Citrus Sinensis ID: 005176

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710
MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVASNSSVDENDRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSSSKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI
cccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccHHHcccccHHHcccccccccEEHHcccccHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
ccccccccccccHHHHHcHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHcccccHHccHHHHHccEEEEEcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHcccHHHHHcHHHEHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mdnplsqnpdstwgrffrSAELEKMVDQdlsrlypehgsyfqtpgcqGMLRRILLLWCLrhpefgyrqGMHELLAPLLYVLHVDVERLSqvrnehedhftdkfdglsfhendltynfDFKKFLDSMEDEigshgnsvkvrsvdeldpeIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDAlmvgsqgsvsmadffahshadgsltcLLPVIEASSAMYHLLSVADSSLHSHLVELgvepqyfgLRWLRVLFGREFSLGDLLIIWDEifasdsskvnkdteddagsgfgilssPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLlnfpvninlKKIIGKTKSLQALALdanlssssppfsgvynqnnpmvvrgsslpsesisprtplnvvpdsywegkwrDLHKAeeqrhdssgkqnqTQKKRWLEKVKLRLsrtesdptprtvdngtkhsrSSIRRSLLEDLSkelgfeedsekdgilevstekdqpsveaevqrqdsvnrefactsderyltgnagseesssifsdpaspvsgandnendsekssvasnssvdendrqshtmpespplpvsqtpddivkdsqsnndsleKSQTVRKVLSGKFQWFWkfgrnsageetsekggvaTETKisannesnqsnskgassndgsckssssskgetvdqNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI
mdnplsqnpdstwgRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDhftdkfdglsfheNDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAgsgfgilsspRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSlpsesisprtplnvvpdSYWEGKWRDLHKAeeqrhdssgkqnqtqkkrwlekvklrlsrtesdptprtvdngtkhsrssirrSLLEDLSkelgfeedsekdgilevstekdqpsveaevqrqdsvnrefactsdeRYLTgnagseesssifsdPASPVSGANDNENDSEKSSVAsnssvdendrqshtmpespplpvsqTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFgrnsageetsekggVATETKisannesnqsnskgassndgsckssssskgetvdqNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI
MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKslqalaldanlssssPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNEndsekssvasnssvdendRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGAssndgscksssssKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI
************WGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSM************VRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFA*****************FGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALAL****************************************VVPDSYWEGKW******************************************************************************************************************************************************************************************************KVLSGKFQWFWKFG**********************************************************TLKNLGQSMLEHIQVTFSFCTLICMFENTS*****
MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSH******CLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQA***************************************************************************************************************************************************************************************************************************************************************************************************************************************NLGQSMLEHIQVTFSFCTLICMFENTSL****
*********DSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLH******************KRWLEKVKLRL**********************IRRSLLEDLSKELGFEEDSEKDGILEVS****************SVNREFACTSDERYLT**********************************************************SQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNS***********ATETKISAN****************************VDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI
****LSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQAL*************************************RTPLNVVPDSYWEGKWRDLHKAE******************LEK***************************************L**********************************************************************************************************************************KVLSGKFQWFWKFGR************************************************ETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVASNSSVDENDRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSSSKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICMFENTSLLKNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query710 2.2.26 [Sep-21-2011]
Q92609795 TBC1 domain family member yes no 0.384 0.343 0.301 3e-32
Q80XQ2815 TBC1 domain family member yes no 0.384 0.334 0.292 3e-31
Q54VM31173 TBC1 domain family member yes no 0.457 0.277 0.236 4e-28
Q54TA51016 TBC1 domain family member no no 0.153 0.107 0.318 3e-13
Q9NVG8400 TBC1 domain family member no no 0.149 0.265 0.305 4e-08
Q8R3D1400 TBC1 domain family member no no 0.149 0.265 0.312 3e-07
Q9URY3619 TBC domain-containing pro yes no 0.238 0.273 0.246 2e-06
Q08484637 GTPase-activating protein yes no 0.091 0.102 0.348 8e-05
Q9NU19505 TBC1 domain family member no no 0.123 0.174 0.294 0.0001
Q95LL3505 TBC1 domain family member N/A no 0.123 0.174 0.294 0.0001
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 161/352 (45%), Gaps = 79/352 (22%)

Query: 1   MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 60
           ++NPLSQ+  S W +FF+  EL  M++QD+ R +PE   +FQ    + +L  +L  +   
Sbjct: 138 INNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEM-QFFQQENVRKILTDVLFCYARE 196

Query: 61  HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFK 120
           + +  Y+QGMHELLAP+++VLH                                   D +
Sbjct: 197 NEQLLYKQGMHELLAPIVFVLHC----------------------------------DHQ 222

Query: 121 KFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKF--MEHDA 178
            FL + E    S   S ++++V  L+PE        DAY    +L       F   EHD 
Sbjct: 223 AFLHASE----SAQPSEEMKTV--LNPEYLE----HDAYAVFSQLMETAEPWFSTFEHDG 272

Query: 179 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVE 238
               + LM            FA     G    +  V + +    HLL   D  L+ HL  
Sbjct: 273 QKGKETLMTPIP--------FARPQDLGPTIAI--VTKVNQIQDHLLKKHDIELYMHLNR 322

Query: 239 LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 298
           L + PQ +GLRW+R+LFGREF L DLL++WD +FA              G   G      
Sbjct: 323 LEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFAD-------------GLSLG------ 363

Query: 299 GALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 350
             L+  + V+M+LYIR +L+++ N  TCL  L+++P   ++  +I K   L+
Sbjct: 364 --LVDYIFVAMLLYIRDALISS-NYQTCLGLLMHYPFIGDVHSLILKALFLR 412
May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2 Back     alignment and function description
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1 Back     alignment and function description
>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1 Back     alignment and function description
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 Back     alignment and function description
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1 Back     alignment and function description
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4 Back     alignment and function description
>sp|Q08484|GYP1_YEAST GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3 Back     alignment and function description
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query710
118489839 823 unknown [Populus trichocarpa x Populus d 0.970 0.837 0.700 0.0
255573773 825 conserved hypothetical protein [Ricinus 0.966 0.831 0.692 0.0
224090523804 predicted protein [Populus trichocarpa] 0.954 0.843 0.692 0.0
225470672 830 PREDICTED: uncharacterized protein LOC10 0.966 0.826 0.680 0.0
449461172 830 PREDICTED: uncharacterized protein LOC10 0.959 0.820 0.644 0.0
224144337729 predicted protein [Populus trichocarpa] 0.863 0.840 0.623 0.0
356564825 832 PREDICTED: uncharacterized protein LOC10 0.961 0.820 0.625 0.0
283099385 813 microtubule-associated protein [Nicotian 0.957 0.836 0.620 0.0
357449575 869 TBC1 domain family member-like protein [ 0.957 0.782 0.601 0.0
356550728 823 PREDICTED: uncharacterized protein LOC10 0.950 0.820 0.607 0.0
>gi|118489839|gb|ABK96719.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/695 (70%), Positives = 569/695 (81%), Gaps = 6/695 (0%)

Query: 1   MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 60
           +DNPLSQNPDSTWGRFFR+AELEK +DQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR
Sbjct: 82  IDNPLSQNPDSTWGRFFRNAELEKTLDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 141

Query: 61  HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFK 120
           HPE+GYRQGMHELLAP LYVLH+D E LS+VR ++EDHFTDKFDGL+F ENDLTYNFDFK
Sbjct: 142 HPEYGYRQGMHELLAPFLYVLHIDAEHLSEVRKQYEDHFTDKFDGLAFQENDLTYNFDFK 201

Query: 121 KFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDAYC 180
           KFLDSMEDEIGSHGN+VKV+ ++ELDPEIQT V L+DAYGAEGELGIV+SEKFMEHDAYC
Sbjct: 202 KFLDSMEDEIGSHGNAVKVK-LNELDPEIQTTVLLTDAYGAEGELGIVISEKFMEHDAYC 260

Query: 181 MFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELG 240
           MFDALM GS GSV++ DF++HS A GS + L PVIEAS+A+YHLLSV DSSLHSHLVELG
Sbjct: 261 MFDALMSGSHGSVAVVDFYSHSPAHGSHSGLPPVIEASAALYHLLSVVDSSLHSHLVELG 320

Query: 241 VEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKV-NKDTEDDAGSGFGILSSPRG 299
           VEPQYF LRWLRVLFGREFSL +LL+IWDEIFA+D++ +  K  EDDA SGF I  SPRG
Sbjct: 321 VEPQYFALRWLRVLFGREFSLENLLLIWDEIFAADNNVILEKGAEDDADSGFRIFRSPRG 380

Query: 300 ALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLS 359
           ALI AM+VSM+L++RSSLLATE+ATTCLQRLLNFP NI+L+K+I K KSLQ+LALD N+S
Sbjct: 381 ALIPAMSVSMILHLRSSLLATEHATTCLQRLLNFPENIDLRKLINKAKSLQSLALDTNMS 440

Query: 360 SSSPPFSGVYNQNNPMVVRG--SSLPSESISPRTPLNVVPDSYWEGKWRDLHKAEEQRHD 417
           S SPPF G+YN +  +VVRG  ++L S S+SP+TPLN VPDSYWE KWRDLHK EE +HD
Sbjct: 441 SVSPPFDGIYNHSKSLVVRGHTNALSSGSVSPKTPLNAVPDSYWEEKWRDLHKTEELKHD 500

Query: 418 SSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIRRSLLEDLSKELGFEE 477
             GK   +QKKRW EKV+L LSRTES P P    +G K  +SSIRRSLLEDLS ELG + 
Sbjct: 501 HLGKLKPSQKKRWTEKVRLPLSRTESAPAPVKAGSGKKDQKSSIRRSLLEDLSHELGMDG 560

Query: 478 DSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPAS 537
           D  K    EVS +KD  + E E    DSVN +F C+++ER L+GN+GSEE+SS+FSDP+S
Sbjct: 561 DIGKSDCHEVSGKKDHQTAEVEGGGPDSVNNDFTCSTEERCLSGNSGSEENSSVFSDPSS 620

Query: 538 PVSGANDNENDSEKSSVASNSSVDENDRQSHTMPESPPLPVSQTPDDIVKDSQSNNDSLE 597
            +SG N++ENDSEKSSVASN SVDEND Q+  + E P LPVS  P+ +  +S +NN+   
Sbjct: 621 SLSGGNEHENDSEKSSVASNMSVDENDDQAEALQEDPTLPVSHPPEGVSLNSGTNNEPAG 680

Query: 598 K--SQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSND 655
           K  +    + LSGKFQWFWKFGRN+AGEETSEKG    E     N+ SNQ NS G+SS +
Sbjct: 681 KQVAGPKERKLSGKFQWFWKFGRNTAGEETSEKGSGTFEATKPVNDASNQINSIGSSSVN 740

Query: 656 GSCKSSSSSKGETVDQNVMGTLKNLGQSMLEHIQV 690
           GSC   +SSKGE+VDQNVMGTL+N GQSMLEHIQ+
Sbjct: 741 GSCNPYASSKGESVDQNVMGTLRNFGQSMLEHIQI 775

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573773|ref|XP_002527807.1| conserved hypothetical protein [Ricinus communis] gi|223532803|gb|EEF34579.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224090523|ref|XP_002309012.1| predicted protein [Populus trichocarpa] gi|222854988|gb|EEE92535.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225470672|ref|XP_002269494.1| PREDICTED: uncharacterized protein LOC100250355 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461172|ref|XP_004148316.1| PREDICTED: uncharacterized protein LOC101219111 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224144337|ref|XP_002325266.1| predicted protein [Populus trichocarpa] gi|222866700|gb|EEF03831.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564825|ref|XP_003550648.1| PREDICTED: uncharacterized protein LOC100818700 [Glycine max] Back     alignment and taxonomy information
>gi|283099385|gb|ADB08056.1| microtubule-associated protein [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|357449575|ref|XP_003595064.1| TBC1 domain family member-like protein [Medicago truncatula] gi|355484112|gb|AES65315.1| TBC1 domain family member-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356550728|ref|XP_003543736.1| PREDICTED: uncharacterized protein LOC100816501 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query710
TAIR|locus:2123859828 AT4G29950 [Arabidopsis thalian 0.945 0.810 0.518 2.4e-170
TAIR|locus:2047600840 AT2G19240 [Arabidopsis thalian 0.730 0.617 0.574 6.4e-166
TAIR|locus:2165625737 AT5G57210 [Arabidopsis thalian 0.705 0.679 0.600 7.7e-159
UNIPROTKB|F1LXN2771 Tbc1d5 "Protein Tbc1d5" [Rattu 0.170 0.156 0.352 8.7e-32
RGD|1561626805 Tbc1d5 "TBC1 domain family, me 0.170 0.150 0.352 9.4e-32
UNIPROTKB|E1BRI4788 TBC1D5 "Uncharacterized protei 0.123 0.111 0.404 2.3e-31
MGI|MGI:1919488815 Tbc1d5 "TBC1 domain family, me 0.173 0.150 0.359 9.4e-31
UNIPROTKB|F1N3C5804 TBC1D5 "Uncharacterized protei 0.170 0.150 0.345 1.6e-29
UNIPROTKB|Q92609795 TBC1D5 "TBC1 domain family mem 0.176 0.157 0.349 7.4e-29
UNIPROTKB|F1RS74807 TBC1D5 "Uncharacterized protei 0.176 0.154 0.349 1e-28
TAIR|locus:2123859 AT4G29950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1656 (588.0 bits), Expect = 2.4e-170, P = 2.4e-170
 Identities = 373/720 (51%), Positives = 465/720 (64%)

Query:     1 MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 60
             +DNPLSQNPDSTWGRFFR+AELEK +DQDLSRLYPEH SYFQ PGCQGMLRRILLLWCL+
Sbjct:    78 IDNPLSQNPDSTWGRFFRNAELEKTLDQDLSRLYPEHWSYFQAPGCQGMLRRILLLWCLK 137

Query:    61 HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFK 120
             HPE+GYRQGMHELLAPLLYVLHVDV+RLS+VR  +EDHF D+FDGLSF E D+TYNF+FK
Sbjct:   138 HPEYGYRQGMHELLAPLLYVLHVDVDRLSEVRKSYEDHFIDRFDGLSFEERDITYNFEFK 197

Query:   121 KFL-DSMEDEIGS-HGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSEKFMEHDA 178
             KFL D  +DEIG   GNS K++S+DELDPEIQ+IV+LSDAYGAEGELGIVLSEKFMEHDA
Sbjct:   198 KFLEDFTDDEIGGIQGNSKKIKSLDELDPEIQSIVRLSDAYGAEGELGIVLSEKFMEHDA 257

Query:   179 YCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVE 238
             YCMFDALM G  G V+MA FFA+S A GS T L PV+EAS+A YHLLS  DSSLHSHLVE
Sbjct:   258 YCMFDALMNGVHGCVAMAGFFAYSPASGSHTGLPPVLEASTAFYHLLSFVDSSLHSHLVE 317

Query:   239 LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 298
             LGVEPQYFGLRWLRVLFGREF L DLLI+WDEIF++D++    D +++    + I  SPR
Sbjct:   318 LGVEPQYFGLRWLRVLFGREFLLQDLLIVWDEIFSADNT-TRTDADNNTNQSYKIFDSPR 376

Query:   299 GALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKXXXXXXXXXXX 358
             GALI+ MAVSM+L +RSSLLATENA +CLQRLLNFP  I+++KII K K           
Sbjct:   377 GALISGMAVSMILCLRSSLLATENAASCLQRLLNFPEKIDVRKIIEKAKSLQTLALDDDV 436

Query:   359 XXXXPPFSGVYNQN-NPMV-VRGSSLPSESISPRTPLNVVPDSYWEGKWRDLHKA-EEQR 415
                    +  ++Q+ +P V  R +S PS S SP++PL + P SYWE +WR LHKA EE++
Sbjct:   437 RSSALSINDGFDQSISPAVPARTNSFPSGSTSPKSPLIITPQSYWEDQWRVLHKAAEEEK 496

Query:   416 HDSSGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVD-NGTKHSR-SSIRRSLLEDLSKEL 473
                S  Q   +KK W  +VK RL R ES+PT      NG    + SS+ R+LLED +++L
Sbjct:   497 KSPSPIQ---KKKPWF-RVK-RLFRAESEPTHSAKSPNGKSEVKISSVARNLLEDFNRQL 551

Query:   474 GFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFS 533
                E  E + I  V+ E      ++ ++  + +N +F   ++E  +      E SS +FS
Sbjct:   552 -VSEPVEANPIDVVNNE------DSSIRETEDINTDFETAAEESIVM----EENSSDLFS 600

Query:   534 DPASPVSGANDNEXXXXXXXXXXXXXXXXXXRQSHTMPESPPLPVSQTP--DDIVKDSQS 591
             DP SP+  +N  E                   +  ++ +SP L +S  P  + IV  S+ 
Sbjct:   601 DPNSPLRDSNYIENDSDSSNESNLFPDETVKDRETSVVDSP-LSISSQPSMEFIVSLSKD 659

Query:   592 NNDSLEKSQT-VRKVLSGKFQWFWKFGRNSAGEET----SEKGGV--------------- 631
                S+  S   V    S +F        ++A +++     E+  V               
Sbjct:   660 QETSVVDSPLPVSSQPSIEFPVTQSNDEDNAADKSVANIKERSKVLPGKFQWFWKFGRNV 719

Query:   632 -ATETKISANNESNQSNSKGAXXXXXXXXXXXXXKGETVDQNVMGTLKNLGQSMLEHIQV 690
              A ET+ +    S       +             KG+T DQNVM TLKNLG SMLEHIQV
Sbjct:   720 TAEETRCNGVESSKSDLVCSSESHSLPQASSSGSKGDT-DQNVMNTLKNLGNSMLEHIQV 778
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2047600 AT2G19240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165625 AT5G57210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1LXN2 Tbc1d5 "Protein Tbc1d5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1561626 Tbc1d5 "TBC1 domain family, member 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BRI4 TBC1D5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1919488 Tbc1d5 "TBC1 domain family, member 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N3C5 TBC1D5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q92609 TBC1D5 "TBC1 domain family member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RS74 TBC1D5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000579
hypothetical protein (804 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query710
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 6e-15
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 4e-14
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 9e-14
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 3e-12
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 3e-05
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 4e-05
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 24  KMVDQDLSRLYPEHGSYFQTPGCQG--MLRRILLLWCLRHPEFGYRQGMHELLAPLLYVL 81
             +++DL R +PEH S+FQ     G   LRR+L  + L +PE GY QGM+ L APLL V+
Sbjct: 48  HQIEKDLRRTFPEH-SFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM 106

Query: 82  H 82
            
Sbjct: 107 E 107

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 710
KOG1091625 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 99.98
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 99.97
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.97
COG5210496 GTPase-activating protein [General function predic 99.96
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.96
KOG2223586 consensus Uncharacterized conserved protein, conta 99.93
KOG2222848 consensus Uncharacterized conserved protein, conta 99.91
KOG2224781 consensus Uncharacterized conserved protein, conta 99.9
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.85
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.8
KOG4347671 consensus GTPase-activating protein VRP [General f 99.79
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.78
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.76
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.32
KOG3636669 consensus Uncharacterized conserved protein, conta 99.31
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 98.77
KOG2801559 consensus Probable Rab-GAPs [Intracellular traffic 97.65
KOG1648813 consensus Uncharacterized conserved protein, conta 97.18
PF149611296 BROMI: Broad-minded protein 96.84
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-94  Score=781.65  Aligned_cols=501  Identities=52%  Similarity=0.804  Sum_probs=430.3

Q ss_pred             CCCCCCCCCCCchhhhcCChHHHHHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHH
Q 005176            1 MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYV   80 (710)
Q Consensus         1 ~dnPLs~~~~S~W~~~frd~ElekqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyV   80 (710)
                      |||||||+++|+|++||+|+|++++|++||+||||+++.|||.+.+|.||+|||++||+.||++||+||||||+||++||
T Consensus        83 idnPLSq~~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fV  162 (625)
T KOG1091|consen   83 IDNPLSQNPQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFV  162 (625)
T ss_pred             cCCccccCCCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhccccccccccccCCCccccCccccccccccccccchhccccCCCCccccccCCCChhhHHHHhhccccc
Q 005176           81 LHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEIQTIVQLSDAYG  160 (710)
Q Consensus        81 l~~D~~~l~ev~~~yed~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~sldeldpe~~~i~~~~d~yg  160 (710)
                      ++.|++.|.|+++.       .||.+.|+|.|.+|+|.+.+....                    .++++.+|.++|+||
T Consensus       163 l~~D~q~l~h~se~-------~~~~l~f~E~d~iy~~~y~k~d~d--------------------n~~lqs~lmls~~~~  215 (625)
T KOG1091|consen  163 LHVDNQALLHVSES-------LFDKLGFEERDVIYNFLYLKTDLD--------------------NTELQSVLMLSDEYG  215 (625)
T ss_pred             eehhHHHHHHHHHh-------hhhhcCcchhhhhhhHHHHhhhcc--------------------chhHHHHHHhhhccc
Confidence            99999999999874       688999999999999998885321                    268999999999999


Q ss_pred             cccchhhcccccccHHHHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhC
Q 005176          161 AEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELG  240 (710)
Q Consensus       161 ~egelg~vLs~k~~EaDAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elg  240 (710)
                      .|+|+|+++++++||+|+|++|+++|.+                      +|++.+++..+++||..+|+.||.||.++|
T Consensus       216 ~e~e~g~~~~e~~ie~day~~~d~l~~~----------------------l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l~  273 (625)
T KOG1091|consen  216 YEEELGIVLSEKLIEHDAYVMFDALMPG----------------------LPPVFEANFAQYHLLAKVDKSLHSHLVELG  273 (625)
T ss_pred             cccCcceecCcccCCcCcccchhhhccc----------------------chhHHHHhhhhhhhhhhccHHHHHHHHhcC
Confidence            9999999999999999999999999874                      688999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHhhCcCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHhHHHHhcC
Q 005176          241 VEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLAT  320 (710)
Q Consensus       241 Iep~lFalrWfltLFaREFpLe~vLrIWD~ifa~g~~~~~~~~e~~~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~  320 (710)
                      |+||+|.+||+++||+||||+.++|.|||.+                    .||.+||+.++.||+||||+++|+.||+.
T Consensus       274 i~pqifgiRWlRlLFGREfpL~dLLiVWD~~--------------------l~~d~pr~~Lv~~m~VsmLL~IRd~Llss  333 (625)
T KOG1091|consen  274 IEPQIFGIRWLRLLFGREFPLQDLLIVWDHV--------------------LIFDSPRGILVACMFVSMLLYIRDSLLSS  333 (625)
T ss_pred             CchHHHHHHHHHHHHcchhHHHHHHHHhhhh--------------------hhccCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999932                    23456789999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCch
Q 005176          321 ENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPLNVVPDSY  400 (710)
Q Consensus       321 e~~~e~Lq~L~nfP~~iDv~~LI~kA~~Lq~~~~~~~~~s~~~~~~~~~~~s~~~~~r~~~~~~~s~sp~~p~~~~~~~y  400 (710)
                      ++. .||++|+|||.++|++++|++|+.++.                ++.|+..+++|.+..   +.++.+|+...|++|
T Consensus       334 ~~~-tcL~~Lm~yP~~~Dv~~~iekAl~l~~----------------~~~K~n~~p~~~~~n---sf~~~s~~~isp~~~  393 (625)
T KOG1091|consen  334 EYQ-TCLQYLMNYPEIIDVDKFIEKALHLQK----------------LFPKSNAKPARDNSN---SFSDLSPVGISPCSY  393 (625)
T ss_pred             cch-hHHHHHhcCCCcCcHHHHHHHHHHHHH----------------hcccccccccCCCcc---cccccccccCChhhh
Confidence            985 599999999999999999999999998                345566778888866   677889999999999


Q ss_pred             hhhHHHHHHHHHHhhccccCCCCcc-hhhhhhHHhhhcccccccCCCCcccCCCCccCc-chhhhhhHHHHHhhhCCccc
Q 005176          401 WEGKWRDLHKAEEQRHDSSGKQNQT-QKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSR-SSIRRSLLEDLSKELGFEED  478 (710)
Q Consensus       401 wee~wr~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~  478 (710)
                      |+.+||+++++..+....+..+.++ +++.|.. +|  +.|+++||++     |++..| +++.|.++++++++++.   
T Consensus       394 w~~k~r~~~~~nse~~~~~~sps~~~k~~~~~~-~~--~~r~~~D~S~-----~~~~~k~~~~~R~~~~~~~~~l~t---  462 (625)
T KOG1091|consen  394 WEGKWRVLPRANSEESSMKISPSPIIKKKPVLQ-MK--LARLTIDPSR-----GSSEAKLSSSPRVLLLDLKEQLST---  462 (625)
T ss_pred             cccccCCCccccccccccccCCCcccccCcHHH-HH--HHHhhcCCcc-----ccccccCCcchhhhhcccccccCC---
Confidence            9999999999998877666666555 6899996 44  5699999999     555555 78999999999998850   


Q ss_pred             ccccccccccccCCCCchhhhhhhcccccccccccCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCccccccccc-C
Q 005176          479 SEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNENDSEKSSVAS-N  557 (710)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~  557 (710)
                                                                              |.+|...+|      +.+.|.+ +
T Consensus       463 --------------------------------------------------------p~~~d~~~~------~~s~v~~~q  480 (625)
T KOG1091|consen  463 --------------------------------------------------------PLSPDEDAN------EASTVSSIQ  480 (625)
T ss_pred             --------------------------------------------------------CCCcchhhh------hhhhhhhcc
Confidence                                                                    333423332      4455554 7


Q ss_pred             CCcccccccCCCC---CCCCCCCCCCCCCCcccCCCCCCcccccchhhhccccccchhhhhcCCCCccccccccCCcccc
Q 005176          558 SSVDENDRQSHTM---PESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAGEETSEKGGVATE  634 (710)
Q Consensus       558 ~~~~~~~~~~~~~---~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~  634 (710)
                      .|..+.+..++++   +.+.||+|+.++.+..          -.-.-++|+++|+||||||+||+..+|||++...    
T Consensus       481 ~s~lq~~l~~kd~~~~~~~~~l~i~~~~~~~~----------~~~~~~~k~~~~~~q~~~~l~~~l~~~etk~~~~----  546 (625)
T KOG1091|consen  481 PSKLQEDLSTKDQVTSQVNGPLEISRTLDGKS----------VLITKEDKLLSGLFQRLRKLGRTLSAEETKKLNT----  546 (625)
T ss_pred             hHHHHhhhcccchhhhhcCCcccccccCCcch----------hhhHHHHHhhhHHHHHHHHhCchhcccccccCCC----
Confidence            7777777777654   5689999999876610          0011178999999999999999999999822211    


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCC-CCCcccchhHHHhHHhhhHHHHHHHHHHHHHHhhhh
Q 005176          635 TKISANNESNQSNSKGASSNDGSCKSSSS-SKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLIC  699 (710)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~g~sml~~i~~i~~~~~~~~  699 (710)
                                            -|++..+ ...++.||+.+.|+||+||+|++||++||+||+|..
T Consensus       547 ----------------------~~s~~~~~~~s~~~~~~~~~~~~~~gq~~~~h~~~~~~~~~~~p  590 (625)
T KOG1091|consen  547 ----------------------GCSPPKHASSSGDTDQGSATTLKNLGQSMLEHIEMIESVFEQEP  590 (625)
T ss_pred             ----------------------CCCCCCcccccCCcccccccccccCchhHHHHHHHHHHhhccCc
Confidence                                  1333332 223377999999999999999999999999999996

>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query710
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 1e-05
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 2e-05
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 5e-05
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-04
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 26  VDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLL 78
           ++ D+ R  P H   +Q    Q  L+RIL LW +RHP  GY QG+++L+ P  
Sbjct: 90  IEIDIPRTNP-HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFF 141
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query710
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 7e-22
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-19
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 7e-21
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 7e-18
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-16
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-09
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 8e-09
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 9e-07
2qq8_A334 TBC1 domain family member 14; structural genomics 8e-09
2qq8_A334 TBC1 domain family member 14; structural genomics 3e-07
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score = 97.8 bits (243), Expect = 7e-22
 Identities = 31/231 (13%), Positives = 64/231 (27%), Gaps = 40/231 (17%)

Query: 172 KFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSS 231
             +E D +     L+        + D + H            ++     +  L+   D+ 
Sbjct: 172 TDLEADTFWCLTKLLEQ------ITDNYIHGQP--------GILRQVKNLSQLVKRIDAD 217

Query: 232 LHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGF 291
           L++H     VE   F  RW+  L  REF +G ++ +WD   +                  
Sbjct: 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET---------------- 261

Query: 292 GILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQA 351
                 +    +    S  +    +        + +    +F         +    +++ 
Sbjct: 262 -----SQEVTSSYSMSSNDIKPPVTPT-EPRVASFVTPTKDFQSPTTALSNMTPNNAVED 315

Query: 352 LALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPR-TPLNVVPDSYW 401
                 +  SS     V+     ++     L         T L   P   W
Sbjct: 316 ---SGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDW 363
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query710
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.95
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-42  Score=371.69  Aligned_cols=260  Identities=23%  Similarity=0.359  Sum_probs=198.4

Q ss_pred             CChHHHHHHHHhhchhCCCCccCCCChhHHHHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHhhhhhhhhhhhcccccc
Q 005176           18 RSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHED   97 (710)
Q Consensus        18 rd~ElekqIdkDL~RTfpe~~~~Fq~~~~q~~LrRIL~ayal~~PevGY~QGMneIaApLLyVl~~D~~~l~ev~~~yed   97 (710)
                      .+.++.++|++||.||||++ .+|+.+..+++|+|||++||.+||++|||||||+|+||||+++..+.....+       
T Consensus        82 ~~~~~~~qI~~Dv~RT~p~~-~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~-------  153 (396)
T 1fkm_A           82 RDIPTWHQIEIDIPRTNPHI-PLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQ-------  153 (396)
T ss_dssp             THHHHHHHHHHHGGGSSTTS-GGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGG-------
T ss_pred             ccHHHHHHHHHHhhhhCCCc-ccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccc-------
Confidence            45678899999999999999 9999999999999999999999999999999999999999998643100000       


Q ss_pred             ccccccCCCccccCccccccccccccccchhccccCCCCccccccCC-CChhhHHHHhhccccccccchhhcccccccHH
Q 005176           98 HFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDE-LDPEIQTIVQLSDAYGAEGELGIVLSEKFMEH  176 (710)
Q Consensus        98 ~f~d~fDg~~~~e~d~~y~~~~~~~~~~~e~e~~~~g~~~~i~slde-ldpe~~~i~~~~d~yg~egelg~vLs~k~~Ea  176 (710)
                        .++.+.           +                       +.+. ++.+.                     ...+|+
T Consensus       154 --~~~~~~-----------~-----------------------~~~~~l~~~~---------------------~~~~E~  176 (396)
T 1fkm_A          154 --IDDVEI-----------K-----------------------DPSTYMVDEQ---------------------ITDLEA  176 (396)
T ss_dssp             --GGGTTT-----------S-----------------------CGGGTCCHHH---------------------HHHHHH
T ss_pred             --cccccc-----------c-----------------------chhhccchhh---------------------hhhhHH
Confidence              000000           0                       0000 11110                     124599


Q ss_pred             HHHHHHHHHHhcccCCCcccccccCCCCCCccCCcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhC
Q 005176          177 DAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFG  256 (710)
Q Consensus       177 DAF~~F~~LM~~~~g~~~~~dfF~~s~~~gs~tgLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFa  256 (710)
                      ||||||.+||...      .++|..        +++++...+..+..||+.+||+||+||.++||+|.+|+++||+|||+
T Consensus       177 daF~~f~~lm~~~------~~~f~~--------~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~  242 (396)
T 1fkm_A          177 DTFWCLTKLLEQI------TDNYIH--------GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLM  242 (396)
T ss_dssp             HHHHHHHHHHGGG------GGGSST--------TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTG
T ss_pred             HHHHHHHHHHHHH------HHHHhh--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            9999999999974      478865        57899999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHhccCCCCC-----C---------CCCC--C----------------C--C-----C-CCcccccC
Q 005176          257 REFSLGDLLIIWDEIFASDSSKV-----N---------KDTE--D----------------D--A-----G-SGFGILSS  296 (710)
Q Consensus       257 REFpLe~vLrIWD~ifa~g~~~~-----~---------~~~e--~----------------~--~-----~-~~F~I~~s  296 (710)
                      |+||+++++||||.||++|....     .         ...+  .                .  .     . ..++++.+
T Consensus       243 ~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (396)
T 1fkm_A          243 REFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQS  322 (396)
T ss_dssp             GGSCHHHHHHHHHHHHHHHC------------------------------------------------------------
T ss_pred             hhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcccc
Confidence            99999999999999999881000     0         0000  0                0  0     0 01112222


Q ss_pred             chhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHHHhhcC
Q 005176          297 PRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVN----INLKKIIGKTKSLQALALDAN  357 (710)
Q Consensus       297 ~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~L~nfP~~----iDv~~LI~kA~~Lq~~~~~~~  357 (710)
                      +...|+++||+|||..+|+.||+.++ +++|++|+++|..    .|++.||.+|..++..+..+.
T Consensus       323 ~~~~~~~~v~~AlL~~~r~~Ll~~df-~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~  386 (396)
T 1fkm_A          323 SLNEFHVFVCAAFLIKWSDQLMEMDF-QETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT  386 (396)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHTTCCH-HHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence            33478999999999999999999874 8999999999974    699999999999999886543
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 710
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 1e-16
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 4e-14
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.5 bits (187), Expect = 1e-16
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 1   MDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLR 60
                     +   +  R       ++ D+ R  P    Y      Q  L+RIL LW +R
Sbjct: 64  RKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV-QNSLQRILYLWAIR 122

Query: 61  HPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKF--DGLSFHENDLTYNFD 118
           HP  GY QG+++L+ P       +    SQ+ +      +     + ++  E D T+ + 
Sbjct: 123 HPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD-TF-WC 180

Query: 119 FKKFLDSMED 128
             K L+ + D
Sbjct: 181 LTKLLEQITD 190
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query710
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.87
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.85
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.4e-22  Score=194.08  Aligned_cols=143  Identities=17%  Similarity=0.308  Sum_probs=114.9

Q ss_pred             CcHHHHHHHHHHHHHHHHhchhhhhhhHhhCCCcchhhhHHHHHhhCcCCChHHHHHHHHHHhccCCCCCCC--------
Q 005176          210 CLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNK--------  281 (710)
Q Consensus       210 gLp~i~~~~~~L~~LL~~~DP~L~~HL~elgIep~lFalrWfltLFaREFpLe~vLrIWD~ifa~g~~~~~~--------  281 (710)
                      |+||+...+..+..+|+.+||+||+||.++||++.+|++|||+|||+|+||+++++||||.||+++......        
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~   80 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSND   80 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhh
Confidence            789999999999999999999999999999999999999999999999999999999999999986532000        


Q ss_pred             -------CCCCC-------------------------CCCCcccccCchhHHHHHHHHHHHHHhHHHHhcCCCHHHHHHH
Q 005176          282 -------DTEDD-------------------------AGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQR  329 (710)
Q Consensus       282 -------~~e~~-------------------------~~~~F~I~~s~r~~fI~~vavAILl~lRs~LL~~e~~~e~Lq~  329 (710)
                             ..+..                         .......-......++.|+|+|||+..|+.|++.+ .+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll~~d-f~~~l~~  159 (188)
T d1fkma2          81 IKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMD-FQETITF  159 (188)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHHHHHHTHHHHTTCC-HHHHHHH
T ss_pred             hccccccccccchhhhhhccccccccccccccchhhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHcc-HHHHHHH
Confidence                   00000                         00000000123457899999999999999999887 4899999


Q ss_pred             HhcCCCC----CCHHHHHHHHHHHHHHH
Q 005176          330 LLNFPVN----INLKKIIGKTKSLQALA  353 (710)
Q Consensus       330 L~nfP~~----iDv~~LI~kA~~Lq~~~  353 (710)
                      |+++|+.    .|++.|+.+|..++..+
T Consensus       160 Lq~~P~~~~~~~di~~ll~~A~~~~~~~  187 (188)
T d1fkma2         160 LQNPPTKDWTETDIEMLLSEAFIWQSLY  187 (188)
T ss_dssp             HTSCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCcccHHHHHHHHHHHHHHh
Confidence            9999974    59999999999998764
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure