Citrus Sinensis ID: 005230
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 707 | ||||||
| 225427570 | 853 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.818 | 0.682 | 0.0 | |
| 255558224 | 843 | conserved hypothetical protein [Ricinus | 0.961 | 0.806 | 0.695 | 0.0 | |
| 296085507 | 842 | unnamed protein product [Vitis vinifera] | 0.973 | 0.817 | 0.678 | 0.0 | |
| 225424901 | 868 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.813 | 0.687 | 0.0 | |
| 224100447 | 827 | predicted protein [Populus trichocarpa] | 0.970 | 0.829 | 0.687 | 0.0 | |
| 296086432 | 832 | unnamed protein product [Vitis vinifera] | 0.951 | 0.808 | 0.65 | 0.0 | |
| 356567564 | 858 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.806 | 0.644 | 0.0 | |
| 356524124 | 849 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.815 | 0.647 | 0.0 | |
| 297830426 | 837 | hypothetical protein ARALYDRAFT_898144 [ | 0.958 | 0.810 | 0.615 | 0.0 | |
| 449526525 | 838 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.957 | 0.807 | 0.663 | 0.0 |
| >gi|225427570|ref|XP_002266784.1| PREDICTED: uncharacterized protein LOC100254494 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/716 (68%), Positives = 577/716 (80%), Gaps = 18/716 (2%)
Query: 1 MSRTSRAQSPEEKNENMEDKVNSEAGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSES 60
MS+ QS + + + D NS G+ + + + ++NGE L +EK+D +KDIS SES
Sbjct: 147 MSKNGIGQSTKNHSGEIGDASNSILGKLEVNPVGEATYRNGENLLKEKLDSQKDISASES 206
Query: 61 LLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSDPEMSLE-SAEAESQKSIASG 119
LLRMEDHKRQTE LL +FK+SHFFVRIAESGEPLWSKK E SL+ S A + ++
Sbjct: 207 LLRMEDHKRQTEILLQKFKSSHFFVRIAESGEPLWSKKGASETSLQFSGVAAPKSTVTKT 266
Query: 120 KKTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVI 179
+KTAK M+ ++AVID+G+F+A++SGGVARNIV CCSLSNGD+VVLLQVNV VDFL+DPV+
Sbjct: 267 RKTAKGMTPLSAVIDRGNFNASVSGGVARNIVDCCSLSNGDVVVLLQVNVAVDFLKDPVL 326
Query: 180 EILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSA 239
EILQFEK+ R SSEN+D+ V N DPCG+LLKWLLPLDNT+PPP LSPP L+SGS
Sbjct: 327 EILQFEKFNNRKFSSENQDSLVHANQDPCGDLLKWLLPLDNTLPPPTCALSPP-LSSGSG 385
Query: 240 IGSTHQKS--ASSGSQLFSFGHFRSYSMSSLPQ---SPAPPSAPPKAQSSKPTFDLEDWD 294
IG+T Q+S ASSGSQLFSFGHFRSYSMS+LPQ S PP A P S+KP F+LEDWD
Sbjct: 386 IGNTSQRSTPASSGSQLFSFGHFRSYSMSALPQNTTSAPPPIANP---STKPNFELEDWD 442
Query: 295 QYTSQKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIH 354
+++ QK K ++TG+E LLSFRGVSLE ERFSV CGLEGIY+PGRRWRRKLEIIQPVEIH
Sbjct: 443 RFSPQKFVKSEKTGSEELLSFRGVSLEPERFSVCCGLEGIYIPGRRWRRKLEIIQPVEIH 502
Query: 355 SFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGND 414
SFAADCNTDDLLCVQI+NVSPAH PDIV+Y+DAIT+VFEEAS GG LP+ACIEAGND
Sbjct: 503 SFAADCNTDDLLCVQIKNVSPAHIPDIVVYLDAITVVFEEASVGGSPRSLPMACIEAGND 562
Query: 415 HNLPNLALRRGEEHSFILKPVPSLLKNLKAYGEKSFQSSSSSLRLPS--KTFEGNGSSSA 472
H LPNLALRRGEEHSFILKP S K L A G+ SS S LP+ EG S+
Sbjct: 563 HCLPNLALRRGEEHSFILKPATSTWKLLMAPGQ-----SSQSAHLPAGNAAIEGKRSTLT 617
Query: 473 ADQYAVMLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQ 532
+DQYAV++SCRCNYTESRLFFKQPTSWRPRISRDLMISVASE+S Q +N RV++ PVQ
Sbjct: 618 SDQYAVLVSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEMSRQPLGSNGRVSEFPVQ 677
Query: 533 VLTLQASNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRG 592
VLTLQASNLT +DLTLTVLAP SFT PPS+++LNS+P+SPMSP +GFSEF G++ ER+
Sbjct: 678 VLTLQASNLTPEDLTLTVLAPASFTSPPSLMTLNSAPSSPMSPCLGFSEFCGKIGGERQA 737
Query: 593 PALHRVSTAPLVSESEKHNGDSATRSMSLN-KPSAISDVVPSSGLGCTHLWLQSRVPLGC 651
AL R+S+AP+ E++K NGD+ S+S N K ISDV+P++GLGCTHLWLQSRVPLG
Sbjct: 738 TALPRLSSAPVPLENQKANGDTGALSVSSNEKAVPISDVIPNTGLGCTHLWLQSRVPLGS 797
Query: 652 VPAQSTATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGII 707
VP+QSTATIKLELLPLTDGIITLDTL IDVKEKG TY+PEHSLKINAT+SISTGI+
Sbjct: 798 VPSQSTATIKLELLPLTDGIITLDTLQIDVKEKGHTYIPEHSLKINATSSISTGIV 853
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558224|ref|XP_002520139.1| conserved hypothetical protein [Ricinus communis] gi|223540631|gb|EEF42194.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|296085507|emb|CBI29239.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225424901|ref|XP_002269942.1| PREDICTED: uncharacterized protein LOC100255337 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224100447|ref|XP_002311880.1| predicted protein [Populus trichocarpa] gi|222851700|gb|EEE89247.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|296086432|emb|CBI32021.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356567564|ref|XP_003551988.1| PREDICTED: uncharacterized protein LOC100808045 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356524124|ref|XP_003530682.1| PREDICTED: uncharacterized protein LOC100796980 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297830426|ref|XP_002883095.1| hypothetical protein ARALYDRAFT_898144 [Arabidopsis lyrata subsp. lyrata] gi|297328935|gb|EFH59354.1| hypothetical protein ARALYDRAFT_898144 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449526525|ref|XP_004170264.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226485 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 707 | ||||||
| TAIR|locus:2088495 | 838 | AT3G17900 "AT3G17900" [Arabido | 0.963 | 0.812 | 0.596 | 9.6e-215 |
| TAIR|locus:2088495 AT3G17900 "AT3G17900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2075 (735.5 bits), Expect = 9.6e-215, P = 9.6e-215
Identities = 423/709 (59%), Positives = 521/709 (73%)
Query: 1 MSRTSRAQSPEEKNENMEDKVNSEAGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSES 60
MSRT + + +++N +M D ++ +G+G+ S D Q QNG+ +E +D +KD+S ES
Sbjct: 154 MSRTGQRKVSDKQNGDMSDGASTPSGDGEMSPDAQFATQNGDSPCKESLDSQKDLSDGES 213
Query: 61 LLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSDPEMSLESAEAESQKSIASGK 120
+LRMEDHKR+TE LL RF+ SHFFVRIAESGEPLWSKKS SL A+ E + +
Sbjct: 214 ILRMEDHKRRTEDLLSRFQKSHFFVRIAESGEPLWSKKS----SLV-ADTEMDEE----R 264
Query: 121 KTAKNMSGVAAVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGVDFLRDPVIE 180
K K+ V+A +D+GDFD N+SGGVAR+ KCC+L NGDIVV LQV + VD ++P+IE
Sbjct: 265 KRTKSRPCVSAFVDRGDFDPNVSGGVARSKAKCCALPNGDIVVSLQVYI-VDCPKEPIIE 323
Query: 181 ILQFEKYRERSLSSENRDNSVITNPDPCGELLKWLLPLDNTVPPPARTLSPPRLNSGSAI 240
ILQFEK++++ + EN + DP G LLKWL+PLDNT+ R+L PP S S
Sbjct: 324 ILQFEKHQDQDQNPEN-------DKDPYGNLLKWLIPLDNTISQQPRSLPPPITPSPSIS 376
Query: 241 GSTHQK--SASSGSQLFSFGHFRSYXXXXXXXXXXXXXXXXXXXXXXXTFDLEDWDQYTS 298
+ H+ S++SGSQLFSFGHFRSY +FD+EDWD Y+
Sbjct: 377 STAHKPAISSTSGSQLFSFGHFRSYSMSALPPNTAPVTGPIKTQSSKPSFDIEDWDSYSG 436
Query: 299 QKLFKGQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRRWRRKLEIIQPVEIHSFAA 358
Q + GQ++G E LLSFRGV+LER+RFSVRCGLEGI +PGRRWRRKLEIIQP+EI+SFAA
Sbjct: 437 QTVRNGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGRRWRRKLEIIQPIEINSFAA 496
Query: 359 DCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLP 418
DCNTDDLLCVQI+NV+P HAPDIV+YIDAITIVFEEA K S +PIACIEAGN+H+LP
Sbjct: 497 DCNTDDLLCVQIKNVAPTHAPDIVIYIDAITIVFEEAGKNASPSSVPIACIEAGNEHSLP 556
Query: 419 NLALRRGEEHSFILKPVPSLLKNLKAYGEKSFQXXXXXLRLPSKTFEGNGSSSAADQYAV 478
NL LR+GEEHSFI+KP S+ NLK ++ + L LP+ FE GS + DQYAV
Sbjct: 557 NLTLRKGEEHSFIVKPAFSVGSNLKPSAARN-KLKSSSLSLPTVNFERKGSGLSGDQYAV 615
Query: 479 MLSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQVLTLQA 538
M+SCRCNYTESRLFFKQ T WRPR+SRDLMISVASE+SG+ + R +QLPVQ+LTLQA
Sbjct: 616 MVSCRCNYTESRLFFKQRTKWRPRVSRDLMISVASEMSGEPCGPHGRASQLPVQILTLQA 675
Query: 539 SNLTSQDLTLTVLAPTSFTYPPSVVSLNSSPTSPMSPFIGFSEFTGRLNDERRGPALHRV 598
SNLTS+DL+LTVLAP SFT PP+VVSLNS+PT+P+SPF+GFS+FT R+ +E+R + +
Sbjct: 676 SNLTSEDLSLTVLAPASFTSPPTVVSLNSTPTTPISPFLGFSDFTERVQNEKRNTTVRKQ 735
Query: 599 -STAPLVSESEKHNGDSATRSMSLNKPSAISDVVPSSGLGCTHLWLQSRVPLGCVPAQST 657
S P+ E+ N T S N PS DVVP SGLGCTHLWLQSRVPLGCVP++ST
Sbjct: 736 QSLPPIPLETRTENN---TNGESSN-PS---DVVPKSGLGCTHLWLQSRVPLGCVPSKST 788
Query: 658 ATIKLELLPLTDGIITLDTLHIDVKEKGATYVPEHSLKINATTSISTGI 706
ATIKLELLPLTDGIITLDTL I KEKG Y+PE SLKINAT+SIS+GI
Sbjct: 789 ATIKLELLPLTDGIITLDTLQIHAKEKGRRYIPEQSLKINATSSISSGI 837
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 707 679 0.00079 121 3 11 23 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 622 (66 KB)
Total size of DFA: 342 KB (2172 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 64.35u 0.10s 64.45t Elapsed: 00:00:03
Total cpu time: 64.35u 0.10s 64.45t Elapsed: 00:00:03
Start: Tue May 21 02:43:53 2013 End: Tue May 21 02:43:56 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00007626001 | SubName- Full=Chromosome chr2 scaffold_196, whole genome shotgun sequence; (824 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 707 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 64.9 bits (157), Expect = 7e-11
Identities = 85/596 (14%), Positives = 159/596 (26%), Gaps = 212/596 (35%)
Query: 156 LSNGDIV-VLLQVNVGVDFLRD-PVIEILQFEKYRERSLSSENRDNSVITNPDPCGE--L 211
DI+ V F+ + ++ K LS E D+ +I + D
Sbjct: 16 YQYKDILSVFED-----AFVDNFDCKDVQDMPK---SILSKEEIDH-IIMSKDAVSGTLR 66
Query: 212 LKWLLPLDNTVPPPARTLSPPRLNSGSAIGSTHQKSASSGSQLFSFGHFRSYS--MSSLP 269
L W L L + + + + Y MS +
Sbjct: 67 LFWTL-LSK----QEEMVQ-------KFVEEVLRIN---------------YKFLMSPIK 99
Query: 270 QSPAPPSAPPKAQSSKPTFDLEDWDQYTSQKLFKGQRTGNEGLLSFRGV--SLERERFSV 327
PS + + D +Q K + + L R L + +
Sbjct: 100 TEQRQPSMMTRMYIEQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 328 RCGLEGIYVPGRRW-------RRKLEIIQPVEIH--SFAADCNTDDLLCVQIRNVSPAHA 378
G+ G G+ W K++ +I + +CN+ + + ++
Sbjct: 155 IDGVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQK------ 204
Query: 379 PDIVLYIDAITIVFEEASKGGPSSPLPIACIEAGNDHNLPNLALRRGEEHSFILKPVP-S 437
L I + S + L I I+A LRR KP
Sbjct: 205 ----LLYQ-IDPNWTSRSDHSSNIKLRIHSIQA---------ELRR----LLKSKPYENC 246
Query: 438 L--LKNLKAYGEKSFQSSSSSLRLPSKTFEGNGSSSAADQYAVMLSCRCNYTESRLFFKQ 495
L L N+ ++ + F LSC+ L
Sbjct: 247 LLVLLNV---------QNAKAW----NAFN--------------LSCKI------LL--- 270
Query: 496 PTSWRPRISRDLMISVASEISGQS----SEANERVTQLPVQVLTLQAS--NLTSQDLTLT 549
+R V +S + S + +T P +V +L + QDL
Sbjct: 271 -------TTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--- 318
Query: 550 VLAPTSFTYPPSVVSLNSSPTSPMSPF----IG--FSEFTGRLNDERRGPALHRVSTAPL 603
P V++ N P I + ++ +
Sbjct: 319 ---------PREVLTTN--------PRRLSIIAESIRDGLATWDNWKH------------ 349
Query: 604 VSESEKHNGDSATRSMSLN--KPS---------AI--SDV-VPSSGLGCTHLWLQSRVPL 649
+K SLN +P+ ++ +P+ L +W
Sbjct: 350 -VNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDV---- 399
Query: 650 GCVPAQSTATI--KLELLPLTD-----GIITLDTLHIDVKEKGATYVPEHSLKINA 698
+ KL L + I++ ++++++K K H ++
Sbjct: 400 ---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00