Citrus Sinensis ID: 005232

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS

cccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcc

ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHcEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcc

MELQNTVKEALNAlyhhpddavRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKkfhkgppkvrTQISIAVAALAVHIsaedwggggivNWLRdemnshpefvpGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLkhripgsvlashPLVLTALSSLHSEILSEASVNVISELIHYsaagssggatvnmpLIQVIVPQIMSLkahltdsskdEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLevashpeydiasmTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRvqypqdyqdlsLEDLKEfkhtrydlaccssstlTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVaccgnkhnewrpaEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqlLQTVCLTIGAYSkwfdaassdpSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTavngegslkvsaeDSLHLVEALSMVITELPQVDAKKALEMlclpvvtplqeiinqgpeilqkkhprdltvhIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKfhkgppkvRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGpeilqkkhprdLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqllqTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTaaaaalaFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS

**********LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK******************SLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAAR***********TSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL*********VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN**********RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA**

*ELQNTVKEALNALYHHP***VRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEV***********RRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFG*******ERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVA***N*HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGP****KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH********EDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN*********RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS

*ELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYI********EAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		707	2.2.26 [Sep-21-2011]
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.893	0.684	0.254	1e-51
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.893	0.684	0.251	4e-50
Q9USZ2		955	Uncharacterized protein C	yes	no	0.736	0.545	0.256	2e-39
Q99189		972	mRNA transport regulator	yes	no	0.743	0.541	0.244	4e-32
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.820	0.602	0.233	5e-25
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.820	0.602	0.233	5e-25
O94829		963	Importin-13 OS=Homo sapie	no	no	0.817	0.600	0.232	6e-25
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.821	0.603	0.231	1e-24
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.823	0.604	0.229	3e-23
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.814	0.601	0.239	7e-23

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function desciption

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 185/728 (25%), Positives = 331/728 (45%), Gaps = 96/728 (13%)

Query: 7   VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66
           V +A+ ALYH PD + + +A  WL + Q ++ AW+++D LL     ++E+  F +QT++ 
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQ-IRQDVESCYFAAQTMKM 69

Query: 67  KVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGI 126
           K+Q    ELP+++   L+DSL T ++      P + TQ+++A+A LA+ + +  W   G 
Sbjct: 70  KIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPS--W--KGC 125

Query: 127 VNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLT 186
           V  L ++ ++    +P  LE+LTVLPEEV +  +     RR +  ++L       +S L 
Sbjct: 126 VQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLM 185

Query: 187 ACLHINELKE----QVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            C+      E    +V     SW  L       VL S+ +    L +L  E+L +   + 
Sbjct: 186 TCVEKAGTDEKMLMKVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DK 236

Query: 243 ISELIHYSAAGSSGGA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIA 293
            S  +H +A+     A         N+PL   +   +++L+   H+  + +D + V    
Sbjct: 237 TSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYC 296

Query: 294 RLFADMGDSYVELIATGSDES---MLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350
           R+F ++ ++++E I     +    +  +  LL  A HP+Y++  ++FNFW+ L   L K 
Sbjct: 297 RIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKT 356

Query: 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE--DLKEFKHT 408
           +  +  G              +F++  + L+  ++   Q   D++ +  E  D  EF+  
Sbjct: 357 NDEVIHG--------------IFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR-- 400

Query: 409 RYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWR 468
                             + V+D++ D   ++G       LY    EG       +  W 
Sbjct: 401 ------------------MRVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWE 435

Query: 469 PAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAA 526
             EA LF + AI+     V+ E  P ++ +L  + + P+ + T     +I    +  +  
Sbjct: 436 VTEAVLFIMAAIA---KSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVV 492

Query: 527 SSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586
             +P  L  VL  L  G+   +  A+AAA A  +IC  CR  +  + +GL  + R+    
Sbjct: 493 DRNPQFLDPVLGYLMKGLC-EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSL--- 548

Query: 587 EGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 646
             S  +S E ++ L++  ++V+  LP     + L  LC   V  L+++++Q P       
Sbjct: 549 -DSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGI 604

Query: 647 PRDLTVHIDRFAYIFRYVN--------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698
             D TV +DR A IFR+ N        HP      IQ +WP+     +    D R +E  
Sbjct: 605 SSDPTVFLDRLAVIFRHTNPIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERC 662

Query: 699 CRACKYAV 706
           CR  ++AV
Sbjct: 663 CRCLRFAV 670

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Homo sapiens (taxid: 9606)

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
225457174		960	PREDICTED: transportin-3 [Vitis vinifera	0.974	0.717	0.842	0.0
449440732		968	PREDICTED: transportin-3-like [Cucumis s	0.974	0.711	0.815	0.0
356562787		960	PREDICTED: transportin-3-like isoform 1	0.974	0.717	0.817	0.0
356562789		968	PREDICTED: transportin-3-like isoform 2	0.974	0.711	0.808	0.0
356512770		959	PREDICTED: transportin-3-like isoform 1	0.973	0.717	0.811	0.0
356512772		967	PREDICTED: transportin-3-like isoform 2	0.973	0.711	0.802	0.0
255540833		967	transportin, putative [Ricinus communis]	0.974	0.712	0.780	0.0
297797229		961	hypothetical protein ARALYDRAFT_496440 [	0.970	0.713	0.740	0.0
42568712		958	armadillo/beta-catenin-like repeat-conta	0.970	0.716	0.737	0.0
357146633		964	PREDICTED: transportin-3-like [Brachypod	0.967	0.709	0.646	0.0

>gi\|225457174\|ref\|XP_002283854.1\| PREDICTED: transportin-3 [Vitis vinifera] gi\|297733855\|emb\|CBI15102.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/707 (84%), Positives = 638/707 (90%), Gaps = 18/707 (2%)

Query: 1   MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
           MELQNTVKEALNALYHHPDD+VRMQADRWLQDFQ TIDAWQV+DNLLHDATSNLETLIFC
Sbjct: 1   MELQNTVKEALNALYHHPDDSVRMQADRWLQDFQRTIDAWQVSDNLLHDATSNLETLIFC 60

Query: 61  SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
           SQTLRSKVQRD EELPSEA R L+DSLNTLLKKFHKGPPKVRTQISIAVAALAVH+ AED
Sbjct: 61  SQTLRSKVQRDFEELPSEAFRPLRDSLNTLLKKFHKGPPKVRTQISIAVAALAVHVPAED 120

Query: 121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
           WG GGIV WLRDEMNSHPEF+PGFLELL VLPEEVFNYKIAARPERRRQFEKELTS+MEV
Sbjct: 121 WGDGGIVKWLRDEMNSHPEFIPGFLELLMVLPEEVFNYKIAARPERRRQFEKELTSEMEV 180

Query: 181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
           AL+ LTACL+INELKEQVLEAFASWLRL+H IPG+VLASHPLVLTALSSL+SE+LSEASV
Sbjct: 181 ALNILTACLNINELKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASV 240

Query: 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
           NV+SELIHY+ AGSSGGA+V +PLIQVIVPQ+M+LK  L DSSKDEEDVKAI RLFADMG
Sbjct: 241 NVVSELIHYTTAGSSGGASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMG 300

Query: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
           DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWH+LQV LTKRD+Y+SFGNEA
Sbjct: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEA 360

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTL 420
           S EAER+RRLQVFRS+YESLVSLVS RV+YP+DYQDLS EDLK+FK TRY          
Sbjct: 361 SIEAERNRRLQVFRSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRY---------- 410

Query: 421 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGN-KHNEWRPAEAALFCIRA 479
                  AVADVLIDAASVLGG+ATLKILY+K VE VA CGN +HNEWRPAEAAL+CIRA
Sbjct: 411 -------AVADVLIDAASVLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRA 463

Query: 480 ISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539
           IS YVSVVEAEVMPQVM +LPKLP QPQLLQTVCLTIGAYSKW DAA    SI  SV+ I
Sbjct: 464 ISNYVSVVEAEVMPQVMNMLPKLPHQPQLLQTVCLTIGAYSKWLDAAPGGLSIFPSVIDI 523

Query: 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599
           L SGMS SED+AAAAALAF+HICDDCRKKLCG LDGL+++Y  AVNGEG+ KV AEDSLH
Sbjct: 524 LMSGMSISEDSAAAAALAFKHICDDCRKKLCGSLDGLFHIYHRAVNGEGNFKVPAEDSLH 583

Query: 600 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659
           LVEALSMVITELP   AKKALE LCLPVVT LQE++NQGPEIL KK  R+ TVHIDRFAY
Sbjct: 584 LVEALSMVITELPPDHAKKALEALCLPVVTSLQEVVNQGPEILDKKVAREFTVHIDRFAY 643

Query: 660 IFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706
           IFRYVNHPEAVADAIQRLWPIFKAIFD+RAWDMRTMESLCRACKYAV
Sbjct: 644 IFRYVNHPEAVADAIQRLWPIFKAIFDVRAWDMRTMESLCRACKYAV 690

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449440732\|ref\|XP_004138138.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356562787\|ref\|XP_003549650.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356562789\|ref\|XP_003549651.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356512770\|ref\|XP_003525089.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356512772\|ref\|XP_003525090.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|255540833\|ref\|XP_002511481.1\| transportin, putative [Ricinus communis] gi\|223550596\|gb\|EEF52083.1\| transportin, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297797229\|ref\|XP_002866499.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] gi\|297312334\|gb\|EFH42758.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|42568712|ref|NP_201066.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|27311605|gb|AAO00768.1| unknown protein [Arabidopsis thaliana] gi|34365727|gb|AAQ65175.1| At5g62590 [Arabidopsis thaliana] gi|110739500|dbj|BAF01659.1| hypothetical protein [Arabidopsis thaliana] gi|110741326|dbj|BAF02213.1| hypothetical protein [Arabidopsis thaliana] gi|332010246|gb|AED97629.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357146633\|ref\|XP_003574061.1\| PREDICTED: transportin-3-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.584	0.431	0.794	2.2e-266
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.486	0.372	0.269	8.4e-46
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.486	0.372	0.266	4.2e-45
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.482	0.369	0.268	4.8e-45
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.482	0.367	0.268	5e-45
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.466	0.357	0.257	2.6e-44
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.486	0.359	0.269	9.7e-44
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.486	0.373	0.269	1.7e-43
FB\|FBgn0031456		932	Trn-SR "Transportin-Serine/Arg	0.482	0.365	0.276	2.1e-42
CGD\|CAL0001884		959	MTR10 [Candida albicans (taxid	0.557	0.410	0.255	6.3e-39

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1688 (599.3 bits), Expect = 2.2e-266, Sum P(2) = 2.2e-266
 Identities = 328/413 (79%), Positives = 367/413 (88%)

Query:     1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
             ME QN VKEALNALYHHPDD VR+ ADRWLQ+FQ T+DAWQVADNLLHD++SNLETLIFC
Sbjct:     1 MEHQNAVKEALNALYHHPDDTVRVHADRWLQNFQGTLDAWQVADNLLHDSSSNLETLIFC 60

Query:    61 SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
             SQTLRSKVQRD EELP  A + L+ SL TLLKKFHKGPPKVRTQISIAVAALAVH+ A D
Sbjct:    61 SQTLRSKVQRDFEELPPGAFQKLRQSLTTLLKKFHKGPPKVRTQISIAVAALAVHVPAAD 120

Query:   121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
             WG GGI++WLRDEM+ HPE+VPGFLELLTVLPEE FNYKIAARP+RRRQFEKELTSQME 
Sbjct:   121 WGDGGIISWLRDEMHMHPEYVPGFLELLTVLPEETFNYKIAARPDRRRQFEKELTSQMEA 180

Query:   181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
             ALS L+ACL I+ELKEQVLEAFASWLRL+H IPG+VLA HPLV  ALSSL+ + LSEASV
Sbjct:   181 ALSILSACLKISELKEQVLEAFASWLRLRHGIPGTVLACHPLVHAALSSLNCDPLSEASV 240

Query:   241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
             NVISELIH++A+ SSGG +   PLIQVIVPQI+SL+AHL DSSKDEEDVKAI RLFAD+G
Sbjct:   241 NVISELIHHTASPSSGGISAQTPLIQVIVPQILSLQAHLRDSSKDEEDVKAIGRLFADVG 300

Query:   301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
             DSYVELIATGSDE M+IVHALLEV +HPE+DIASMTFNFWHSLQ++LTKR+SY S G+EA
Sbjct:   301 DSYVELIATGSDEPMVIVHALLEVTAHPEFDIASMTFNFWHSLQLMLTKRESYSSLGSEA 360

Query:   361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 413
             S E ER+RRL +F+ AY+SLVSLV FRVQYP+DYQ LS EDLKEFK TRY +A
Sbjct:   361 SIEVERNRRLHIFQPAYQSLVSLVGFRVQYPEDYQGLSYEDLKEFKQTRYAVA 413

GO:0005634 "nucleus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0043484 "regulation of RNA splicing" evidence=IMP

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

FB\|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

CGD\|CAL0001884 MTR10 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016179001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (960 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		707
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	2e-18
COG5101		1053	COG5101, CRM1, Importin beta-related nuclear trans	1e-05
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	7e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 98  PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157
           P  +R ++++A+A LA      +W        L   ++S P      L +L VLPEE+F+
Sbjct: 1   PKFIRNKLALALAELAKQEWPSNWPT--FFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHR 211
           + +     +RR + +  L SQM   L  L   L  +     EL    L+   SWL     
Sbjct: 59  FSRTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLS---W 115

Query: 212 IPGSVLASHPLVLTALSSLHSEILSEASVNVI 243
           IP  ++ + PL+      L    L EA+V  +
Sbjct: 116 IPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		707
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.97
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.94
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.91
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.91
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.74
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.72
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.71
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.68
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.6
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	99.33
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.12
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.99
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.79
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.09
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.81
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.78
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	97.59
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.37
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.21
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.14
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.0
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.17
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.1
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.04
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.86
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.86
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.78
PTZ00429		746	beta-adaptin; Provisional	95.31
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.04
KOG1242		569	consensus Protein containing adaptin N-terminal re	94.76
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.12
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.11
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	93.94
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	93.65
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	93.44
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	92.92
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.79
PRK09687		280	putative lyase; Provisional	92.44
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.02
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	91.87
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	90.4
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	89.92
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	89.42
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	89.28
KOG0212		675	consensus Uncharacterized conserved protein [Funct	88.84
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	88.74
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	88.39
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	88.03
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	87.79
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	87.62
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	86.86
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	86.71
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	86.32
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	85.68
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	83.95
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	83.63
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	83.53
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	83.07
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	83.05
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	81.73
PRK09687		280	putative lyase; Provisional	81.46
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	81.09
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	80.54

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=8.1e-73  Score=599.22  Aligned_cols=656  Identities=21%  Similarity=0.342  Sum_probs=540.3

Q ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 005232            3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG   82 (707)
Q Consensus         3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~   82 (707)
                      +++.|++++..+|++++++..+.+++||++.|+||.+|++.++|++. ++..++|||||.||+.||+++|++++++++..
T Consensus         5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q   83 (982)
T KOG2022|consen    5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPANEAVQ   83 (982)
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence            48999999999999999999999999999999999999999999985 77789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CchhHHHHHhccchhhc
Q 005232           83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVLPEEV  155 (707)
Q Consensus        83 lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~--~~-----~~~~~~L~~L~~L~EE~  155 (707)
                      |+.+++..+.+++.+|+.|.+|+|.++|.+++++-++.||+  .+.+++..++.  +|     ..+.++|+.|+.+|+|.
T Consensus        84 L~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~  161 (982)
T KOG2022|consen   84 LKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF  161 (982)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence            99999999999999999999999999999999999999999  88999888765  23     25789999999999999


Q ss_pred             ccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHhccCCCCCcccccchhHHH
Q 005232          156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLT  225 (707)
Q Consensus       156 ~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----------~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~  225 (707)
                      .+..++  ..+|..++.+|.+....|..++..+++..          -....+++|..+|+++. ..+  ......+++.
T Consensus       162 q~~~l~--~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~--~~~c~~i~~~  236 (982)
T KOG2022|consen  162 QHVTLP--LTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLT--GMDCDQITQV  236 (982)
T ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-ccc--cccHHHHHHH
Confidence            887654  56789999999999999999999888753          24678999999999953 233  2234556666


Q ss_pred             HHhcCCC--CccHHHH---------------HHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhh----hHHHhccCCC
Q 005232          226 ALSSLHS--EILSEAS---------------VNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS----LKAHLTDSSK  284 (707)
Q Consensus       226 ~~~~L~~--~~~~~~a---------------~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~----l~~~l~~~~~  284 (707)
                      ++..++.  ....+++               +...+..+.......   .......+..++.+.++    ..+...+++.
T Consensus       237 ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~---y~nti~~li~i~~~~l~e~~~~~~~~e~~d~  313 (982)
T KOG2022|consen  237 LLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEF---YRNTITLLISICLGILQEVSGKIQEEENADA  313 (982)
T ss_pred             HHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            6666651  1112222               222222221111100   00111122223333221    1122233344


Q ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHcCC------cchHHHHHHHhhhcccCc-----hhhhhhhHHHHHHHHHHHhhccCc
Q 005232          285 DEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILTKRDSY  353 (707)
Q Consensus       285 d~~~~~~l~~l~~~l~e~~~~~i~~~~------~~~~~~~~~ll~~~~~~~-----~~v~~~~l~FW~~l~~~l~~~~~~  353 (707)
                      .+|....+++++++.+|++.+.+.++.      +.+.++++.++.|++.|+     +.+|..++.||++|.+++....  
T Consensus       314 ~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~--  391 (982)
T KOG2022|consen  314 SEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI--  391 (982)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh--
Confidence            467788999999999999998887532      346789999999999986     5789999999999999886431  


Q ss_pred             cccCcccchHHHHHHHHHhhH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhh
Q 005232          354 ISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA  430 (707)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~  430 (707)
                          ++..     +.+...|+ |+|.+++++++.|+.+|.+  +..|+.|++|+|+.||++                 ++
T Consensus       392 ----~e~~-----~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-----------------iS  445 (982)
T KOG2022|consen  392 ----NETQ-----QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-----------------IS  445 (982)
T ss_pred             ----hccC-----CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-----------------HH
Confidence                1211     11234555 9999999999999999974  677999999999999999                 99


Q ss_pred             hHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCC---ChHH
Q 005232          431 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQ  507 (707)
Q Consensus       431 d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~---~~~~  507 (707)
                      |+++++|.++| +..+..+.+.+.+.+..+...+.+|.+.|+|+|++.++++.+...+++.++.+|+...+++   .+|.
T Consensus       446 D~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~q  524 (982)
T KOG2022|consen  446 DLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQ  524 (982)
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChh
Confidence            99999999999 8899999999999876544346789999999999999999999999999999999987654   2899


Q ss_pred             HHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhcc
Q 005232          508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE  587 (707)
Q Consensus       508 l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~  587 (707)
                      +..|+..+||.++.|+.+||.   ++++.++.|++|+++++ ...+|...+.++|++|+.+|.||+++++..+.++++.+
T Consensus       525 l~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~  600 (982)
T KOG2022|consen  525 LLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS  600 (982)
T ss_pred             HHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence            999999999999999999997   99999999999999888 78888889999999999999999999999999998864


Q ss_pred             CCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-
Q 005232          588 GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-  666 (707)
Q Consensus       588 ~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-  666 (707)
                         ...+.++.++|.+||+|++..-+|++.+|+.++++|+++.++.++....+.+.  .....+..++.++.+|.++.. 
T Consensus       601 ---~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e--~~l~~~~~l~~iS~LftSL~~~  675 (982)
T KOG2022|consen  601 ---NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQE--NHLRIAFQLNTISALFTSLINK  675 (982)
T ss_pred             ---ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHHHHHHHhccCCC
Confidence               57789999999999999999999999999999999999999999886654322  344556678999999999752 


Q ss_pred             -----------------cccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhhC
Q 005232          667 -----------------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS  707 (707)
Q Consensus       667 -----------------~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~~  707 (707)
                                       .-|++.+.++++|+++++++.|.++.+++|..|.+++++++
T Consensus       676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~  733 (982)
T KOG2022|consen  676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVR  733 (982)
T ss_pred             CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccc
Confidence                             12789999999999999999999999999999999999875

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		707
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		7e-22
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		1e-19
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-17

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 150/661 (22%), Positives = 287/661 (43%), Gaps = 83/661 (12%) Query: 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLH-DATSNLETLIFCSQTL 64 V++AL+ LY+ P+ + A +WL Q + AW + LL D ++ F + L Sbjct: 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQ--YFGASAL 82 Query: 65 RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW--G 122 K+ R ++P++ L+ L T + +F G V T++ +A+A+LA+ + + W Sbjct: 83 HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142 Query: 123 GGGIVNWLRDEMNSHPEFVPG------FLELLTVLPEEVFNYKIAARPERRRQFEK-ELT 175 +V + E + V G LELLTVLPEE ++ + P+ R+ + L Sbjct: 143 VADMVRLFQAEDSP----VDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRTSLA 195 Query: 176 SQMEVALSTLTACLHINE----LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH 231 + L L ++++VL+ F+SW++L+ +P + L+ A ++L Sbjct: 196 VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQ 251 Query: 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDV 289 L ++SV I I S A + + ++P ++ L+ L + + D E Sbjct: 252 DSELFDSSVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETS 305 Query: 290 KAIARLFADMGDSYVELIATGSD--ESML-IVHALLEVASHPEY-----DIASMTFNFWH 341 I R+ +G+++ + + +S L +V+ ++ P + +S+T FW+ Sbjct: 306 HGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY 365 Query: 342 SLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSL 399 +LQ D +SF E A + QV+R Y LV ++ + Q+P D Y S Sbjct: 366 TLQ------DDILSFEAEKQAVYQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS 414 Query: 400 EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC 459 ++ ++F+ R D ++D L+ +LG + L LY K + Sbjct: 415 DEKEQFRIYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTS 456 Query: 460 CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAXXXXXXXXXXXXX-TVCLTIGA 518 ++ W+ EA L+ ++I+ + V ++V+P ++ TV TIGA Sbjct: 457 SEEPYS-WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGA 515 Query: 519 YSKWFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYN 578 S+W + P ++ SVL ++ + E + IC +C+ L Y + Sbjct: 516 LSEWL---ADHPVMINSVLPLVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVA 571 Query: 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQG 638 V + + + + L++AL +++ L + K L L P + L+++ + Sbjct: 572 VSQDVLMKQIH---KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI 628 Query: 639 P 639 P Sbjct: 629 P 629

PyMOL of 2xwu

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		707
2x19_B		963	Importin-13; nuclear transport, protein transport;	3e-94
2x1g_F		971	Cadmus; transport protein, developmental protein,	2e-86
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	2e-68
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	8e-62
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	3e-60
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	4e-43
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	1e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	3e-11
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	1e-06
1qgr_A		876	Protein (importin beta subunit); transport recepto	1e-05
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  312 bits (800), Expect = 3e-94
 Identities = 151/739 (20%), Positives = 308/739 (41%), Gaps = 84/739 (11%)

Query: 5   NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64
             V++AL+ LY+ P+   +  A +WL   Q +  AW  +  LL       E   F +  L
Sbjct: 24  ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASAL 82

Query: 65  RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGG- 123
             K+ R   ++P++    L+  L T + +F  G   V T++ +A+A+LA+ +  + W   
Sbjct: 83  HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142

Query: 124 -GGIVNWLR--DEMNSHPEFVPGFLELLTVLPEEVFNYKI--AARPERRRQFEKELTSQM 178
              +V   +  D            LELLTVLPEE    ++    +   R     E  +  
Sbjct: 143 VADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVF 202

Query: 179 EVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238
            +    L      + ++++VL+ F+SW++L+  +         L+  A ++L    L ++
Sbjct: 203 PLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ----DCEALIQAAFAALQDSELFDS 258

Query: 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLF 296
           SV  I   I      S   A   +  +  ++P ++ L+  L  +  + D E    I R+ 
Sbjct: 259 SVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312

Query: 297 ADMGDSYVELIATGSDES---MLIVHALLEVASHPEY-----DIASMTFNFWHSLQVILT 348
             +G+++   +    +     + +V+ ++     P +       +S+T  FW++LQ  + 
Sbjct: 313 VALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372

Query: 349 KRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFK 406
             ++            +++   QV+R  Y  LV ++  + Q+P D  Y   S ++ ++F+
Sbjct: 373 SFEAE-----------KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421

Query: 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNE 466
             R D                 ++D L+    +LG +  L  LY K    +     +   
Sbjct: 422 IYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSS-EEPYS 462

Query: 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFDA 525
           W+  EA L+  ++I+  + V  ++V+P ++ L+P++     QL  TV  TIGA S+W   
Sbjct: 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL-- 520

Query: 526 ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585
            +  P ++ SVL ++   +   E  + ++    + IC +C+  L  Y   +  V +  + 
Sbjct: 521 -ADHPVMINSVLPLVLHALGNPEL-SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578

Query: 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645
            +          + L++AL  +++ L   +  K L  L  P +  L+++  + P    K 
Sbjct: 579 KQ---IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKL 635

Query: 646 HPRDLTVHIDRFAYIFRYVNH-----------------PEAVADAIQRLWPIFKAIFDIR 688
               +   +          +H                 P  V   +Q+++ + + +    
Sbjct: 636 AIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695

Query: 689 AWDMRTMESLCRACKYAVS 707
             D + +E++C   + +V 
Sbjct: 696 LNDAQVVEAVCAIFEKSVK 714

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		707
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.97
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.56
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.3
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.22
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.18
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.13
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.11
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.0
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.34
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.24
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.15
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	97.84
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.81
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.73
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.6
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.54
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.44
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.42
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.37
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.15
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.89
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.85
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.76
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	96.65
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	96.62
2x19_B		963	Importin-13; nuclear transport, protein transport;	96.53
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.36
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.32
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.17
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	96.09
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.16
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	94.92
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	94.74
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	94.7
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	94.5
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	94.23
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	94.17
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	93.79
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	93.51
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.33
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	92.68
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	92.25
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	92.19
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	92.01
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	91.42
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	91.27
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	91.14
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	90.59
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	90.42
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	89.73
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	89.54
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	89.52
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	89.37
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	88.97
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	87.9
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	87.4
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	86.23
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	85.3
4atg_A		196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	81.32

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

Probab=100.00  E-value=2.4e-73  Score=671.88  Aligned_cols=649  Identities=15%  Similarity=0.234  Sum_probs=519.9

Q ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCC-ChhHHHHHHHHHHhhhhcCCCCCChh---
Q 005232            4 QNTVKEALNALYH-HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE---   78 (707)
Q Consensus         4 ~~~v~~al~~ly~-~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~-~~~v~~faa~~L~~ki~~~w~~l~~~---   78 (707)
                      .++|.+||+..|+ ++|++.|++|++||++||++|++|++|..||.+++. +.++||||+++|+++|+    .+|++   
T Consensus         5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~   80 (980)
T 3ibv_A            5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNL   80 (980)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhH
Confidence            6789999965555 459999999999999999999999999999986433 78999999999999999    78999   


Q ss_pred             -hHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhHHHHHhccchh
Q 005232           79 -AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPE  153 (707)
Q Consensus        79 -~~~~lr~~Ll~~l~~~~--~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~--~~~~~L~~L~~L~E  153 (707)
                       ++..+|+.|++++.+.+  .++++|++|||.+++.++++++|..||+  +++++++.++++..  ....+|.+|..|+|
T Consensus        81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~E  158 (980)
T 3ibv_A           81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGD  158 (980)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence             99999999999999854  3688999999999999999999999999  99999998875422  34456666666779


Q ss_pred             hcccccccCCh---HHHHHHHHHHHHh-----hHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhccCCCCCcccccchhH
Q 005232          154 EVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPLV  223 (707)
Q Consensus       154 E~~~~~~~~~~---~~r~~~~~~l~~~-----~~~Vl~~l~~~l~--~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll  223 (707)
                      |+.+.++..+.   .|+.++++.++.+     .+.+++++.++..  ++++...+|+|+.+|+.|   +|.+.+.+.+++
T Consensus       159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll  235 (980)
T 3ibv_A          159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCM  235 (980)
T ss_dssp             HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHH
T ss_pred             HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHH
Confidence            99876543332   4556778888776     6667777777654  346889999999999997   677777778999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHh---ccCCCCHHHHHHHHHHHHHHh
Q 005232          224 LTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL---TDSSKDEEDVKAIARLFADMG  300 (707)
Q Consensus       224 ~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l---~~~~~d~~~~~~l~~l~~~l~  300 (707)
                      +.+|+.|.+++++++|++||++++++++.     ++++.+++..+     ++.+.+   ..+++|.|..+++|++++++|
T Consensus       236 ~~l~~~L~~~~~r~~A~ecL~ei~~k~~~-----~~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~g  305 (980)
T 3ibv_A          236 NLLYSFLQIEELRCAACETMTEIVNKKMK-----PLEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQG  305 (980)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHcCCC-----hhhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998752     33456666543     222222   222678889999999999999


Q ss_pred             hHHHHHHHcCC------------cchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHH
Q 005232          301 DSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSR  368 (707)
Q Consensus       301 e~~~~~i~~~~------------~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~  368 (707)
                      +.+... .+.+            +.+..+++++|.|++|++++|+..+++||+.+.+.+.+.+.      .       ..
T Consensus       306 e~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~------~-------~~  371 (980)
T 3ibv_A          306 VELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS------S-------KE  371 (980)
T ss_dssp             HHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT------S-------CC
T ss_pred             HHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc------c-------cc
Confidence            999888 6554            34568899999999999999999999999998876543110      0       01


Q ss_pred             HHHhhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHH
Q 005232          369 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA  444 (707)
Q Consensus       369 ~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~  444 (707)
                      ..+.++|++.++++++++||+||++. +|++    ||.++|.+||++                 ++ ++.+++.++|++.
T Consensus       372 ~~~~~~~~l~~Ll~~li~k~~yp~d~-~~~~~~d~ed~~~F~e~Rk~-----------------l~-~l~d~~~~l~~~~  432 (980)
T 3ibv_A          372 LSASLKEFLKSLLEAIIKKMKYDESQ-EWDDDPDSEEEAEFQEMRKK-----------------LK-IFQDTINSIDSSL  432 (980)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTC-CCCCCSSSSTHHHHHHHHHH-----------------HH-HHHHHHHHHCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHccCCCcc-ccccccchhHHHHHHHHHHH-----------------HH-HHHHHHHhcChHH
Confidence            23578999999999999999999874 3544    678899999999                 88 8999999999999


Q ss_pred             HHHHHHHHHHHHHhhcC--CCCCCcchhhHHHHHHHHhhccCCcc------ccccHHHHHhhcCCC-------CChHHHH
Q 005232          445 TLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKL-------PQQPQLL  509 (707)
Q Consensus       445 ~l~~l~~~l~~~~~~~~--~~~~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l-------~~~~~l~  509 (707)
                      ++.++++.+...+.+..  ..+.+|+++||+||+++++||++...      +++.+|.+++++..+       ++||+||
T Consensus       433 ~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~  512 (980)
T 3ibv_A          433 FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ  512 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            99966655554433211  11357999999999999999998852      335667777665432       4699999


Q ss_pred             HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh--ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhc
Q 005232          510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG  586 (707)
Q Consensus       510 ~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~--~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~  586 (707)
                      .++++++|||++|+..||+   +++++|++++.  |+++++ .++.+||+||.+||++|+++|.||++.+++.+..++..
T Consensus       513 ~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~  589 (980)
T 3ibv_A          513 LLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNI  589 (980)
T ss_dssp             HHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCC
T ss_pred             HHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcC
Confidence            9999999999999999997   99999999999  998763 49999999999999999999999999999999998774


Q ss_pred             cCCCCC----------------ChhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc-Cc
Q 005232          587 EGSLKV----------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK-HP  647 (707)
Q Consensus       587 ~~~~~l----------------~~~~~~~l~eai~~vi~~~--p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~-~~  647 (707)
                      .....-                +.+++.+++||+|.+++..  |+++...++..++.|++++++++++...++..+. ..
T Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i  669 (980)
T 3ibv_A          590 SVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV  669 (980)
T ss_dssp             CCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHH
T ss_pred             cCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHH
Confidence            210000                1347999999999999875  6778889999999999999999998654321110 11


Q ss_pred             hhhhHHHHHHHHHhhhcC-CcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhhC
Q 005232          648 RDLTVHIDRFAYIFRYVN-HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS  707 (707)
Q Consensus       648 ~~~~~~i~~l~~~~~~~~-~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~~  707 (707)
                      .+...++.+++..|+..+ .++|+..+++++|+++..++++|.++..|.|++|++++++|+
T Consensus       670 ~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~  730 (980)
T 3ibv_A          670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN  730 (980)
T ss_dssp             HHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            133344566666665443 357899999999999999999999999999999999999874

PyMOL of 3ibv

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		707
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-15
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	2e-13
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-08
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	6e-04
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.001

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (185), Expect = 8e-15
 Identities = 81/650 (12%), Positives = 182/650 (28%), Gaps = 82/650 (12%)

Query: 4   QNTVKEALNAL--YHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFC 60
           +  +++ L  L     PD  ++    + L+      D       +L    S +  T    
Sbjct: 7   EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66

Query: 61  SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
              L++ V+   +  P+     ++      L       P +R  + I +  +A     ++
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSE---CLNNIGDSSPLIRATVGILITTIASKGELQN 123

Query: 121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
           W                P+ +P    LL                              E 
Sbjct: 124 W----------------PDLLPKLCSLLDSEDYNT----------------------CEG 145

Query: 181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
           A   L       ++ E   E   S       +   +    P  L        +I S A  
Sbjct: 146 AFGAL------QKICEDSAEILDS-----DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVA 194

Query: 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
            V   +I  + A         M  I      + +L        ++ E  K + R    + 
Sbjct: 195 CVNQFIISRTQA--------LMLHIDSFTENLFAL-----AGDEEPEVRKNVCRALVMLL 241

Query: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
           +  ++ +       +  +    +     + ++A     FW +L      +D  +    + 
Sbjct: 242 EVRMDRLLPHMHNIVEYML---QRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 298

Query: 361 SAEAERSRRLQVFRSAY-ESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSST 419
                   +         +  V          QD +          +    D        
Sbjct: 299 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 358

Query: 420 LTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA 479
             E      ++D  +   S    D    +   + +  +     +             I  
Sbjct: 359 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 418

Query: 480 ISTYVSVVEAEVMPQVMALLPKL-----PQQPQLLQTVCLTIGAYSKWFDAASSDPSILA 534
           +          ++P +  L+P L      ++  +    C T+  Y+ W  +   D  +  
Sbjct: 419 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 478

Query: 535 SVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA 594
            +  +L   + +++    AA  AF  + ++   +L  YL  + +    A +     K   
Sbjct: 479 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-----KYQH 533

Query: 595 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK 644
           ++ L L +A+  +   +     K     + +P +     ++    + L  
Sbjct: 534 KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 583

PyMOL of d1qbkb_

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		707
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.97
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.94
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.06
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.99
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.9
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.82
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.62
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.14
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.76
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.38
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.11
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.02
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	92.2
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	88.99
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	88.97
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	88.81
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	85.49
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	82.23
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	81.49

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-27  Score=284.97  Aligned_cols=600  Identities=14%  Similarity=0.134  Sum_probs=358.6

Q ss_pred             CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCC------
Q 005232            1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE------   74 (707)
Q Consensus         1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~------   74 (707)
                      |...+.|.++++.   +.+|+.|++|+++|++++++|+.+..+.+++.+++.+.++|+.|+..||++|++.|..      
T Consensus         1 ~~d~~~l~~ll~~---s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~   77 (959)
T d1wa5c_           1 MSDLETVAKFLAE---SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL   77 (959)
T ss_dssp             CCHHHHHHHHHHH---TTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred             CCcHHHHHHHHHH---CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            6777777777666   4577789999999999999999999999999876667889999999999999999963      


Q ss_pred             CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhccchh
Q 005232           75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE  153 (707)
Q Consensus        75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~-~~~~~~~L~~L~~L~E  153 (707)
                      +|+++|..+|+.+++.+..   .++.+++++|.+++.++.+++|++||+  +++.+.+.++++ +......|.+|..+.+
T Consensus        78 i~~e~k~~Ik~~ll~~l~~---~~~~ir~~l~~~i~~I~~~d~p~~Wp~--ll~~l~~~l~s~~~~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_          78 LPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPT--LLSDLASRLSNDDMVTNKGVLTVAHSIFK  152 (959)
T ss_dssp             SCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCccccHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999976   678899999999999999999999999  999999998775 3456778999999988


Q ss_pred             hcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhc-
Q 005232          154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS-  229 (707)
Q Consensus       154 E~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~-  229 (707)
                      ++.....  ....+..+...+....+.+.+++....+.   .......+.++..++...              ..++.. 
T Consensus       153 ~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  216 (959)
T d1wa5c_         153 RWRPLFR--SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVL--------------IKLYYDF  216 (959)
T ss_dssp             GGTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred             HHHhhhc--chhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH--------------HHHHHHH
Confidence            7743211  22333333333334444444444433221   111111111111111110              000000 


Q ss_pred             --CCCCcc----HHHHHHHHHHHHhhhccCC-CCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhH
Q 005232          230 --LHSEIL----SEASVNVISELIHYSAAGS-SGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS  302 (707)
Q Consensus       230 --L~~~~~----~~~a~~~l~~ii~~~~~~~-~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~  302 (707)
                        ...++.    ......++..++....... ..+........                    ......+++++..+.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------------~~~~~~i~~~l~~~~~~  276 (959)
T d1wa5c_         217 NCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVL--------------------IKVKSSIQELVQLYTTR  276 (959)
T ss_dssp             HSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHH--------------------HHHHHHHHHHHHHHHHH
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHH--------------------HHHHHHHHHHHHHHHHH
Confidence              000111    1111222222222111000 00000000000                    01223455555555555


Q ss_pred             HHHHHHcCCcchHHHHHH----HhhhcccC-chhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhh--HH
Q 005232          303 YVELIATGSDESMLIVHA----LLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF--RS  375 (707)
Q Consensus       303 ~~~~i~~~~~~~~~~~~~----ll~~~~~~-~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  375 (707)
                      +...+..   ....+++.    +......+ .+.+...++.||..+.+....                    ...+  .+
T Consensus       277 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------~~~~~~~~  333 (959)
T d1wa5c_         277 YEDVFGP---MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY--------------------FEIFNNES  333 (959)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH--------------------HGGGCSHH
T ss_pred             hHHHHHH---HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHH--------------------HHHHhhhh
Confidence            5444332   11222332    22233333 467788999999877642211                    1111  24


Q ss_pred             HHHHHHHHHH-hhccC-CCCCCCCChhhhHHHHHhhhcccc-cCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHH
Q 005232          376 AYESLVSLVS-FRVQY-PQDYQDLSLEDLKEFKHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIK  452 (707)
Q Consensus       376 ~~~~ll~~l~-~k~~~-p~d~~~~~~d~~~~f~~~R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~  452 (707)
                      .+..++..++ ..+.+ ++|.+.|.+| .++|..  .+... +..      .+|.++++++..++...+ +.....+.+.
T Consensus       334 ~l~~i~~~li~~~~~~~~~d~e~~~~d-p~~~~~--~~~~~~~~~------~~r~~a~~ll~~l~~~~~-~~~~~~~~~~  403 (959)
T d1wa5c_         334 AMNNITEQIILPNVTLREEDVELFEDD-PIEYIR--RDLEGSDTD------TRRRACTDFLKELKEKNE-VLVTNIFLAH  403 (959)
T ss_dssp             HHHHHHHHTHHHHHSCCGGGTTTTTTC-HHHHHH--HHHHC----------CHHHHHHHHHHHHHHHCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHhcc-hHHHHH--HHhhhcccc------cHHHHHHHHHHHHHHhcc-ccchHHHHHH
Confidence            4445554333 33344 3455566543 233321  11000 111      245558888888888777 4555555555


Q ss_pred             HHHHHhh-cCCCCCCcchhhHHHHHHHHhhccCCccc------c---ccHHHHHhh----cCC-CCChHHHHHHHHHHHH
Q 005232          453 FVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVE------A---EVMPQVMAL----LPK-LPQQPQLLQTVCLTIG  517 (707)
Q Consensus       453 l~~~~~~-~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~------~---~~l~~l~~~----l~~-l~~~~~l~~t~~~~ig  517 (707)
                      +.+.+.. ...+..+|+.+|++++++++++.......      .   ++.+-+.+.    +.. -+.++.+|..+++++|
T Consensus       404 i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~  483 (959)
T d1wa5c_         404 MKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY  483 (959)
T ss_dssp             HHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence            5444321 11124789999999999999975432211      1   122222222    222 2347899999999999


Q ss_pred             hhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhh-----------hhhcCCHHHHHHHHHHHhh
Q 005232          518 AYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR-----------KKLCGYLDGLYNVYRTAVN  585 (707)
Q Consensus       518 ~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~-----------~~l~~~~~~l~~~~~~~~~  585 (707)
                      +|++++..     ..++.+++.+++.+.+++ .++..|+.|+.+++..+.           ..+.||++.+++.+...+.
T Consensus       484 ~~~~~~~~-----~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~  558 (959)
T d1wa5c_         484 TFRNQLTK-----AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALIL  558 (959)
T ss_dssp             HTGGGSCH-----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHH
T ss_pred             HHHhhccH-----HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHH
Confidence            99998753     278899999999998764 588999999999997543           4577999999988887765


Q ss_pred             ccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC
Q 005232          586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN  665 (707)
Q Consensus       586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  665 (707)
                      ..............++++++.++...+. ...++...++..+...+....+.    +.  ........++.++.+++..+
T Consensus       559 ~~~~~~~~~~~~~~ll~~l~~ii~~~~~-~~~~~~~~i~~~l~~~~~~~~~~----~~--~~~~~~~~~e~l~~l~~~~~  631 (959)
T d1wa5c_         559 KHGSSPEKLAENEFLMRSIFRVLQTSED-SIQPLFPQLLAQFIEIVTIMAKN----PS--NPRFTHYTFESIGAILNYTQ  631 (959)
T ss_dssp             TTCCCHHHHTSCHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHHHHHHHTTS----CC--CHHHHHHHHHHHHHHHHTSC
T ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC----cc--chHHHHHHHHHHHHHHHhcC
Confidence            4211011112345699999999888642 23344444444444444443332    22  22334456788999988754


Q ss_pred             CcccHHHHHHHHhHHHHHHHHhhcC
Q 005232          666 HPEAVADAIQRLWPIFKAIFDIRAW  690 (707)
Q Consensus       666 ~~~p~~~~~~~~~p~l~~i~~~~~~  690 (707)
                       ++....+.+.+||++..+++....
T Consensus       632 -~~~~~~l~~~l~p~i~~~~~~~~~  655 (959)
T d1wa5c_         632 -RQNLPLLVDSMMPTFLTVFSEDIQ  655 (959)
T ss_dssp             -GGGHHHHHHHHHHHHHHHHHTTCT
T ss_pred             -chhHHHHHHHHHHHHHHHHhccch
Confidence             667788899999999999987544

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure