+.|++..+.++ .+...|..+...+.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888764 3366777788888888888888 888888777543 35667777888888888888888888
Q ss_pred HHHHhcCCCcc-HhhHHHHHHHHHcCCC
Q 005161 213 KELKHLGYKPN-ASNLYTLINLHAKYED 239 (711)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 239 (711)
+++.+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 877664 333 4455556666555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-08 Score=89.53 Aligned_cols=191 Identities=7% Similarity=-0.134 Sum_probs=132.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENWL 123 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 123 (711)
+...+..+...+.+.|++++|...|+.+.+..|.+ ..++..++.+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455667777889999999999999999987765 368899999999999999999999999886644221 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC
Q 005161 124 VMLNAYSQ------------------QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL 185 (711)
Q Consensus 124 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (711)
.+..++.. .|++++|...|+++++.. +.+...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHHH----
Confidence 44555543 456666777777666652 1122222211110 00001110
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 186 EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP--NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
.....+...+.+.|++++|...|+++.+..... ....+..+..++.+.|+.++|...++.+...+|...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 112346778889999999999999998863221 135688889999999999999999999999888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-08 Score=87.60 Aligned_cols=174 Identities=7% Similarity=-0.047 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC----CHHHHHHHHH
Q 005161 487 ELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNK----NLESMSSTVQ 562 (711)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 562 (711)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3455555555543 34444455555555555666666655555442 34444445554444 3 4555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhh----cCCHHHHHHHHHH
Q 005161 563 EMQFDGFSVSLEAYNSMLDAYGK----EGQMENFKNVLRRMKETSCT-FDHYTYNIMIDIYGE----QGWINEVVGVLTE 633 (711)
Q Consensus 563 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 633 (711)
+..+.| +...+..+...|.. .+++++|...+++..+.+.. .++..+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 23334444444443 44555555555555443210 013344444444444 4445555555555
Q ss_pred HHHCCCCCChHhHHHHHHHHhcc-C-----ChHHHHHHHHHHHH
Q 005161 634 LKECGLRPDLCSYNTLIKAYGIA-G-----MVEDAVGLVKEMRE 671 (711)
Q Consensus 634 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~ 671 (711)
..+. ..+...+..|...|... | ++++|+..+++..+
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5442 12333444444444321 1 44555555555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.8e-09 Score=96.64 Aligned_cols=169 Identities=8% Similarity=-0.095 Sum_probs=143.6
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+.+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...++++...+|..........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3445667777788999999999999999999976 557788889999999999999999999999988886555555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCCh
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 170 (711)
..+...++.++|...+++.....+. +...+..+...+...|++++|...+.++++..+.. +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 6688889999999999999887765 77889999999999999999999999999975332 267899999999999999
Q ss_pred HHHHHHHHHHHh
Q 005161 171 EAAQRLFLSIKD 182 (711)
Q Consensus 171 ~~a~~~~~~~~~ 182 (711)
+.|...|++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.6e-08 Score=86.65 Aligned_cols=178 Identities=13% Similarity=0.054 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC----CHHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS----LYEKAEEVI 107 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 107 (711)
.+|.++|+...+.| +...+..|..+|...+++++|...|++..+.+ +..++..+...|.. + ++++|+..|
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 45677788887764 67777778888888888888888888887765 35677778888777 6 788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc----cCChHHHHHHHH
Q 005161 108 RLIREDKVVPNLENWLVMLNAYSQ----QGKLEEAELVLVSMREAGFS-PNIVAYNTLMTGYGK----VSNMEAAQRLFL 178 (711)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 178 (711)
++..+.+ +..++..+...|.. .+++++|...+++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877654 55667677777766 77888888888888776521 126677777777776 678888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 005161 179 SIKDVGLEPDETTYRSMIEGWGRA-G-----NYREAKWYYKELKHLGY 220 (711)
Q Consensus 179 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~~ 220 (711)
+..+.+ .+...+..|...|... | ++++|...|++..+.|.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 877641 3444566666666543 2 77888888888777653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=105.53 Aligned_cols=154 Identities=9% Similarity=-0.028 Sum_probs=96.2
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVI 107 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 107 (711)
.|++++|.+.|+++++.. +.+...+..+..++.+.|++++|.+.|+++.+.+|....++..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356777777777777653 3456667777777777777777777777777777776777777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---CChHHHHHHHHHHHhcC
Q 005161 108 RLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV---SNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 184 (711)
++..+.++. +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.|++..+.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 777665543 45667777777777777777777777777664 23566666777777777 77777777777776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-08 Score=103.67 Aligned_cols=150 Identities=9% Similarity=-0.066 Sum_probs=65.5
Q ss_pred CcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 518 KLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLR 597 (711)
Q Consensus 518 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (711)
|++++|.+.++++.+..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344445555554444444444455555555555555555555555554432 2334444445555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhcc---CChHHHHHHHHHHHH
Q 005161 598 RMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIA---GMVEDAVGLVKEMRE 671 (711)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 671 (711)
+..+.. +.+...+..+...|...|++++|.+.+++..+. .|+ ...+..+..++... |++++|.+.++++.+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 554431 223444555555555555555555555555542 232 44455555555555 555555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-08 Score=87.66 Aligned_cols=192 Identities=11% Similarity=-0.029 Sum_probs=143.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCC-----CC-----------
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAM-------ITIYTRLSLYEKAEEVIRLIREDKVV-----PN----------- 118 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~----------- 118 (711)
..++...|.+.|.++.+.+|....+|..+ ...+...++..+++..++......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57899999999999999999989999988 67888888888888777776551110 01
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC--ChhhH
Q 005161 119 ----LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP--DETTY 192 (711)
Q Consensus 119 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 192 (711)
..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ....+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 2234456777888999999999999888754 433366666778889999999999998665421 11 12357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPN--ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
..+..++.+.|++++|+..|++.......|. .........++...|+.++|..+|+++....|.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7788889999999999999999875433243 335566677788889999999999988887776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-06 Score=80.20 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=74.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ-G-KLE 136 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 136 (711)
..+.+..++|+++++.+...+|....+|+.-..++...| .+++++..++.++..+++ +..+|+.....+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 334445567888888888888887778887777777777 478888888888777766 667777766666665 5 677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNME 171 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (711)
+++++++.+.+.. +.+..+|+.-.-++.+.|.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc
Confidence 7777777777654 335666665444444434333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-08 Score=77.54 Aligned_cols=94 Identities=12% Similarity=0.003 Sum_probs=45.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
..+...|.+.|++++|.+.|+++.+.+|....+|..+..+|.+.|++++|+..|++.++.++. +..+|..+..++...|
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCC
Confidence 334444444455555555555544444444444444455555555555555555444443322 3344444444444555
Q ss_pred CHHHHHHHHHHHHHc
Q 005161 134 KLEEAELVLVSMREA 148 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~ 148 (711)
++++|.+.|++.++.
T Consensus 96 ~~~~A~~~~~~al~l 110 (126)
T 4gco_A 96 EWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555554444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.8e-08 Score=93.13 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKK-SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
.|++.+|.+++++..+.. +.. +.+ .++++.|...|..+ +..|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 456667777776665532 110 122 46666666666543 4566677788887777
Q ss_pred HHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhhccCChHHHHHH
Q 005161 107 IRLIREDKV---VP--NLENWLVMLNAYSQQGKLEEAELVLVSMREAGF---SP--NIVAYNTLMTGYGKVSNMEAAQRL 176 (711)
Q Consensus 107 ~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~ 176 (711)
|++...... .+ ...++..+...|.+.|++++|...+++.++... .+ ...+++.+..+|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776654211 00 123566666677777777777777776654310 11 12455566666666 677777766
Q ss_pred HHHHHhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCcc-HhhHHHHHHHHHcCCCHHHHHHH
Q 005161 177 FLSIKDVGLEP-----DETTYRSMIEGWGRAGNYREAKWYYKELKHLG----YKPN-ASNLYTLINLHAKYEDEEGAVNT 246 (711)
Q Consensus 177 ~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 246 (711)
|++..+..... ...+++.+...+.+.|++++|+..|++..... ..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66655421100 02345555666666666666666666655431 1111 11333333444444555555555
Q ss_pred HHHHH
Q 005161 247 LDDML 251 (711)
Q Consensus 247 ~~~~~ 251 (711)
+++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-06 Score=81.45 Aligned_cols=177 Identities=10% Similarity=0.003 Sum_probs=142.3
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc-C-CH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL-S-LY 100 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 100 (711)
.....+..++|+++++.+++.+ +-+..+|+..-.++...| .+++++..++.+...+|.+..+|+.-..++... + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344555578999999999986 567788888888888888 599999999999999999999999988888877 7 89
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC---
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE--------EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN--- 169 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 169 (711)
++++++++.++..+++ |..+|....-.+.+.|.++ ++.+.++++++.. +.|...|+....++.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 9999999999998876 8888877766666666666 8999999999876 4488889888888877776
Q ss_pred ----hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 005161 170 ----MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN 204 (711)
Q Consensus 170 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 204 (711)
++++++.+++.....+ -|...|+.+-..+.+.|.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 6888888888877654 567777766655555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-06 Score=79.25 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=160.1
Q ss_pred HHHhcCChH-HHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 24 ACNKRGCVE-LGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN----------VEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 24 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
...+.|.+. +|+.++..++..+ +-+..+|+.--.++...|. +++++..++.+...+|.+..+|+.-..
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344667665 7899999999875 4566677765555544443 678999999999999998889988888
Q ss_pred HHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--
Q 005161 93 IYTRLSL--YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK-LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV-- 167 (711)
Q Consensus 93 ~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 167 (711)
++...+. +++++.+++.+...++. |..+|+...-.+...|. ++++.+.++.+++.. +.|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 8888874 78999999999988776 88888887777778887 588999999998876 44777887766655443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCcc-
Q 005161 168 ------------SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA-----------GNYREAKWYYKELKHLGYKPN- 223 (711)
Q Consensus 168 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~- 223 (711)
+.++++++.+.......+ -|...|+-+-..+.+. +.++++++.++++.+.. |+
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 346778888887776553 4666676544444333 34667777777777653 33
Q ss_pred HhhHHHHHH---HHHcCCCHHHHHHHHHHHHHCCCCChhHHHHH
Q 005161 224 ASNLYTLIN---LHAKYEDEEGAVNTLDDMLNMGCQHSSILGTL 264 (711)
Q Consensus 224 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 264 (711)
...+..++. .....+..+++...+.++++.+|.....|..+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 223222221 12234555666666777666665544444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-07 Score=82.80 Aligned_cols=129 Identities=15% Similarity=0.019 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
.+..+...+...|++++|...|+.++ .|+...+..+..++.+.|++++|...|+++.+.++....++..+..+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45566778889999999999999884 56888999999999999999999999999999998888999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 97 LSLYEKAEEVIRLIREDKVVP---------------NLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
.|++++|.+.|+......+.. ...++..+..++.+.|++++|...++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999988754331 12677788888889999999999999988864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=75.35 Aligned_cols=108 Identities=12% Similarity=0.006 Sum_probs=77.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..+...-..|.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..|+++.+.+|....+|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455566667777777777777777777765 4566777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVM 125 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (711)
..|++++|++.|++.++.++. +...+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 777777777777777775543 44444333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.2e-08 Score=90.84 Aligned_cols=173 Identities=11% Similarity=-0.052 Sum_probs=128.1
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHhcCCHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 101 (711)
.++++.|...|..+ ..+|...|++++|...|.++.+..+.. ..+++.+..+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 46677777776654 456778899999999998877643211 357888899999999999
Q ss_pred HHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHhhccCChH
Q 005161 102 KAEEVIRLIREDK---VVP--NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-----NIVAYNTLMTGYGKVSNME 171 (711)
Q Consensus 102 ~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~ 171 (711)
+|+..|++..... -.+ ...++..+...|.. |++++|...+++..+..... ...+++.+..++.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 9999999865431 111 13567778888888 99999999999887642111 1467888899999999999
Q ss_pred HHHHHHHHHHhcC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 172 AAQRLFLSIKDVG----LEPD-ETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 172 ~a~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
+|...|++..+.. ..+. ...+..++..+...|++++|...|++..
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999887531 1111 2256666777778899999999999988
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.9e-08 Score=79.67 Aligned_cols=100 Identities=9% Similarity=-0.019 Sum_probs=75.1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+++...+|.+...|..+..+|...|++++|+..|++....++. +..++..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 34456666677777888888888888888887777777888888888888888888888877776544 55677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 005161 129 YSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~ 149 (711)
|.+.|++++|...|++.++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777888888888888777763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-06 Score=79.42 Aligned_cols=161 Identities=9% Similarity=-0.076 Sum_probs=104.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCchh------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----hhhHHHH
Q 005161 511 LDIYGKAKLFKRVRKLFSMAKKLGLVDVI------SYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV-S----LEAYNSM 579 (711)
Q Consensus 511 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 579 (711)
+..+...|++++|...++...+..+.++. .+..+...+...+++++|+..+++..+..... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566777777777777777665442211 23345556666777788888777777642221 1 2257777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC-hHhHHH
Q 005161 580 LDAYGKEGQMENFKNVLRRMKE----T-SCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKE----CGLRPD-LCSYNT 648 (711)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~ 648 (711)
...|...|++++|...++++.+ . +..+. ..++..+...|...|++++|...+++.++ .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7778888888888888877763 1 11111 22667777788888888888888887765 222222 567777
Q ss_pred HHHHHhccCC-hHHHHHHHHHHHH
Q 005161 649 LIKAYGIAGM-VEDAVGLVKEMRE 671 (711)
Q Consensus 649 l~~~~~~~g~-~~~A~~~~~~~~~ 671 (711)
+..+|.+.|+ +++|.+.++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.3e-07 Score=84.18 Aligned_cols=162 Identities=11% Similarity=0.065 Sum_probs=70.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVV-PNLE----NWLVMLNAYSQQGKLEEAELVLVSMREAGFS-PN----IVAYNTL 160 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 160 (711)
+..+...|++++|...++........ |+.. .+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444555555555555554442211 1110 1112333344444555555555555442111 11 1234555
Q ss_pred HHHhhccCChHHHHHHHHHHHh----c-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcc-HhhHHH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKD----V-GLEP-DETTYRSMIEGWGRAGNYREAKWYYKELKHL----GYKPN-ASNLYT 229 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 229 (711)
..+|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5555555555555555555442 0 0011 1223445555555555555555555554432 11111 334555
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHH
Q 005161 230 LINLHAKYED-EEGAVNTLDDMLN 252 (711)
Q Consensus 230 l~~~~~~~~~-~~~a~~~~~~~~~ 252 (711)
+..++...|+ .++|...++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5555555553 3555555555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-07 Score=80.92 Aligned_cols=124 Identities=9% Similarity=-0.072 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG 622 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (711)
.+...+...|++++|+..+++.. +|+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444455555555555554432 3344555555555555555555555555555432 334445555555555555
Q ss_pred CHHHHHHHHHHHHHCC--------------CCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 623 WINEVVGVLTELKECG--------------LRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 623 ~~~~A~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
++++|...|++..+.. ..|+ ...+..+..+|...|++++|...++++.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555521 0111 14555555666666666666666666555
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-07 Score=77.99 Aligned_cols=127 Identities=14% Similarity=-0.017 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
.+..+...+...|+++.|...|+..++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444445555555555555555555543 23444555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 005161 97 LSLYEKAEEVIRLIREDKVVPNLENW--LVMLNAYSQQGKLEEAELVLVSM 145 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 145 (711)
.|++++|...+++.....+. +...+ ...+..+.+.|++++|...+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555443322 22222 22222244445555555444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.4e-07 Score=84.66 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHH
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGFSVS-----LEAYNSMLDAYGKEGQMENFKNVLRRMKETS---CTFD--HYTYN 612 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~ 612 (711)
..+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..+.. ..+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344445555555555555554444321100 0112223344445556666666655554321 0111 22455
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHC-CCCCC-----hHhHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-cchH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKEC-GLRPD-----LCSYNTLIKAYGIAGMVEDAVGLVKEMREN----GIEPD-KITY 681 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~ 681 (711)
.+...|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+..+++..+. +..+. ..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5555566666666666666555420 00111 135555556666666666666666655431 00011 2345
Q ss_pred HHHHHHHHhcchHHHH-HHHHHHH
Q 005161 682 TNMITALQRNDKFLEA-IKWSLWM 704 (711)
Q Consensus 682 ~~l~~~~~~~~~~~~A-~~~~~~m 704 (711)
..++.+|.+.|++++| ..++++.
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5555556666666665 4444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=77.92 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=94.3
Q ss_pred CCCCc-hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 10 GAKLN-FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 10 ~~~~~-~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
...|+ ...+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|...|++++|...|+++.+.+|.+..+|.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 33443 5677788889999999999999999999986 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+..+|...|++++|+..|++.....
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998865
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.9e-08 Score=80.43 Aligned_cols=99 Identities=16% Similarity=0.047 Sum_probs=58.1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+.+...+|.+..+|..+..+|...|++++|+..|++....++. +..++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 33444455555566666666666666666666655566666666666666666666666665554433 44455555556
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 005161 129 YSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~ 148 (711)
|...|++++|...|+..++.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-07 Score=74.84 Aligned_cols=118 Identities=11% Similarity=0.024 Sum_probs=73.3
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+.+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++...|++++|...|+++.+.++....++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3445666666666677777777777777766653 335566666666666677777777777777666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
.++...|++++|...+++.....+. +...+..+...+.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 6666777777777666666554322 23344444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-08 Score=91.64 Aligned_cols=194 Identities=8% Similarity=-0.105 Sum_probs=113.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+...|++++|...|+.+++.. +.+...|..+..+|.+.|++++|...++++.+.+|....++..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566677777888888888888888888764 34667777777788888888888888888888877777788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
|...|++++|+..|+.....++. +...+...+....+. ..+ ..+........+.+......+...+ .|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 88888888888888776653311 000111111111111 111 1112222223344444444443322 5677777
Q ss_pred HHHHHHHHhcCCCCChh-hHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 005161 174 QRLFLSIKDVGLEPDET-TYRSMIEGWGRA-GNYREAKWYYKELKH 217 (711)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~~~~A~~~~~~~~~ 217 (711)
.+.++...+. .|+.. ....+...+.+. +.+++|..+|.++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777666653 23322 222232223333 456667777766654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-07 Score=77.04 Aligned_cols=126 Identities=15% Similarity=-0.021 Sum_probs=68.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
.+..+...+...|+++.|...|+++.+.++....++..++.++...|++++|...+++.....+. +..++..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 34445555556666666666666666666655566666666666666666666666665554432 44455555555556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHhhccCChHHHHHHHHH
Q 005161 132 QGKLEEAELVLVSMREAGFSPNIVAYNTLM--TGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~ 179 (711)
.|++++|...+++..+.. +.+...+..+. ..+.+.|++++|...++.
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 666666666666655542 12333332222 223444555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.4e-07 Score=72.35 Aligned_cols=98 Identities=20% Similarity=0.187 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
.++..+...+...|++++|.+.|+.+++.. +.+...+..+..++.+.|++++|...|+.+.+.++....++..+..+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 445555555555566666666655555543 2344455555555555555555555555555555544555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 005161 96 RLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~ 114 (711)
..|++++|...++++....
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 5555555555555554433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.8e-06 Score=76.92 Aligned_cols=194 Identities=5% Similarity=-0.061 Sum_probs=141.0
Q ss_pred HccCCHH-HHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 61 KKSWNVE-EAEFAFNQMRKLGLVCESAYSAMITIYTRLSL----------YEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 61 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
.+.|.++ +|+.+++.+...+|....+|+.-..++...+. +++++.+++.+...+++ +..+|+...-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3556655 79999999999999998898877666665554 68899999999887776 788888887778
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC-hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----
Q 005161 130 SQQG--KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN-MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA---- 202 (711)
Q Consensus 130 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 202 (711)
.+.+ .++++...++.+.+.. +.|-.+|+.-.-++...|. ++++++.++.+.+..+ .|..+|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 7777 4899999999999876 4478888877777777787 5899999999988764 5677777665555444
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC-----------CCHHHHHHHHHHHHHCCCCCh
Q 005161 203 ----------GNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY-----------EDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 203 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 258 (711)
+.++++++.+.+.....+ -|...|+.+-..+... +-++++++.++++.+..|++.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 346778888888777632 2555665444444433 235566666666666655543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.5e-08 Score=87.06 Aligned_cols=189 Identities=8% Similarity=-0.052 Sum_probs=145.7
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHH-------HHHHHccCCHHHHHHHHHHHHHcCCCc----------------
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGML-------MGLYKKSWNVEEAEFAFNQMRKLGLVC---------------- 83 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------- 83 (711)
+.++...|.+.|..+.+.. +.....|..+ ..++.+.++..+++..+.+.....|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999986 5677888888 566666666677777777666633221
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHH
Q 005161 84 -----ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPN--IVA 156 (711)
Q Consensus 84 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 156 (711)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. +|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 2345667889999999999999999887765 433355566678889999999999998766532 121 236
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD--ETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999985332243 3456677788899999999999999999863
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-07 Score=74.23 Aligned_cols=117 Identities=15% Similarity=-0.018 Sum_probs=57.5
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|+++.|...|+.+++.. +.+...+..+..++...|++++|...+..+.+..|....++..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3444444455555555555555555555442 234444445555555555555555555555555544444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
...|++++|...++......+. +...+..+...+.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 5555555555555554443322 3334444444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=81.87 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=84.9
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH-HHhcCCH--H
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI-YTRLSLY--E 101 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 101 (711)
+...|++++|...++..++.. +.+...+..+..+|...|++++|...|+++.+.+|.+...+..++.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345677777777777777664 45666777777777777788888888777777777766777777777 6677777 7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+|...++.+...++. +...+..+...+...|++++|...++.+.+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777765543 45666677777777777777777777777653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-06 Score=79.51 Aligned_cols=166 Identities=10% Similarity=-0.047 Sum_probs=121.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--hh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDV------ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFS---VS--LE 574 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 574 (711)
.+...+..+...|++++|.+.+....+..+... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667788888888888887776654322 22344566677888999999999888754211 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-h
Q 005161 575 AYNSMLDAYGKEGQMENFKNVLRRMKET--SCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-L 643 (711)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 643 (711)
+++.+...|...|++++|...++++.+. ..+.+ ..++..+...|...|++++|...+++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999988731 11111 257888999999999999999999998762 11112 5
Q ss_pred HhHHHHHHHHhccCChHHH-HHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDA-VGLVKEMRE 671 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 671 (711)
.+|..+..+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=78.30 Aligned_cols=112 Identities=7% Similarity=-0.053 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 70 EFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
...|+++...+|.....+..+...+...|++++|+..|+.....++. +...|..+..++...|++++|...+++.++..
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34566666666666677888888888888888888888888776654 66777788888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc
Q 005161 150 FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV 183 (711)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (711)
+.++..+..+..++...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346677777888888888888888888887664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-07 Score=73.76 Aligned_cols=119 Identities=16% Similarity=-0.008 Sum_probs=81.0
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+...|+++.|...|+++.+..+....++..++.++...|++++|...++......+. +...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 44556666677777777777777777777777766677777777777777777777777777665433 45566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
+...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777776653 2355556666666555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-07 Score=73.49 Aligned_cols=117 Identities=11% Similarity=-0.072 Sum_probs=73.2
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+...+..+...+...|++++|...|+++.+.++....++..++.+|...|++++|+..+++.....+. +...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 445555666666667777777777777777766666666777777777777777777777766654433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
.+.+.|++++|.+.+++..+.. +.+...+..+..++.+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 6666677777777666666543 2233444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=80.35 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=101.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA-YSQQGKL--E 136 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 136 (711)
+...|++++|...|+...+.+|....+|..++.+|...|++++|...|++....++. +...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 345788999999999999999988899999999999999999999999998876544 56777778877 7788998 9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
+|...++.+.+.. +.+...+..+..++...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998875 3467788888899999999999999999988754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=7.4e-07 Score=71.00 Aligned_cols=113 Identities=23% Similarity=0.180 Sum_probs=73.2
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|+++.|...|+++.+..+....++..++..+...|++++|...++++....+. +..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 4556666667777777777777777777766666666777777777777777777777776654433 455666666667
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005161 130 SQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGY 164 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (711)
...|++++|...++++.+.. +.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 77777777777777766653 22444444444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=87.82 Aligned_cols=95 Identities=9% Similarity=-0.031 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK 585 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 585 (711)
.+..+...+...|++++|...|+.+....+.+...+..+..+|...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334444444555555555555555555554455555555555555555555555555554432 3334445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 005161 586 EGQMENFKNVLRRMKE 601 (711)
Q Consensus 586 ~g~~~~A~~~~~~~~~ 601 (711)
.|++++|...+++..+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.8e-07 Score=71.39 Aligned_cols=98 Identities=13% Similarity=-0.008 Sum_probs=65.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...|......+.+.|++++|...|+..++.. +.+...|..+..++.+.|++++|...|+++.+.+|....+|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3445556666667777777777777776654 445666666666677777777777777777777666666677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 005161 95 TRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~ 113 (711)
...|++++|...|++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777666553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-07 Score=85.96 Aligned_cols=150 Identities=13% Similarity=-0.003 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHH
Q 005161 29 GCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---------------ESAYSAMITI 93 (711)
Q Consensus 29 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~ 93 (711)
+++++|...|+...+.. +.+...+..+...|.+.|++++|...|+++.+..+.. ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444443321 2245566666677777777777777777777766665 3677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
|.+.|++++|+..+++++..++. +..++..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766544 56677777777777777777777777777764 33566677777777777777776
Q ss_pred -HHHHHHHH
Q 005161 174 -QRLFLSIK 181 (711)
Q Consensus 174 -~~~~~~~~ 181 (711)
...|+.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-07 Score=81.12 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=36.1
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCchhHHHHHHHHHHhcCCH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKL------GLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~ 100 (711)
..|++++|.+.++.+.. ........+..+..++...|++++|...|++..+. .+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 44555555553333322 11223444444555555555555555555554431 111123444444555555555
Q ss_pred HHHHHHHHHH
Q 005161 101 EKAEEVIRLI 110 (711)
Q Consensus 101 ~~a~~~~~~~ 110 (711)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=80.79 Aligned_cols=157 Identities=10% Similarity=0.026 Sum_probs=96.1
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED----KV-VPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 135 (711)
...|++++|.+.++.+.........++..+...+...|++++|...+++.... +. .....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45688888888555554422233567888888888888888888888876651 11 11234566677777788888
Q ss_pred HHHHHHHHHHHHc----CCC--CCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC---CCCC--hhhHHHHHHHHHhcCC
Q 005161 136 EEAELVLVSMREA----GFS--PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG---LEPD--ETTYRSMIEGWGRAGN 204 (711)
Q Consensus 136 ~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~ 204 (711)
++|...+++..+. +-. .....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888877776653 101 123446666777777778887777777655321 0111 2224556666667777
Q ss_pred HHHHHHHHHHHHh
Q 005161 205 YREAKWYYKELKH 217 (711)
Q Consensus 205 ~~~A~~~~~~~~~ 217 (711)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=75.98 Aligned_cols=97 Identities=16% Similarity=0.028 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..+..+...+.+.|++++|...|+.+...+|.+...|..+..+|...|++++|+..|+.....++. +...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 344445555556666666666666666666666666666666666666666666666666554433 4445555666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 005161 131 QQGKLEEAELVLVSMREA 148 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~ 148 (711)
..|++++|...++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-06 Score=67.48 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=59.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...++++.+.+|.....+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555556666666666666666666543 334555555566666666666666666666666655555666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 005161 95 TRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~ 114 (711)
...|++++|...++.....+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66666666666666655544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-07 Score=73.23 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=90.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.+ +.+...|..+..+|.+.|++++|...|+++...+|.+..++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34566667788999999999999999999876 56788888999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 005161 94 YTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~ 114 (711)
|...|++++|...|+......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999987754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=84.04 Aligned_cols=155 Identities=14% Similarity=-0.003 Sum_probs=127.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--------------LENWLVMLN 127 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 127 (711)
..++++.|...|+...+..+....++..+...|.+.|++++|+..|++.+...+... ..++..+..
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345666677777666666666678999999999999999999999999888664422 478889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+..+ .+...+..+...+.+.|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 45788999999999999999999999999988653 456778888889999999998
Q ss_pred H-HHHHHHHHhc
Q 005161 208 A-KWYYKELKHL 218 (711)
Q Consensus 208 A-~~~~~~~~~~ 218 (711)
| ...|+.|...
T Consensus 283 a~~~~~~~~~~~ 294 (336)
T 1p5q_A 283 REKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 8 5577777543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.7e-07 Score=70.48 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=77.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+.+.|++++|...|+++.+.+|....+|..+..+|.+.|++++|+..+++....++. +..++..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3456666777778888888888888888888877788888888888888888888888887776544 566777778888
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 005161 130 SQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~ 148 (711)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-06 Score=66.37 Aligned_cols=110 Identities=17% Similarity=0.014 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|++++|...|+.+....|.+...+..++.++...|++++|...+++.....+. +...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4456666777777888888888888888777777777777788888888888888888777765543 556677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 130 SQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...|++++|...++...+.. +.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 77778888877777777653 22444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=68.81 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=53.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PN----LENWLVM 125 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 125 (711)
.+..+...+.+.|++++|+..|+++.+.+|....+|..+..+|...|++++|++.+++.+..++. +. ..++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34445555666666666666666666666655566666666666666666666666655442211 00 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 005161 126 LNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..++...|++++|.+.|++.++.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555556666666666655543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=67.75 Aligned_cols=97 Identities=11% Similarity=-0.040 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--chhHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV--CESAYSAMITI 93 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 93 (711)
..+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+++.+..+. ...++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344444445555555555555555555443 233444444455555555555555555555555544 44455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhC
Q 005161 94 YTRL-SLYEKAEEVIRLIRED 113 (711)
Q Consensus 94 ~~~~-~~~~~a~~~~~~~~~~ 113 (711)
+... |++++|.+.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=70.10 Aligned_cols=101 Identities=16% Similarity=0.021 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--------hHhH
Q 005161 575 AYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD--------LCSY 646 (711)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~ 646 (711)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++. .|+ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHH
Confidence 34456666667777777777777766642 334556667777777777777777777776652 121 1356
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCcch
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKIT 680 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 680 (711)
..+..++...|++++|++.|++.++ ..||+.+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 6667777777777777777777766 4555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.2e-07 Score=69.71 Aligned_cols=94 Identities=14% Similarity=-0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
+..+...+.+.|++++|...|+.+++.. +.+...|..+..++...|++++|+..|+++.+.+|....++..+..+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334445555555555555555555543 334455555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 005161 98 SLYEKAEEVIRLIRE 112 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~ 112 (711)
|++++|+..+++.+.
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=72.80 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=71.7
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|.+.|++++|+..|+++.+.+|....+|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566666677777777777777777777764 34566677777777777777777777777777777767777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 005161 94 YTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~ 114 (711)
|...|++++|...|++.+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 777777777777777766544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=68.87 Aligned_cols=96 Identities=13% Similarity=-0.080 Sum_probs=80.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
.+..+...+.+.|++++|...|+++.+.+|....+|..+..++...|++++|+..|++....++. +...+..+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44556677888899999999999999999888889999999999999999999999988887655 66778888888888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 005161 132 QGKLEEAELVLVSMREA 148 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~ 148 (711)
.|++++|...+++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999888875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-06 Score=74.69 Aligned_cols=131 Identities=17% Similarity=0.070 Sum_probs=80.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE----------------SAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
....+..+...+.+.|++++|...|+++.+..+... .++..+..+|...|++++|+..++....
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345555666666677777777777777766555443 5667777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH-HHHHHHH
Q 005161 113 DKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ-RLFLSIK 181 (711)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 181 (711)
..+. +..++..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..|..+.
T Consensus 117 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 117 IDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred hCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5433 55666677777777777777777777777653 235566666666666666555555 4444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-06 Score=71.06 Aligned_cols=100 Identities=14% Similarity=-0.039 Sum_probs=76.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+++.+.+|....+|..+..+|...|++++|+..|++.+..++. +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45566667777778888888888888888888777777888888888888888888888887776544 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 005161 129 YSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+...|++++|...|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 778888888888888777653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-06 Score=67.64 Aligned_cols=96 Identities=10% Similarity=-0.102 Sum_probs=45.9
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+.+|....+|..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444444444455555555555555544443 223444444444444455555555555555444444444444444555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 005161 95 TRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~ 111 (711)
...|++++|...|+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555544444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.4e-06 Score=67.24 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=69.0
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+...+..+...+...|++++|...|..+.+.+|....+|..+..++...|++++|...++.....++. +...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 455666666777777777777777777777777766667777777777777777777777776665543 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005161 128 AYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~ 148 (711)
++...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 677777777777777666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.6e-06 Score=65.34 Aligned_cols=99 Identities=17% Similarity=0.065 Sum_probs=55.5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-PNLENWLVMLNA 128 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 128 (711)
...+..+...+...|++++|...|+++.+.++....++..+..++...|++++|...+++..+..+. .+...+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555555566666666666666666665555555666666666666666666666655554311 024445555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 005161 129 YSQQ-GKLEEAELVLVSMREA 148 (711)
Q Consensus 129 ~~~~-~~~~~a~~~~~~~~~~ 148 (711)
+.+. |++++|.+.+....+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.3e-06 Score=66.85 Aligned_cols=97 Identities=18% Similarity=0.038 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
..+..+...+...|++++|...|+++.+..+.+ ..+|..+..+|...|++++|+..++......+. +...+..+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHH
Confidence 333444444444444444444444444444433 334444444444444444444444444433222 2334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005161 128 AYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~ 148 (711)
++...|++++|...+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.5e-06 Score=66.80 Aligned_cols=111 Identities=10% Similarity=-0.140 Sum_probs=94.8
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
.+...+..+...+...|++++|.+.|+..++.. |+ ...+..+..+|...|++++|...|+.+.+.++....++.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 356778888889999999999999999999864 55 677888889999999999999999999999988888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
.+..+|...|++++|...|++.....+. +...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 9999999999999999999999886543 444444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.3e-06 Score=73.07 Aligned_cols=156 Identities=7% Similarity=-0.039 Sum_probs=95.4
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN---------------LENWLVM 125 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l 125 (711)
...|+++.|.+.|+.-....+.....+..+...+...|++++|+..|++.....+... ..++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3455666666666544443333456777778888888888888888888776433211 2567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNY 205 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 205 (711)
..++.+.|++++|...++..++.. +.+...+..+..++...|++++|...|++..+..+ .+...+..+...+...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHH
Confidence 777888888888888888877764 34667777777888888888888888888776542 3455666666666666666
Q ss_pred HHHH-HHHHHHHhc
Q 005161 206 REAK-WYYKELKHL 218 (711)
Q Consensus 206 ~~A~-~~~~~~~~~ 218 (711)
.++. ..|..+...
T Consensus 173 ~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 173 RKKDKLTFGGMFDK 186 (198)
T ss_dssp HC------------
T ss_pred HHHHHHHHHHHhcc
Confidence 6665 455555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-06 Score=68.02 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-------hhHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-------ESAYSA 89 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 89 (711)
.+..+...+...|+++.|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+..+.. ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555555443 2334444444455555555555555555544443322 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 005161 90 MITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
++.+|...|++++|.+.|+.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444555555544444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-06 Score=68.63 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PN----LENWLV 124 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 124 (711)
..+..+...+...|+++.|...|.++.+.++....++..++.+|...|++++|...++......+. ++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667777778888888888888888877777777888888888888888888888877654321 11 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005161 125 MLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMT 162 (711)
Q Consensus 125 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (711)
+...+...|++++|.+.++...+.. |+......+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 7777777777777777777777653 35544444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-05 Score=63.52 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=47.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNV---ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIY 94 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 94 (711)
+...+...|++++|...|+.+++... .+. ..+..+..++.+.|++++|...|+.+.+..|.. ..++..++.++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 33445555555555555555555431 112 244444555555555555555555555555544 34455555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 005161 95 TRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~ 113 (711)
...|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-05 Score=63.29 Aligned_cols=96 Identities=16% Similarity=-0.027 Sum_probs=72.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--LENWLVMLNA 128 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 128 (711)
..+...+...|++++|...|+.+.+..|.+. .++..++.++...|++++|...|+.+....+... ..++..+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455667778888888888888888777665 6778888888888888888888888777554311 4566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 005161 129 YSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+...|++++|...++.+.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=67.85 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=65.8
Q ss_pred hcCChHHHHHHHHHHhHcC--CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECD--VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
..|++++|...|+++++.+ -+.+...+..+..+|...|++++|...|+++.+.+|....++..+..+|...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3577888888888888764 23445667777788888888888888888888888887888888888888888888888
Q ss_pred HHHHHHHhCC
Q 005161 105 EVIRLIREDK 114 (711)
Q Consensus 105 ~~~~~~~~~~ 114 (711)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888876654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=64.18 Aligned_cols=97 Identities=11% Similarity=-0.072 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCC------CHh-----hHHHHHHHHHccCCHHHHHHHHHHHHHc-----
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQP------NVA-----TFGMLMGLYKKSWNVEEAEFAFNQMRKL----- 79 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 79 (711)
..+...-..+...|++++|+..|+.+++..+.. +.. .|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344555666777888888888888887754220 222 6666777777777777777777777776
Q ss_pred --CCCchhHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 80 --GLVCESAY----SAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 80 --~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
+|....+| +....++...|++++|+..|++.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666 7777777777777777777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.1e-05 Score=76.62 Aligned_cols=196 Identities=7% Similarity=-0.076 Sum_probs=134.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCcc----------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--Cc
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPN----------------IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VD 537 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 537 (711)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4566788999999999999887532211 12356778888899999999998887665332 22
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-
Q 005161 538 V----ISYNTIIAAYGQNKNLESMSSTVQEMQFD----GFSV-SLEAYNSMLDAYGKEGQMENFKNVLRRMKET--SCT- 605 (711)
Q Consensus 538 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~- 605 (711)
. .+.+.+...+...|+++.+..++...... +..+ -..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 23334444555678888888888876543 2222 2446677888888889999999988887642 111
Q ss_pred -C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 606 -F-DHYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 606 -~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+ ....+..++..|...|++++|..++++.... +.+|. ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2346777888888899999999988887651 11111 24566667778888899999888888875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=80.88 Aligned_cols=123 Identities=15% Similarity=0.036 Sum_probs=69.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---------------ESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
...+..+...|.+.|++++|...|+++.+..+.. ..+|..+..+|.+.|++++|+..+++++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444455555555555555555555555544443 3556666666666666666666666665554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 115 VVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
+. +..++..+..+|...|++++|...|+++++.. +.+...+..+..++.+.++++++.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45556666666666666666666666666553 224455555666666666555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=7e-05 Score=74.92 Aligned_cols=195 Identities=11% Similarity=-0.050 Sum_probs=111.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCch-----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCE-----------------SAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-PNL 119 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 119 (711)
+.+.+.|++++|++.|..+.+..+... .++..++..|...|++++|.+.+..+...... ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344556666666666666665544321 23566777777778887777777765542111 111
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCC----
Q 005161 120 ----ENWLVMLNAYSQQGKLEEAELVLVSMREA----GFSP-NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE---- 186 (711)
Q Consensus 120 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 186 (711)
.+.+.+...+...|+++.|..+++..... +..+ -..++..++..+...|++++|..+++++...-..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11222223333457777777777666532 1111 2345667777777778888888777766532111
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcc--HhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005161 187 P-DETTYRSMIEGWGRAGNYREAKWYYKELKHL----GYKPN--ASNLYTLINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 187 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
+ ....+..++..|...|++++|..++++.... +..+. ...+..+...+...++++.|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2335667777777888888888887776542 11111 23344555566677777777766665543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=67.06 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=76.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHc--------C---------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLEC--------D---------VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMR 77 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 77 (711)
...+...-..+.+.|++++|...|...++. . .+.+...|..+..+|.+.|++++|...++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677778888999999999999988875 1 02233566677777788888888888888888
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
+.+|....+|..++.+|...|++++|...|+..+..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8887777788888888888888888888888777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-06 Score=84.67 Aligned_cols=118 Identities=14% Similarity=-0.003 Sum_probs=60.4
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKA 103 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (711)
.+.+.|++++|.+.|+++++.. +.+...|..+..+|.+.|++++|+..++++.+.+|....+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445556666666666665543 334555555555555666666666666666665555555555566666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005161 104 EEVIRLIREDKVVPNLENWLVMLNA--YSQQGKLEEAELVLV 143 (711)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 143 (711)
++.|++..+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666555544322 22233333322 445555555555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.8e-05 Score=76.29 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=91.9
Q ss_pred hcCCh-HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 27 KRGCV-ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN----------VEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 27 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
+.|.+ ++|++.++.+++.. +-+...|+..-.++...|+ ++++++.++.+.+.+|.+..+|+.-..++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34433 46677777777765 4456666666666655555 777777777777777777777777777777
Q ss_pred hcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 96 RLS--LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG-KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 96 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
+.+ +++++++.++++.+.++. +..+|+...-.+.+.| .++++.+.++++++.. +.+...|+....++.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 777 557777777777776665 6667776666666666 6777777777777664 3366666665555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=66.94 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hHh
Q 005161 576 YNSMLDAYGKEGQMENFKNVLRRMKET----SCTF-DHYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-LCS 645 (711)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 645 (711)
+..+...+...|++++|...+++..+. +.++ ....+..+...+...|++++|...+++..+. +..+. ..+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444444455555555555444321 0000 0123344444444555555555555444431 10011 223
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
+..+..+|...|++++|.+.+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444444455555544444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=77.37 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
..+|..+..+|.+.|++++|+..+++.++.++. +..++..+..+|...|++++|...+++..+.. +.+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555555555555555555555555554432 44455555555555555555555555555542 2244444445555
Q ss_pred hhccCChHHHH
Q 005161 164 YGKVSNMEAAQ 174 (711)
Q Consensus 164 ~~~~~~~~~a~ 174 (711)
+.+.++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.2e-06 Score=83.46 Aligned_cols=120 Identities=16% Similarity=-0.033 Sum_probs=79.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (711)
...+.+.|++++|.+.|+++.+.+|....+|..+..+|.+.|++++|++.+++..+.++. +..++..+..+|.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 344556778888888888888777777777777788888888888888888777776544 5566777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--hhccCChHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTG--YGKVSNMEAAQRLFL 178 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 178 (711)
+|.+.+++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777776532 233444444444 555666666666665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-05 Score=62.28 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=62.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-------chh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV-------CES-----AYSAMITIYTRLSLYEKAEEVIRLIRED------ 113 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 113 (711)
.+......+.+.|++++|+..|+++.+.+|. ... +|..+..++.+.|++++|+..+++.+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4455666777888888888888888887776 222 6777777777777777777777766654
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 114 -KVVPNLENW----LVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 114 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
++. +...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 322 33445 5555666666666666666666554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.2e-05 Score=78.54 Aligned_cols=154 Identities=14% Similarity=0.024 Sum_probs=121.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--------------LENWLVMLN 127 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 127 (711)
..++++.|...|+...+..+.....|..+...|.+.|++++|+..|++.+...+... ..+|..+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 455666777777666666666678899999999999999999999999887543322 578888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+..+ .+...+..+...+.+.+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 44788899999999999999999999999988643 355678888888888888887
Q ss_pred HH-HHHHHHHh
Q 005161 208 AK-WYYKELKH 217 (711)
Q Consensus 208 A~-~~~~~~~~ 217 (711)
+. ..+..|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 76 45555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.4e-05 Score=64.63 Aligned_cols=98 Identities=18% Similarity=0.054 Sum_probs=70.6
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHc------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKL------------------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
...+......+.+.|++++|...|..+.+. ++....+|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888889999999999888776 33334567777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 112 EDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..++. +..+|..+..++...|++++|...++...+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 65543 5566667777777777777777777777765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-05 Score=75.57 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005161 119 LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEG 198 (711)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 198 (711)
..+|..+..+|.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+..+ .+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4556666667777777777777777777653 23566666677777777777777777777666432 244555555566
Q ss_pred HHhcCCHHHHH
Q 005161 199 WGRAGNYREAK 209 (711)
Q Consensus 199 ~~~~g~~~~A~ 209 (711)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65566655554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=66.38 Aligned_cols=96 Identities=17% Similarity=0.022 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------h
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQ-PN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------E 84 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~ 84 (711)
.++..+...+...|++++|...++.+++.... ++ ...+..+..++...|++++|...++...+..+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555555666666777776666666553111 11 1244455555566666666666666554322110 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
.++..+..++...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=9.1e-06 Score=77.65 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..+..+-..+.+.|++++|...|+.+++.. |+... +...|+.+++...+. ..+|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 334455556666777777777777766542 33221 111222222222110 135666777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCChHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGY-GKVSNMEAAQ 174 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~ 174 (711)
+.|++++|+..+++.+..++. +..++..+..+|...|++++|...|++..+.. +.+...+..+.... ...+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776665433 55666677777777777777777777776653 22344444444442 3345566666
Q ss_pred HHHHHHHhc
Q 005161 175 RLFLSIKDV 183 (711)
Q Consensus 175 ~~~~~~~~~ 183 (711)
..|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 677666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00018 Score=73.71 Aligned_cols=188 Identities=7% Similarity=-0.083 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL----------YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG- 133 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 133 (711)
.-++|++.++.+...+|....+|+.-..++...|+ ++++++.++.+...+++ +..+|....-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 45678999999999999988899888888888777 88999999998887776 7788888888888888
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 005161 134 -KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS-NMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWY 211 (711)
Q Consensus 134 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 211 (711)
+++++.+.++++.+.. +.+..+|+.-.-++.+.| .++++.+.++++.+..+ -+..+|+.....+.+.+....
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~---- 196 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD---- 196 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC----
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc----
Confidence 6688888888888875 347777877777777777 78888888888777554 456666665555443211100
Q ss_pred HHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc
Q 005161 212 YKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN 276 (711)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (711)
.+.. . -...+.++++.+.+.+++...|.....+..+...+.+.++.++
T Consensus 197 ------~~~~-~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 ------SGPQ-G----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ------SSSC-C----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ------cccc-c----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0000 0 0001234666666666666666666666666666666666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.1e-06 Score=64.63 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=64.3
Q ss_pred ccCCHHHHHHHHHHHHHcC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLG---LVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
..|++++|+..|+++.+.+ |....++..+..+|...|++++|+..|++....++. +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888888874 444677888888888888888888888888776655 566777788888888888888
Q ss_pred HHHHHHHHHcC
Q 005161 139 ELVLVSMREAG 149 (711)
Q Consensus 139 ~~~~~~~~~~~ 149 (711)
...+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=75.12 Aligned_cols=146 Identities=14% Similarity=0.005 Sum_probs=78.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 53 FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
+..+...+.+.|++++|...|.++....+... .+...+++.++...+. ..+|..+..+|.+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44455555566666666666666665554321 1122233333322221 13778889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCHHHHHHH
Q 005161 133 GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEG-WGRAGNYREAKWY 211 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~ 211 (711)
|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+..+ .+...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 44788999999999999999999999999877542 234445555444 3345778888999
Q ss_pred HHHHHhc
Q 005161 212 YKELKHL 218 (711)
Q Consensus 212 ~~~~~~~ 218 (711)
|..|...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 9988765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=7.4e-05 Score=74.38 Aligned_cols=125 Identities=10% Similarity=-0.043 Sum_probs=82.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CC-CCCC-hHhHHH
Q 005161 583 YGKEGQMENFKNVLRRMKET---SCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKE-----CG-LRPD-LCSYNT 648 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~ 648 (711)
+...|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++.++ .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766541 11222 33677777888888888888888877664 11 1233 456788
Q ss_pred HHHHHhccCChHHHHHHHHHHHH---cCCCCCc----chHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 649 LIKAYGIAGMVEDAVGLVKEMRE---NGIEPDK----ITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 649 l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
|...|...|++++|+.++++..+ .-+.|+. .+...+..++...+++++|...+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887653 1133432 34556667777788888888888887664
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.2e-05 Score=59.51 Aligned_cols=81 Identities=10% Similarity=-0.072 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..|...|+.+++.. +.+...+..+..+|...|++++|...|+++.+.+|....+|..+..+|...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788887764 45677788888888888999999999998888888878888888888888899999888888876
Q ss_pred hC
Q 005161 112 ED 113 (711)
Q Consensus 112 ~~ 113 (711)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.9e-06 Score=63.27 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=29.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (711)
.+..+...+...|++++|...|+++.+.+|....+|..+..+|...|++++|+..+++....
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33444444444455555555555444444444444444455555555555555555544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.3e-05 Score=62.05 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=63.1
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hhHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ESAY 87 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 87 (711)
+...+..+...+...|++++|.+.|+.+++.. +.+...+..+..++.+.|++++|...|+++.+.+|.. ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45566667777777777777777777777764 4456667777777777777777777777777777765 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 005161 88 SAMITIYTRLSLYEKAEEVI 107 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~ 107 (711)
..+..++...|+++.|...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55666666666555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.9e-05 Score=62.51 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=70.3
Q ss_pred HhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCH----------HHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 26 NKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNV----------EEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
.+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|+++.+.+|....+|+.+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556788888888888876 56777888777777777654 58888888888888888888888888888
Q ss_pred hcC-----------CHHHHHHHHHHHHhCCCCCCHHHH
Q 005161 96 RLS-----------LYEKAEEVIRLIREDKVVPNLENW 122 (711)
Q Consensus 96 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 122 (711)
..| ++++|++.|++.++.+ |+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHH
Confidence 764 6777777777777654 443344
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00017 Score=52.97 Aligned_cols=77 Identities=19% Similarity=0.146 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
.+..+...+...|++++|...|+..++.. +.+...+..+..++.+.|++++|...|+++.+.+|....++..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444444455555555555555554432 223344444444445555555555555555544444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=53.55 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=54.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|++++|...|++..+.+|....++..+..++...|++++|...+++....++. +..++..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 4456666667777777777777777777777766677777777777777777777777777665433 444555554444
Q ss_pred H
Q 005161 130 S 130 (711)
Q Consensus 130 ~ 130 (711)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00049 Score=55.32 Aligned_cols=109 Identities=8% Similarity=-0.090 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHH
Q 005161 553 NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVV 628 (711)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 628 (711)
++++|+..|++..+.| .+... +...|...+..++|.+.|++..+.| +...+..|...|.. .+|+++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666555554 22222 4444444455555555555555532 44445555555554 45555566
Q ss_pred HHHHHHHHCCCCCChHhHHHHHHHHhc----cCChHHHHHHHHHHHHc
Q 005161 629 GVLTELKECGLRPDLCSYNTLIKAYGI----AGMVEDAVGLVKEMREN 672 (711)
Q Consensus 629 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 672 (711)
..|++..+.| ++..+..|...|.. .+++++|...+++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6655555532 34445555555555 55555555555555553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=6.5e-05 Score=60.51 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=76.9
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH----------HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE----------KAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
.+.+.+++|.+.++...+.+|....+|+.+..++...++++ +|+..|++.+..++. +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999988764 888888888887655 6677888888887
Q ss_pred hcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 131 QQG-----------KLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 131 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
..| ++++|.+.|++.++. .|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 764 788888888887776 45544444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00095 Score=53.62 Aligned_cols=110 Identities=10% Similarity=-0.034 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK----EGQMENFKN 594 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 594 (711)
++++|.+.|++..+.+.+... +...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 445555555555555433322 4444555555555666666655543 34445555555555 566777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCC
Q 005161 595 VLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVVGVLTELKECG 638 (711)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (711)
.|++..+.| ++..+..|...|.. .+|+++|...|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766643 45556666666666 667777777777777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=56.57 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 68 EAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 68 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
.|...|+.+.+.+|.+..++..+..+|...|++++|+..|++....++. +..++..+..++...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677888888888888888888999999999999999999988876644 566788888888888999999888888876
Q ss_pred c
Q 005161 148 A 148 (711)
Q Consensus 148 ~ 148 (711)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00022 Score=70.94 Aligned_cols=123 Identities=12% Similarity=-0.022 Sum_probs=80.4
Q ss_pred HhcCCHHHHHHHHHHHHHC-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCC---C-HHHHHHH
Q 005161 549 GQNKNLESMSSTVQEMQFD-----G--FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE---TSCTF---D-HYTYNIM 614 (711)
Q Consensus 549 ~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~---~-~~~~~~l 614 (711)
...|++++|+.++++..+. | .+....+++.+..+|...|++++|..++++.++ .-+.| + ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455566665555554432 1 112345667777777888888888877777653 11122 2 3367888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH-----CCC-CCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 615 IDIYGEQGWINEVVGVLTELKE-----CGL-RPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 615 ~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
...|...|++++|..++++..+ .|- .|+ ..+.+.+..++...+.+++|...|+++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888764 221 122 34456677788888888999999888876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00018 Score=54.01 Aligned_cols=66 Identities=18% Similarity=0.042 Sum_probs=52.6
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
+.+...+..+..+|.+.|++++|...|+++.+.+|....+|..+..+|...|++++|...|++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667777788888888888888888888888887777888888888888888888888887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00083 Score=50.31 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=44.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 80 GLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
+|.+..++..+..+|...|++++|+..|++....++. +..+|..+..+|...|++++|.+.+++.++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566777777777777777777777776665543 445666677777777777777777776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.33 E-value=4.4e-07 Score=85.42 Aligned_cols=234 Identities=14% Similarity=0.097 Sum_probs=117.5
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
.+.+|..|..+..+.+.+.+|.+-|=+. .++..|..++.+..+.|++++-...++..++....|. .=+.++-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHH
Confidence 3456666666666666666665543211 1233466666666677777776666665544332222 23356666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
|++.+++.+..+.+ . .|+..-...+..-|...|.++.|.-+|..+.. |.-|...+++.|++..|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 77766655433222 1 24444445556666666666666666544332 22233334444444444
Q ss_pred HHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhcc
Q 005161 209 KWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQH 288 (711)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (711)
.+.-++ -.++.||..+-.+|...+++.-|...--.++-..- -+..++..|...|.+++-..+++..+...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad----eL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD----ELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS----CCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH----HHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 333221 12445566666666666655544443333332211 11234445556666666666666655321
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 289 VLFNLTSCSILVMAYVKHGLIDDAMKVLG 317 (711)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 317 (711)
......++-|.-.|++- ++++..+.++
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 22455566666555543 3444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.011 Score=55.21 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHH
Q 005161 605 TFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTN 683 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 683 (711)
+.++..|..+...+...|++++|...+++++.. .|+...|..+...+...|++++|.+.++++.. +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 556677777776677778888888888888885 47777777778888888888888888888887 6777666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00055 Score=51.23 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCES-AYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
..+.+.|++++|...|+.+.+.+|.... ++..+..+|...|++++|.+.|++....+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555555555555555555544 55555555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.22 E-value=3e-06 Score=79.97 Aligned_cols=74 Identities=7% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 005161 544 IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGW 623 (711)
Q Consensus 544 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (711)
-+..|.+.++|++++.+.++ ...|--.+......|+.+-|.++++-..+.| +...|.+.+..|...=+
T Consensus 460 AA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlr 527 (624)
T 3lvg_A 460 AAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLR 527 (624)
T ss_dssp HHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSS
T ss_pred HHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccC
Confidence 33445566666665543321 1122223334445666666666666666543 33445555555544444
Q ss_pred HHHHHH
Q 005161 624 INEVVG 629 (711)
Q Consensus 624 ~~~A~~ 629 (711)
.+-+++
T Consensus 528 pDvVlE 533 (624)
T 3lvg_A 528 PDVVLE 533 (624)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0069 Score=56.56 Aligned_cols=125 Identities=9% Similarity=0.058 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----cC-CHHHHH---HHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHH
Q 005161 520 FKRVRKLFSMAKKLGLVDVISYNTIIAAYGQ----NK-NLESMS---STVQEMQF-DGFSVSLEAYNSMLDAYGKEGQME 590 (711)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~~a~---~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 590 (711)
..+|..+|+++.+..|.....+..+..+|.. .+ ...... ..+..... ...+.+..+|..+...+...|+++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence 4667777777777766665555554444431 10 111111 11111111 123567777877777777789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 005161 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNT 648 (711)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 648 (711)
+|...+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 295 ~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 295 ESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 9999999999864 7877888888889999999999999999988 5787776644
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00066 Score=50.76 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=66.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVA-TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS 98 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (711)
.....+...|++++|...|+.+++.. +.+.. .+..+..+|...|++++|...|+++.+.+|....++.. +
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34567889999999999999999875 44566 88889999999999999999999999999987666632 4
Q ss_pred CHHHHHHHHHHHH
Q 005161 99 LYEKAEEVIRLIR 111 (711)
Q Consensus 99 ~~~~a~~~~~~~~ 111 (711)
.+.++...|++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 4555666655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0038 Score=45.53 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=58.1
Q ss_pred CCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 47 QPNVATFGMLMGLYKKSWN---VEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
+.+...+..+..++...++ .++|..+|++..+.+|.+..++..+...+.+.|++++|+..|+.+++.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677777777777764444 689999999999999999899999999999999999999999998886643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.023 Score=50.73 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhcc-----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCH
Q 005161 135 LEEAELVLVSMREAGFSPN---IVAYNTLMTGYGKV-----SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA-GNY 205 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 205 (711)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.++.-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45667777777775 344 55778888888774 88888888888888765433467777777777774 888
Q ss_pred HHHHHHHHHHHhcCCC--ccHhhH
Q 005161 206 REAKWYYKELKHLGYK--PNASNL 227 (711)
Q Consensus 206 ~~A~~~~~~~~~~~~~--~~~~~~ 227 (711)
++|...+++....... |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888887655 554333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0027 Score=62.08 Aligned_cols=87 Identities=5% Similarity=-0.133 Sum_probs=65.6
Q ss_pred hcCCHHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CC-CCCC-hHhHHHHH
Q 005161 585 KEGQMENFKNVLRRMKE---TSCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKE-----CG-LRPD-LCSYNTLI 650 (711)
Q Consensus 585 ~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~ 650 (711)
..|++++|..++++.++ .-+.|+ ..+++.|..+|...|++++|..++++.++ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56788999998888765 212232 24788888888889999999999888875 22 2334 45688888
Q ss_pred HHHhccCChHHHHHHHHHHHH
Q 005161 651 KAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 651 ~~~~~~g~~~~A~~~~~~~~~ 671 (711)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999999988887
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.003 Score=61.78 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=56.9
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCC-HHHHHHHH
Q 005161 550 QNKNLESMSSTVQEMQFD---GFSV----SLEAYNSMLDAYGKEGQMENFKNVLRRMKE-----TS-CTFD-HYTYNIMI 615 (711)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~~~~l~ 615 (711)
..|++++|+.++++..+. -+.| ...+++.+..+|...|++++|..++++.++ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 566777888777776542 1112 235667777777788888888888877663 11 1122 23677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 005161 616 DIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 616 ~~~~~~g~~~~A~~~~~~~~~ 636 (711)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 778888888888887777765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0095 Score=43.40 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 605 TFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+.++..+..+..++...++ .++|..++++.++ +.|+ +.....+...+...|++++|+..|+++.+ ..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 4556666666666654443 5778888888777 3555 66777777778888888888888888876 4454
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0077 Score=58.99 Aligned_cols=92 Identities=12% Similarity=-0.007 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CC-CCCC-hHh
Q 005161 580 LDAYGKEGQMENFKNVLRRMKET---SCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKE-----CG-LRPD-LCS 645 (711)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~ 645 (711)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|..+++++++ .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55667889999999999998752 12233 34788899999999999999999998875 12 2333 467
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
++.|...|...|++++|+.+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999999987
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.022 Score=50.82 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 005161 66 VEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRL-----SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ-GKLEE 137 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 137 (711)
...|...++++.+.+|.. ..+|..++..|.+. |+.++|.+.|++.+..++.-+..++....+.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 556788888888888873 45788888888884 88888888888887766433466677777777774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHH
Q 005161 138 AELVLVSMREAGFS--PNIVAYNTL 160 (711)
Q Consensus 138 a~~~~~~~~~~~~~--~~~~~~~~l 160 (711)
+.+.+++.+...+. |+....|.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 88888888887655 555444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0061 Score=59.71 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=71.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HH
Q 005161 544 IIAAYGQNKNLESMSSTVQEMQFDG---FSV----SLEAYNSMLDAYGKEGQMENFKNVLRRMKET---SCTFD----HY 609 (711)
Q Consensus 544 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~ 609 (711)
.+..+...|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.+++++++. -..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556778899999999999887641 112 2457788889999999999999999988741 12222 33
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788899999999999999999998876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.016 Score=46.04 Aligned_cols=82 Identities=15% Similarity=-0.005 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcC-C-CchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW---NVEEAEFAFNQMRKLG-L-VCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
..+.+-|....+.+ +++..+...+.-++++++ +++++..+|+.+.+.+ | ...+.+..+..+|.+.|++++|++.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555555544 355555555666666666 4556666666666655 3 2245566666666666666666666
Q ss_pred HHHHHhCC
Q 005161 107 IRLIREDK 114 (711)
Q Consensus 107 ~~~~~~~~ 114 (711)
++.+++..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66666644
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.015 Score=43.59 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=54.0
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcC------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECD------VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESA 86 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 86 (711)
++...+..+-..+.+.|++..|..+|+.+++.- ..+....+..|..++.+.|+++.|...++.+.+..|....+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 455566677778888888888888888877641 12345566777777778888888888888887777766544
Q ss_pred HHH
Q 005161 87 YSA 89 (711)
Q Consensus 87 ~~~ 89 (711)
.+.
T Consensus 83 ~~n 85 (104)
T 2v5f_A 83 NGN 85 (104)
T ss_dssp HHH
T ss_pred Hhh
Confidence 333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.024 Score=45.13 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS---LYEKAEEVIRLIREDK-VVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
.+..+.+.|......++.+..+...+..++++.+ +.++++.+++...+.+ +.-+...+-.+.-++.+.|++++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4556667777777777777788888888888877 5568888888877754 21134556667777788888888888
Q ss_pred HHHHHHHc
Q 005161 141 VLVSMREA 148 (711)
Q Consensus 141 ~~~~~~~~ 148 (711)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888886
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.40 E-value=1.3 Score=47.17 Aligned_cols=263 Identities=10% Similarity=-0.052 Sum_probs=138.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C-----CChhhHHHHH
Q 005161 405 VRMYVKAGSLKDACAVLETMEKQK-DIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGI--T-----WNQELYDCVI 476 (711)
Q Consensus 405 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~ 476 (711)
.-+....|+.++++.++....... ...+....-..+.-+....|..+++..++...+...- . +....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 344666788888888887654311 1112222223333344556665677777777655421 0 1111122222
Q ss_pred HHHHccCC-HHHHHHHHHHHHhCCCCccH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 477 NCCARALP-IDELSRVFDEMLQHGFTPNI--ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553 (711)
Q Consensus 477 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 553 (711)
-+..-.|. -+++.+.+..++... .+.. ...-.+...+.-.|+.+....++..+.+....+..-...+.-++...|+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 23333332 245566666655432 1111 1122333445567888888888887765432222223334444557788
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005161 554 LESMSSTVQEMQFDGFSVSLEAYN--SMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVL 631 (711)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (711)
.+.+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888877642 22222222 3344566778887777788888763 1223332223333444566666777777
Q ss_pred HHHHHCCCCCChHhHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 005161 632 TELKECGLRPDLCSYNTLIKAYGIAGMV-EDAVGLVKEMRE 671 (711)
Q Consensus 632 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 671 (711)
+.+.+.+ .|...--..+.-+....|+. .+++..+..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6665542 44444334444444445443 678888888863
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.23 Score=37.82 Aligned_cols=63 Identities=21% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 005161 437 YCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF 500 (711)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 500 (711)
...-+..+...|..|+..+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444444455555555555554333 2234445555555555555555555555555555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.22 Score=54.19 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=21.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005161 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMA 530 (711)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 530 (711)
..|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345555555543221 23445555555555555555555555433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.23 Score=53.95 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
..++..+.+.|.+++|+++.+. | . .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~--~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------Q--D---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------H--H---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------c--c---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555666666666666655421 1 0 1122234557777776654322 2556677777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
++++.|.+.|.++.. |..+...+...|+.+....+.+...
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777766543 3333444444555555444444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.048 Score=40.78 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC------CCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKECG------LRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+..-+..+...+...|+++.|...|++..+.- -.+...++..|..+|.+.|++++|+..++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 33445566666777777777777777666520 112356677777888888888888888888776 66754
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.094 Score=41.02 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=17.4
Q ss_pred chHhHHHHHHHHHhcCCh------HHHHHHHHHHhHc
Q 005161 14 NFQLFNTLIYACNKRGCV------ELGAKWFHMMLEC 44 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~------~~a~~~~~~~~~~ 44 (711)
|..+|-..+...-..|++ +...++|+.++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 445555555555555665 5555566655553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.11 Score=40.54 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHH
Q 005161 203 GNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQ 266 (711)
Q Consensus 203 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 266 (711)
++.++|.++|+.+.+.+-+. ...|....+.-.+.|++..|+.++...+..++.+...+...++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 56666666666665542222 4555555555566777777777777777766665544444333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.51 Score=38.62 Aligned_cols=104 Identities=9% Similarity=0.019 Sum_probs=63.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (711)
.....+.|+++.|.++.+.+ .....|..+.......|+++-|.+.|+...+ +..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34445678888887776654 3356788888888888888888887776543 223333455567766
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
....+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 6665555444433 1233333444567777777777543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.52 Score=38.56 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 131 QQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555555544332 24445555555555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.098 Score=39.90 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLES---MSSTVQEMQFDGFS-VSLEAYNSMLDAYGKEGQMENFKN 594 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 594 (711)
....+.+-+......+.++..+-..+.+++.+.++... ++.+++++.+.+.+ ........+.-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34555555665555566777777777777777776655 67777776665411 133344455566777777777777
Q ss_pred HHHHHHHc
Q 005161 595 VLRRMKET 602 (711)
Q Consensus 595 ~~~~~~~~ 602 (711)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777763
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.59 E-value=3.1 Score=44.50 Aligned_cols=155 Identities=9% Similarity=-0.053 Sum_probs=70.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHhcCCHHH
Q 005161 479 CARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVI--SYNTIIAAYGQNKNLES 556 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 556 (711)
+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.....|... .-..+.-+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 344455555556665555421 111111122222233556666666666666553322221 12234445666677666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHH
Q 005161 557 MSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWI-NEVVGVLTELK 635 (711)
Q Consensus 557 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 635 (711)
...++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .++..++..+.
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 666666666531 1222222222223334555555666665554432 33333222222333333332 46666666665
Q ss_pred H
Q 005161 636 E 636 (711)
Q Consensus 636 ~ 636 (711)
.
T Consensus 657 ~ 657 (963)
T 4ady_A 657 K 657 (963)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.67 Score=35.42 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGI 674 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 674 (711)
.+...++.+..+|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344444555555555555555555322 1344555555555555555555555555555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.24 Score=37.80 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK---AEEVIRLIREDK-VVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
.+..+.+.|......+.+...+-..+..++++..+... ++.+++.+...+ +.-.....-.+.-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444445554444455555555556666666555544 555555555443 11122333444555556666666666
Q ss_pred HHHHHHHc
Q 005161 141 VLVSMREA 148 (711)
Q Consensus 141 ~~~~~~~~ 148 (711)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.58 E-value=6 Score=38.79 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 448 GMLDKLSYLYYKILKS-----GITWNQELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
|+++.|++.+..+.+. ...........++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6677777776555432 2445566777788888888888887777665554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.64 Score=48.52 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 260 ILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 260 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
++..-+..+...|+++.|+++.+++....|. +-.+|..|+..|...|+++.|+-.++.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3444456667778888888888888877666 77889999999999999999988887764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.06 E-value=1.1 Score=46.79 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=44.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 511 LDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEM 564 (711)
Q Consensus 511 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 564 (711)
.+.+...|+++-|+++-++.....|.+..+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344566788888888888888888888888888888888888888888877766
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.16 E-value=1.5 Score=33.64 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLE---SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE 601 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (711)
+++.+-..+.+++.+.++.+ +++.+++++.+.+.......+-.+.-++.+.|++++|++..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555555555555432 4555555555543212233444455556666666666666666665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.02 E-value=3.5 Score=31.66 Aligned_cols=71 Identities=14% Similarity=-0.143 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 604 CTFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
-.|+..+-..+..++.+..+ ...++.+++.+.+.+ |. ...+-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 35677777777777777665 457888888888753 42 45667778889999999999999999988 78864
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=1.5 Score=42.09 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=68.8
Q ss_pred CCchHhHHHHHHHHH---hcCChHHHHHHHHHHhHc--CCC-CCHhhHHHHHHHHHccCCHHHH-HHHHHHHHHcCCCch
Q 005161 12 KLNFQLFNTLIYACN---KRGCVELGAKWFHMMLEC--DVQ-PNVATFGMLMGLYKKSWNVEEA-EFAFNQMRKLGLVCE 84 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~---~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~ 84 (711)
..|...|..++.... ..|+...|...++.++.. |.. ++... +.+-.+ ..-++... .
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~------~ 171 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK------V 171 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH------H
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH------H
Confidence 345666666665433 457888888888888764 211 21110 111111 11111110 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE-----AGFSPNIVAYN 158 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 158 (711)
.+...++..+...|++.+|...++.+....+. +...+..+|.++.+.|+..+|.+.|+.+.+ .|++|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 13444555666666666666666666554433 555666666666666666666666666543 36666655443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.59 E-value=3.2 Score=33.37 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLI 110 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (711)
++..++.++...|+|..|...|++.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555555555555555555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.45 E-value=2.7 Score=33.79 Aligned_cols=143 Identities=8% Similarity=-0.050 Sum_probs=76.6
Q ss_pred hhcCCCCc--hHhHHHHHHHHHhcCChHHHHHHHHHHhHcC-CCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 7 MSLGAKLN--FQLFNTLIYACNKRGCVELGAKWFHMMLECD-VQPNV-------ATFGMLMGLYKKSWNVEEAEFAFNQM 76 (711)
Q Consensus 7 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 76 (711)
+++|.-|. -+.+-.-++.+...|.++.|.-+...++... ..|+. .++..+.+++...|++..|...|+.+
T Consensus 10 ~~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 10 HSSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 36677665 4556667788999999999999888876542 23332 25566788889999999999999997
Q ss_pred HHcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005161 77 RKLGL---VCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPN 153 (711)
Q Consensus 77 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (711)
..... ....+...+. . ...... ......+.+..-.+..+|.+.+++++|+.+++.+... ..+
T Consensus 90 Lq~~k~l~k~~s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt 154 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRT 154 (167)
T ss_dssp HHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCC
T ss_pred HHHHHHHhcCCCcccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcC
Confidence 54221 1111111110 0 000000 0011123344445677777888888888887776544 234
Q ss_pred HHHHHHHHHHh
Q 005161 154 IVAYNTLMTGY 164 (711)
Q Consensus 154 ~~~~~~l~~~~ 164 (711)
+.+--.|.+.|
T Consensus 155 ~kvnm~LakLy 165 (167)
T 3ffl_A 155 PKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 44444444433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.84 E-value=16 Score=35.81 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHhHc-----CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH----hcC
Q 005161 28 RGCVELGAKWFHMMLEC-----DVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT----RLS 98 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 98 (711)
.|++.+|++-+..+.+. +..........++..|...|+++...+.+..+.........+...+++.+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777655532 233456667778888889999998888777766555444444445544332 222
Q ss_pred CHHH--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHhh
Q 005161 99 LYEK--AEEVIRLIRE--DK-VVP---NLENWLVMLNAYSQQGKLEEAELVLVSMREA--GFSP---NIVAYNTLMTGYG 165 (711)
Q Consensus 99 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~ 165 (711)
..+. -..+.+.... .| ... .......+...+...|++.+|.++++.+... +... -...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1122221111 11 111 1122345667777788888888888877642 1111 1345566667777
Q ss_pred ccCChHHHHHHHHHHHh----cCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 166 KVSNMEAAQRLFLSIKD----VGLEPD--ETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 166 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
..+++.+|..++.++.. ....|+ ...+...+..+...++|.+|...|.++-.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77888888777776532 111122 12345556666667777777766665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.63 E-value=6.1 Score=30.77 Aligned_cols=70 Identities=14% Similarity=-0.139 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCC-C-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 605 TFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRP-D-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
.|+..+-..+..++.+..+ ..+++.+++.+... .| + ....-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 5677777777777777764 45788888888774 34 2 45566677889999999999999999998 78864
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.35 E-value=4.1 Score=29.27 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+..+-++.+....+.|++....+.+.+|.+.+|+.-|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555566666666666666666666666666666555
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.96 E-value=5 Score=28.85 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 005161 485 IDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL 535 (711)
Q Consensus 485 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 535 (711)
.-+..+-+..+....+.|++....+.+.+|-+.+++.-|.++++.++.+..
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~ 76 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 76 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 334444444555555555555555555555555555555555555554433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.63 E-value=14 Score=33.70 Aligned_cols=163 Identities=9% Similarity=0.033 Sum_probs=79.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHH----HHHHHHhcCCCCChhhHHHHHHHH
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSY----LYYKILKSGITWNQELYDCVINCC 479 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~ 479 (711)
+..-|.+.+++++|++++..-.. .+.+.|+...|.+ +.+.+.+.+.+++......++..+
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33346666777777776654311 1233344333333 334444556666666666666555
Q ss_pred HccCCHH-HHHHHHHHHH----hCC--CCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc-
Q 005161 480 ARALPID-ELSRVFDEML----QHG--FTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQN- 551 (711)
Q Consensus 480 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 551 (711)
......+ .=.++.+.++ +.| -.-++.....+...|.+.|++.+|+..|-... ..++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHHHhc
Confidence 4432111 1122333332 221 12355666677777888888888877664110 01344444444433332
Q ss_pred --CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 552 --KNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600 (711)
Q Consensus 552 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (711)
|...++--++. . .+--|.-.|+...|..+++...
T Consensus 180 ~~~~~~e~dlf~~--------------R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTVAEFFS--------------R-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHHHHHHH--------------H-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHH--------------H-HHHHHHHhcCHHHHHHHHHHHH
Confidence 33322211111 1 1223456688888888887764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.83 E-value=13 Score=41.91 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=32.0
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
.++..+.+.+.++.+.++..-.. .+....-.+..++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555666666655443322 23344455667778888888888888765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=3.3 Score=39.80 Aligned_cols=67 Identities=7% Similarity=-0.062 Sum_probs=38.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhh
Q 005161 509 VMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD-----GFSVSLEA 575 (711)
Q Consensus 509 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 575 (711)
.++..+...|+++++...+..+....|-+...+..++.++...|+..+|++.|+.+.+. |+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455555666666666666666665556666666666666666666666666554332 55555443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=86.86 E-value=17 Score=37.34 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 005161 160 LMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR 201 (711)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 201 (711)
++-.|.++|++++|.++.++.... +..-...+...+..|+.
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 445566778888887777655431 11111345555555553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.86 E-value=45 Score=37.52 Aligned_cols=57 Identities=7% Similarity=0.065 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
.....++..+...+.++.+.++..-. . .+......+...+...|++++|.+.|.+..
T Consensus 813 ~~~~~l~~~l~~~~~~~~~~~l~~~~-~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 813 DLVTELVEKLFLFKQYNACMQLIGWL-N----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp CHHHHHHHHHHHHSCTTHHHHHHHHS-C----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhc-c----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45556777777888887776654322 2 144455667888899999999999998753
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.84 E-value=4.3 Score=35.76 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=43.8
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC 83 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 83 (711)
..+.+.|++++|+.....-++.. +.|......|+..||-.|+++.|.+-++.+.+.+|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45567777777777777777765 5667777777777777788888877777777777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.26 E-value=11 Score=28.88 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 486 DELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTI 544 (711)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 544 (711)
-+..+-++.+....+.|++......+.+|-+.+++.-|.++|+-++.+..+...+|..+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 34444445555555556666665556666666666666666655555443333334333
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.19 E-value=8 Score=29.58 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 005161 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLI 650 (711)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 650 (711)
+..+-++.+....+.|++....+.+.+|.+.+|+.-|.++|+-++.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555556677777777777777777777777777666653 233344455444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.81 E-value=27 Score=32.20 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=43.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI 615 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (711)
-++.....+...|.+.+++.+|...|- .|-.++...+..++.-+...+... .++...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH
Confidence 477777888888888888888777662 232333345543333332222111 11222222222
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 005161 616 DIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 616 ~~~~~~g~~~~A~~~~~~~~~ 636 (711)
-|...+++..|..+++...+
T Consensus 196 -~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHH
Confidence 34456788888776666553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.25 E-value=5.1 Score=35.32 Aligned_cols=56 Identities=14% Similarity=-0.054 Sum_probs=44.3
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+.+.|++++|++....-.+.+|.+......+++.+|-.|+++.|.+-++...+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34567888888888888888888888888888888888888888888887776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.11 E-value=15 Score=35.85 Aligned_cols=98 Identities=9% Similarity=-0.069 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH---
Q 005161 539 ISYNTIIAAYGQNKNLESMSSTVQEMQFDG--FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET-SCTFDHYTYN--- 612 (711)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--- 612 (711)
.++..++..|.+.|+++.|.+.+.++.... ...-...+...++.+...+++..+...++++... .-.++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 355667777777777777777777766542 2222345555666666677777777777666431 0112222111
Q ss_pred -HHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 613 -IMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 613 -~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
.-+..+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223445666666666655544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.97 E-value=12 Score=31.34 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005161 624 INEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676 (711)
Q Consensus 624 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 676 (711)
..++..+|..|...|+--. ...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544444333 3344444444445555555555555544444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 711 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 13/230 (5%)
Query: 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMG-LYKKSWNVEEAEFA 72
++ L N +G + L F + D PN + +G + K++ + A A
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 73 FNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL-ENWLVMLNAYSQ 131
+ + L + + +Y L + A + R E + P+ + + + NA +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKE 283
Query: 132 QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE-T 190
+G + EAE + + + N L + N+E A RL+ K + + P+
Sbjct: 284 KGSVAEAE-DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFAA 340
Query: 191 TYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYED 239
+ ++ + G +EA +YK + + P A + N + +D
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYK--EAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 9e-05
Identities = 28/237 (11%), Positives = 72/237 (30%), Gaps = 5/237 (2%)
Query: 37 WFHMMLECDVQPNVATFGMLMGL-YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95
+ + QPN A +G + + A F + L AY + +
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIV 155
++++A + + Y +QG ++ A E
Sbjct: 215 EARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPD 272
Query: 156 AYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215
AY L + ++ A+ + + + + ++ GN EA Y++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA 331
Query: 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAG 272
+ + A+ L ++ + + A+ + + + + + ++
Sbjct: 332 LEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 711 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.38 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.24 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.54 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.34 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.1 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.0 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.78 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.37 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.25 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.53 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.13 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.39 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.36 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.71 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.31 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.95 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.2e-22 Score=194.95 Aligned_cols=383 Identities=14% Similarity=0.084 Sum_probs=228.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
+...+.+.|++++|.+.|+++++.. +.+...+..+..+|.+.|++++|...|+++.+.+|....+|..++.+|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3455677788888888888887764 445667777777788888888888888888888877777888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
++|+..+.......+. +..............+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 8888888877765544 33344444444445555555555555544443 233444444555556667777777777666
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhH
Q 005161 181 KDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSI 260 (711)
Q Consensus 181 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 260 (711)
....+ .+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++......+.....
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 239 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence 55432 3445566666677777777777777777666421 234556666666667777777777776666666555555
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHc
Q 005161 261 LGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKD 340 (711)
Q Consensus 261 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 340 (711)
+..++..+.+.|++++|...+++++..+|. +..++..+...+...|++++|.+.++......
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------- 301 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC----------------- 301 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-----------------
Confidence 555566666666666666666655555444 44555555555555555555555555444332
Q ss_pred cCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005161 341 SGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAV 420 (711)
Q Consensus 341 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 420 (711)
+.+...+..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|...
T Consensus 302 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 302 -------------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred -------------------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334444444445555555555555555554432 12344445555555555555555555
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHcC
Q 005161 421 LETMEKQKDIEPDAYLYCDMLRIYQQCG 448 (711)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 448 (711)
|++..+.. +.+...|..+..+|.+.|
T Consensus 362 ~~~al~l~--P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 362 YKEAIRIS--PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTC--TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 55543321 123344555555555444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.5e-21 Score=192.13 Aligned_cols=384 Identities=14% Similarity=0.070 Sum_probs=275.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
+...+.+.|++++|.+.|+++.+.+|.+..++..++.+|.+.|++++|+..++++++.++. +..++..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 4455677899999999999999888888888899999999999999999999988876654 567888888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
++|...+....+.. +.+..............+....+............ ................+....+...+.+.
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 99999888888764 33444444455555555555566555555544332 33444444555566677777777777766
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
.... +.+...+..+...+...|+.+.|...+++.++..|.....+..++..+...|++++|...++......+. +..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~- 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV- 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH-
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHH-
Confidence 6542 2244556666677777777777777777777766555555555555555555555555555554443332 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSV 375 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (711)
.+..+...+...|++++|+..|++..+.. +.+..++..+...+..
T Consensus 239 ----------------------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 239 ----------------------------------VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp ----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444455555555556666666555443 3456678888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005161 376 MGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSY 455 (711)
Q Consensus 376 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 455 (711)
.|++++|.+.++...... +.+...+..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|..
T Consensus 284 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999888763 4577888999999999999999999999986543 3456788899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 005161 456 LYYKILKSGITWNQELYDCVINCCARALP 484 (711)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 484 (711)
.|++.++..+ -+...+..+..++.+.||
T Consensus 361 ~~~~al~l~P-~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 361 HYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 9999988643 256788888888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.9e-14 Score=133.50 Aligned_cols=90 Identities=17% Similarity=0.063 Sum_probs=50.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
...+.+.|++++|...|+.+++.. |.+...|..+..++...|+++.|...|.++.+.+|.....|..++.+|...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 334555555555555555555543 3344555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 005161 102 KAEEVIRLIRE 112 (711)
Q Consensus 102 ~a~~~~~~~~~ 112 (711)
+|.+.++.+..
T Consensus 105 ~A~~~~~~~~~ 115 (323)
T d1fcha_ 105 QACEILRDWLR 115 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred ccccchhhHHH
Confidence 55555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.2e-13 Score=130.68 Aligned_cols=261 Identities=13% Similarity=-0.031 Sum_probs=212.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
-.....+.+.|++++|...|+++.+.+|....+|..++.+|...|++++|...|++..+..+. +...+..++..|...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 345667889999999999999999999999999999999999999999999999999887655 6788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC-CCChhhHHHHHHH
Q 005161 134 KLEEAELVLVSMREAGFS--------------PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL-EPDETTYRSMIEG 198 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~ 198 (711)
++++|.+.++........ .+.......+..+...+.+.++...|.+..+..+ ..+...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999999998875321 1111233334445566788899999998876543 2356678888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHH
Q 005161 199 WGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVP 278 (711)
Q Consensus 199 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 278 (711)
+...|++++|...|++...... -+..++..+..++...|++++|...++++++..|.....+..++.++.+.|++++|.
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999987642 256788889999999999999999999999998888899999999999999999999
Q ss_pred HHHHHhhhccC----------CcchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 279 RILKGSLYQHV----------LFNLTSCSILVMAYVKHGLIDDAMKVL 316 (711)
Q Consensus 279 ~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~ 316 (711)
..|++++...| ......|..+-.++...|+.+.+....
T Consensus 261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99998876322 123456777777888888877665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-10 Score=108.33 Aligned_cols=196 Identities=10% Similarity=0.025 Sum_probs=92.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
.+..++.+.+..++|++.++++.+.+|....+|+....++...| ++++|++.++..+..++. +..+|..+...+.+.|
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~ 126 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLR 126 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhc
Confidence 33334444455555555555555555555555555555554443 245555555555444433 4445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC------HHH
Q 005161 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN------YRE 207 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 207 (711)
++++|.+.++.+++.. +.+...|..+...+.+.|++++|...|+++.+.++ .+...|+.+...+.+.+. +++
T Consensus 127 ~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ 204 (315)
T d2h6fa1 127 DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLER 204 (315)
T ss_dssp CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred cHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhhhHH
Confidence 5555555555555543 22444555555555555555555555555554332 233344444333333322 345
Q ss_pred HHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 208 AKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 208 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
|++.+.++.+... .+...|..+...+.. ...+++...++.+.+..+
T Consensus 205 ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 205 EVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCC
Confidence 5555555554421 133444444333322 223444555555544433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.9e-10 Score=106.56 Aligned_cols=215 Identities=10% Similarity=0.018 Sum_probs=173.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
..+++.+-..+.+.+.+++|+++++.+++.. |-+...|+....++...| ++++|+..++.+.+.+|....+|..+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 4555666667888999999999999999986 567778888888888776 59999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC----
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN---- 169 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 169 (711)
+.+.|++++|++.++++.+.++. +..+|..+...+...|++++|.+.++.+++.. +.+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999998766 78899999999999999999999999999986 3477788877776655554
Q ss_pred --hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHhhHHHHHHHH
Q 005161 170 --MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP-NASNLYTLINLH 234 (711)
Q Consensus 170 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 234 (711)
+++|...+.+..+..+ .+...|+.+...+. ....+++.+.++...+....+ +...+..++..+
T Consensus 200 ~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 6789999988887653 46777777766554 445678888888887653332 234444555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.1e-09 Score=102.92 Aligned_cols=299 Identities=14% Similarity=0.040 Sum_probs=159.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc----HHHHHHHH
Q 005161 370 IDTYSVMGMFTEAEKLYLNLKSSGIRLD----LIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD----AYLYCDML 441 (711)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~ 441 (711)
...+...|++++|.+++++..+.....+ ..++..+...+...|++++|+..++.........++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4445666777777777776665422111 124455556666667777777666665432211111 12223333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--Cc-cHHHHHHHHHHHhccC
Q 005161 442 RIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF--TP-NIITLNVMLDIYGKAK 518 (711)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~ 518 (711)
..+...|++..+...+....... ...+. .+ ....+..+...+...|
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------------------------------HhcccchhhHHHHHHHHHHHHHHHhc
Confidence 34444444444444443332110 00110 11 1123333445555666
Q ss_pred cHHHHHHHHHHHHHcCC-----CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--ChhhHHHHHHHHHhcC
Q 005161 519 LFKRVRKLFSMAKKLGL-----VDVISYNTIIAAYGQNKNLESMSSTVQEMQFD----GFSV--SLEAYNSMLDAYGKEG 587 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g 587 (711)
+++.+...+........ .....+......+...++...+...+.+.... +..+ ....+......+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 66666666665554433 12233444455556666666666665554332 1001 1223445556677778
Q ss_pred CHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC-hHhHHHHHHHHhccCCh
Q 005161 588 QMENFKNVLRRMKETSCTF---DHYTYNIMIDIYGEQGWINEVVGVLTELKE----CGLRPD-LCSYNTLIKAYGIAGMV 659 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~ 659 (711)
++++|...++...+..... ....+..+...+...|++++|...++++.. .+..|+ ..++..+..+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 8888888887766432111 223455667778888888888888887764 334444 45677778888888888
Q ss_pred HHHHHHHHHHHH----cCCCC----CcchHHHHHHHHHhcchHHHHHH
Q 005161 660 EDAVGLVKEMRE----NGIEP----DKITYTNMITALQRNDKFLEAIK 699 (711)
Q Consensus 660 ~~A~~~~~~~~~----~~~~p----~~~~~~~l~~~~~~~~~~~~A~~ 699 (711)
++|.+.+++..+ .|... ....+..++..+...++.+++..
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 888888887754 12211 11234445555666666666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=2.9e-11 Score=114.28 Aligned_cols=261 Identities=8% Similarity=-0.043 Sum_probs=141.8
Q ss_pred ChHHHHHHHHHHhHcCCCCCHhhHHHHHHHH---H-------ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 30 CVELGAKWFHMMLECDVQPNVATFGMLMGLY---K-------KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL 99 (711)
Q Consensus 30 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (711)
..++|.++++.+++.. |-+...|+..-..+ . ..|.+++|+..++.+.+.+|.+..+|..+..++...++
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence 3467777777777654 22333443322221 1 23346677777777777777777777776666666554
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHH
Q 005161 100 --YEKAEEVIRLIREDKVVPNLENWL-VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRL 176 (711)
Q Consensus 100 --~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (711)
+++|...++.+...++. +...+. .....+...+.+++|...++.+++.. +.+...|+.+..++.+.|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66777777777665543 344433 33455556677777777777777664 33666677777777777776666544
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 177 FLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
++...+.. |+ .......+...+..+++...+....... .++...+..+...+...++.++|...+.+..+..|.
T Consensus 201 ~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 43333210 11 1112233344455555666666555442 122333344444455555666666666655555544
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHH
Q 005161 257 HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300 (711)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 300 (711)
....+..++..+...|++++|...++.++..+|. +...|..+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~ 317 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLR 317 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHH
Confidence 4445555555555555555555555555554433 333444333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=5.4e-11 Score=112.38 Aligned_cols=258 Identities=7% Similarity=-0.075 Sum_probs=149.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----------cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR----------LSLYEKAEEVIRLIREDKVVPNLENWLVM 125 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (711)
++...-+.+..++|+++++++.+.+|....+|+.....+.. .|++++|+..++.+...++. +...|..+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~ 113 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 113 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHh
Confidence 33333333445899999999999999888887665544333 34477888888888776655 66666666
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 005161 126 LNAYSQQG--KLEEAELVLVSMREAGFSPNIVAYN-TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA 202 (711)
Q Consensus 126 ~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 202 (711)
..++...+ ++++|...++.+.+..+ ++...+. .+...+...+.++.|...++.+.+.++ -+...|+.+...+.+.
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQL 191 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHH
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 66666654 47788888888877642 3455443 344566677888888888888777654 4666777777777788
Q ss_pred CCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 005161 203 GNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILK 282 (711)
Q Consensus 203 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 282 (711)
|++++|...+...... .|+. ......+...+..+.+...+.......+....
T Consensus 192 ~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~----------------------- 243 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF----------------------- 243 (334)
T ss_dssp SCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS-----------------------
T ss_pred cCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhh-----------------------
Confidence 8777665554433332 1111 11122223334444444555554444443333
Q ss_pred HhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhc
Q 005161 283 GSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHIC 357 (711)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 357 (711)
.+..++..+...|+..+|...+.+....++. +...+..+...+...|+.++|++.++...+.
T Consensus 244 ------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 244 ------------RCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp ------------SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3333444444445555555555544443322 2334444555555555555555555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=2e-09 Score=99.78 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHhcC--------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 68 EAEFAFNQMRKLGLVCESAYSAMITIYTRLS--------------LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 68 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
.+..+|+++....|.....|...+..+...+ ..++|..+|++..+.....+...|...+..+.+.|
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~ 113 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 3445566666555555555555444332221 22344444444443222223333344444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
+++.|..+++.+++........+|...+..+.+.|+++.|+++|++..+
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~ 162 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444444444444432222223344444444444444444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.7e-09 Score=101.12 Aligned_cols=229 Identities=10% Similarity=0.017 Sum_probs=106.3
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hhHHHHHHH
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ESAYSAMIT 92 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~ 92 (711)
..+...|++++|.++++..++.....+ ...+..+..++...|++++|...|+.+.+..+.. ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 445566777777777766666432111 1234445556666667777766666655432211 234455556
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHH
Q 005161 93 IYTRLSLYEKAEEVIRLIRED----KVV--PN-LENWLVMLNAYSQQGKLEEAELVLVSMREAGF----SPNIVAYNTLM 161 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 161 (711)
.+...|++..+...+...... ... +. ...+..+...+...|+++.+...+........ ......+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 666666666666666554321 111 11 12333444555556666666666555554311 11222333334
Q ss_pred HHhhccCChHHHHHHHHHHHhcC----CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HhhHHHHHH
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVG----LEP--DETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN---ASNLYTLIN 232 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 232 (711)
..+...+++..+...+.+..... ..+ ....+..+...+...|++++|...+++........+ ...+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 44445555555555554433210 000 011233334444455555555555554443321111 122333344
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 005161 233 LHAKYEDEEGAVNTLDDML 251 (711)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~ 251 (711)
++...|++++|...++.+.
T Consensus 260 ~~~~~g~~~~A~~~~~~al 278 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELN 278 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444555555554444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.7e-09 Score=100.28 Aligned_cols=218 Identities=10% Similarity=-0.014 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQ--------------QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
+.+..+|++++...+. ++..|...+.-+.+ .+..++|..++++.++...+.+...|...+....+
T Consensus 33 ~Rv~~vyerAl~~~~~-~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3455566666554322 44555544443322 23356777888887765445566677777777778
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHH-HHHcCCCHHHHHH
Q 005161 167 VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLIN-LHAKYEDEEGAVN 245 (711)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~ 245 (711)
.|+++.|..+|+++.+..+......|...+....+.|+++.|.++|+++...+.. +...|..... .+...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence 8888888888888776543333446777777777888888888888887765432 2233333332 2344577777888
Q ss_pred HHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCC-c--chhHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 246 TLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVL-F--NLTSCSILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
+++.+++..+....++...+..+...|+++.|..+|++++...+. | ....|...+..-...|+.+.+.++++++.
T Consensus 191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887777776666666666666666666666666666666554332 1 12355555555555666666666655543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=5.1e-09 Score=94.50 Aligned_cols=219 Identities=12% Similarity=-0.010 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHhHcCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 31 VELGAKWFHMMLECDVQP---NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVI 107 (711)
Q Consensus 31 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 107 (711)
.+.++..+++.+...... ...+|..+..+|.+.|++++|...|+++.+.+|....+|+.++.+|.+.|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 445555666666542111 22355666778888899999999999999988888888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC
Q 005161 108 RLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP 187 (711)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (711)
+++.+.++. +..++..+..++...|++++|...++..++.. +.+......+...+.+.+..+.+..+........ +
T Consensus 95 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 170 (259)
T d1xnfa_ 95 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--K 170 (259)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--C
T ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--h
Confidence 988886654 56677788888888899999999998888764 2344444444444455555555555555554421 2
Q ss_pred ChhhHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 188 DETTYRSMIEGWGRAGN----YREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 188 ~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
+...++ ++..+..... .+.+...+...... .|+ ..++..+...+...|++++|...++..+...|.
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 222222 2222222111 11111111111111 111 234455566666667777777777766665544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.6e-09 Score=97.96 Aligned_cols=198 Identities=14% Similarity=-0.011 Sum_probs=143.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
..+|..+-..|.+.|++++|...|+++++.. +.+..+|..+..+|.+.|++++|...|+++.+.+|....++..++.+|
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence 4466677788999999999999999999975 567889999999999999999999999999999999899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----Ch
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS----NM 170 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~ 170 (711)
...|++++|.+.|+...+..+. +......+...+.+.+..+.+..+........ ++...++. +..+.... ..
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhhH-HHHHHHHHHHHHHH
Confidence 9999999999999999886644 44444444455556666666666666655542 23223332 22222222 22
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
+.+...+....... +....+|..+...+...|++++|...|++....
T Consensus 192 ~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 192 ERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22222222211110 012345777889999999999999999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.2e-07 Score=78.14 Aligned_cols=125 Identities=15% Similarity=0.025 Sum_probs=100.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
...+...|+++.|++.|+.+ .+|+..+|..+..+|...|++++|++.|++..+.+|....+|..+..+|.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 45677899999999999875 35778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 102 KAEEVIRLIREDKVV--------------P-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGF 150 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 150 (711)
+|+..|++.+..... + ...++..+..++.+.|++++|.+.+....+..+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999987653211 0 123455566677777788887777777776543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.8e-07 Score=71.16 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=51.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
-..+...|++++|+..|..+++.. +.+...|..+..+|.+.|++++|+..+..+.+.+|....+|..++.++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 344555555555555555555543 3444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCC
Q 005161 102 KAEEVIRLIREDK 114 (711)
Q Consensus 102 ~a~~~~~~~~~~~ 114 (711)
+|+..|+...+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 5555555555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.4e-07 Score=69.57 Aligned_cols=105 Identities=17% Similarity=0.003 Sum_probs=86.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (711)
.-...+.+.|++++|...|..+.+.+|....+|..+..+|...|++++|+..++.....++. +...|..+..++...|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 34566778899999999999999999988889999999999999999999999998887765 77888888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 135 LEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
+++|...++..++.. +.++..+..+.
T Consensus 87 ~~~A~~~~~~a~~~~-p~~~~~~~~l~ 112 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE-ANNPQLKEGLQ 112 (117)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 999999999998864 22444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4.4e-07 Score=73.81 Aligned_cols=92 Identities=14% Similarity=0.015 Sum_probs=54.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
-..|.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|...|+++.+.+|....+|..++.+|...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345556666666666666666554 3455555555556666666666666666666666655556666666666666666
Q ss_pred HHHHHHHHHHhCC
Q 005161 102 KAEEVIRLIREDK 114 (711)
Q Consensus 102 ~a~~~~~~~~~~~ 114 (711)
+|...+++....+
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 6666666655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.4e-06 Score=73.08 Aligned_cols=123 Identities=14% Similarity=-0.041 Sum_probs=82.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (711)
...+...|+++.|++.|..+ .+.+..+|..++.+|...|++++|++.|++.++.++. +...|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 34456778888888887754 3334567778888888888888888888888776655 5677777888888888888
Q ss_pred HHHHHHHHHHHcCCCC---------------CHHHHHHHHHHhhccCChHHHHHHHHHHHhc
Q 005161 137 EAELVLVSMREAGFSP---------------NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV 183 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (711)
+|...|++.+...... ...++..+..++.+.|++++|.+.|+...+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888776531110 0133444555555666666666666655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=1.1e-06 Score=79.91 Aligned_cols=124 Identities=6% Similarity=-0.076 Sum_probs=51.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCC---C---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHH
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGL---V---CESAYSAMITIYTRLSLYEKAEEVIRLIRED----K-VVPNLENWLVMLN 127 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~ 127 (711)
+|...|++++|.+.|.++.+... . ...+|..++.+|.+.|++++|.+.++..... + ......++..+..
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 34444555555555544433210 0 0234444555555555555555555443321 0 0001122333333
Q ss_pred HHHh-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 128 AYSQ-QGKLEEAELVLVSMREA----GFSP-NIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 128 ~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
.|.. .|++++|.+.+++..+. +-++ ...++..++..+...|++++|...|+++..
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 3322 35555555555444321 1000 122344445555555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=7.7e-07 Score=72.29 Aligned_cols=104 Identities=15% Similarity=0.008 Sum_probs=81.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (711)
.....|.+.|++++|...|+++.+.+|.....|..++.+|...|++++|...|+.+++.++. +..+|..++.++...|+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 34556778888888888888888888888888888888888888888888888888876654 66778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005161 135 LEEAELVLVSMREAGFSPNIVAYNTL 160 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (711)
+++|...+++..+.. +.+...+..+
T Consensus 94 ~~eA~~~~~~a~~~~-p~~~~~~~~l 118 (159)
T d1a17a_ 94 FRAALRDYETVVKVK-PHDKDAKMKY 118 (159)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 888888888888864 2244444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=4.6e-07 Score=82.54 Aligned_cols=195 Identities=11% Similarity=0.010 Sum_probs=102.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHH
Q 005161 91 ITIYTRLSLYEKAEEVIRLIRED----KVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGF-----SPNIVAYNTL 160 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 160 (711)
+..|...|++++|.+.|.+..+. +..+ -..+|..+..+|.+.|++++|...+++..+... .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45566677777777777665442 1111 124566667777777777777777766554210 1113344455
Q ss_pred HHHhh-ccCChHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc------HhhHH
Q 005161 161 MTGYG-KVSNMEAAQRLFLSIKDV----GLEP-DETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN------ASNLY 228 (711)
Q Consensus 161 ~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~ 228 (711)
...|. ..|++++|.+.|++..+. +-.+ -..++..+...+...|++++|+..|+++........ ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55553 347777777777665431 1111 123456666777777777777777777665421111 11223
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCh-----hHHHHHHHHHHhc--CCCCcHHHHHHHhh
Q 005161 229 TLINLHAKYEDEEGAVNTLDDMLNMGCQHS-----SILGTLLQAYEKA--GRTDNVPRILKGSL 285 (711)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 285 (711)
..+..+...|+++.|...+++..+..+... .....++.++... +.+++|...|+.+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344455566777777777777666554322 2344455544432 23455555554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.54 E-value=3.8e-07 Score=68.64 Aligned_cols=88 Identities=15% Similarity=-0.047 Sum_probs=46.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
...+.+.|++++|...|+++++.. +-+...|..+..++.+.|++++|+..|+++.+.+|....+|..++.+|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 334445555555555555555543 2344555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 005161 102 KAEEVIRLI 110 (711)
Q Consensus 102 ~a~~~~~~~ 110 (711)
+|++.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=6.9e-07 Score=76.34 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=62.7
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
|+...+......|.+.|++++|+..|.++.+.+|....+|..++.+|.+.|++++|+..|+..++.++. +..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence 455555555666666666666666666666666666666666666666666666666666666654433 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005161 128 AYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~ 147 (711)
+|.+.|++++|...|+.+.+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.53 E-value=8.4e-05 Score=66.12 Aligned_cols=225 Identities=7% Similarity=-0.063 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 005161 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCAR----ALPIDELSRVFDEMLQHGFTPNIITLNV 509 (711)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 509 (711)
+..+..+...+...+++++|.++|++..+.| +...+..+...|.. ..+...+...+....+.+.+ .....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhc
Confidence 3445555666666777777777777776665 34444445555543 44666666666666655422 22222
Q ss_pred HHHHHh----ccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005161 510 MLDIYG----KAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAY--GQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAY 583 (711)
Q Consensus 510 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 583 (711)
+...+. ...+.+.|...+......+.+.....-...... ........+...+......+ +...+..+...+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~ 152 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 152 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhh
Confidence 222221 234556666666666555443222221111111 12233444445554444322 333444444444
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc
Q 005161 584 GK----EGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGI 655 (711)
Q Consensus 584 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 655 (711)
.. ..+...+...++...+.| +......+...|.. ..++++|...|++..+.| ++..+..|...|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred ccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence 43 234444555555544432 33333334333332 335555555555555543 23344444444443
Q ss_pred ----cCChHHHHHHHHHHHHcC
Q 005161 656 ----AGMVEDAVGLVKEMRENG 673 (711)
Q Consensus 656 ----~g~~~~A~~~~~~~~~~~ 673 (711)
..+.++|.+.|++..+.|
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCCccCHHHHHHHHHHHHHCc
Confidence 224555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=5.1e-07 Score=77.19 Aligned_cols=99 Identities=10% Similarity=-0.103 Sum_probs=92.5
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
|+...+...-..+...|++++|+..|+.+++.. |.+...|..+..+|.+.|+++.|+..|+.+.+.+|....+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 677788888899999999999999999999986 6688889999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 005161 93 IYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~ 112 (711)
+|...|++++|+..|+.+..
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.52 E-value=3.8e-07 Score=68.64 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=74.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (711)
.....+.+.|++++|...|+++.+.+|....+|..++.++.+.|++++|+..|++..+.++. +..++..+...|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 45566778888888888888888888888888888888888888888888888888877655 67788888888888888
Q ss_pred HHHHHHHHHHHH
Q 005161 135 LEEAELVLVSMR 146 (711)
Q Consensus 135 ~~~a~~~~~~~~ 146 (711)
+++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=0.00044 Score=61.21 Aligned_cols=191 Identities=14% Similarity=0.065 Sum_probs=97.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKK----SWNVEEAEFAFNQMRKLGLVCESAYSAM 90 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l 90 (711)
...+..+-..+.+.+++.+|.++|++..+.| +...+..|..+|.. ..+...|...+......+. ..+...+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~--~~a~~~l 76 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY--SNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc--cchhhcc
Confidence 3445555556666777777777777776654 44555556555554 4466667766666665543 2334444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005161 91 ITIYTR----LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ----QGKLEEAELVLVSMREAGFSPNIVAYNTLMT 162 (711)
Q Consensus 91 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (711)
...+.. .++.+.|...++.....+.. .....+...+.. ......+...+...... .+...+..|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 443332 34566666666666554422 222222222221 23345555555554443 34455555555
Q ss_pred Hhhc----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 005161 163 GYGK----VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR----AGNYREAKWYYKELKHLG 219 (711)
Q Consensus 163 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 219 (711)
.+.. ..+...+..+++...+.| +..+...+...+.. ..++++|..+|++..+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 5443 344555555555555432 33343334333332 345555555555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.1e-06 Score=66.85 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC-hHhHHHHHHH
Q 005161 577 NSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD-LCSYNTLIKA 652 (711)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 652 (711)
..++..+...+++++|.+.|++.+..+ +.++.++..+..++.+.++ +++|+.+++++.+.+..|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888889999999999998864 5677888888888876554 5569999999877432233 3477888999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCcc
Q 005161 653 YGIAGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 653 ~~~~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 9999999999999999998 778754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.9e-06 Score=65.35 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=52.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL---YEKAEEVIRLIREDKVVPN-LENWLVMLNAYSQ 131 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 131 (711)
++..+...+++++|++.|++....+|....++..++.++.+.++ +++|+.+++++...++.|+ ..++..+..+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666666655333 3346666666555443332 1245555566666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 005161 132 QGKLEEAELVLVSMREA 148 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~ 148 (711)
.|++++|.+.|+++++.
T Consensus 85 ~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQT 101 (122)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 66666666666666664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=8.3e-06 Score=66.63 Aligned_cols=98 Identities=12% Similarity=-0.071 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC--------------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPN--------------VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV 82 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 82 (711)
.+...-..+.+.|++++|+..|..+++...... ..+|..+..+|.+.|++++|+..++.+.+.+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 444555678889999999999988886421110 123334445555566666666666666666655
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 83 CESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
+..+|..++.+|...|++++|+..|+..++.+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 55566666666666666666666666555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=0.00084 Score=60.42 Aligned_cols=281 Identities=10% Similarity=0.049 Sum_probs=150.0
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
||..-...+...|.+.|.++.|..+|..+ .-|..++..+.+.++++.|.+.+.+. + ...+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~---~--~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---N--STRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH---T--CHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc---C--CHHHHHHHHH
Confidence 56666667778888999999999999865 34677888889999999998887654 2 3568888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 005161 93 IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEA 172 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (711)
.+.+.....-|. +........+.....++..|-..|.+++...+++...... +.+...++.++..|++.+ .++
T Consensus 78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHH
T ss_pred HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHH
Confidence 888877765542 2223333456666788999999999999999999876542 557778889999888864 344
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCccHhhHHHHHHHHHcCCCHHHHH
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL--------GYKPNASNLYTLINLHAKYEDEEGAV 244 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (711)
..+.+.... +......++..|-+.+.++++.-++.++... ...++..-....+..+.+..+.+...
T Consensus 151 l~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~ 224 (336)
T d1b89a_ 151 MREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 224 (336)
T ss_dssp HHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHH
Confidence 333333321 1122233444455555555555444443221 01122222333444445555554444
Q ss_pred HHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCC
Q 005161 245 NTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDT 324 (711)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 324 (711)
++....++.. ++....++..+... .-...++..+.+.+++.-....++.....+.
T Consensus 225 ~~i~~yL~~~-------------------p~~i~~lL~~v~~~------~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~ 279 (336)
T d1b89a_ 225 RAIQFYLEFK-------------------PLLLNDLLMVLSPR------LDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN 279 (336)
T ss_dssp HHHHHHHHHC-------------------GGGHHHHHHHHGGG------CCHHHHHHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred HHHHHHHHcC-------------------HHHHHHHHHHhccC------CCHHHHHHHHHhcCCcHHHHHHHHHHHHcCh
Confidence 4444433322 12222222211111 0113344555555555555555555544432
Q ss_pred CccHhhHHHHHHHHHccCChhhHH
Q 005161 325 VFEDNLYHLLICSCKDSGHLANAV 348 (711)
Q Consensus 325 ~~~~~~~~~l~~~~~~~~~~~~a~ 348 (711)
....+++...|...++++.-.
T Consensus 280 ---~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 280 ---KSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHH
T ss_pred ---HHHHHHHHHHHhCcchhHHHH
Confidence 235556666666666654433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.6e-05 Score=64.85 Aligned_cols=80 Identities=11% Similarity=-0.042 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYTNMITA 687 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 687 (711)
+|+.+..+|.+.|++++|+..+++.++. .|+ +.+|..++.+|...|++++|+..|+++.+ +.|+ ......+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 5677888899999999999999999984 564 88899999999999999999999999998 7785 4455555555
Q ss_pred HHhcch
Q 005161 688 LQRNDK 693 (711)
Q Consensus 688 ~~~~~~ 693 (711)
..+.+.
T Consensus 140 ~~~~~~ 145 (170)
T d1p5qa1 140 QQRIRR 145 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1e-06 Score=86.89 Aligned_cols=231 Identities=11% Similarity=0.010 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPN-VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLI 110 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (711)
-+|.+.|+++++. +|+ ...+..+..++...|++++| ++++...+|......+. ........+..+.+.++..
T Consensus 3 ~eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 3 LQSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKV--EQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTH--HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhH--HHHHHHHHHHHHHHHHHHh
Confidence 3678888888874 333 34455566667777777765 67777766643323221 1111122355677777776
Q ss_pred HhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCC
Q 005161 111 REDKVVPNLENWLVMLNA--YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD 188 (711)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (711)
.+....++..-....... ....+.++.|...++...+.. +++...+..+...+.+.|+.+.|...++...... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 654433333222222111 222355555555555444432 3355667777788888888888888877765521 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHH
Q 005161 189 ETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAY 268 (711)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (711)
..++..+...+...|++++|...|++..+.. +.+...|+.+...+...|+..+|...|.+.+...++.......+...+
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3456778888888899999999999988863 224578888888899999999999999999888887778888888777
Q ss_pred HhcCCC
Q 005161 269 EKAGRT 274 (711)
Q Consensus 269 ~~~~~~ 274 (711)
.+..+.
T Consensus 231 ~~~~~~ 236 (497)
T d1ya0a1 231 SKALES 236 (497)
T ss_dssp HHHTTS
T ss_pred HHhhhh
Confidence 665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.19 E-value=1.7e-05 Score=63.34 Aligned_cols=98 Identities=11% Similarity=-0.016 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCC----CC-----------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQ----PN-----------VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGL 81 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~----~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 81 (711)
.+..--..+.+.|++.+|+..|..+++.-.. ++ ..+|..+..+|.+.|++++|+..+..+.+.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 4445556788899999999999988864211 11 12334455555566666666666666666666
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 82 VCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+..+|..++.+|...|++++|+..|+...+.+
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666666666666666665544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.6e-05 Score=61.10 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=43.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHHHHHH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-PN-----LENWLVMLNAY 129 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l~~~~ 129 (711)
+...+.+.|++++|+..|.++.+.+|....++..+..+|.+.|++++|++.++.+++.++. +. ..+|..+...+
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554555555555555555555555555554432111 00 12333444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005161 130 SQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~ 147 (711)
...+++++|.+.|+..+.
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 455555555555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=1.6e-05 Score=65.02 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
+......+...|++..|++.|.++++.. + ......... .....++.....+..+..+|.+.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~--~----------~~~~~~~~~-------~~~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--E----------GSRAAAEDA-------DGAKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--H----------HHHHHSCHH-------HHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh--h----------hhhhhhhhH-------HHHHhChhhHHHHHHHHHHHHhh
Confidence 3444556677888888888887776420 0 000000000 00011111233455556666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGY 164 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (711)
|++++|+..++.+++.++. +..+|..+..++.+.|++++|.+.|+..++.. +.+..+...+..+.
T Consensus 91 ~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6666666666666555443 45556666666666666666666666666553 22444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.8e-05 Score=60.81 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch-------hHHHHH
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE-------SAYSAM 90 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l 90 (711)
+..+-..+.+.|++++|++.|..+++.+ +.+...+..+..+|.+.|+++.|...++.+.+.+|... .+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456678999999999999999999986 56788999999999999999999999999887665442 467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
...+...+++++|++.|+......
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC
Confidence 888899999999999999877654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.10 E-value=6.5e-05 Score=61.01 Aligned_cols=99 Identities=13% Similarity=-0.019 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcC---CCCC-----------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECD---VQPN-----------VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGL 81 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~---~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 81 (711)
..+......+.+.|++.+|...|..++..- ...+ ...|..+..+|.+.|++++|+..+..+.+.+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 445566677888888888888888776521 1111 11222334444555555555555555555555
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 82 VCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+..+|..++.+|...|++++|...|+.++..+
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.9e-06 Score=84.96 Aligned_cols=228 Identities=8% Similarity=-0.088 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 67 EEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL-ENWLVMLNAYSQQGKLEEAELVLVSM 145 (711)
Q Consensus 67 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 145 (711)
-+|.+.|+++.+..|....++..+..++...|++++| |++++..+ |+. ...+ +........+..+.+.++..
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~--~e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK--VEQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT--HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh--HHHHHHHHHHHHHHHHHHHh
Confidence 3688999999988888788888899999999999876 67766543 221 1111 11111112245566667766
Q ss_pred HHcCCCCCHHHHHHHH--HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 005161 146 REAGFSPNIVAYNTLM--TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN 223 (711)
Q Consensus 146 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 223 (711)
.+....++..-..... ......+.++.+...++...+..+ ++...+..+...+.+.|+.++|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 6543333322222211 112234556666655554433222 455567777888888899999988887765431 1
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHH
Q 005161 224 ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAY 303 (711)
Q Consensus 224 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (711)
..++..+...+...|++++|...+.++.+..|.....++.++..+...|+..+|...|.+++...+. -..++..|...+
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~~ 230 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence 3467778888889999999999999999998888888888888888888888888888888776543 666777777766
Q ss_pred Hhc
Q 005161 304 VKH 306 (711)
Q Consensus 304 ~~~ 306 (711)
.+.
T Consensus 231 ~~~ 233 (497)
T d1ya0a1 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=3.1e-05 Score=63.21 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHH
Q 005161 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNM 684 (711)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 684 (711)
....|..+..++.+.|++++|+..++++++ +.|+ +.+|..++.+|...|++++|+..|+++.+ +.|+. .....+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l 151 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 344677788899999999999999999998 4565 88999999999999999999999999998 77854 455555
Q ss_pred HHHHHhcchHH
Q 005161 685 ITALQRNDKFL 695 (711)
Q Consensus 685 ~~~~~~~~~~~ 695 (711)
..+..+.....
T Consensus 152 ~~~~~~l~~~~ 162 (169)
T d1ihga1 152 LKVKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=0.0039 Score=55.94 Aligned_cols=14 Identities=7% Similarity=-0.016 Sum_probs=6.2
Q ss_pred hHHHHHHHHHccCC
Q 005161 471 LYDCVINCCARALP 484 (711)
Q Consensus 471 ~~~~l~~~~~~~~~ 484 (711)
+.+++...|...++
T Consensus 282 vn~al~~lyie~~d 295 (336)
T d1b89a_ 282 VNESLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcch
Confidence 44444444444444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=1.2e-05 Score=63.35 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=79.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHH
Q 005161 584 GKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ----------GWINEVVGVLTELKECGLRPD-LCSYNTLIKA 652 (711)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 652 (711)
.+.+.+++|+..++...+.. |.+...+..+..+|... +.+++|+..|++.++ +.|+ ..+|..+..+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHHH
Confidence 44556777777777777652 44555666666665532 445788888888887 4665 7788888888
Q ss_pred HhccC-----------ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 653 YGIAG-----------MVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 653 ~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
|...| .+++|.+.|++..+ +.|+...+...+.. ...|.+.+.+..++|+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~------~~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM------TAKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH------HHTHHHHHHHHHHSSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 87654 36889999999998 88987655543333 3566777777777775
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.00 E-value=8.1e-06 Score=71.65 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=79.6
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKA 103 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (711)
...+.|++++|+..++..++.. +.|...+..+..+|+..|++++|.+.|+.+.+.+|....++..+...+...+..+++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4556788888888888888775 567777788888888888888888888888888877666666666655544444443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 104 EEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..........+..++...+...+..+.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 322211111111122233344455566677888887777777665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=6.9e-05 Score=60.87 Aligned_cols=92 Identities=10% Similarity=-0.008 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITA 687 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 687 (711)
+|..+..+|.+.|++++|+..+++.++. .|+ ..+|..++.+|...|++++|+..|+++.+ +.|+. .....+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhc--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4666778889999999999999999984 454 88899999999999999999999999998 78865 445555555
Q ss_pred HHhcchH-HHHHHHHHHHH
Q 005161 688 LQRNDKF-LEAIKWSLWMK 705 (711)
Q Consensus 688 ~~~~~~~-~~A~~~~~~m~ 705 (711)
....+.. +...+.+..|-
T Consensus 142 ~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 4444433 33445555553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.97 E-value=2.1e-05 Score=61.96 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=53.1
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKS----------WNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
|-+.+.+++|.+.|+.+++.. |.+...+..+..+|... +.+++|...|+++.+.+|....+|..++.+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 345566888888888888875 56667777777666533 4457788888888888888888888888877
Q ss_pred HhcC
Q 005161 95 TRLS 98 (711)
Q Consensus 95 ~~~~ 98 (711)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 6654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.97 E-value=9.9e-05 Score=58.69 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005161 539 ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIY 618 (711)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (711)
..+...+..+.+.|++.+|+..|.+....- +.... .. +... ..... .....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~-----------~~-~~~~--~~~~~----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEE-----------WD-DQIL--LDKKK----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTT-----------CC-CHHH--HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhh-----------hh-hHHH--HHhhh----hHHHHHHhhHHHHH
Confidence 345555666777777777777777766531 10000 00 0000 00000 01234677788899
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 005161 619 GEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
.+.|++++|+..++++++. .|+ ..+|..++.++...|++++|+..|++..+ +.|+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~ 135 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL 135 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH
T ss_pred HHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999984 564 88999999999999999999999999998 778653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=0.0002 Score=58.39 Aligned_cols=131 Identities=11% Similarity=0.038 Sum_probs=75.7
Q ss_pred CCchHhHHHHH---HHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 12 KLNFQLFNTLI---YACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 12 ~~~~~~~~~~l---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
..|...|.... ......|++++|.+.|...+..-..+ .. ......+.+...-..+... ...++.
T Consensus 5 ~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~~---~~~a~~ 71 (179)
T d2ff4a2 5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVED---KVLAHT 71 (179)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHHH---HHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHHH---HHHHHH
Confidence 34566666665 46788999999999999998752111 00 0000000111111111111 123566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE-----AGFSPNIVA 156 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 156 (711)
.++..+...|++++|+..++.++..++. +...|..++.+|.+.|+.++|.+.|+++.+ .|+.|+..+
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 6666777777777777777776665544 566666777777777777777766666533 466666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.83 E-value=0.00038 Score=56.62 Aligned_cols=124 Identities=14% Similarity=0.028 Sum_probs=88.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
........|++++|.+.|.......+.+.... .....-+...-..+.. .....+..++..+.+.|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~---------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD---------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG---------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc---------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 34566788999999999999988654331100 0000111111111111 1234677889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH-----hcCCCCChhhHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK-----DVGLEPDETTYR 193 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 193 (711)
++|...++++++.. +.+...|..++.++.+.|+.++|++.|+++. +.|+.|+..+-.
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 99999999999986 4588999999999999999999999999874 358999876643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.78 E-value=1.7e-05 Score=69.61 Aligned_cols=123 Identities=11% Similarity=-0.031 Sum_probs=74.6
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 139 (711)
..+.|++++|+..++...+.+|.+...+..+...|+..|++++|...++...+..+. +...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 346789999999999999999988899999999999999999999999988876533 2333433333333222222221
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc
Q 005161 140 LVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV 183 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (711)
.-.......+.+++...+......+...|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111011111112222333344455667777777777666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.46 E-value=0.00024 Score=56.63 Aligned_cols=92 Identities=13% Similarity=-0.031 Sum_probs=58.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCC-CCCC----------hHhHHHHHHHHhccCChHHHHHHHHHHHHc-----CCCCC-
Q 005161 615 IDIYGEQGWINEVVGVLTELKECG-LRPD----------LCSYNTLIKAYGIAGMVEDAVGLVKEMREN-----GIEPD- 677 (711)
Q Consensus 615 ~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 677 (711)
...+...|++++|+..|++.++.. -.|+ ..+|+.+..+|...|++++|+..+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 344556677777777777776510 0111 245777777888888888888877776641 12222
Q ss_pred ----cchHHHHHHHHHhcchHHHHHHHHHHHHH
Q 005161 678 ----KITYTNMITALQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 678 ----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 706 (711)
...+..+..+|...|++++|++.+++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456677788888888888888877654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00062 Score=48.43 Aligned_cols=77 Identities=10% Similarity=-0.021 Sum_probs=49.9
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCC-----CCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDV-----QPN-VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
...+-.+-..+.+.|++.+|..+|+++++... .++ ..++..|..++.+.|++++|...++++.+.+|....+++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 33444566677777777777777777765321 111 345666777777777777777777777777777666665
Q ss_pred HHH
Q 005161 89 AMI 91 (711)
Q Consensus 89 ~l~ 91 (711)
.+.
T Consensus 85 Nl~ 87 (95)
T d1tjca_ 85 NLK 87 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0016 Score=46.14 Aligned_cols=68 Identities=13% Similarity=0.002 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 609 YTYNIMIDIYGEQGWINEVVGVLTELKEC-----GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
..+..+...+.+.|++++|...|++.++. ...++ ..+++.+..+|.+.|++++|+..++++++ +.|+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~ 79 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence 33445667777777888887777777652 11222 45677788888888888888888888887 67764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.14 E-value=0.0011 Score=52.71 Aligned_cols=90 Identities=12% Similarity=-0.086 Sum_probs=47.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCC-CC----------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-------Cc
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQ-PN----------VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGL-------VC 83 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~ 83 (711)
...+.+.|++++|++.|++.++.... |+ ...|..+..+|.+.|++++|...++...+..+ ..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777777763211 11 23455555666666666666666655543211 00
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 84 ----ESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 84 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..+++.+..+|...|++++|++.|++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445555555555555555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.53 E-value=0.023 Score=43.07 Aligned_cols=80 Identities=11% Similarity=-0.097 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cchH
Q 005161 623 WINEVVGVLTELKECGLRPDLCSYNTLIKAYGI----AGMVEDAVGLVKEMRENGIEPDKITYTNMITALQR----NDKF 694 (711)
Q Consensus 623 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 694 (711)
+.++|..++++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 4444555554444432 22333333333332 233455555555554432 12223333333333 2345
Q ss_pred HHHHHHHHHHHHhC
Q 005161 695 LEAIKWSLWMKQIG 708 (711)
Q Consensus 695 ~~A~~~~~~m~~~g 708 (711)
++|.+++++..+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.27 E-value=0.11 Score=37.12 Aligned_cols=63 Identities=21% Similarity=0.148 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 005161 437 YCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF 500 (711)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 500 (711)
+..-++.+...|.-++..++++.+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444445555555555555554442 244444555555555555555555555555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.13 E-value=0.08 Score=39.86 Aligned_cols=110 Identities=10% Similarity=-0.051 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHH
Q 005161 553 NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVV 628 (711)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 628 (711)
|+++|++.|++..+.|.+ .....+. .....+.++|...+++..+.| ++.....|...|.. ..|.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 445555555555555421 1111121 123346667777777766654 34444444444433 34677788
Q ss_pred HHHHHHHHCCCCCChHhHHHHHHHHhc----cCChHHHHHHHHHHHHcC
Q 005161 629 GVLTELKECGLRPDLCSYNTLIKAYGI----AGMVEDAVGLVKEMRENG 673 (711)
Q Consensus 629 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 673 (711)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8887777754 34445555555554 356777777777777654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.3 Score=35.26 Aligned_cols=71 Identities=14% Similarity=-0.147 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHCCCCC-C-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 005161 605 TFDHYTYNIMIDIYGEQG---WINEVVGVLTELKECGLRP-D-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
.|+..+-.....++.+.. ++++++.+++++.+. .| + ...+..|..+|.+.|++++|.+.++.+++ +.|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 355556666666666554 466888888888864 34 3 35667788889999999999999999988 788753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.073 Score=38.59 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=50.8
Q ss_pred CCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 48 PNVATFGMLMGLYKKSW---NVEEAEFAFNQMRKLGLVC-ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
+...+.-...-+++++. +++.+..+|+.+.+.+|.. ...+..+..+|.+.|++++|...++.+++..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45555555555555543 5667888888888877655 467888888899999999999999998886644
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.36 E-value=0.89 Score=32.39 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=62.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc-CCC----------------CChhhH
Q 005161 130 SQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV-GLE----------------PDETTY 192 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~----------------~~~~~~ 192 (711)
.-.|..++..+++.+..+. .+..-||..+.-....-+-+...++++.+-+. .+. .+....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~v 89 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHV 89 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHH
Confidence 3457778888888877774 35566666666555556666666666655442 110 122223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
...++.+..+|.-++-.++++.+.+. -+|++..+..+..+|.+.|+..++..++.++-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33344444445544444554444332 23444444444555555555555555554444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.71 E-value=3.9 Score=37.99 Aligned_cols=204 Identities=7% Similarity=-0.085 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHH
Q 005161 448 GMLDKLSYLYYKILKSGITWNQEL---YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVR 524 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 524 (711)
.+.+.+..++.............. ...+.......+..+.+...+......+. +.......+......+++..+.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHH
Confidence 456666666666554332211111 11122222334556666666666655432 3333333444445567777777
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 525 KLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSC 604 (711)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (711)
..+..+...........-=+..++...|+.+.|...|..+... ++ |...+.+ .+.|..-. +.....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~-------~~~~~~ 371 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYE-------LKIDKA 371 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCC-------CCCCCC
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCC-------CCcCCC
Confidence 7776654322223344445667777888888888888877532 22 3322221 12221100 000000
Q ss_pred --CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 605 --TFDHY----TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 605 --~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
.+... .-...+..+...|....|...|..+... .+......++....+.|.++.|+....+..
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00000 0112345567789999999999888753 345566677788889999999988776653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.31 E-value=2 Score=28.86 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+..+-++.+......|++....+.+.+|.+.+|+.-|.++|+-.+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444555666666666666666666666666655554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.96 E-value=2.2 Score=28.65 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 005161 485 IDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLG 534 (711)
Q Consensus 485 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 534 (711)
.-++.+-+..+....+.|++....+.+.+|-+.+++.-|.++++.++.+.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~ 71 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 71 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 33444444555555555555555555555555555555555555555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.95 E-value=13 Score=34.19 Aligned_cols=52 Identities=4% Similarity=-0.246 Sum_probs=32.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 545 IAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRM 599 (711)
Q Consensus 545 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (711)
+..+...|....|...+..+... .+......+.....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34455667777777777766543 23445555666667777777777665554
|