Citrus Sinensis ID: 005230


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------
MSRTSRAQSPEEKNENMEDKVNSEAGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSESLLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSDPEMSLESAEAESQKSIASGKKTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSAIGSTHQKSASSGSQLFSFGHFRSYSMSSLPQSPAPPSAPPKAQSSKPTFDLEDWDQYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVPSLLKNLKAYGEKSFQSSSSSLRLPSKTFEGNGSSSAADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQVLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRGPALHRVSTAPLVSESEKHNGDSATRSMSLNKPSAISDVVPSSGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGII
cccccccccccccccccccccccccccccccccHHHHHHccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccEEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEcccEEEEcccccEEEEEEEEEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEEEEEEEcccccccccccccEEEEEccccccccHHcccccccEEEEccccHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEEcccccccccccccEEEEEEccccccccccccccccccEEEEEEEEccccccccEEEEEEcccccccccEEEEccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEcccccEEEEccEEEEEEccccEEEccccEEEEEccccccccc
cccccccccccccccccccccccccccccEccccccEccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccHHHccccccccccEEcccccccccEEEEEEccccccccccHHHHcHEEEEEcccccEEEEEEEEEccccccccHHHHHEHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEcccccccccEEEEEccEEEEccccccEEEEEEEEEEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEEEEEHcccccccccccEEEEEcccccccccccEccccccEEEEccccHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEcccccccccccHHEEEEEHHHccccccccccccccccEEEEEEEEccccccccEEEEEccHHccccccEEEEcccccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEEccccccccccccEEEEEEEEccccccEEEEccEEEEEHHcccEEEccccEEEEcccccccccc
msrtsraqspeeknenmedkvnseagegqsshdVQVIHQngeylseekidlrkdisvsESLLRMEDHKRQTETLLHRFKNSHFFVRIaesgeplwskksdpemslesAEAESQKSIASGKKTAKNMSGVAAVIdkgdfdanlsggvaRNIVKccslsngdiVVLLQVNvgvdflrdpVIEILQFEKYRERslssenrdnsvitnpdpcgellkwllpldntvpppartlspprlnsgsaigsthqksassgsqlfsfghfrsysmsslpqspappsappkaqsskptfdledwdqyTSQKlfkgqrtgnegllsfrgvslERERfsvrcglegiyvpgrrwrrkleiiqpveihsfaadcntddllcvqirnvspahapdiVLYIDAITIVFEeaskggpssplpiacieagndhnlpnlalrrgeehsfilkpVPSLLKNLKAygeksfqssssslrlpsktfegngsssaaDQYAVMLSCRcnytesrlffkqptswrprisrDLMISVASEisgqsseanervtQLPVQVLTLQasnltsqdltltvlaptsftyppsvvslnssptspmspfigfseftgrlnderrgpalhrvstaplvsesekhngdsatrsmslnkpsaisdvvpssglgcthlwlqsrvplgcvpaqstaTIKLellpltdgiitlDTLHidvkekgatyvpehslkinattsistgii
msrtsraqspeeknenmEDKVNSEagegqsshdVQVIHQNGeylseekidlRKDISVSESLLRMEDHKRqtetllhrfknshffvriaesgeplwskksdPEMSLESAEAESQKSIASGKKTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFEKYRerslssenrdnsvitnPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSAIGSTHQKSASSGSQLFSFGHFRSYSMSSLPQSPAPPSAPPKAQSSKPTFDLEDWDQYTSQKlfkgqrtgnegllsfrgvslererfsvrcglegiyvpgrrwrrKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVPSLLKNLKAYGEKSfqssssslrlpsKTFEGNGSSSAADQYAVMLSCRCNYTEsrlffkqptswrpriSRDLMISVASEIsgqsseanerVTQLPVQVLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRGPALHrvstaplvsesekhngdsatrsmslnkPSAISDVVPSSGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKgatyvpehslkinattsistgii
MSRTSRAQSPEEKNENMEDKVNSEAGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSESLLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSDPEMSLESAEAESQKSIASGKKTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSAIGSTHQKSASSGSQLFSFGHFRSYsmsslpqspappsappkaqsskpTFDLEDWDQYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVPSLLKNLKAYGEKSFQsssssLRLPSKTFEGNGSSSAADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQVLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRGPALHRVSTAPLVSESEKHNGDSATRSMSLNKPSAISDVVPSSGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGII
************************************************************************TLLHRFKNSHFFVRIA****************************************VAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFEKY******************DPCGELLKWLLPLD*************************************************************************WDQYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEE*********LPIACIEAGNDHNLPNLALRRGEEHSFILKPVPSLLKNL********************************QYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISV****************QLPVQVLTLQASNLTSQDLTLTVLAPTSFTYP*************************************************************************SSGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKI***********
************************************************************LLRMEDHKRQTETLLHRFKNSHFFVRIAESGEP**********************************GVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFE******************NPDPCGELLKWLLPLDNTV************************************HF********************************W*QY*************EGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEA*******PL*IACIEAGNDHNLPNLALRRGEEHSFILKPV************************************AADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLM*********************PVQVLTLQASNLTSQDLTLTVLAPTSFT***************************************************************************SSGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGII
******************************SHDVQVIHQNGEYLSEEKIDLRKDISVSESLLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLW*******************************SGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFEKYRER********NSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLN****************SQLFSFGHFRSY***********************TFDLEDWDQYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVPSLLKNLKAYG*************************AADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASE***********VTQLPVQVLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRGPALHRVSTA****************SMSLNKPSAISDVVPSSGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGII
**************************************************LRKDISVSESLLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLW**********************SGKKTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVP******************************LF**GHFR*************************TFDLEDWDQYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVPSLLKN*****************************SAADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEIS******NERVTQLPVQVLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNS************S***********************************************SDVVP*SGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINAT********
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MSRTSRAQSPEEKNENMEDKVNSEAGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSESLLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSDPEMSLESAEAESQKSIASGKKTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIEILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSAIGSTHQKSASSGSQLFSFGHFRSYSMSSLPQSPAPPSAPPKAQSSKPTFDLEDWDQYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVPSLLKNLKAYGEKSFQSSSSSLRLPSKTFEGNGSSSAADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQVLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRGPALHRVSTAPLVSESEKHNGDSATRSMSLNKPSAISDVVPSSGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
225427570 853 PREDICTED: uncharacterized protein LOC10 0.987 0.818 0.682 0.0
255558224 843 conserved hypothetical protein [Ricinus 0.961 0.806 0.695 0.0
296085507 842 unnamed protein product [Vitis vinifera] 0.973 0.817 0.678 0.0
225424901 868 PREDICTED: uncharacterized protein LOC10 0.998 0.813 0.687 0.0
224100447 827 predicted protein [Populus trichocarpa] 0.970 0.829 0.687 0.0
296086432 832 unnamed protein product [Vitis vinifera] 0.951 0.808 0.65 0.0
356567564 858 PREDICTED: uncharacterized protein LOC10 0.978 0.806 0.644 0.0
356524124 849 PREDICTED: uncharacterized protein LOC10 0.978 0.815 0.647 0.0
297830426 837 hypothetical protein ARALYDRAFT_898144 [ 0.958 0.810 0.615 0.0
449526525 838 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.957 0.807 0.663 0.0
>gi|225427570|ref|XP_002266784.1| PREDICTED: uncharacterized protein LOC100254494 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/716 (68%), Positives = 577/716 (80%), Gaps = 18/716 (2%)

Query: 1   MSRTSRAQSPEEKNENMEDKVNSEAGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSES 60
           MS+    QS +  +  + D  NS  G+ + +   +  ++NGE L +EK+D +KDIS SES
Sbjct: 147 MSKNGIGQSTKNHSGEIGDASNSILGKLEVNPVGEATYRNGENLLKEKLDSQKDISASES 206

Query: 61  LLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSDPEMSLE-SAEAESQKSIASG 119
           LLRMEDHKRQTE LL +FK+SHFFVRIAESGEPLWSKK   E SL+ S  A  + ++   
Sbjct: 207 LLRMEDHKRQTEILLQKFKSSHFFVRIAESGEPLWSKKGASETSLQFSGVAAPKSTVTKT 266

Query: 120 KKTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVI 179
           +KTAK M+ ++AVID+G+F+A++SGGVARNIV CCSLSNGD+VVLLQVNV VDFL+DPV+
Sbjct: 267 RKTAKGMTPLSAVIDRGNFNASVSGGVARNIVDCCSLSNGDVVVLLQVNVAVDFLKDPVL 326

Query: 180 EILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSA 239
           EILQFEK+  R  SSEN+D+ V  N DPCG+LLKWLLPLDNT+PPP   LSPP L+SGS 
Sbjct: 327 EILQFEKFNNRKFSSENQDSLVHANQDPCGDLLKWLLPLDNTLPPPTCALSPP-LSSGSG 385

Query: 240 IGSTHQKS--ASSGSQLFSFGHFRSYSMSSLPQ---SPAPPSAPPKAQSSKPTFDLEDWD 294
           IG+T Q+S  ASSGSQLFSFGHFRSYSMS+LPQ   S  PP A P   S+KP F+LEDWD
Sbjct: 386 IGNTSQRSTPASSGSQLFSFGHFRSYSMSALPQNTTSAPPPIANP---STKPNFELEDWD 442

Query: 295 QYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIH 354
           +++ QK  K ++TG+E LLSFRGVSLE ERFSV CGLEGIY+PGRRWRRKLEIIQPVEIH
Sbjct: 443 RFSPQKFVKSEKTGSEELLSFRGVSLEPERFSVCCGLEGIYIPGRRWRRKLEIIQPVEIH 502

Query: 355 SFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGND 414
           SFAADCNTDDLLCVQI+NVSPAH PDIV+Y+DAIT+VFEEAS GG    LP+ACIEAGND
Sbjct: 503 SFAADCNTDDLLCVQIKNVSPAHIPDIVVYLDAITVVFEEASVGGSPRSLPMACIEAGND 562

Query: 415 HNLPNLALRRGEEHSFILKPVPSLLKNLKAYGEKSFQSSSSSLRLPS--KTFEGNGSSSA 472
           H LPNLALRRGEEHSFILKP  S  K L A G+     SS S  LP+     EG  S+  
Sbjct: 563 HCLPNLALRRGEEHSFILKPATSTWKLLMAPGQ-----SSQSAHLPAGNAAIEGKRSTLT 617

Query: 473 ADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQ 532
           +DQYAV++SCRCNYTESRLFFKQPTSWRPRISRDLMISVASE+S Q   +N RV++ PVQ
Sbjct: 618 SDQYAVLVSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEMSRQPLGSNGRVSEFPVQ 677

Query: 533 VLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRG 592
           VLTLQASNLT +DLTLTVLAP SFT PPS+++LNS+P+SPMSP +GFSEF G++  ER+ 
Sbjct: 678 VLTLQASNLTPEDLTLTVLAPASFTSPPSLMTLNSAPSSPMSPCLGFSEFCGKIGGERQA 737

Query: 593 PALHRVSTAPLVSESEKHNGDSATRSMSLN-KPSAISDVVPSSGLGCTHLWLQSRVPLGC 651
            AL R+S+AP+  E++K NGD+   S+S N K   ISDV+P++GLGCTHLWLQSRVPLG 
Sbjct: 738 TALPRLSSAPVPLENQKANGDTGALSVSSNEKAVPISDVIPNTGLGCTHLWLQSRVPLGS 797

Query: 652 VPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGII 707
           VP+QSTATIKLELLPLTDGIITLDTL IDVKEKG TY+PEHSLKINAT+SISTGI+
Sbjct: 798 VPSQSTATIKLELLPLTDGIITLDTLQIDVKEKGHTYIPEHSLKINATSSISTGIV 853




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558224|ref|XP_002520139.1| conserved hypothetical protein [Ricinus communis] gi|223540631|gb|EEF42194.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296085507|emb|CBI29239.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424901|ref|XP_002269942.1| PREDICTED: uncharacterized protein LOC100255337 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100447|ref|XP_002311880.1| predicted protein [Populus trichocarpa] gi|222851700|gb|EEE89247.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296086432|emb|CBI32021.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567564|ref|XP_003551988.1| PREDICTED: uncharacterized protein LOC100808045 [Glycine max] Back     alignment and taxonomy information
>gi|356524124|ref|XP_003530682.1| PREDICTED: uncharacterized protein LOC100796980 [Glycine max] Back     alignment and taxonomy information
>gi|297830426|ref|XP_002883095.1| hypothetical protein ARALYDRAFT_898144 [Arabidopsis lyrata subsp. lyrata] gi|297328935|gb|EFH59354.1| hypothetical protein ARALYDRAFT_898144 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449526525|ref|XP_004170264.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226485 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
TAIR|locus:2088495838 AT3G17900 "AT3G17900" [Arabido 0.963 0.812 0.596 9.6e-215
TAIR|locus:2088495 AT3G17900 "AT3G17900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2075 (735.5 bits), Expect = 9.6e-215, P = 9.6e-215
 Identities = 423/709 (59%), Positives = 521/709 (73%)

Query:     1 MSRTSRAQSPEEKNENMEDKVNSEAGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSES 60
             MSRT + +  +++N +M D  ++ +G+G+ S D Q   QNG+   +E +D +KD+S  ES
Sbjct:   154 MSRTGQRKVSDKQNGDMSDGASTPSGDGEMSPDAQFATQNGDSPCKESLDSQKDLSDGES 213

Query:    61 LLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSDPEMSLESAEAESQKSIASGK 120
             +LRMEDHKR+TE LL RF+ SHFFVRIAESGEPLWSKKS    SL  A+ E  +     +
Sbjct:   214 ILRMEDHKRRTEDLLSRFQKSHFFVRIAESGEPLWSKKS----SLV-ADTEMDEE----R 264

Query:   121 KTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIE 180
             K  K+   V+A +D+GDFD N+SGGVAR+  KCC+L NGDIVV LQV + VD  ++P+IE
Sbjct:   265 KRTKSRPCVSAFVDRGDFDPNVSGGVARSKAKCCALPNGDIVVSLQVYI-VDCPKEPIIE 323

Query:   181 ILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSAI 240
             ILQFEK++++  + EN       + DP G LLKWL+PLDNT+    R+L PP   S S  
Sbjct:   324 ILQFEKHQDQDQNPEN-------DKDPYGNLLKWLIPLDNTISQQPRSLPPPITPSPSIS 376

Query:   241 GSTHQK--SASSGSQLFSFGHFRSYXXXXXXXXXXXXXXXXXXXXXXXTFDLEDWDQYTS 298
              + H+   S++SGSQLFSFGHFRSY                       +FD+EDWD Y+ 
Sbjct:   377 STAHKPAISSTSGSQLFSFGHFRSYSMSALPPNTAPVTGPIKTQSSKPSFDIEDWDSYSG 436

Query:   299 QKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAA 358
             Q +  GQ++G E LLSFRGV+LER+RFSVRCGLEGI +PGRRWRRKLEIIQP+EI+SFAA
Sbjct:   437 QTVRNGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGRRWRRKLEIIQPIEINSFAA 496

Query:   359 DCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLP 418
             DCNTDDLLCVQI+NV+P HAPDIV+YIDAITIVFEEA K    S +PIACIEAGN+H+LP
Sbjct:   497 DCNTDDLLCVQIKNVAPTHAPDIVIYIDAITIVFEEAGKNASPSSVPIACIEAGNEHSLP 556

Query:   419 NLALRRGEEHSFILKPVPSLLKNLKAYGEKSFQXXXXXLRLPSKTFEGNGSSSAADQYAV 478
             NL LR+GEEHSFI+KP  S+  NLK    ++ +     L LP+  FE  GS  + DQYAV
Sbjct:   557 NLTLRKGEEHSFIVKPAFSVGSNLKPSAARN-KLKSSSLSLPTVNFERKGSGLSGDQYAV 615

Query:   479 MLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQVLTLQA 538
             M+SCRCNYTESRLFFKQ T WRPR+SRDLMISVASE+SG+    + R +QLPVQ+LTLQA
Sbjct:   616 MVSCRCNYTESRLFFKQRTKWRPRVSRDLMISVASEMSGEPCGPHGRASQLPVQILTLQA 675

Query:   539 SNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRGPALHRV 598
             SNLTS+DL+LTVLAP SFT PP+VVSLNS+PT+P+SPF+GFS+FT R+ +E+R   + + 
Sbjct:   676 SNLTSEDLSLTVLAPASFTSPPTVVSLNSTPTTPISPFLGFSDFTERVQNEKRNTTVRKQ 735

Query:   599 -STAPLVSESEKHNGDSATRSMSLNKPSAISDVVPSSGLGCTHLWLQSRVPLGCVPAQST 657
              S  P+  E+   N    T   S N PS   DVVP SGLGCTHLWLQSRVPLGCVP++ST
Sbjct:   736 QSLPPIPLETRTENN---TNGESSN-PS---DVVPKSGLGCTHLWLQSRVPLGCVPSKST 788

Query:   658 ATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGI 706
             ATIKLELLPLTDGIITLDTL I  KEKG  Y+PE SLKINAT+SIS+GI
Sbjct:   789 ATIKLELLPLTDGIITLDTLQIHAKEKGRRYIPEQSLKINATSSISSGI 837


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      707       679   0.00079  121 3  11 23  0.44    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  342 KB (2172 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  64.35u 0.10s 64.45t   Elapsed:  00:00:03
  Total cpu time:  64.35u 0.10s 64.45t   Elapsed:  00:00:03
  Start:  Tue May 21 02:43:53 2013   End:  Tue May 21 02:43:56 2013


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00007626001
SubName- Full=Chromosome chr2 scaffold_196, whole genome shotgun sequence; (824 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.9 bits (157), Expect = 7e-11
 Identities = 85/596 (14%), Positives = 159/596 (26%), Gaps = 212/596 (35%)

Query: 156 LSNGDIV-VLLQVNVGVDFLRD-PVIEILQFEKYRERSLSSENRDNSVITNPDPCGE--L 211
               DI+ V         F+ +    ++    K     LS E  D+ +I + D       
Sbjct: 16  YQYKDILSVFED-----AFVDNFDCKDVQDMPK---SILSKEEIDH-IIMSKDAVSGTLR 66

Query: 212 LKWLLPLDNTVPPPARTLSPPRLNSGSAIGSTHQKSASSGSQLFSFGHFRSYS--MSSLP 269
           L W L L          +          +    + +               Y   MS + 
Sbjct: 67  LFWTL-LSK----QEEMVQ-------KFVEEVLRIN---------------YKFLMSPIK 99

Query: 270 QSPAPPSAPPKAQSSKPTFDLEDWDQYTSQKLFKGQRTGNEGLLSFRGV--SLERERFSV 327
                PS   +    +      D     +Q   K   +  +  L  R     L   +  +
Sbjct: 100 TEQRQPSMMTRMYIEQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 328 RCGLEGIYVPGRRW-------RRKLEIIQPVEIH--SFAADCNTDDLLCVQIRNVSPAHA 378
             G+ G    G+ W         K++     +I   +   +CN+ + +   ++       
Sbjct: 155 IDGVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQK------ 204

Query: 379 PDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVP-S 437
               L    I   +   S    +  L I  I+A          LRR        KP    
Sbjct: 205 ----LLYQ-IDPNWTSRSDHSSNIKLRIHSIQA---------ELRR----LLKSKPYENC 246

Query: 438 L--LKNLKAYGEKSFQSSSSSLRLPSKTFEGNGSSSAADQYAVMLSCRCNYTESRLFFKQ 495
           L  L N+          ++ +       F               LSC+       L    
Sbjct: 247 LLVLLNV---------QNAKAW----NAFN--------------LSCKI------LL--- 270

Query: 496 PTSWRPRISRDLMISVASEISGQS----SEANERVTQLPVQVLTLQAS--NLTSQDLTLT 549
                   +R     V   +S  +    S  +  +T  P +V +L     +   QDL   
Sbjct: 271 -------TTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--- 318

Query: 550 VLAPTSFTYPPSVVSLNSSPTSPMSPF----IG--FSEFTGRLNDERRGPALHRVSTAPL 603
                    P  V++ N        P     I     +     ++ +             
Sbjct: 319 ---------PREVLTTN--------PRRLSIIAESIRDGLATWDNWKH------------ 349

Query: 604 VSESEKHNGDSATRSMSLN--KPS---------AI--SDV-VPSSGLGCTHLWLQSRVPL 649
               +K          SLN  +P+         ++      +P+  L    +W       
Sbjct: 350 -VNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDV---- 399

Query: 650 GCVPAQSTATI--KLELLPLTD-----GIITLDTLHIDVKEKGATYVPEHSLKINA 698
                     +  KL    L +       I++ ++++++K K       H   ++ 
Sbjct: 400 ---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00