Citrus Sinensis ID: 005167

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710
MASTEGFLTEEQRETLKIATQNAEVLSSSPKSPTSLLSEHYLKVPAGGKAPNVGIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
cccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHcccccccccc
cccccccccHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHcccccccHHHHHHHHHHHHHHcccccHHHHHHccHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHcccccccccccccc
mastegfltEEQRETLKIATQNaevlssspksptsllsehylkvpaggkapnvgIAVRHvrrshsgklvrvkkdgaggkgtwgklldtdveshidrndpnydsgeepyqlvgatisdplDDYKKAVASIIEEYFSTGDVEVAASDLrelgsseyhpYFIKRLVSMAMDRHDKEKEMASVLLSALYadvispdqiRDGFVILLESADDLAVDILDAVDILALFVARAvvddilppaflTRAKktlpaaskgfQVIQTAEKSylsaphhaelverrwggsthiTVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSlgedgrvqqedeKVKRYKEEVVTIIHEYFLSDDIPELIRSLedlgapefnpIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDdvlaplnleeissklppncsgseTVRVARSLIAARHAGERLLRcwgggtgwavEDAKDKIMKLLEEYesggvvseACQCIRdlgmpffnHEVVKKALVMAMEKKNDRMLDLLQECFSeglittnqmtKGFTRIKDglddlaldipnakEKFTFYVEYARKKgwllpafgscvadasplpavat
mastegflteeQRETLKIAtqnaevlssspksptSLLSEHYLKVPAGGKAPNVGIAVrhvrrshsgklvrvkkdgaggkgtwgklldtdveshIDRNdpnydsgeepYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLrelgsseyhPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKktlpaaskgfQVIQTAEKSYLSAPHHAELverrwggsthitVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGedgrvqqedekvkryKEEVVTIIHEYFLSDDIPELIRSLEdlgapefnpIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLeeissklppncsgsETVRVARSLIAARHAGErllrcwgggtgWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGlittnqmtkGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGScvadasplpavat
MASTEGFLTEEQRETLKIATQNAEVlssspksptsllsEHYLKVPAGGKAPNVGIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESaddlavdildavdilalFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPlilkllkeaaeegliSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
****************************************YLKV*****APNVGIAVRHVRR****KLVRVK****GGKGTWGKLLDT*******************YQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDR*****EMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLI*******GFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSL************VKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIS*********SETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVAD*********
*****GF*****************************************************************************************************************DYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSA**HA******WG**THITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEI**A*PLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMK********************EVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERL***WG***GWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFG**************
MASTEGFLTEEQRETLKIATQN*************LLSEHYLKVPAGGKAPNVGIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
****************K**T***************************************************************KLLDTD*ESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLL*A*G**************
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MASTEGFLTEEQRETLKIATQNAEVLSSSPKSPTSLLSEHYLKVPAGGKAPNVGIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query710 2.2.26 [Sep-21-2011]
Q61823469 Programmed cell death pro yes no 0.421 0.637 0.335 2e-32
Q98TX3467 Programmed cell death pro yes no 0.430 0.655 0.314 2e-32
Q9JID1469 Programmed cell death pro yes no 0.421 0.637 0.332 4e-32
Q53EL6469 Programmed cell death pro yes no 0.419 0.635 0.334 5e-32
Q5R8S3469 Programmed cell death pro yes no 0.419 0.635 0.331 3e-31
Q93ZT6780 Eukaryotic translation in no no 0.198 0.180 0.306 6e-08
P79398907 Eukaryotic translation in no no 0.156 0.122 0.333 1e-07
Q5R7J9907 Eukaryotic translation in no no 0.156 0.122 0.333 1e-07
Q62448906 Eukaryotic translation in no no 0.153 0.120 0.297 1e-07
P78344907 Eukaryotic translation in no no 0.156 0.122 0.333 1e-07
>sp|Q61823|PDCD4_MOUSE Programmed cell death protein 4 OS=Mus musculus GN=Pdcd4 PE=1 SV=1 Back     alignment and function desciption
 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 158/313 (50%), Gaps = 14/313 (4%)

Query: 89  DVESHIDRNDPNYDSGEEPYQLVGATISDPLDD--YKKAVASIIEEYFSTGDVEVAASDL 146
           DVE  +D  DPNYD  +E    V  T+  PLD+  ++K +  II+EYF  GD    A  L
Sbjct: 132 DVE-EVDVKDPNYDDDQE--NCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEML 188

Query: 147 RELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESAD 206
           R+L   E         VS+A++     +EM S LLS L   V+S + +   F  LL+   
Sbjct: 189 RDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLP 248

Query: 207 DLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKS--YLSA 264
           +LA+D   A  ++  F+ARAV D IL   ++   K T+       Q     +K+   LS 
Sbjct: 249 ELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCV----QARAALDKATVLLSM 304

Query: 265 PHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVV 323
               +  +  WG G     V  + K+I  LL+EY+ SGD  EA  C++EL V  FHHE+V
Sbjct: 305 SKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELV 364

Query: 324 KRALVLAMEI--RTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARN 381
             A+V+ +E    +A  +IL LLK   +   I+  QM +G+ R+   + D+ LD+P + +
Sbjct: 365 YEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYS 424

Query: 382 LFQSIVPVAISEG 394
           + +  V      G
Sbjct: 425 VLERFVEECFQAG 437
Inhibits translation initiation and cap-dependent translation. May excert its function by hindering the interaction between EIF4A1 and EIF4G. Inhibits the helicase activity of EIF4A. Modulates the activation of JUN kinase. Down-regulates the expression of MAP4K1, thus inhibiting events important in driving invasion, namely, MAPK85 activation and consequent JUN-dependent transcription. May play a role in apoptosis. Tumor suppressor. Inhibits tumor promoter-induced neoplastic transformation. Binds RNA.
Mus musculus (taxid: 10090)
>sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1 Back     alignment and function description
>sp|Q9JID1|PDCD4_RAT Programmed cell death protein 4 OS=Rattus norvegicus GN=Pdcd4 PE=1 SV=2 Back     alignment and function description
>sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4 OS=Homo sapiens GN=PDCD4 PE=1 SV=2 Back     alignment and function description
>sp|Q5R8S3|PDCD4_PONAB Programmed cell death protein 4 OS=Pongo abelii GN=PDCD4 PE=2 SV=1 Back     alignment and function description
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function description
>sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2 Back     alignment and function description
>sp|Q62448|IF4G2_MOUSE Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2 Back     alignment and function description
>sp|P78344|IF4G2_HUMAN Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query710
224119542717 predicted protein [Populus trichocarpa] 0.990 0.980 0.904 0.0
225456800704 PREDICTED: programmed cell death protein 0.990 0.998 0.899 0.0
297733646789 unnamed protein product [Vitis vinifera] 0.978 0.880 0.905 0.0
224133784713 predicted protein [Populus trichocarpa] 1.0 0.995 0.896 0.0
147821420755 hypothetical protein VITISV_010607 [Viti 0.990 0.931 0.838 0.0
255540415710 conserved hypothetical protein [Ricinus 0.990 0.990 0.878 0.0
356513846701 PREDICTED: uncharacterized protein LOC10 0.987 1.0 0.873 0.0
449469592711 PREDICTED: uncharacterized protein LOC10 1.0 0.998 0.843 0.0
356508762705 PREDICTED: uncharacterized protein LOC10 0.987 0.994 0.865 0.0
357477255790 Eukaryotic translation initiation factor 0.981 0.882 0.853 0.0
>gi|224119542|ref|XP_002318100.1| predicted protein [Populus trichocarpa] gi|222858773|gb|EEE96320.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1295 bits (3352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/710 (90%), Positives = 670/710 (94%), Gaps = 7/710 (0%)

Query: 1   MASTEGFLTEEQRETLKIATQNAE-------VLSSSPKSPTSLLSEHYLKVPAGGKAPNV 53
           MA+ EGFLT EQR+ LKIA+QNAE        LSSSPKSP+ L SEH+LKVPA GKA N 
Sbjct: 1   MATGEGFLTGEQRKMLKIASQNAENLSSSPKGLSSSPKSPSQLFSEHHLKVPAAGKATNA 60

Query: 54  GIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGA 113
           GIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTD ESHIDR+DPNYDSGEEPYQLVGA
Sbjct: 61  GIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDGESHIDRSDPNYDSGEEPYQLVGA 120

Query: 114 TISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKE 173
           TISDP+DDYKKAV SIIEEYFSTGDVEVAASDLRELGSSEYH YFIKRLVSMAMDRHDKE
Sbjct: 121 TISDPIDDYKKAVVSIIEEYFSTGDVEVAASDLRELGSSEYHLYFIKRLVSMAMDRHDKE 180

Query: 174 KEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILP 233
           KEMASVLLSALYADVISP QIRDGFVILLESADDLAVDILDAVDILALF+ARAVVDDILP
Sbjct: 181 KEMASVLLSALYADVISPSQIRDGFVILLESADDLAVDILDAVDILALFIARAVVDDILP 240

Query: 234 PAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADL 293
           PAFLTRAKKTLP +SKGFQV+QTAEKSYLSAPHHAELVER+WGGSTHITVEEVKKKIADL
Sbjct: 241 PAFLTRAKKTLPESSKGFQVLQTAEKSYLSAPHHAELVERKWGGSTHITVEEVKKKIADL 300

Query: 294 LREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLI 353
           LREYVESGDA EACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEA+EEGLI
Sbjct: 301 LREYVESGDAVEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEASEEGLI 360

Query: 354 SSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQE 413
           SSSQMAKGFARL ESLDDLALDIPSA++LFQS++P AI+EGWLDASFMKS GEDG+VQ E
Sbjct: 361 SSSQMAKGFARLTESLDDLALDIPSAKSLFQSLIPKAIAEGWLDASFMKSSGEDGQVQAE 420

Query: 414 DEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKE 473
            EKVKR+KEEVVTIIHEYFLSDDIPELIRSLEDLG PE NPIFLKK+ITLAMDRKNREKE
Sbjct: 421 YEKVKRFKEEVVTIIHEYFLSDDIPELIRSLEDLGMPECNPIFLKKLITLAMDRKNREKE 480

Query: 474 MASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPL 533
           MASVLLSALHIEIFST+DIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPL
Sbjct: 481 MASVLLSALHIEIFSTDDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPL 540

Query: 534 NLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEE 593
           NLEEI SKLPPNCSGSETVR+ARSLIAARHAGERLLRCWGGGTGWAVEDAKDKI+KLLEE
Sbjct: 541 NLEEIGSKLPPNCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKILKLLEE 600

Query: 594 YESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQM 653
           YESGGVV EACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQ CF+EGLIT NQM
Sbjct: 601 YESGGVVGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQVCFNEGLITINQM 660

Query: 654 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADAS 703
           TKGF RIKDG+DDLALDIPNA+EKF+FYVEYA+KKGWLL   GS V D S
Sbjct: 661 TKGFNRIKDGMDDLALDIPNAEEKFSFYVEYAQKKGWLLAPLGSSVVDGS 710

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456800|ref|XP_002277813.1| PREDICTED: programmed cell death protein 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733646|emb|CBI14893.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133784|ref|XP_002321660.1| predicted protein [Populus trichocarpa] gi|222868656|gb|EEF05787.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147821420|emb|CAN76898.1| hypothetical protein VITISV_010607 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540415|ref|XP_002511272.1| conserved hypothetical protein [Ricinus communis] gi|223550387|gb|EEF51874.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356513846|ref|XP_003525619.1| PREDICTED: uncharacterized protein LOC100784244 [Glycine max] Back     alignment and taxonomy information
>gi|449469592|ref|XP_004152503.1| PREDICTED: uncharacterized protein LOC101209979 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356508762|ref|XP_003523123.1| PREDICTED: uncharacterized protein LOC100815729 [Glycine max] Back     alignment and taxonomy information
>gi|357477255|ref|XP_003608913.1| Eukaryotic translation initiation factor 4 gamma [Medicago truncatula] gi|355509968|gb|AES91110.1| Eukaryotic translation initiation factor 4 gamma [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query710
TAIR|locus:2126788702 ECIP1 "AT4G24800" [Arabidopsis 0.981 0.992 0.738 6.6e-271
TAIR|locus:2162007702 AT5G63190 "AT5G63190" [Arabido 0.978 0.990 0.719 3.9e-266
TAIR|locus:2101155633 AT3G48390 "AT3G48390" [Arabido 0.849 0.952 0.709 3e-227
TAIR|locus:2199695693 AT1G22730 "AT1G22730" [Arabido 0.861 0.883 0.485 2.8e-146
UNIPROTKB|F1S5L7470 PDCD4 "Uncharacterized protein 0.463 0.7 0.324 6.2e-36
ZFIN|ZDB-GENE-030131-9847470 pdcd4b "programmed cell death 0.485 0.734 0.308 1.4e-34
UNIPROTKB|Q98TX3467 PDCD4 "Programmed cell death p 0.460 0.700 0.326 3e-34
UNIPROTKB|F1NIY3467 PDCD4 "Programmed cell death p 0.460 0.700 0.326 3.8e-34
UNIPROTKB|E2R334471 PDCD4 "Uncharacterized protein 0.459 0.692 0.328 8.2e-34
UNIPROTKB|A4IFD1469 PDCD4 "Uncharacterized protein 0.459 0.695 0.328 1e-33
TAIR|locus:2126788 ECIP1 "AT4G24800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2605 (922.1 bits), Expect = 6.6e-271, P = 6.6e-271
 Identities = 518/701 (73%), Positives = 575/701 (82%)

Query:     5 EGFLTEEQRETLKIATQNAEVXXXXXXXXXXXXXEHYLKVPAGGKAPNVGIAVRHVRRSH 64
             EGFLT++QRE +K+ATQ A+              EH  K   GGKA     AV+H RRSH
Sbjct:     2 EGFLTDQQREMMKVATQTAD-DLPPSQKPHSVLLEHLPKPSGGGKASGASNAVKH-RRSH 59

Query:    65 SGKLVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKK 124
             +G+ +R KKDG GGKG WGKL+DTD + HID NDPNYDSGEEP++LVGAT+SDPLDDYKK
Sbjct:    60 AGRSIRSKKDGGGGKGNWGKLIDTDGDYHIDPNDPNYDSGEEPFELVGATLSDPLDDYKK 119

Query:   125 AVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSAL 184
             A ASII EYFSTGDV+VAA+DL ELGSSEYHPYFIKRLVS+AMDRHDKEKEMASVLLSAL
Sbjct:   120 AAASIINEYFSTGDVDVAAADLIELGSSEYHPYFIKRLVSVAMDRHDKEKEMASVLLSAL 179

Query:   185 YADVISPDQIRDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPAFLTRAKKTL 244
             YADVI+P+QIRDGFV+LLES                 F+ARAVVDDILPPAFL RA K L
Sbjct:   180 YADVINPNQIRDGFVLLLESADDFVVDIPDAVNVLALFLARAVVDDILPPAFLPRAAKAL 239

Query:   245 PAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAF 304
             P  SKG+QV+QTAEKSYLSA HHAELVERRWGG T  TVEEVKKKIAD+L EYVE+G+ +
Sbjct:   240 PITSKGYQVVQTAEKSYLSAAHHAELVERRWGGQTRTTVEEVKKKIADILNEYVETGETY 299

Query:   305 EACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXXXXXXXXXSSSQMAKGFAR 364
             EACRC+RELGVSFFHHEVVKRALV A+E   AE                SSSQM KGF+R
Sbjct:   300 EACRCVRELGVSFFHHEVVKRALVTALENHAAEAPVLKLLNEAASENLISSSQMVKGFSR 359

Query:   365 LEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEV 424
             L ESLDDLALDIPSAR  F  IVP A+S GWLDASF    GE GR Q EDEK+KR+KE++
Sbjct:   360 LRESLDDLALDIPSARTKFGLIVPKAVSGGWLDASFGYPSGECGRQQNEDEKLKRFKEDI 419

Query:   425 VTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHI 484
             VTIIHEYF SDDIPELIRSLEDLGAPE+NPIFLKK+ITLA+DRKN EKEMASVLLS+LHI
Sbjct:   420 VTIIHEYFNSDDIPELIRSLEDLGAPEYNPIFLKKLITLALDRKNHEKEMASVLLSSLHI 479

Query:   485 EIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPP 544
             E+F+TED+ +GFVMLLESAEDTALDILDASNELALFLARAVIDDVLAP NLEEISSKL P
Sbjct:   480 EMFTTEDVADGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPFNLEEISSKLRP 539

Query:   545 NCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEAC 604
             N SG+ETV++ARSLI ARHAGERLLRCWGGG+GWAVEDAKDKI  LLEEYES G+VSEAC
Sbjct:   540 NSSGTETVKMARSLIFARHAGERLLRCWGGGSGWAVEDAKDKISNLLEEYESSGLVSEAC 599

Query:   605 QCIRDLGMPFFNHEVVKKALVMAMEKKNDRM-LDLLQECFSEGLITTNQMTKGFTRIKDG 663
             +CI +LGMPFFNHEVVKKALVM MEKK D+M LDLLQE FSEGLITTNQMTKGFTR+KDG
Sbjct:   600 KCIHELGMPFFNHEVVKKALVMGMEKKKDKMMLDLLQESFSEGLITTNQMTKGFTRVKDG 659

Query:   664 LDDLALDIPNAKEKFTFYVEYARKKGWLLPAF-GSCVADAS 703
             L+DLALDIPNAKEKF  YVEY +K GW+  +F  S   DA+
Sbjct:   660 LEDLALDIPNAKEKFNDYVEYGKKNGWVSSSFLTSLTEDAN 700
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2162007 AT5G63190 "AT5G63190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101155 AT3G48390 "AT3G48390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199695 AT1G22730 "AT1G22730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5L7 PDCD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9847 pdcd4b "programmed cell death 4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q98TX3 PDCD4 "Programmed cell death protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIY3 PDCD4 "Programmed cell death protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R334 PDCD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFD1 PDCD4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120846
hypothetical protein (717 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query710
pfam02847113 pfam02847, MA3, MA3 domain 5e-38
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 4e-35
pfam02847113 pfam02847, MA3, MA3 domain 8e-35
pfam02847113 pfam02847, MA3, MA3 domain 3e-34
pfam02847113 pfam02847, MA3, MA3 domain 9e-30
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 2e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 2e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 3e-28
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information 
 Score =  136 bits (345), Expect = 5e-38
 Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 122 YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLL 181
            KK +  I+EEY S+GD + AA  L ELG    H   +K L+  A++     +EM  VLL
Sbjct: 1   LKKKIFLILEEYLSSGDYDEAARCLLELGLPFQHHEVVKVLLVCALEEKKTYREMYGVLL 60

Query: 182 SALY-ADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILP 233
           S L    +IS  Q   GF  LLES +DL +DI DA   LA FVAR + D ILP
Sbjct: 61  SRLCQFGLISTKQFEKGFSRLLESLEDLELDIPDAWRNLAEFVARLISDGILP 113

Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains. Length = 113
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 710
KOG0403645 consensus Neoplastic transformation suppressor Pdc 100.0
KOG0403645 consensus Neoplastic transformation suppressor Pdc 100.0
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.89
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.88
KOG0401970 consensus Translation initiation factor 4F, riboso 99.11
KOG0401970 consensus Translation initiation factor 4F, riboso 98.99
PLN032181060 maturation of RBCL 1; Provisional 97.76
PLN03077 857 Protein ECB2; Provisional 96.94
PLN03218 1060 maturation of RBCL 1; Provisional 96.86
PLN03077 857 Protein ECB2; Provisional 95.71
PF04774106 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; 95.35
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 95.16
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 93.81
PF04286367 DUF445: Protein of unknown function (DUF445); Inte 88.0
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-156  Score=1238.04  Aligned_cols=621  Identities=73%  Similarity=1.063  Sum_probs=597.8

Q ss_pred             CCCCCcccccccCcCccccccCCCCCCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 005167           71 VKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELG  150 (710)
Q Consensus        71 ~kk~G~ggk~~Wg~~~~~~~~~~lD~~DPNyds~~~~~~~~~~~~~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~  150 (710)
                      .+|-|.|||+|||...+       |.||||||++|++|.++.+++.-..++|+|++..||+|||++||+.-|+..++||+
T Consensus         5 ~~~~~~g~~~~wg~~~d-------~d~dp~~dtge~~~~lv~s~~~~pl~dykk~~~sii~eyfstgdv~vaa~dl~elg   77 (645)
T KOG0403|consen    5 SPKKGEGSKGTWGVLDD-------DDNDPNYDTGEEPYHLVGSPVSDPLSDYKKKAVSIIDEYFSTGDVVVAASDLKELG   77 (645)
T ss_pred             ccccccCCCCccccccC-------CCCCCCCCCCCCcccccCCccCCcHHHHHHHHHHHHHHHccCCCchhhHHHHHHhc
Confidence            35567789999997766       44999999999999999999988999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcC
Q 005167          151 SSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDD  230 (710)
Q Consensus       151 ~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~  230 (710)
                      ..+|||+||+++|++||||+++|+||+|.|||.||..+|+++||..||.+||++.+|+.+|||+|.++||-||||||+|+
T Consensus        78 ~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~ddl~vdipdavnvlalfiaraivdd  157 (645)
T KOG0403|consen   78 SSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESADDLAVDIPDAVNVLALFIARAIVDD  157 (645)
T ss_pred             cccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcccceecCchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005167          231 ILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCI  310 (710)
Q Consensus       231 ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wgg~~~~~~eelkkki~~lL~EYl~s~D~~EA~rcl  310 (710)
                      +|||.|+.+.+..+|.+++|+++++.|+++||++|||.+.++..|||.+.++++|+|+||+.+|.||..+||..|||||+
T Consensus       158 ilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rci  237 (645)
T KOG0403|consen  158 ILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCI  237 (645)
T ss_pred             ccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHH
Q 005167          311 RELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVA  390 (710)
Q Consensus       311 ~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~  390 (710)
                      |+|.+|+||||.|++|++++||....+..+++||+.-...|+||++||.+||.|+.++++|+++|||.|...++.++.++
T Consensus       238 R~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka  317 (645)
T KOG0403|consen  238 RELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKA  317 (645)
T ss_pred             HHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccC
Confidence            99999999999999999999998877789999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCChhhhh-hhccCCCccccchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCh
Q 005167          391 ISEGWLDASFMK-SLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKN  469 (710)
Q Consensus       391 ~~~g~l~~~~~~-~~~~~~~~~~~~~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~~p~~~~~~v~~~i~~alDrk~  469 (710)
                      .+.||++.+..+ .....|+    ......|||.+.+||+|||.|||+.|++++|++||.|++++.|++++|++|||||+
T Consensus       318 ~s~gwl~e~s~k~~s~~~g~----~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~  393 (645)
T KOG0403|consen  318 PSGGWLDENSFKETSVLPGD----SENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKN  393 (645)
T ss_pred             CCCCccchhhhcccccCCCc----chHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccch
Confidence            999999965554 4444443    33489999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHH
Q 005167          470 REKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGS  549 (710)
Q Consensus       470 ~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~  549 (710)
                      +||||+|+|||+||.+++|++|+.+||.+||++++|+.||||+|++.||.||||||+|++|.|.+|+++.+++|+.+.|+
T Consensus       394 ~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~  473 (645)
T KOG0403|consen  394 SEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGR  473 (645)
T ss_pred             hHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccccccccCC-CCcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHh
Q 005167          550 ETVRVARSLIAARHAGERLLRCWGGG-TGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAM  628 (710)
Q Consensus       550 ~~l~~A~~lL~~~h~~~rl~~~Wg~~-~g~~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~al  628 (710)
                      +++++|++||+++|+++|++||||+| +||+|+++|+||.+||+||.++||+.|||+||+||+|||||||+||+||+|+|
T Consensus       474 et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~m  553 (645)
T KOG0403|consen  474 ETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVM  553 (645)
T ss_pred             HHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999998 68999999999999999999999999999999999999999999999999999


Q ss_pred             ccCch--HHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccchHHHHHHHHHHHHHcC------------CCCCc
Q 005167          629 EKKND--RMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG------------WLLPA  694 (710)
Q Consensus       629 E~~~~--~~~~LL~~l~~~~~it~~q~~~Gf~rv~~~ldDi~lDvP~A~~~l~~~v~~~~~~g------------~l~~~  694 (710)
                      |++++  +|++||+.|+.+|+||.+||+|||.||++.|+|++||||+|++.|+.||+.|.++|            |+...
T Consensus       554 Ekk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~~~  633 (645)
T KOG0403|consen  554 EKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIISKQLRDLCPSRLRKR  633 (645)
T ss_pred             HhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchhHHhhhcchhhhccc
Confidence            99987  89999999999999999999999999999999999999999999999999999999            77888


Q ss_pred             cccCccCC
Q 005167          695 FGSCVADA  702 (710)
Q Consensus       695 ~~~~~~~~  702 (710)
                      |..+....
T Consensus       634 F~se~~~~  641 (645)
T KOG0403|consen  634 FVSEGDGG  641 (645)
T ss_pred             cccCCCcc
Confidence            87765543

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PF04774 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; InterPro: IPR006861 This entry includes the HABP4 protein family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1 Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query710
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 1e-28
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 2e-28
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 2e-28
2zu6_B307 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 3e-26
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 9e-14
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 4e-13
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 4e-13
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 5e-13
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 6e-13
2ios_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 1e-11
2iol_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 2e-11
2kzt_A163 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 2e-09
2rg8_B165 Crystal Structure Of Programmed For Cell Death 4 Mi 3e-09
3l6a_A364 Crystal Structure Of The C-Terminal Region Of Human 5e-08
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 148/326 (45%), Gaps = 17/326 (5%)
Query: 78  GKGTWGKLLDT-DVESHIDRNDPNYDSGEEPYQLVGATISDPLDD--YKKAVASIIEEYF 134
           GKG WG      DVE  +D  DPNYD  +E    V  T+  PLD+  ++K +  II+EYF
Sbjct: 9   GKGVWGTPGQVYDVE-EVDVKDPNYDDDQE--NCVYETVVLPLDETAFEKTLTPIIQEYF 65
Query: 135 STGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQI 194
             GD    A  LR+L   E         VS+A++     +EM S LLS L   V+S + +
Sbjct: 66  EHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDV 125
Query: 195 RDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPAFLTRAKKTLPAASKGFQVI 254
              F  LL+                  F+ARAV D IL   ++   K T+       Q  
Sbjct: 126 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCV----QAR 181
Query: 255 QTAEKS--YLSAPHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRCIR 311
              +K+   LS     +  +  WG G     V  + K+I  LL+EY+ SGD  EA  C++
Sbjct: 182 AALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLK 241
Query: 312 ELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXXXXXXXXXSS---SQMAKGFARLEES 368
           EL V  FHHE+V  A+V+ +E  T E                S+    QM +G+ R+   
Sbjct: 242 ELEVPHFHHELVYEAIVMVLE-STGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 300
Query: 369 LDDLALDIPSARNLFQSIVPVAISEG 394
           + D+ LD+P + ++ +  V      G
Sbjct: 301 IPDINLDVPHSYSVLERFVEECFQAG 326
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 307 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 3 Length = 150 Back     alignment and structure
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 1 Length = 150 Back     alignment and structure
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 163 Back     alignment and structure
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97 Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query710
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 1e-108
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 5e-72
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 1e-43
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 3e-18
2zu6_B307 Programmed cell death protein 4; protein-protein c 2e-90
2zu6_B307 Programmed cell death protein 4; protein-protein c 7e-75
2zu6_B307 Programmed cell death protein 4; protein-protein c 6e-44
2zu6_B307 Programmed cell death protein 4; protein-protein c 9e-23
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-49
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 7e-46
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 3e-25
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-20
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 3e-40
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 1e-25
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 7e-23
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 6e-19
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 3e-36
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 3e-30
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 4e-28
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 3e-21
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 7e-36
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 2e-30
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 4e-28
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 8e-22
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 5e-31
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 8e-27
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 1e-23
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 1e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
 Score =  333 bits (854), Expect = e-108
 Identities = 102/342 (29%), Positives = 153/342 (44%), Gaps = 5/342 (1%)

Query: 71  VKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASII 130
                  GKG WG          +D  DPNYD  +E        +      ++K +  II
Sbjct: 2   PLGSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPII 61

Query: 131 EEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVIS 190
           +EYF  GD    A  LR+L   E         VS+A++     +EM S LLS L   V+S
Sbjct: 62  QEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMS 121

Query: 191 PDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKG 250
            + +   F  LL+   +LA+D   A  ++  F+ARAV D IL   ++   K T+      
Sbjct: 122 TNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVD--CVQ 179

Query: 251 FQVIQTAEKSYLSAPHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRC 309
            +         LS     +  +  WG G     V  + K+I  LL+EY+ SGD  EA  C
Sbjct: 180 ARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHC 239

Query: 310 IRELGVSFFHHEVVKRALVLAMEIRT--AEPLILKLLKEAAEEGLISSSQMAKGFARLEE 367
           ++EL V  FHHE+V  A+V+ +E     A  +IL LLK   +   I+  QM +G+ R+  
Sbjct: 240 LKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 299

Query: 368 SLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGR 409
            + D+ LD+P + ++ +  V      G +           GR
Sbjct: 300 EIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGR 341
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query710
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 100.0
2zu6_B307 Programmed cell death protein 4; protein-protein c 100.0
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 100.0
2zu6_B307 Programmed cell death protein 4; protein-protein c 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 100.0
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 100.0
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.97
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.97
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.95
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.94
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.93
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.93
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=3.5e-87  Score=722.95  Aligned_cols=338  Identities=30%  Similarity=0.468  Sum_probs=267.9

Q ss_pred             CCCCCcccccccCcCccccccCCCCCCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 005167           71 VKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELG  150 (710)
Q Consensus        71 ~kk~G~ggk~~Wg~~~~~~~~~~lD~~DPNyds~~~~~~~~~~~~~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~  150 (710)
                      |.|+|+|||||||++++++++..+|++||||||+++++++....+++|++||+|++++||+|||+++|++||+.||+|||
T Consensus         2 ~~~~~~~gk~~wg~~~~~~~~~~~d~~dpnyd~~~~~~~~~~~~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~   81 (358)
T 3eiq_C            2 PLGSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN   81 (358)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCcCCCCcCcCcccCCCccCCCCCCCCCCceeecCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence            67899999999999999888888999999999988887666666889999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcC
Q 005167          151 SSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDD  230 (710)
Q Consensus       151 ~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~  230 (710)
                      .|.|++.||+++|++||||+++||||+|+||++||++++|++||.+||.++|++++|+++|+|+||++||+||||||+||
T Consensus        82 ~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~  161 (358)
T 3eiq_C           82 LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG  161 (358)
T ss_dssp             CCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhhhc-CCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 005167          231 ILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRC  309 (710)
Q Consensus       231 ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wg-g~~~~~~eelkkki~~lL~EYl~s~D~~EA~rc  309 (710)
                      +|||+||.++...+ .++.|+++|++|+ ++|+++||.+|++|+|| |++.++++++++||+++|+|||++||++||++|
T Consensus       162 ~l~~~~l~~~~~~~-~~~~~~~~l~~a~-~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~c  239 (358)
T 3eiq_C          162 ILCNTYIDSYKGTV-DCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHC  239 (358)
T ss_dssp             CSCSSTTGGGC----CCHHHHHHHHHHH-HHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CCCHHHHHHHhhcc-cchHHHHHHHHHH-HHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            99999999987665 4578999999996 89999999999999999 555679999999999999999999999999999


Q ss_pred             HHHhCCCcChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHH
Q 005167          310 IRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIV  387 (710)
Q Consensus       310 l~EL~~P~fhhelV~~ai~~alE~~--~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v  387 (710)
                      |+||++|+|||+||+++|+++||++  .+++++++||++|.++|+||++||.+||.|+++.++||+||||+||.+|++|+
T Consensus       240 i~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v  319 (358)
T 3eiq_C          240 LKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV  319 (358)
T ss_dssp             HHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHH
Confidence            9999999999999999999999985  46789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCChhhhhhhccCCCc
Q 005167          388 PVAISEGWLDASFMKSLGEDGRV  410 (710)
Q Consensus       388 ~~~~~~g~l~~~~~~~~~~~~~~  410 (710)
                      .+|+.+|||+.+|+..+|++|||
T Consensus       320 arai~~g~l~~~f~~~~p~r~rk  342 (358)
T 3eiq_C          320 EECFQAGIISKQLRDLCPSRGRK  342 (358)
T ss_dssp             HHHHHHTSSCHHHHTTCCCC---
T ss_pred             HHHHHCCCCCHHHHHhCcccCCc
Confidence            99999999999999999999998
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 710
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 5e-36
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 7e-32
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 9e-29
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 5e-28
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 3e-35
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 9e-35
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 5e-31
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 1e-30
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 5e-36
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 2/155 (1%)

Query: 120 DDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASV 179
           ++ +K   +IIEEY    D++ A   ++EL S      F++  V   ++R    +E    
Sbjct: 7   EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQ 66

Query: 180 LLSALY-ADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLT 238
           LL  L  A  +S  Q   G   +LE A+D+ +DI      LA  V   + +  +P   L 
Sbjct: 67  LLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELF 126

Query: 239 RAK-KTLPAASKGFQVIQTAEKSYLSAPHHAELVE 272
           R   K L    K   ++         +    ++  
Sbjct: 127 REITKPLRPLGKAASLLLEILGLLCKSMGPKKVGT 161
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query710
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.97
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.96
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.96
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.95
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.9e-32  Score=254.57  Aligned_cols=127  Identities=31%  Similarity=0.534  Sum_probs=121.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC-Cch-HHHHHHHHHHHHcCCCCHHHH
Q 005167          281 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAE-PLILKLLKEAAEEGLISSSQM  358 (710)
Q Consensus       281 ~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~-~~~-~~i~~LL~~L~~~~~is~~Q~  358 (710)
                      +|+++++||++++|+|||++||++||++|++||++|+|||+||+++|+++||++ ..+ +++++||++|..+|+||++||
T Consensus         1 ~pv~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i   80 (129)
T d2nsza1           1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM   80 (129)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            478899999999999999999999999999999999999999999999999987 444 688999999999999999999


Q ss_pred             HHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccC
Q 005167          359 AKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGED  407 (710)
Q Consensus       359 ~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~  407 (710)
                      .+||.|+++.++|+.||+|+||++|++|+++|+.+||+|.+|+..+|+|
T Consensus        81 ~~Gf~~~l~~l~Dl~lDvP~a~~~l~~fi~rav~d~~l~~~~~~~~p~r  129 (129)
T d2nsza1          81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR  129 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC
T ss_pred             HHHHHHHHhhCcHHhhccccHHHHHHHHHHHHHHcCCCCHHHHhhCCCC
Confidence            9999999999999999999999999999999999999999999999875
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure